yaha →
0.1.83-3 →
armhf → 2021-08-21 19:07:55
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| yaha 0.1.83-3 (armhf) Sat, 21 Aug 2021 19:01:36 +0000 |
+==============================================================================+
Package: yaha
Version: 0.1.83-3
Source Version: 0.1.83-3
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-95d68a23-9f0e-4259-9d23-4da320ac8067' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.3 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.3 MB]
Fetched 25.6 MB in 26s (974 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'yaha' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/yaha.git
Please use:
git clone https://salsa.debian.org/med-team/yaha.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 104 MB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main yaha 0.1.83-3 (dsc) [1941 B]
Get:2 http://172.17.0.1/private bookworm-staging/main yaha 0.1.83-3 (tar) [104 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main yaha 0.1.83-3 (diff) [5124 B]
Fetched 104 MB in 14s (7671 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/yaha-HMshcI/yaha-0.1.83' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/yaha-HMshcI' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-qCAJAJ/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-qCAJAJ/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-qCAJAJ/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-qCAJAJ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-qCAJAJ/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-qCAJAJ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-qCAJAJ/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-qCAJAJ/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2825 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 6 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-qCAJAJ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (23.2 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12488 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13)
Filtered Build-Depends: debhelper-compat (= 13)
dpkg-deb: building package 'sbuild-build-depends-yaha-dummy' in '/<<BUILDDIR>>/resolver-qCAJAJ/apt_archive/sbuild-build-depends-yaha-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-yaha-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-qCAJAJ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-qCAJAJ/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-qCAJAJ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-qCAJAJ/apt_archive ./ Sources [485 B]
Get:5 copy:/<<BUILDDIR>>/resolver-qCAJAJ/apt_archive ./ Packages [567 B]
Fetched 2385 B in 1s (3261 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install yaha build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1
libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2
m4 man-db po-debconf sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1
libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2
m4 man-db po-debconf sbuild-build-depends-yaha-dummy sensible-utils
0 upgraded, 32 newly installed, 0 to remove and 6 not upgraded.
Need to get 17.4 MB of archives.
After this operation, 64.4 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-qCAJAJ/apt_archive ./ sbuild-build-depends-yaha-dummy 0.invalid.0 [856 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.36.1-8 [137 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-6 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.3.4 [189 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.183-1 [161 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [580 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.3.4 [1049 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package bsdextrautils.
(Reading database ... 12488 files and directories currently installed.)
Preparing to unpack .../00-bsdextrautils_2.36.1-8_armhf.deb ...
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Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up bsdextrautils (2.36.1-8) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.3.4) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up autopoint (0.21-4) ...
Setting up sensible-utils (0.0.14) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libelf1:armhf (0.183-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.7) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up gettext (0.21-4) ...
Setting up libtool (2.4.6-15) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-6) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up debhelper (13.3.4) ...
