Raspbian Package Auto-Building

Build log for unanimity (3.3.0+dfsg-2.1) on armhf

unanimity3.3.0+dfsg-2.1armhf → 2019-08-24 01:29:40

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01

+==============================================================================+
| unanimity 3.3.0+dfsg-2.1 (armhf)             Sat, 24 Aug 2019 01:15:43 +0000 |
+==============================================================================+

Package: unanimity
Version: 3.3.0+dfsg-2.1
Source Version: 3.3.0+dfsg-2.1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-ee3513ec-f1de-4a45-8be1-de798a471c7f' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.0 MB]
Fetched 24.5 MB in 9s (2640 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'unanimity' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/unanimity.git
Please use:
git clone https://salsa.debian.org/med-team/unanimity.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3612 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main unanimity 3.3.0+dfsg-2.1 (dsc) [2292 B]
Get:2 http://172.17.0.1/private bullseye-staging/main unanimity 3.3.0+dfsg-2.1 (tar) [3601 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main unanimity 3.3.0+dfsg-2.1 (diff) [9244 B]
Fetched 3612 kB in 1s (5957 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/unanimity-GMymvW/unanimity-3.3.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/unanimity-GMymvW' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-jms27j/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-jms27j/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-jms27j/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-jms27j/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-jms27j/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-jms27j/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-jms27j/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-jms27j/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (7914 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 88 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-jms27j/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12050 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 12~), dh-python, cmake, swig, python-setuptools, python-all-dev, python-numpy, libboost-dev, libhts-dev, libpbbam-dev (>= 0.18.0+dfsg-1~), libpbcopper-dev, libseqan2-dev, pandoc
Filtered Build-Depends: debhelper (>= 12~), dh-python, cmake, swig, python-setuptools, python-all-dev, python-numpy, libboost-dev, libhts-dev, libpbbam-dev (>= 0.18.0+dfsg-1~), libpbcopper-dev, libseqan2-dev, pandoc
dpkg-deb: building package 'sbuild-build-depends-unanimity-dummy' in '/<<BUILDDIR>>/resolver-jms27j/apt_archive/sbuild-build-depends-unanimity-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-unanimity-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-jms27j/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-jms27j/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-jms27j/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-jms27j/apt_archive ./ Sources [579 B]
Get:5 copy:/<<BUILDDIR>>/resolver-jms27j/apt_archive ./ Packages [668 B]
Fetched 2580 B in 0s (9884 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install unanimity build dependencies (apt-based resolver)
---------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
  gcc-9-base gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libarchive13 libblas3 libboost-dev libboost1.67-dev
  libbsd0 libcroco3 libcurl3-gnutls libcurl4 libdeflate0 libelf1 libexpat1
  libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
  libgnutls30 libgssapi-krb5-2 libhts-dev libhts2 libicu63 libjsoncpp1
  libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblua5.1-0
  liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses6 libncursesw6
  libnghttp2-14 libpbbam-dev libpbbam0.19.0 libpbcopper-dev libpipeline1
  libprocps7 libpsl5 libpython-all-dev libpython-dev libpython-stdlib
  libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev
  libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib
  libpython3.7-minimal libpython3.7-stdlib libreadline8 librhash0 librtmp1
  libseqan2-dev libsigsegv2 libssh2-1 libssl-dev libssl1.1
  libsub-override-perl libtasn1-6 libtinfo5 libtinfo6 libtool libuchardet0
  libuv1 libxml2 libyaml-0-2 m4 man-db mime-support pandoc pandoc-data
  po-debconf procps python python-all python-all-dev python-dev python-minimal
  python-numpy python-pkg-resources python-setuptools python2 python2-dev
  python2-minimal python2.7 python2.7-dev python2.7-minimal python3
  python3-distutils python3-lib2to3 python3-minimal python3.7
  python3.7-minimal sensible-utils swig swig3.0 zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev
  libgettextpo-dev groff lrzip libboost-doc libboost1.67-doc
  libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev
  libboost-context1.67-dev libboost-coroutine1.67-dev
  libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev
  libboost-filesystem1.67-dev libboost-graph1.67-dev
  libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
  libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
  libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
  libboost-program-options1.67-dev libboost-python1.67-dev
  libboost-random1.67-dev libboost-regex1.67-dev
  libboost-serialization1.67-dev libboost-signals1.67-dev
  libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev
  libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev
  libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev
  gnutls-bin krb5-doc krb5-user liblzma-doc libssl-doc libtool-doc gfortran
  | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
  texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc
  texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc nodejs php ruby
  r-base-core libjs-mathjax node-katex libmail-box-perl python-doc python-tk
  gfortran python-pytest python-numpy-dbg python-numpy-doc
  python-setuptools-doc python2-doc python2.7-doc binfmt-support python3-doc
  python3-tk python3-venv python3.7-venv python3.7-doc swig-doc swig-examples
  swig3.0-examples swig3.0-doc
Recommended packages:
  curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libltdl-dev
  libmail-sendmail-perl psmisc
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file
  gcc-9-base gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libarchive13 libblas3 libboost-dev libboost1.67-dev
  libbsd0 libcroco3 libcurl3-gnutls libcurl4 libdeflate0 libelf1 libexpat1
  libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
  libgssapi-krb5-2 libhts-dev libhts2 libicu63 libjsoncpp1 libk5crypto3
  libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblua5.1-0 liblzma-dev
  libmagic-mgc libmagic1 libmpdec2 libncurses6 libnghttp2-14 libpbbam-dev
  libpbbam0.19.0 libpbcopper-dev libpipeline1 libprocps7 libpsl5
  libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
  libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
  libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal
  libpython3.7-stdlib libreadline8 librhash0 librtmp1 libseqan2-dev
  libsigsegv2 libssh2-1 libssl-dev libssl1.1 libsub-override-perl libtinfo5
  libtool libuchardet0 libuv1 libxml2 libyaml-0-2 m4 man-db mime-support
  pandoc pandoc-data po-debconf procps python python-all python-all-dev
  python-dev python-minimal python-numpy python-pkg-resources
  python-setuptools python2 python2-dev python2-minimal python2.7
  python2.7-dev python2.7-minimal python3 python3-distutils python3-lib2to3
  python3-minimal python3.7 python3.7-minimal
  sbuild-build-depends-unanimity-dummy sensible-utils swig swig3.0 zlib1g-dev
The following packages will be upgraded:
  libgnutls30 libncursesw6 libtasn1-6 libtinfo6
4 upgraded, 116 newly installed, 0 to remove and 84 not upgraded.
