yaha →
0.1.83-1 →
armhf → 2018-08-07 20:05:09
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| yaha 0.1.83-1 (armhf) Tue, 07 Aug 2018 20:02:31 +0000 |
+==============================================================================+
Package: yaha
Version: 0.1.83-1
Source Version: 0.1.83-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-801718d2-d2d1-40ba-9547-1ef672bcabaf' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.9 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.7 MB]
Fetched 23.6 MB in 10s (2432 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'yaha' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/yaha.git
Please use:
git clone https://salsa.debian.org/med-team/yaha.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 104 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main yaha 0.1.83-1 (dsc) [1912 B]
Get:2 http://172.17.0.1/private buster-staging/main yaha 0.1.83-1 (tar) [104 MB]
Get:3 http://172.17.0.1/private buster-staging/main yaha 0.1.83-1 (diff) [4316 B]
Fetched 104 MB in 26s (3991 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/yaha-Buxe4p/yaha-0.1.83' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/yaha-Buxe4p' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-15ANwm/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-15ANwm/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-15ANwm/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-15ANwm/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-15ANwm/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-15ANwm/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-15ANwm/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-15ANwm/apt_archive ./ Packages [434 B]
Fetched 2110 B in 0s (11.5 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 92 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-15ANwm/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15728 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11)
Filtered Build-Depends: debhelper (>= 11)
dpkg-deb: building package 'sbuild-build-depends-yaha-dummy' in '/<<BUILDDIR>>/resolver-15ANwm/apt_archive/sbuild-build-depends-yaha-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-yaha-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-15ANwm/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-15ANwm/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-15ANwm/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-15ANwm/apt_archive ./ Sources [484 B]
Get:5 copy:/<<BUILDDIR>>/resolver-15ANwm/apt_archive ./ Packages [564 B]
Fetched 2381 B in 0s (12.7 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install yaha build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1
libfile-stripnondeterminism-perl libfreetype6 libglib2.0-0 libgraphite2-3
libharfbuzz0b libicu-le-hb0 libicu60 libmagic-mgc libmagic1 libpipeline1
libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1
libfile-stripnondeterminism-perl libfreetype6 libglib2.0-0 libgraphite2-3
libharfbuzz0b libicu-le-hb0 libicu60 libmagic-mgc libmagic1 libpipeline1
libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf
sbuild-build-depends-yaha-dummy
0 upgraded, 36 newly installed, 0 to remove and 92 not upgraded.
Need to get 20.2 MB/20.8 MB of archives.
After this operation, 68.5 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-15ANwm/apt_archive ./ sbuild-build-depends-yaha-dummy 0.invalid.0 [852 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-2 [1161 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.33-3 [234 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.33-3 [106 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.33-3 [64.7 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3.1 [736 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2.1 [547 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.042-1 [20.1 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.042-1 [12.1 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.8.4-1+rpi1 [836 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.5 [981 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libarchive-zip-perl (1.60-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libelf1:armhf (0.170-0.5) ...
Setting up groff-base (1.22.3-10) ...
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No schema files found: removed existing output file.
Setting up gettext-base (0.19.8.1-6) ...
Setting up libpipeline1:armhf (1.5.0-1) ...
Setting up m4 (1.4.18-1) ...
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Setting up libfreetype6:armhf (2.8.1-2) ...
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Setting up libmagic1:armhf (1:5.33-3) ...
Setting up libgraphite2-3:armhf (1.3.11-2) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...
Setting up dwz (0.12-2) ...
Setting up autotools-dev (20180224.1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autopoint (0.19.8.1-6) ...
Setting up libfile-stripnondeterminism-perl (0.042-1) ...
Setting up libharfbuzz0b:armhf (1.8.4-1+rpi1) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.33-3) ...
Setting up automake (1:1.15.1-3.1) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.8.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-2.1) ...
Setting up dh-autoreconf (19) ...
Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
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Setting up libcroco3:armhf (0.6.12-2) ...
Setting up gettext (0.19.8.1-6) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.20) ...
Setting up debhelper (11.3.5) ...