Setting up sbuild-build-depends-yaha-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-13+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.2-2+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-13+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.2.4 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1+rpi1 base-passwd_3.5.51 bash_5.1-2 binutils_2.35.2-2+rpi1 binutils-arm-linux-gnueabihf_2.35.2-2+rpi1 binutils-common_2.35.2-2+rpi1 bsdextrautils_2.36.1-8 bsdutils_1:2.36.1-8 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.77 debhelper_13.3.4 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.2-2 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.3.0-22+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapt-pkg6.0_2.2.4 libarchive-zip-perl_1.68-1 libasan6_10.2.1-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.2-2+rpi1 libblkid1_2.36.1-8 libbz2-1.0_1.0.8-4 libc-bin_2.31-13+rpi1 libc-dev-bin_2.31-13+rpi1 libc6_2.31-13+rpi1 libc6-dev_2.31-13+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6+rpi1 libcom-err2_1.46.2-2 libcrypt-dev_1:4.4.18-4 libcrypt1_1:4.4.18-4 libctf-nobfd0_2.35.2-2+rpi1 libctf0_2.35.2-2+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.3.4 libdpkg-perl_1.20.9+rpi1 libelf1_0.183-1 libext2fs2_1.46.2-2 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.2.1-6+rpi1 libgcc-s1_10.2.1-6+rpi1 libgcrypt20_1.8.7-6 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-5 libgomp1_10.2.1-6+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-6 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.0-5 libisl23_0.23-1 libk5crypto3_1.18.3-6 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-6 libkrb5support0_1.18.3-6 libksba8_1.5.0-3 libldap-2.4-2_2.4.57+dfsg-3 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-8 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-2 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-9 libpam-modules-bin_1.4.0-9 libpam-runtime_1.4.0-9 libpam0g_1.4.0-9 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-4+deb11u1 libpipeline1_1.5.3-1 libreadline8_8.1-1 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.36.1-8 libsqlite3-0_3.34.1-3 libss2_1.46.2-2 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.3-6+rpi1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libubsan1_10.2.1-6+rpi1 libuchardet0_0.0.7-1 libudev1_247.3-6+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-8 libxml2_2.9.10+dfsg-6.7 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.2-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-8 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-4+deb11u1 perl-base_5.32.1-4+deb11u1 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-yaha-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.36.1-8 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.7FXRjJyB/trustedkeys.kbx': General error
gpgv: Signature made Sun Aug 15 17:24:36 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./yaha_0.1.83-3.dsc
dpkg-source: info: extracting yaha in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking yaha_0.1.83.orig.tar.gz
dpkg-source: info: unpacking yaha_0.1.83-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Makefile.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-95d68a23-9f0e-4259-9d23-4da320ac8067
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package yaha
dpkg-buildpackage: info: source version 0.1.83-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_auto_clean
install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -Rf obj
rm -Rf bin
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/yaha.substvars debian/files
rm -fr -- debian/yaha/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
dh_auto_build -a
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p obj
mkdir -p bin
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -c src/Main.c -o obj/Main.o
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -c src/AlignArgs.c -o obj/AlignArgs.o
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -c src/AlignHelpers.c -o obj/AlignHelpers.o
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -c src/AlignExtFrag.cpp -o obj/AlignExtFrag.o
src/Main.c: In function 'main':
src/Main.c:640:54: warning: format '%zd' expects argument of type 'signed size_t', but argument 3 has type 'long int' [-Wformat=]
640 | fprintf(stderr, "Number of non-IO page faults: %zd, Number of IO page faults: %zd.\n", usagebuf.ru_minflt, usagebuf.ru_majflt);
| ~~^ ~~~~~~~~~~~~~~~~~~
| | |
| int long int
| %ld
src/Main.c:640:85: warning: format '%zd' expects argument of type 'signed size_t', but argument 4 has type 'long int' [-Wformat=]
640 | fprintf(stderr, "Number of non-IO page faults: %zd, Number of IO page faults: %zd.\n", usagebuf.ru_minflt, usagebuf.ru_majflt);
| ~~^ ~~~~~~~~~~~~~~~~~~
| | |
| int long int
| %ld
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -c src/AlignOutput.c -o obj/AlignOutput.o
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -c src/BaseSeq.c -o obj/BaseSeq.o
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -c src/Compress.c -o obj/Compress.o
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -c src/FileHelpers.c -o obj/FileHelpers.o
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -c src/GraphPath.cpp -o obj/GraphPath.o
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -c src/Index.c -o obj/Index.o
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -c src/Query.c -o obj/Query.o
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -c src/QueryMatch.c -o obj/QueryMatch.o