Need to get 109 MB of archives.
After this operation, 499 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-jms27j/apt_archive ./ sbuild-build-depends-unanimity-dummy 0.invalid.0 [944 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20190803-1 [314 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.8.6.1-1 [1248 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-minimal armhf 2.7.16-3 [395 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf python2.7-minimal armhf 2.7.16-3 [1090 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf python2-minimal armhf 2.7.16-1 [41.4 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python-minimal armhf 2.7.16-1 [21.0 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1c-1 [1259 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.63 [37.7 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.7-1 [77.2 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libtinfo6 armhf 6.1+20190803-1 [318 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libncursesw6 armhf 6.1+20190803-1 [104 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libreadline8 armhf 8.0-2 [137 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-stdlib armhf 2.7.16-3 [1845 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python2.7 armhf 2.7.16-3 [305 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libpython2-stdlib armhf 2.7.16-1 [20.8 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libpython-stdlib armhf 2.7.16-1 [20.8 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf python2 armhf 2.7.16-1 [41.6 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf python armhf 2.7.16-1 [22.8 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.4-2 [583 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.4-2 [1462 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.3-1 [36.6 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.4-2 [1670 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.4-2 [340 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.3-1 [20.0 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.3-1 [61.5 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libtasn1-6 armhf 4.14-2 [48.2 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libgnutls30 armhf 3.6.9-4 [1081 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf gcc-9-base armhf 9.1.0-10+rpi1 [190 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20190803-1 [79.3 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libprocps7 armhf 2:3.3.15-2 [58.9 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.15-2 [235 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-5 [253 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-5 [111 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-5 [66.2 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.13.4-1 [1476 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b2 [571 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.3.3-4 [270 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6-6 [14.0 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.39.2-1 [71.3 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.65.3-1 [300 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.3.8-1 [132 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.30.1-1 [102 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.13.4-1 [2559 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-9 [547 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.5.0-1 [22.8 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.5.0-1 [14.1 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-1 [69.7 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.60.6-2 [1109 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.5.3 [1036 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.7.4-3 [78.2 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.7.4-3 [145 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20190722 [99.5 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.1.0-10+rpi1 [230 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.8.0-2 [103 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libboost1.67-dev armhf 1.67.0-13 [8386 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.67.0.2 [4184 B]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.65.3-1 [298 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.2-1 [48.4 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.7-1 [128 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libhts2 armhf 1.9-11 [255 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libhts-dev armhf 1.9-11 [4286 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.8.0-2 [1493 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf liblua5.1-0 armhf 5.1.5-8.1+b2 [82.8 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libpbbam0.19.0 armhf 0.19.0+dfsg-4+rpi1 [455 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libssl-dev armhf 1.1.1c-1 [1563 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libpbbam-dev armhf 0.19.0+dfsg-4+rpi1 [93.4 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libpbcopper-dev armhf 0.4.1+dfsg-3 [299 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7 armhf 2.7.16-3 [873 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-dev armhf 2.7.16-3 [30.9 MB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libpython2-dev armhf 2.7.16-1 [20.9 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libpython-dev armhf 2.7.16-1 [20.9 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libpython-all-dev armhf 2.7.16-1 [1064 B]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libseqan2-dev all 2.4.0+dfsg-11 [1220 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libyaml-0-2 armhf 0.2.1-1 [38.8 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf pandoc-data all 2.2.1-3 [329 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf pandoc armhf 2.2.1-3+b2 [17.5 MB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf python-all armhf 2.7.16-1 [1044 B]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf python2.7-dev armhf 2.7.16-3 [284 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf python2-dev armhf 2.7.16-1 [1216 B]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf python-dev armhf 2.7.16-1 [1192 B]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf python-all-dev armhf 2.7.16-1 [1068 B]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf python-pkg-resources all 41.0.1-1 [183 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf python-numpy armhf 1:1.16.2-1 [1856 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf python-setuptools all 41.0.1-1 [383 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf swig3.0 armhf 3.0.12-2 [1221 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf swig armhf 3.0.12-2 [310 kB]
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Setting up libgfortran5:armhf (9.1.0-10+rpi1) ...