Setting up sbuild-build-depends-yaha-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.042-1) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.30-21+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-19 gcc-7_7.3.0-19 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 linux-libc-dev_4.16.12-1+rpi1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3 binutils_2.30-21+rpi1 binutils-arm-linux-gnueabihf_2.30-21+rpi1 binutils-common_2.30-21+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32-0.1 build-essential_12.5 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.3.0-3+rpi1 cpp-7_7.3.0-19 dash_0.5.8-2.10 dbus_1.12.8-3 dbus-user-session_1.12.8-3 debconf_1.5.67 debhelper_11.3.5 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dirmngr_2.2.8-1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 e2fsprogs-l10n_1.44.2-1 fakeroot_1.22-2 fdisk_2.32-0.1 file_1:5.33-3 findutils_4.6.0+git+20171230-2 g++_4:7.3.0-3+rpi1 g++-7_7.3.0-19 gcc_4:7.3.0-3+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b7 gcc-5-base_5.5.0-8 gcc-7_7.3.0-19 gcc-7-base_7.3.0-19 gcc-8-base_8.1.0-8+rpi1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gnupg_2.2.8-1 gnupg-agent_2.2.8-1 gnupg-l10n_2.2.8-1 gnupg-utils_2.2.8-1 gpg_2.2.8-1 gpg-agent_2.2.8-1 gpg-wks-client_2.2.8-1 gpg-wks-server_2.2.8-1 gpgconf_2.2.8-1 gpgsm_2.2.8-1 gpgv_2.2.8-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.12-4 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-19 libassuan0_2.5.1-2 libatomic1_8.1.0-8+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-21+rpi1 libblkid1_2.32-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3+rpi1 libc-dev-bin_2.27-3+rpi1 libc6_2.27-3+rpi1 libc6-dev_2.27-3+rpi1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-8+rpi1 libcilkrts5_7.3.0-19 libcom-err2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.8-3 libdebconfclient0_0.243 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.92-1+rpi1 libdrm2_2.4.92-1+rpi1 libelf1_0.170-0.5 libexpat1_2.2.5-3 libext2fs2_1.44.2-1 libfakeroot_1.22-2 libfdisk1_2.32-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfreetype6_2.8.1-2 libgcc-7-dev_7.3.0-19 libgcc1_1:8.1.0-8+rpi1 libgcrypt20_1.8.3-1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8.1.0-8+rpi1 libgpg-error0_1.31-1 libgraphite2-3_1.3.11-2 libharfbuzz0b_1.8.4-1+rpi1 libhogweed4_3.4-1 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl19_0.19-1 libjson-c3_0.12.1-1.3 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-4 libncurses6_6.1+20180210-4 libncursesw5_6.1+20180210-4 libncursesw6_6.1+20180210-4 libnettle6_3.4-1 libnpth0_1.5-4 libnss-systemd_238-4 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_238-4 libpam0g_1.1.8-3.7 libpcre3_2:8.39-9 libperl5.24_5.24.1-7 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libplymouth4_0.9.3-3 libpng16-16_1.6.34-1 libprocps7_2:3.3.15-2 libreadline7_7.0-5 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-2 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.32-0.1 libsqlite3-0_3.24.0-1 libss2_1.44.2-1 libssl1.1_1.1.0h-4 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 libsystemd0_238-4 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4 libtinfo6_6.1+20180210-4 libtool_2.4.6-2.1 libubsan0_7.3.0-19 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1 libxml2_2.9.4+dfsg1-7 libzstd1_1.3.4+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.16.12-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.4-2 mawk_1.3.3-17 mount_2.32-0.1 multiarch-support_2.27-3+rpi1 nano_2.9.8-1 ncurses-base_6.1+20180210-4 ncurses-bin_6.1+20180210-4 netbase_5.4 openssl_1.1.0h-4 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-yaha-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-4 systemd-sysv_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 udev_238-4 util-linux_2.32-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Jul 18 15:52:37 2018 UTC
gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1
gpgv: issuer "moeller@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./yaha_0.1.83-1.dsc
dpkg-source: info: extracting yaha in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking yaha_0.1.83.orig.tar.gz
