Raspbian Package Auto-Building

Buildd status for plink2 (bullseye-staging)

Debian PTSTrackerChangelogBugspackages.d.obuildd.d.o

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ArchitectureVersionStatusForBuilddStateMiscLogs
Buildd exposure stats armhf  2.00~a3-210203+dfsg-1Build-Attempted1d 23h 13mmb-lxc-02uncompiledmisc:extraold | all (3)

Tail of log for plink2 on armhf:

g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/plink2-2.00~a3-210203+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -I/usr/include/simde -std=c++11 -O2 -DZSTD_MULTITHREAD   -Wall -Wextra -Wshadow -Wformat-security -Wold-style-cast -I../simde ../include/plink2_base.cc ../include/plink2_bits.cc ../include/pgenlib_misc.cc ../include/pgenlib_read.cc ../include/pgenlib_write.cc ../include/plink2_bgzf.cc ../include/plink2_stats.cc ../include/plink2_string.cc ../include/plink2_text.cc ../include/plink2_thread.cc ../include/plink2_zstfile.cc ../plink2.cc ../plink2_adjust.cc ../plink2_cmdline.cc ../plink2_common.cc ../plink2_compress_stream.cc ../plink2_data.cc ../plink2_decompress.cc ../plink2_export.cc ../plink2_fasta.cc ../plink2_filter.cc ../plink2_glm.cc ../plink2_help.cc ../plink2_import.cc ../plink2_ld.cc ../plink2_matrix.cc ../plink2_matrix_calc.cc ../plink2_merge.cc ../plink2_misc.cc ../plink2_psam.cc ../plink2_pvar.cc ../plink2_random.cc ../plink2_set.cc -c
../plink2_psam.cc: In function 'plink2::PglErr plink2::LoadPhenos(const char*, const RangeList*, const uintptr_t*, const SampleIdInfo*, uint32_t, uint32_t, int32_t, uint32_t, uint32_t, uint32_t, uint32_t, plink2::PhenoCol**, char**, uint32_t*, uintptr_t*)':
../plink2_psam.cc:1254:105: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context]
 1254 |       if (unlikely(S_CAST(uintptr_t, tmp_bigstack_end - bigstack_base_copy) < pheno_info_alloc_byte_ct) * (xid_idx_end - xid_idx_start)) {
g++  -Wdate-time -D_FORTIFY_SOURCE=2 ../plink2_cpu.cc -c
g++ SFMT.o plink2_base.o plink2_bits.o pgenlib_misc.o pgenlib_read.o pgenlib_write.o plink2_bgzf.o plink2_stats.o plink2_string.o plink2_text.o plink2_thread.o plink2_zstfile.o plink2.o plink2_adjust.o plink2_cmdline.o plink2_common.o plink2_compress_stream.o plink2_data.o plink2_decompress.o plink2_export.o plink2_fasta.o plink2_filter.o plink2_glm.o plink2_help.o plink2_import.o plink2_ld.o plink2_matrix.o plink2_matrix_calc.o plink2_merge.o plink2_misc.o plink2_psam.o plink2_pvar.o plink2_random.o plink2_set.o plink2_cpu.o  -o plink2"" -llapack -lblas -lcblas -latlas -lm -lpthread  -lz -lzstd -Wl,-z,relro -Wl,-z,now -ldeflate
/usr/bin/ld: plink2_thread.o: in function `plink2::UpdateU64IfSmaller(unsigned long long, unsigned long long*)':
./build_dynamic/../include/plink2_thread.cc:373: undefined reference to `__atomic_compare_exchange_8'
collect2: error: ld returned 1 exit status
make[2]: *** [Makefile:157: plink2""] Error 1
make[2]: Leaving directory '/<<BUILDDIR>>/plink2-2.00~a3-210203+dfsg/build_dynamic'
dh_auto_build: error: cd build_dynamic && make -j4 "INSTALL=install --strip-program=true" returned exit code 2
make[1]: *** [debian/rules:74: override_dh_auto_build-arch] Error 25
make[1]: Leaving directory '/<<BUILDDIR>>/plink2-2.00~a3-210203+dfsg'
make: *** [debian/rules:23: binary-arch] Error 2