Setting up autoconf (2.69-11) ...
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Setting up groff-base (1.22.4-3) ...
Setting up libcurl4:armhf (7.65.3-1) ...
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Setting up python (2.7.16-1) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up man-db (2.8.6.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
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Setting up libblas3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up python-setuptools (41.0.1-1) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Setting up python-numpy (1:1.16.2-1) ...
Setting up po-debconf (1.0.21) ...
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Setting up libpbbam0.19.0:armhf (0.19.0+dfsg-4+rpi1) ...
Setting up libpbbam-dev (0.19.0+dfsg-4+rpi1) ...
Setting up python-all-dev (2.7.16-1) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.5.3) ...
Setting up dh-strip-nondeterminism (1.5.0-1) ...
Setting up sbuild-build-depends-unanimity-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-10+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.15.0-58-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-16+rpi1 dpkg-dev_1.19.7 g++-8_8.3.0-6+rpi1 gcc-8_8.3.0-6+rpi1 libc6-dev_2.28-10+rpi1 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3+rpi1 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16+rpi1 binutils-arm-linux-gnueabihf_2.31.1-16+rpi1 binutils-common_2.31.1-16+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9.1 cmake_3.13.4-1 cmake-data_3.13.4-1 coreutils_8.30-3 cpp_4:8.3.0-1+rpi2 cpp-8_8.3.0-6+rpi1 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.5.3 debianutils_4.8.6.1 dh-autoreconf_19 dh-python_4.20190722 dh-strip-nondeterminism_1.5.0-1 diffutils_1:3.7-3 dirmngr_2.2.12-1+rpi1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.37-5 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1+rpi2 g++-8_8.3.0-6+rpi1 gcc_4:8.3.0-1+rpi2 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b1 gcc-7-base_7.3.0-19 gcc-8_8.3.0-6+rpi1 gcc-8-base_8.3.0-6+rpi1 gcc-9-base_9.1.0-10+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.12-1+rpi1 gnupg-l10n_2.2.12-1+rpi1 gnupg-utils_2.2.12-1+rpi1 gpg_2.2.12-1+rpi1 gpg-agent_2.2.12-1+rpi1 gpg-wks-client_2.2.12-1+rpi1 gpg-wks-server_2.2.12-1+rpi1 gpgconf_2.2.12-1+rpi1 gpgsm_2.2.12-1+rpi1 gpgv_2.2.12-1+rpi1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libarchive13_3.3.3-4 libasan5_8.3.0-6+rpi1 libassuan0_2.5.2-1 libatomic1_8.3.0-6+rpi1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16+rpi1 libblas3_3.8.0-2 libblkid1_2.33.1-0.1 libboost-dev_1.67.0.2 libboost1.67-dev_1.67.0-13 libbsd0_0.10.0-1 libbz2-1.0_1.0.6-9.1 libc-bin_2.28-10+rpi1 libc-dev-bin_2.28-10+rpi1 libc6_2.28-10+rpi1 libc6-dev_2.28-10+rpi1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-6+rpi1 libcom-err2_1.44.5-1 libcroco3_0.6.13-1 libcurl3-gnutls_7.65.3-1 libcurl4_7.65.3-1 libdb5.3_5.3.28+dfsg1-0.5 libdebconfclient0_0.249 libdeflate0_1.2-1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.7-1 libexpat1-dev_2.2.7-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.5.0-1 libgcc-8-dev_8.3.0-6+rpi1 libgcc1_1:8.3.0-6+rpi1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libgfortran5_9.1.0-10+rpi1 libglib2.0-0_2.60.6-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-4 libgomp1_8.3.0-6+rpi1 libgpg-error0_1.35-1 libgssapi-krb5-2_1.17-6+b1 libhogweed4_3.4.1-1 libhts-dev_1.9-11 libhts2_1.9-11 libicu63_63.2-2 libidn2-0_2.0.5-1 libisl19_0.20-2 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-6+b1 libkeyutils1_1.6-6 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 liblapack3_3.8.0-2 libldap-2.4-2_2.4.47+dfsg-3+rpi1 libldap-common_2.4.47+dfsg-3+rpi1 liblocale-gettext-perl_1.07-3+b3 liblua5.1-0_5.1.5-8.1+b2 liblz4-1_1.8.3-1 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.4.1-1 libnghttp2-14_1.39.2-1 libnpth0_1.6-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpbbam-dev_0.19.0+dfsg-4+rpi1 libpbbam0.19.0_0.19.0+dfsg-4+rpi1 libpbcopper-dev_0.4.1+dfsg-3 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libpython-all-dev_2.7.16-1 libpython-dev_2.7.16-1 libpython-stdlib_2.7.16-1 libpython2-dev_2.7.16-1 libpython2-stdlib_2.7.16-1 libpython2.7_2.7.16-3 libpython2.7-dev_2.7.16-3 libpython2.7-minimal_2.7.16-3 libpython2.7-stdlib_2.7.16-3 libpython3-stdlib_3.7.3-1 libpython3.7-minimal_3.7.4-2 libpython3.7-stdlib_3.7.4-2 libreadline7_7.0-5 libreadline8_8.0-2 librhash0_1.3.8-1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libseqan2-dev_2.4.0+dfsg-11 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.27.2-3 libss2_1.44.5-1 libssh2-1_1.8.0-2.1 libssl-dev_1.1.1c-1 libssl1.1_1.1.1c-1 