dpkg-source: info: unpacking yaha_0.1.83-1.debian.tar.xz
dpkg-source: info: applying Makefile.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-801718d2-d2d1-40ba-9547-1ef672bcabaf
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package yaha
dpkg-buildpackage: info: source version 0.1.83-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build yaha-0.1.83
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -Rf obj
rm -Rf bin
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/yaha.substvars debian/files
rm -fr -- debian/yaha/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p obj
mkdir -p bin
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/Main.c -o obj/Main.o
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/AlignArgs.c -o obj/AlignArgs.o
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/AlignHelpers.c -o obj/AlignHelpers.o
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -c src/AlignExtFrag.cpp -o obj/AlignExtFrag.o
src/Main.c: In function 'main':
src/Main.c:640:54: warning: format '%zd' expects argument of type 'signed size_t', but argument 3 has type 'long int' [-Wformat=]
fprintf(stderr, "Number of non-IO page faults: %zd, Number of IO page faults: %zd.\n", usagebuf.ru_minflt, usagebuf.ru_majflt);
~~^ ~~~~~~~~~~~~~~~~~~
%ld
src/Main.c:640:85: warning: format '%zd' expects argument of type 'signed size_t', but argument 4 has type 'long int' [-Wformat=]
fprintf(stderr, "Number of non-IO page faults: %zd, Number of IO page faults: %zd.\n", usagebuf.ru_minflt, usagebuf.ru_majflt);
~~^ ~~~~~~~~~~~~~~~~~~
%ld
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/AlignOutput.c -o obj/AlignOutput.o
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/BaseSeq.c -o obj/BaseSeq.o
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/Compress.c -o obj/Compress.o
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/FileHelpers.c -o obj/FileHelpers.o
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -c src/GraphPath.cpp -o obj/GraphPath.o
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/Index.c -o obj/Index.o
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/Query.c -o obj/Query.o
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/QueryMatch.c -o obj/QueryMatch.o
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/QueryState.c -o obj/QueryState.o
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -c src/SW.cpp -o obj/SW.o
src/SW.cpp:799:5: warning: redeclaration of 'template<unsigned char banded, unsigned char extension, unsigned char reverse, unsigned char XCutoff> int findAffineGapScore(QueryState_t*, char*, SUINT, char*, SUINT, EditOpList_t*, SUINT*, SUINT*)' may not have default arguments [-fpermissive]
int findAffineGapScore(QueryState_t * QS, char * qStr, SUINT qLen, char * rStr, SUINT rLen, EditOpList_t * list, SUINT * addedQLen = NULL, SUINT * addedRLen = NULL)
^~~~~~~~~~~~~~~~~~
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -c src/Math.c -o obj/Math.o
g++ -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -pthread -o bin/yaha obj/Main.o obj/AlignArgs.o obj/AlignHelpers.o obj/AlignExtFrag.o obj/AlignOutput.o obj/BaseSeq.o obj/Compress.o obj/FileHelpers.o obj/GraphPath.o obj/Index.o obj/Query.o obj/QueryMatch.o obj/QueryState.o obj/SW.o obj/Math.o
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
rm -f -- debian/yaha.substvars
rm -fr -- debian/.debhelper/generated/yaha/ debian/yaha/ debian/tmp/
dh_auto_install -a
dh_install -a
install -d debian/yaha/usr/bin
cp --reflink=auto -a ./bin/yaha debian/yaha/usr/bin/
install -d debian/.debhelper/generated/yaha
dh_installdocs -a
install -d debian/yaha/usr/share/doc/yaha
install -p -m0644 debian/copyright debian/yaha/usr/share/doc/yaha/copyright
dh_installchangelogs -a
install -p -m0644 debian/changelog debian/yaha/usr/share/doc/yaha/changelog.Debian
dh_installman -a
install -d debian/yaha/usr/share/man/man1/
install -p -m0644 ./debian/yaha.1 debian/yaha/usr/share/man/man1/yaha.1
man -l --recode UTF-8 ./debian/yaha/usr/share/man/man1/yaha.1 > debian/yaha/usr/share/man/man1/yaha.1.dh-new
mv debian/yaha/usr/share/man/man1/yaha.1.dh-new debian/yaha/usr/share/man/man1/yaha.1