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -c src/QueryState.c -o obj/QueryState.o
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -c src/SW.cpp -o obj/SW.o
src/SW.cpp:799:5: warning: redeclaration of 'template<unsigned char banded, unsigned char extension, unsigned char reverse, unsigned char XCutoff> int findAffineGapScore(QueryState_t*, char*, SUINT, char*, SUINT, EditOpList_t*, SUINT*, SUINT*)' may not have default arguments [-fpermissive]
799 | int findAffineGapScore(QueryState_t * QS, char * qStr, SUINT qLen, char * rStr, SUINT rLen, EditOpList_t * list, SUINT * addedQLen = NULL, SUINT * addedRLen = NULL)
| ^~~~~~~~~~~~~~~~~~
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -Wdate-time -D_FORTIFY_SOURCE=2 -c src/Math.c -o obj/Math.o
g++ -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -pthread -o bin/yaha obj/Main.o obj/AlignArgs.o obj/AlignHelpers.o obj/AlignExtFrag.o obj/AlignOutput.o obj/BaseSeq.o obj/Compress.o obj/FileHelpers.o obj/GraphPath.o obj/Index.o obj/Query.o obj/QueryMatch.o obj/QueryState.o obj/SW.o obj/Math.o
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
rm -fr -- /tmp/dh-xdg-rundir-ms528sWo
create-stamp debian/debhelper-build-stamp
dh_prep -a
rm -f -- debian/yaha.substvars
rm -fr -- debian/.debhelper/generated/yaha/ debian/yaha/ debian/tmp/
dh_auto_install -a
install -d /<<PKGBUILDDIR>>/debian/yaha
dh_install -a
install -d debian/yaha/usr/bin
cp --reflink=auto -a ./bin/yaha debian/yaha/usr/bin/
install -d debian/.debhelper/generated/yaha
dh_installdocs -a
install -d debian/yaha/usr/share/doc/yaha
install -p -m0644 debian/copyright debian/yaha/usr/share/doc/yaha/copyright
dh_installchangelogs -a
install -p -m0644 debian/changelog debian/yaha/usr/share/doc/yaha/changelog.Debian
dh_installman -a
install -d debian/yaha/usr/share/man/man1/
install -p -m0644 ./debian/yaha.1 debian/yaha/usr/share/man/man1/yaha.1
man-recode --to-code UTF-8 --suffix .dh-new debian/yaha/usr/share/man/man1/yaha.1
mv debian/yaha/usr/share/man/man1/yaha.1.dh-new debian/yaha/usr/share/man/man1/yaha.1
chmod 0644 -- debian/yaha/usr/share/man/man1/yaha.1
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
cd debian/yaha
chmod a-x usr/share/doc/yaha/changelog.Debian usr/share/man/man1/yaha.1
gzip -9nf usr/share/doc/yaha/changelog.Debian usr/share/man/man1/yaha.1
cd '/<<PKGBUILDDIR>>'
dh_fixperms -a
find debian/yaha ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/yaha/usr/share/doc -type f -a -true -a ! -regex 'debian/yaha/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/yaha/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/yaha/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/yaha -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/yaha/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
dh_missing -a
dh_dwz -a -a
dwz -- debian/yaha/usr/bin/yaha
dh_strip -a -a
install -d debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/73
objcopy --only-keep-debug --compress-debug-sections debian/yaha/usr/bin/yaha debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/73/f18c7b3ed17176f938f2b2522db58edfe9d898.debug
chmod 0644 -- debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/73/f18c7b3ed17176f938f2b2522db58edfe9d898.debug
strip --remove-section=.comment --remove-section=.note debian/yaha/usr/bin/yaha
objcopy --add-gnu-debuglink debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/73/f18c7b3ed17176f938f2b2522db58edfe9d898.debug debian/yaha/usr/bin/yaha
install -d debian/.debhelper/yaha/dbgsym-root/usr/share/doc
ln -s yaha debian/.debhelper/yaha/dbgsym-root/usr/share/doc/yaha-dbgsym
dh_makeshlibs -a -a
rm -f debian/yaha/DEBIAN/shlibs
dh_shlibdeps -a -a
install -d debian/yaha/DEBIAN
dpkg-shlibdeps -Tdebian/yaha.substvars debian/yaha/usr/bin/yaha
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/yaha/usr/bin/yaha was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
echo misc:Depends= >> debian/yaha.substvars
echo misc:Pre-Depends= >> debian/yaha.substvars
install -d debian/.debhelper/yaha/dbgsym-root/DEBIAN
dpkg-gencontrol -pyaha -ldebian/changelog -Tdebian/yaha.substvars -Pdebian/.debhelper/yaha/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=yaha-dbgsym "-DDepends=yaha (= \${binary:Version})" "-DDescription=debug symbols for yaha" -DBuild-Ids=73f18c7b3ed17176f938f2b2522db58edfe9d898 -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/yaha/dbgsym-root/DEBIAN/control
dpkg-gencontrol -pyaha -ldebian/changelog -Tdebian/yaha.substvars -Pdebian/yaha
chmod 0644 -- debian/yaha/DEBIAN/control
dh_md5sums -a
cd debian/yaha >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/yaha/DEBIAN/md5sums
cd debian/.debhelper/yaha/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/yaha/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a
dpkg-deb --root-owner-group --build debian/yaha ..
dpkg-deb --root-owner-group --build debian/.debhelper/yaha/dbgsym-root ..
dpkg-deb: building package 'yaha' in '../yaha_0.1.83-3_armhf.deb'.