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_241-5+rpi1 libtasn1-6_4.14-2 libtext-charwidth-perl_0.04-7.1+b1 libtext-iconv-perl_1.7-5+b10 libtext-wrapi18n-perl_0.06-7.1 libtinfo5_6.1+20190803-1 libtinfo6_6.1+20190803-1 libtool_2.4.6-9 libubsan1_8.3.0-6+rpi1 libuchardet0_0.0.6-3 libudev1_241-5+rpi1 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libuv1_1.30.1-1 libxml2_2.9.4+dfsg1-7+b2 libyaml-0-2_0.2.1-1 libzstd1_1.3.8+dfsg-3+rpi1 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2019051400+rpi1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.6.1-1 mawk_1.3.3-17 mime-support_3.63 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 netbase_5.6 pandoc_2.2.1-3+b2 pandoc-data_2.2.1-3 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-2 po-debconf_1.0.21 procps_2:3.3.15-2 python_2.7.16-1 python-all_2.7.16-1 python-all-dev_2.7.16-1 python-dev_2.7.16-1 python-minimal_2.7.16-1 python-numpy_1:1.16.2-1 python-pkg-resources_41.0.1-1 python-setuptools_41.0.1-1 python2_2.7.16-1 python2-dev_2.7.16-1 python2-minimal_2.7.16-1 python2.7_2.7.16-3 python2.7-dev_2.7.16-3 python2.7-minimal_2.7.16-3 python3_3.7.3-1 python3-distutils_3.7.4-3 python3-lib2to3_3.7.4-3 python3-minimal_3.7.3-1 python3.7_3.7.4-2 python3.7-minimal_3.7.4-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-unanimity-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 swig_3.0.12-2 swig3.0_3.0.12-2 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019a-1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Feb  6 07:18:37 2019 UTC
gpgv:                using RSA key 3AFA757FAC6EA11D2FF45DF088D24287A2D898B1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./unanimity_3.3.0+dfsg-2.1.dsc
dpkg-source: info: extracting unanimity in /<<BUILDDIR>>/unanimity-3.3.0+dfsg
dpkg-source: info: unpacking unanimity_3.3.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking unanimity_3.3.0+dfsg-2.1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying add_missing_library_files
dpkg-source: info: applying git-version.patch
dpkg-source: info: applying no-static-linking.patch
dpkg-source: info: applying do_not_refer_to_non-existing_images.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-ee3513ec-f1de-4a45-8be1-de798a471c7f
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package unanimity
dpkg-buildpackage: info: source version 3.3.0+dfsg-2.1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean \
--package=unanimity \
--no-package=python-consensuscore2 \
--buildsystem=cmake \
--builddirectory=build
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg'
dh_auto_clean
rm -f config-main
rm -f doc/JULIET.html doc/PBCCS.html
make[1]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg'
   dh_autoreconf_clean -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build
   dh_clean -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build
dh clean \
--package=python-consensuscore2 \
--no-package=unanimity \
--with python2 \
--buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg'
dh_auto_clean
I: pybuild base:217: python2.7 setup.py clean 
running clean
removing '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/.pybuild/cpython2_2.7_consensuscore2/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
rm -f config-main
rm -f doc/JULIET.html doc/PBCCS.html
make[1]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg'
   dh_autoreconf_clean -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild
   dh_clean -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild
 debian/rules build-arch
dh build-arch \
--package=unanimity \
--no-package=python-consensuscore2 \
--buildsystem=cmake \
--builddirectory=build
   dh_update_autotools_config -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build
   dh_autoreconf -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg'
dh_auto_configure -- \
-DCMAKE_EXE_LINKER_FLAGS=-pthread \
-DUNY_build_tests=OFF \
-DPYTHON_SWIG=ON \
-DZLIB_INCLUDE_DIRS=/usr/include \
-DBoost_INCLUDE_DIRS=/usr/include \
-DPacBioBAM_INCLUDE_DIRS=/usr/include \
-DPacBioBAM_LIBRARIES=/usr/lib/arm-linux-gnueabihf/libpbbam.so \
-DSEQAN_INCLUDE_DIRS=/usr/include \
-Dpbcopper_INCLUDE_DIRS=/usr/include \
-Dpbcopper_LIBRARIES=/usr/lib/arm-linux-gnueabihf/libpbcopper.a
	cd build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DCMAKE_EXE_LINKER_FLAGS=-pthread -DUNY_build_tests=OFF -DPYTHON_SWIG=ON -DZLIB_INCLUDE_DIRS=/usr/include -DBoost_INCLUDE_DIRS=/usr/include -DPacBioBAM_INCLUDE_DIRS=/usr/include -DPacBioBAM_LIBRARIES=/usr/lib/arm-linux-gnueabihf/libpbbam.so -DSEQAN_INCLUDE_DIRS=/usr/include -Dpbcopper_INCLUDE_DIRS=/usr/include -Dpbcopper_LIBRARIES=/usr/lib/arm-linux-gnueabihf/libpbcopper.a ..