chmod 0644 -- debian/yaha/usr/share/man/man1/yaha.1
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
cd debian/yaha
chmod a-x usr/share/doc/yaha/changelog.Debian usr/share/man/man1/yaha.1
gzip -9nf usr/share/doc/yaha/changelog.Debian usr/share/man/man1/yaha.1
cd '/<<PKGBUILDDIR>>'
dh_fixperms -a
find debian/yaha -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/yaha ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/yaha/usr/share/doc -type f -a -true -a ! -regex 'debian/yaha/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/yaha/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/yaha/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/yaha -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/yaha/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
dh_missing -a
dh_strip -a
install -d debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/1b
objcopy --only-keep-debug --compress-debug-sections debian/yaha/usr/bin/yaha debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/1b/f931f42b11f24c7b8340704abf6bfe257c528a.debug
chmod 0644 -- debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/1b/f931f42b11f24c7b8340704abf6bfe257c528a.debug
chown 0:0 -- debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/1b/f931f42b11f24c7b8340704abf6bfe257c528a.debug
strip --remove-section=.comment --remove-section=.note debian/yaha/usr/bin/yaha
objcopy --add-gnu-debuglink debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/1b/f931f42b11f24c7b8340704abf6bfe257c528a.debug debian/yaha/usr/bin/yaha
install -d debian/.debhelper/yaha/dbgsym-root/usr/share/doc
ln -s yaha debian/.debhelper/yaha/dbgsym-root/usr/share/doc/yaha-dbgsym
dh_makeshlibs -a
rm -f debian/yaha/DEBIAN/shlibs
dh_shlibdeps -a
install -d debian/yaha/DEBIAN
dpkg-shlibdeps -Tdebian/yaha.substvars debian/yaha/usr/bin/yaha
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/yaha/usr/bin/yaha was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
echo misc:Depends= >> debian/yaha.substvars
echo misc:Pre-Depends= >> debian/yaha.substvars
install -d debian/.debhelper/yaha/dbgsym-root/DEBIAN
dpkg-gencontrol -pyaha -ldebian/changelog -Tdebian/yaha.substvars -Pdebian/.debhelper/yaha/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=yaha-dbgsym "-DDepends=yaha (= \${binary:Version})" "-DDescription=debug symbols for yaha" -DBuild-Ids=1bf931f42b11f24c7b8340704abf6bfe257c528a -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/yaha/dbgsym-root/DEBIAN/control
chown 0:0 -- debian/.debhelper/yaha/dbgsym-root/DEBIAN/control
dpkg-gencontrol -pyaha -ldebian/changelog -Tdebian/yaha.substvars -Pdebian/yaha -UMulti-Arch
chmod 0644 -- debian/yaha/DEBIAN/control
chown 0:0 -- debian/yaha/DEBIAN/control
dh_md5sums -a
(cd debian/yaha >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null
chmod 0644 -- debian/yaha/DEBIAN/md5sums
chown 0:0 -- debian/yaha/DEBIAN/md5sums
(cd debian/.debhelper/yaha/dbgsym-root >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null
chmod 0644 -- debian/.debhelper/yaha/dbgsym-root/DEBIAN/md5sums
chown 0:0 -- debian/.debhelper/yaha/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a
dpkg-deb --build debian/yaha ..
dpkg-deb --build debian/.debhelper/yaha/dbgsym-root ..
dpkg-deb: building package 'yaha' in '../yaha_0.1.83-1_armhf.deb'.
dpkg-deb: building package 'yaha-dbgsym' in '../yaha-dbgsym_0.1.83-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../yaha_0.1.83-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build yaha-0.1.83
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-08-07T20:05:07Z
Finished
--------
I: Built successfully
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| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
yaha_0.1.83-1_armhf.changes:
----------------------------
Format: 1.8
Date: Wed, 11 Jul 2018 20:27:27 +0200
Source: yaha
Binary: yaha
Architecture: armhf
Version: 0.1.83-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Steffen Moeller <moeller@debian.org>
Description:
yaha - find split-read mappings on single-end queries
Closes: 903602
Changes:
yaha (0.1.83-1) unstable; urgency=medium
.