dpkg-deb: building package 'yaha-dbgsym' in '../yaha-dbgsym_0.1.83-3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../yaha_0.1.83-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-08-21T19:07:50Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
yaha_0.1.83-3_armhf.changes:
----------------------------
Format: 1.8
Date: Sun, 15 Aug 2021 22:51:41 +0530
Source: yaha
Binary: yaha yaha-dbgsym
Architecture: armhf
Version: 0.1.83-3
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Shruti Sridhar <shruti.sridhar99@gmail.com>
Description:
yaha - find split-read mappings on single-end queries
Changes:
yaha (0.1.83-3) unstable; urgency=medium
.
[ Shruti Sridhar ]
* Team upload
* Add autopkgtests
* Install README as docs
.
[ Nilesh Patra ]
* Add CPPFLAGS for hardening
* Declare compliance with policy 4.5.1
Checksums-Sha1:
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Checksums-Sha256:
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Files:
4ddcfcb6fd70d0a9106d422e7e9656c7 165960 debug optional yaha-dbgsym_0.1.83-3_armhf.deb
3fc90681c28755c8675a7e927d4c2fe2 4798 science optional yaha_0.1.83-3_armhf.buildinfo
f23ccb17ba41cea65c76f7025f67a9f2 35908 science optional yaha_0.1.83-3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
yaha-dbgsym_0.1.83-3_armhf.deb
------------------------------
new Debian package, version 2.0.
size 165960 bytes: control archive=532 bytes.
360 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: yaha-dbgsym
Source: yaha
Version: 0.1.83-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 183
Depends: yaha (= 0.1.83-3)
Section: debug
Priority: optional
Description: debug symbols for yaha
Build-Ids: 73f18c7b3ed17176f938f2b2522db58edfe9d898
drwxr-xr-x root/root 0 2021-08-15 17:21 ./
drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/
drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/lib/
drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/lib/debug/.build-id/73/
-rw-r--r-- root/root 176744 2021-08-15 17:21 ./usr/lib/debug/.build-id/73/f18c7b3ed17176f938f2b2522db58edfe9d898.debug
drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/share/
drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-08-15 17:21 ./usr/share/doc/yaha-dbgsym -> yaha
yaha_0.1.83-3_armhf.deb
-----------------------
new Debian package, version 2.0.
size 35908 bytes: control archive=1064 bytes.
1126 bytes, 23 lines control
246 bytes, 4 lines md5sums
Package: yaha
Version: 0.1.83-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 88
Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5)
Section: science
Priority: optional
Homepage: https://github.com/GregoryFaust/yaha
Description: find split-read mappings on single-end queries
yaha is an open source, flexible, sensitive and accurate DNA aligner
designed for single-end reads. It supports three major modes of
operation:
* The default “Optimal Query Coverage” (-OQC) mode reports the
best set of alignments that cover the length of each query.
* Using “Filter By Similarity” (-FBS), along with the best set of
alignments, yaha will also output alignments that are highly similar
to an alignment in the best set.
* Finally, yaha can output all the alignments found for each query.
The -OQC and -FBS modes are specifically tuned to form split read
mappings that can be used to accurately identify structural variation
events (deletions, duplications, insertions or inversions) between the
subject query and the reference genome.
drwxr-xr-x root/root 0 2021-08-15 17:21 ./
drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/
drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/bin/
-rwxr-xr-x root/root 75720 2021-08-15 17:21 ./usr/bin/yaha
drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/share/
drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/share/doc/yaha/
-rw-r--r-- root/root 538 2021-08-15 17:21 ./usr/share/doc/yaha/changelog.Debian.gz
-rw-r--r-- root/root 1340 2021-06-03 09:05 ./usr/share/doc/yaha/copyright
drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/share/man/
drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/share/man/man1/
-rw-r--r-- root/root 1338 2021-08-15 17:21 ./usr/share/man/man1/yaha.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 119068
Build-Time: 50
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 248
Job: yaha_0.1.83-3
Machine Architecture: armhf
Package: yaha
Package-Time: 374
Source-Version: 0.1.83-3
Space: 119068
Status: successful
Version: 0.1.83-3
--------------------------------------------------------------------------------
Finished at 2021-08-21T19:07:50Z
Build needed 00:06:14, 119068k disc space