-- The CXX compiler identification is GNU 8.3.0
-- The C compiler identification is GNU 8.3.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Performing Test HAS_NO_UNUSED_LOCAL_TYPEDEFS
-- Performing Test HAS_NO_UNUSED_LOCAL_TYPEDEFS - Success
-- Found PythonInterp: /usr/bin/python (found version "2.7.16") 
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_INSTALL_LIBDIR
    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_RUNSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR
    ZLIB_INCLUDE_DIRS


-- Build files have been written to: /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build
touch config-main
make[1]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg'
   dh_auto_build -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build
	cd build && make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
/usr/bin/cmake -S/<<BUILDDIR>>/unanimity-3.3.0+dfsg -B/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/CMakeFiles /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
make -f src/CMakeFiles/unanimity.dir/build.make src/CMakeFiles/unanimity.dir/depend
make -f src/CMakeFiles/cc2.dir/build.make src/CMakeFiles/cc2.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/unanimity-3.3.0+dfsg /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/unanimity.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/unanimity-3.3.0+dfsg /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/cc2.dir/DependInfo.cmake --color=
Scanning dependencies of target unanimity
make[3]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
make -f src/CMakeFiles/unanimity.dir/build.make src/CMakeFiles/unanimity.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
Scanning dependencies of target cc2
make[3]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
make -f src/CMakeFiles/cc2.dir/build.make src/CMakeFiles/cc2.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
[  3%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Consensus.cpp.o
[  3%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Filters.cpp.o
[  3%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Filters.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Filters.cpp
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Consensus.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Consensus.cpp
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/ConsensusModelFactory.cpp
[  4%] Building CXX object src/CMakeFiles/cc2.dir/__/generated/UnanimityGitHash.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -fPIC -std=c++14 -o CMakeFiles/cc2.dir/__/generated/UnanimityGitHash.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated/UnanimityGitHash.cpp
[  6%] Building CXX object src/CMakeFiles/cc2.dir/__/generated/UnanimityVersion.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -fPIC -std=c++14 -o CMakeFiles/cc2.dir/__/generated/UnanimityVersion.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated/UnanimityVersion.cpp
[  7%] Building CXX object src/CMakeFiles/cc2.dir/__/generated/ModelInternalInitializer.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -fPIC -std=c++14 -o CMakeFiles/cc2.dir/__/generated/ModelInternalInitializer.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated/ModelInternalInitializer.cpp
[  8%] Building CXX object src/CMakeFiles/cc2.dir/align/AffineAlignment.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -fPIC -std=c++14 -o CMakeFiles/cc2.dir/align/AffineAlignment.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/align/AffineAlignment.cpp
[  9%] Building CXX object src/CMakeFiles/cc2.dir/align/AlignConfig.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -fPIC -std=c++14 -o CMakeFiles/cc2.dir/align/AlignConfig.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/align/AlignConfig.cpp
[ 11%] Building CXX object src/CMakeFiles/cc2.dir/align/BandedChainAlignment.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -fPIC -std=c++14 -o CMakeFiles/cc2.dir/align/BandedChainAlignment.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/align/BandedChainAlignment.cpp
[ 12%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/GenomicConsensus.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/GenomicConsensus.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/GenomicConsensus.cpp
In file included from /usr/include/c++/8/vector:69,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/align/BandedChainAlignment.h:10,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/align/BandedChainAlignment.cpp:3:
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const PacBio::Align::Seed&}; _Tp = PacBio::Align::Seed; _Alloc = std::allocator<PacBio::Align::Seed>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<PacBio::Align::Seed>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<PacBio::Align::Seed*, std::vector<PacBio::Align::Seed> >’} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<PacBio::Align::Seed>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<PacBio::Align::Seed*, std::vector<PacBio::Align::Seed> >’} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:64,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/align/BandedChainAlignment.h:10,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/align/BandedChainAlignment.cpp:3:
/usr/include/c++/8/bits/stl_vector.h: In member function ‘std::vector<PacBio::Align::Seed> PacBio::Align::Internal::BandedChainAlignerImpl::MergeSeeds(const std::vector<PacBio::Align::Seed>&)’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::Seed*, std::vector<PacBio::Align::Seed> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::Seed*, std::vector<PacBio::Align::Seed> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