* Initial release (Closes: #903602)
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Checksums-Sha256:
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Files:
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85dfb6dfde0d877f644e02faafa6d2b2 4552 science optional yaha_0.1.83-1_armhf.buildinfo
4de5b10661be19a3f98f3487a83030da 34764 science optional yaha_0.1.83-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
yaha-dbgsym_0.1.83-1_armhf.deb
------------------------------
new Debian package, version 2.0.
size 123448 bytes: control archive=532 bytes.
360 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: yaha-dbgsym
Source: yaha
Version: 0.1.83-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 144
Depends: yaha (= 0.1.83-1)
Section: debug
Priority: optional
Description: debug symbols for yaha
Build-Ids: 1bf931f42b11f24c7b8340704abf6bfe257c528a
drwxr-xr-x root/root 0 2018-07-11 18:27 ./
drwxr-xr-x root/root 0 2018-07-11 18:27 ./usr/
drwxr-xr-x root/root 0 2018-07-11 18:27 ./usr/lib/
drwxr-xr-x root/root 0 2018-07-11 18:27 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-07-11 18:27 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-07-11 18:27 ./usr/lib/debug/.build-id/1b/
-rw-r--r-- root/root 137132 2018-07-11 18:27 ./usr/lib/debug/.build-id/1b/f931f42b11f24c7b8340704abf6bfe257c528a.debug
drwxr-xr-x root/root 0 2018-07-11 18:27 ./usr/share/
drwxr-xr-x root/root 0 2018-07-11 18:27 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-07-11 18:27 ./usr/share/doc/yaha-dbgsym -> yaha
yaha_0.1.83-1_armhf.deb
-----------------------
new Debian package, version 2.0.
size 34764 bytes: control archive=1064 bytes.
1126 bytes, 23 lines control
246 bytes, 4 lines md5sums
Package: yaha
Version: 0.1.83-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 88
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5)
Section: science
Priority: optional
Homepage: https://github.com/GregoryFaust/yaha
Description: find split-read mappings on single-end queries
yaha is an open source, flexible, sensitive and accurate DNA aligner
designed for single-end reads. It supports three major modes of
operation:
* The default “Optimal Query Coverage” (-OQC) mode reports the
best set of alignments that cover the length of each query.
* Using “Filter By Similarity” (-FBS), along with the best set of
alignments, yaha will also output alignments that are highly similar
to an alignment in the best set.
* Finally, yaha can output all the alignments found for each query.
The -OQC and -FBS modes are specifically tuned to form split read
mappings that can be used to accurately identify structural variation
events (deletions, duplications, insertions or inversions) between the
subject query and the reference genome.
drwxr-xr-x root/root 0 2018-07-11 18:27 ./
drwxr-xr-x root/root 0 2018-07-11 18:27 ./usr/
drwxr-xr-x root/root 0 2018-07-11 18:27 ./usr/bin/
-rwxr-xr-x root/root 75720 2018-07-11 18:27 ./usr/bin/yaha
drwxr-xr-x root/root 0 2018-07-11 18:27 ./usr/share/
drwxr-xr-x root/root 0 2018-07-11 18:27 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-07-11 18:27 ./usr/share/doc/yaha/
-rw-r--r-- root/root 156 2018-07-11 18:27 ./usr/share/doc/yaha/changelog.Debian.gz
-rw-r--r-- root/root 1342 2018-07-11 18:27 ./usr/share/doc/yaha/copyright
drwxr-xr-x root/root 0 2018-07-11 18:27 ./usr/share/man/
drwxr-xr-x root/root 0 2018-07-11 18:27 ./usr/share/man/man1/
-rw-r--r-- root/root 1338 2018-07-11 18:27 ./usr/share/man/man1/yaha.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 118720
Build-Time: 11
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 99
Job: yaha_0.1.83-1
Machine Architecture: armhf
Package: yaha
Package-Time: 156
Source-Version: 0.1.83-1
Space: 118720
Status: successful
Version: 0.1.83-1
--------------------------------------------------------------------------------
Finished at 2018-08-07T20:05:07Z
Build needed 00:02:36, 118720k disk space