[ 13%] Building CXX object src/CMakeFiles/cc2.dir/align/LinearAlignment.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -fPIC -std=c++14 -o CMakeFiles/cc2.dir/align/LinearAlignment.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/align/LinearAlignment.cpp
[ 14%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/IPoaModel.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/IPoaModel.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/IPoaModel.cpp
[ 16%] Building CXX object src/CMakeFiles/cc2.dir/align/PairwiseAlignment.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -fPIC -std=c++14 -o CMakeFiles/cc2.dir/align/PairwiseAlignment.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/align/PairwiseAlignment.cpp
[ 17%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Input.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Input.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Input.cpp
[ 18%] Building CXX object src/CMakeFiles/cc2.dir/matrix/BasicDenseMatrix.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -fPIC -std=c++14 -o CMakeFiles/cc2.dir/matrix/BasicDenseMatrix.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/matrix/BasicDenseMatrix.cpp
[ 19%] Building CXX object src/CMakeFiles/cc2.dir/matrix/ScaledMatrix.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -fPIC -std=c++14 -o CMakeFiles/cc2.dir/matrix/ScaledMatrix.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/matrix/ScaledMatrix.cpp
[ 20%] Building CXX object src/CMakeFiles/cc2.dir/matrix/SparseMatrix.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -fPIC -std=c++14 -o CMakeFiles/cc2.dir/matrix/SparseMatrix.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/matrix/SparseMatrix.cpp
[ 22%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Intervals.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Intervals.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Intervals.cpp
[ 23%] Building CXX object src/CMakeFiles/cc2.dir/models/MarginalModelForm.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -fPIC -std=c++14 -o CMakeFiles/cc2.dir/models/MarginalModelForm.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h: In member function ‘size_t PacBio::Consensus::Recursor<Derived>::FillAlphaBeta(const PacBio::Consensus::AbstractTemplate&, PacBio::Consensus::AbstractRecursor::M&, PacBio::Consensus::AbstractRecursor::M&, double) const’:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: error: no matching function for call to ‘max(long unsigned int, size_t)’
         std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
                                                                                           ^
In file included from /usr/include/c++/8/memory:62,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:7:
/usr/include/c++/8/bits/stl_algobase.h:219:5: note: candidate: ‘template<class _Tp> constexpr const _Tp& std::max(const _Tp&, const _Tp&)’
     max(const _Tp& __a, const _Tp& __b)
     ^~~
/usr/include/c++/8/bits/stl_algobase.h:219:5: note:   template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note:   deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘size_t’ {aka ‘unsigned int’})
         std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
                                                                                           ^
In file included from /usr/include/c++/8/memory:62,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:7:
/usr/include/c++/8/bits/stl_algobase.h:265:5: note: candidate: ‘template<class _Tp, class _Compare> constexpr const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’
     max(const _Tp& __a, const _Tp& __b, _Compare __comp)
     ^~~
/usr/include/c++/8/bits/stl_algobase.h:265:5: note:   template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note:   deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘size_t’ {aka ‘unsigned int’})
         std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
                                                                                           ^
In file included from /usr/include/c++/8/algorithm:62,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/data/Read.h:5,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/consensus/ModelConfig.h:20,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:11:
/usr/include/c++/8/bits/stl_algo.h:3462:5: note: candidate: ‘template<class _Tp> constexpr _Tp std::max(std::initializer_list<_Tp>)’
     max(initializer_list<_Tp> __l)
     ^~~
/usr/include/c++/8/bits/stl_algo.h:3462:5: note:   template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note:   mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’
         std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
                                                                                           ^
In file included from /usr/include/c++/8/algorithm:62,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/data/Read.h:5,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/consensus/ModelConfig.h:20,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:11:
/usr/include/c++/8/bits/stl_algo.h:3468:5: note: candidate: ‘template<class _Tp, class _Compare> constexpr _Tp std::max(std::initializer_list<_Tp>, _Compare)’
     max(initializer_list<_Tp> __l, _Compare __comp)
     ^~~
/usr/include/c++/8/bits/stl_algo.h:3468:5: note:   template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note:   mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’
         std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
                                                                                           ^
make[3]: *** [src/CMakeFiles/cc2.dir/build.make:209: src/CMakeFiles/cc2.dir/models/MarginalModelForm.cpp.o] Error 1
make[3]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
make[2]: *** [CMakeFiles/Makefile2:177: src/CMakeFiles/cc2.dir/all] Error 2
make[2]: *** Waiting for unfinished jobs....
[ 24%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Output.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Output.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Output.cpp
[ 25%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Settings.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Settings.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Settings.cpp
[ 27%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Sorting.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Sorting.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Sorting.cpp
[ 28%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Workflow.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Workflow.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Workflow.cpp
[ 29%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/arrow/ArrowModel.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/arrow/ArrowModel.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/arrow/ArrowModel.cpp
[ 30%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/FastaWriter.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/FastaWriter.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/io/FastaWriter.cpp
[ 32%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/FastqWriter.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/FastqWriter.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/io/FastqWriter.cpp
[ 33%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/GffWriter.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/GffWriter.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/io/GffWriter.cpp
[ 34%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/VcfWriter.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/VcfWriter.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/io/VcfWriter.cpp
In file included from /usr/include/c++/8/vector:69,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/IPoaModel.h:6,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/arrow/ArrowModel.h:5,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/arrow/ArrowModel.cpp:3:
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {PacBio::Data::Read, PacBio::Data::StrandType, unsigned int, unsigned int}; _Tp = PacBio::Data::MappedRead; _Alloc = std::allocator<PacBio::Data::MappedRead>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<PacBio::Data::MappedRead>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<PacBio::Data::MappedRead*, std::vector<PacBio::Data::MappedRead> >’} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In static member function ‘static std::vector<PacBio::Data::MappedRead> PacBio::GenomicConsensus::experimental::Arrow::MakeMappedReads(const std::vector<PacBio::BAM::BamRecord>&, const PacBio::GenomicConsensus::experimental::ReferenceWindow&)’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Data::MappedRead*, std::vector<PacBio::Data::MappedRead> >’ changed in GCC 7.1
    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
    ^~~~~~~~~~~~~~~~~
[ 35%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/plurality/PluralityModel.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/plurality/PluralityModel.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/plurality/PluralityModel.cpp
[ 37%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/poa/PoaModel.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/poa/PoaModel.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/poa/PoaModel.cpp
[ 38%] Building CXX object src/CMakeFiles/unanimity.dir/ChemistryMapping.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/ChemistryMapping.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/ChemistryMapping.cpp
[ 39%] Building CXX object src/CMakeFiles/unanimity.dir/ChemistryTriple.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/ChemistryTriple.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/ChemistryTriple.cpp
[ 40%] Building CXX object src/CMakeFiles/unanimity.dir/Interval.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/Interval.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/Interval.cpp
[ 41%] Building CXX object src/CMakeFiles/unanimity.dir/ReadId.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/ReadId.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/ReadId.cpp
[ 43%] Building CXX object src/CMakeFiles/unanimity.dir/SparsePoa.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/SparsePoa.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/SparsePoa.cpp
[ 44%] Building CXX object src/CMakeFiles/unanimity.dir/SubreadResultCounter.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/SubreadResultCounter.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/SubreadResultCounter.cpp
[ 45%] Building CXX object src/CMakeFiles/unanimity.dir/Timer.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/Timer.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/Timer.cpp
[ 46%] Building CXX object src/CMakeFiles/unanimity.dir/Utility.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/Utility.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/Utility.cpp
[ 48%] Building CXX object src/CMakeFiles/unanimity.dir/ConsensusSettings.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++   -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs   -std=c++14 -o CMakeFiles/unanimity.dir/ConsensusSettings.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/ConsensusSettings.cpp
In file included from /usr/include/c++/8/map:60,
                 from /usr/include/pbcopper/json/internal/json.hpp:54,
                 from /usr/include/pbcopper/json/JSON.h:7,
                 from /usr/include/pbcopper/cli/Option.h:14,
                 from /usr/include/pbcopper/cli/Interface.h:11,
                 from /usr/include/pbcopper/cli/CLI.h:12,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/ccs/ConsensusSettings.h:9,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/ConsensusSettings.cpp:3:
/usr/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >; _Compare = std::less<void>; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >]’:
/usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
       _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/map:61,
                 from /usr/include/pbcopper/json/internal/json.hpp:54,
                 from /usr/include/pbcopper/json/JSON.h:7,
                 from /usr/include/pbcopper/cli/Option.h:14,
                 from /usr/include/pbcopper/cli/Interface.h:11,
                 from /usr/include/pbcopper/cli/CLI.h:12,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/ccs/ConsensusSettings.h:9,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/ConsensusSettings.cpp:3:
/usr/include/c++/8/bits/stl_map.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](T*) [with T = const char; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> >, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >, std::less<void>, std::allocator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, nlohmann::basic_json<> > >’} changed in GCC 7.1
    __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/8/algorithm:62,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/SparsePoa.cpp:3:
/usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const PacBio::Align::Seed&, const PacBio::Align::Seed&)>]’:
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
     __unguarded_linear_insert(_RandomAccessIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PacBio::Align::Seed&, const PacBio::Align::Seed&)>]’:
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
     __insertion_sort(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const PacBio::Align::{anonymous}::SDPHit&, const PacBio::Align::{anonymous}::SDPHit&)>]’:
/usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
     __unguarded_linear_insert(_RandomAccessIterator __last,
     ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/bits/stl_algo.h:61,
                 from /usr/include/c++/8/algorithm:62,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/SparsePoa.cpp:3:
/usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >; _Distance = int; _Tp = PacBio::Align::{anonymous}::SDPHit; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PacBio::Align::Seed&, const PacBio::Align::Seed&)>]’:
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
     ^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >; _Distance = int; _Tp = PacBio::Align::{anonymous}::SDPHit; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PacBio::Align::{anonymous}::SDPHit&, const PacBio::Align::{anonymous}::SDPHit&)>]’:
/usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
In file included from /usr/include/c++/8/map:60,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/ccs/SparseAlignment.h:5,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/SparsePoa.cpp:14:
/usr/include/c++/8/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = PacBio::Align::{anonymous}::SDPHit; _Val = PacBio::Align::{anonymous}::SDPHit; _KeyOfValue = std::_Identity<PacBio::Align::{anonymous}::SDPHit>; _Compare = std::less<PacBio::Align::{anonymous}::SDPHit>; _Alloc = std::allocator<PacBio::Align::{anonymous}::SDPHit>]’:
/usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type ‘std::_Rb_tree<PacBio::Align::{anonymous}::SDPHit, PacBio::Align::{anonymous}::SDPHit, std::_Identity<PacBio::Align::{anonymous}::SDPHit>, std::less<PacBio::Align::{anonymous}::SDPHit>, std::allocator<PacBio::Align::{anonymous}::SDPHit> >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<PacBio::Align::{anonymous}::SDPHit>’} changed in GCC 7.1
     _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/algorithm:62,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/SparsePoa.cpp:3:
/usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PacBio::Align::{anonymous}::SDPHit&, const PacBio::Align::{anonymous}::SDPHit&)>]’:
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
     __insertion_sort(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PacBio::Align::{anonymous}::SDPHit&, const PacBio::Align::{anonymous}::SDPHit&)>]’:
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const PacBio::Align::Seed&, const PacBio::Align::Seed&)>]’:
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
     __introsort_loop(_RandomAccessIterator __first,
     ^~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h: In function ‘void PacBio::Align::{anonymous}::ChainSeedsImpl(std::priority_queue<PacBio::Align::{anonymous}::ChainHit, std::vector<PacBio::Align::{anonymous}::ChainHit>, PacBio::Align::{anonymous}::ChainHitCompare>*, std::vector<boost::optional<unsigned int> >*, std::vector<PacBio::Align::{anonymous}::SDPHit>*, std::vector<long int>&, size_t, const PacBio::Align::ChainSeedsConfig&)’:
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
    std::__introsort_loop(__first, __last,
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
     std::__lg(__last - __first) * 2,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     __comp);
     ~~~~~~~              
/usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::{anonymous}::SDPHit*, std::vector<PacBio::Align::{anonymous}::SDPHit> >’ changed in GCC 7.1
  std::__insertion_sort(__first, __last, __comp);
  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/SparsePoa.cpp:7:
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const PacBio::Align::Seed&}; _Tp = PacBio::Align::Seed; _Alloc = std::allocator<PacBio::Align::Seed>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<PacBio::Align::Seed>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<PacBio::Align::Seed*, std::vector<PacBio::Align::Seed> >’} changed in GCC 7.1
       vector<_Tp, _Alloc>::
       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
     vector<_Tp, _Alloc>::
     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/SparsePoa.cpp:7:
/usr/include/c++/8/bits/stl_vector.h: In member function ‘void PacBio::QGram::internal::IndexImpl::Init()’:
/usr/include/c++/8/bits/stl_vector.h:847:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
    _M_fill_insert(end(), __new_size - size(), __x);
    ^~~~~~~~~~~~~~
In file included from /usr/include/pbcopper/qgram/Index.h:77,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/align/FindSeeds.h:11,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/align/SparseAlignment.h:16,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/ccs/SparseAlignment.h:18,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/SparsePoa.cpp:14:
/usr/include/pbcopper/qgram/internal/Index-inl.h:106:1: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
 }
 ^
In file included from /usr/include/c++/8/vector:64,
                 from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/SparsePoa.cpp:7:
/usr/include/c++/8/bits/stl_vector.h: In member function ‘virtual PacBio::Poa::detail::SdpAnchorVector PacBio::Poa::SdpRangeFinder::FindAnchors(const string&, const string&) const’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::Seed*, std::vector<PacBio::Align::Seed> >’ changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
[ 49%] Linking CXX static library libunanimity.a
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/cmake -P CMakeFiles/unanimity.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/unanimity.dir/link.txt --verbose=1
/usr/bin/ar qc libunanimity.a  CMakeFiles/unanimity.dir/genomicconsensus/experimental/Consensus.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Filters.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/GenomicConsensus.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/IPoaModel.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Input.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Intervals.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Output.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Settings.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Sorting.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Workflow.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/arrow/ArrowModel.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/FastaWriter.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/FastqWriter.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/GffWriter.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/io/VcfWriter.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/plurality/PluralityModel.cpp.o CMakeFiles/unanimity.dir/genomicconsensus/experimental/poa/PoaModel.cpp.o CMakeFiles/unanimity.dir/ChemistryMapping.cpp.o CMakeFiles/unanimity.dir/ChemistryTriple.cpp.o CMakeFiles/unanimity.dir/Interval.cpp.o CMakeFiles/unanimity.dir/ReadId.cpp.o CMakeFiles/unanimity.dir/SparsePoa.cpp.o CMakeFiles/unanimity.dir/SubreadResultCounter.cpp.o CMakeFiles/unanimity.dir/Timer.cpp.o CMakeFiles/unanimity.dir/Utility.cpp.o CMakeFiles/unanimity.dir/ConsensusSettings.cpp.o
/usr/bin/ranlib libunanimity.a
make[3]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
[ 49%] Built target unanimity
make[2]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
make[1]: *** [Makefile:133: all] Error 2
make[1]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
dh_auto_build: cd build && make -j4 "INSTALL=install --strip-program=true" returned exit code 2
make: *** [debian/rules:28: build-arch] Error 255
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2019-08-24T01:29:37Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 122864
Build-Time: 183
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 632
Job: unanimity_3.3.0+dfsg-2.1
Machine Architecture: armhf
Package: unanimity
Package-Time: 834
Source-Version: 3.3.0+dfsg-2.1
Space: 122864
Status: attempted
Version: 3.3.0+dfsg-2.1
--------------------------------------------------------------------------------
Finished at 2019-08-24T01:29:37Z
Build needed 00:13:54, 122864k disk space