Raspbian Package Auto-Building

Build log for umis (1.0.8-1) on armhf

umis1.0.8-1armhf → 2021-10-14 14:15:51

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01

+==============================================================================+
| umis 1.0.8-1 (armhf)                         Thu, 14 Oct 2021 14:04:44 +0000 |
+==============================================================================+

Package: umis
Version: 1.0.8-1
Source Version: 1.0.8-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-738f7c38-3617-4954-9f67-6fdb3a1bbbf3' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.9 MB in 27s (962 kB/s)
Reading package lists...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'umis' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/umis.git
Please use:
git clone https://salsa.debian.org/med-team/umis.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 255 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main umis 1.0.8-1 (dsc) [2060 B]
Get:2 http://172.17.0.1/private bookworm-staging/main umis 1.0.8-1 (tar) [248 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main umis 1.0.8-1 (diff) [5032 B]
Fetched 255 kB in 0s (1612 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/umis-8XpwPX/umis-1.0.8' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/umis-8XpwPX' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ycb63E/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ycb63E/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ycb63E/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ycb63E/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ycb63E/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ycb63E/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-ycb63E/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-ycb63E/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ycb63E/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2908 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-ycb63E/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-ycb63E/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 34 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ycb63E/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.8 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-python, cython3, python3-dev, python3-setuptools, python3-pysam
Filtered Build-Depends: debhelper-compat (= 13), dh-python, cython3, python3-dev, python3-setuptools, python3-pysam
dpkg-deb: building package 'sbuild-build-depends-umis-dummy' in '/<<BUILDDIR>>/resolver-ycb63E/apt_archive/sbuild-build-depends-umis-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-umis-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ycb63E/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ycb63E/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ycb63E/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-ycb63E/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-ycb63E/apt_archive ./ Sources [526 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ycb63E/apt_archive ./ Packages [600 B]
Fetched 2459 B in 1s (3285 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-ycb63E/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-ycb63E/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...

Install umis build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils cython3 debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1
  libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1
  libexpat1-dev libffi8 libfile-stripnondeterminism-perl libhts3 libhtscodecs2
  libicu67 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc
  libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-dev
  libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
  libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1 libsub-override-perl
  libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3
  python3-dev python3-distutils python3-lib2to3 python3-minimal
  python3-pkg-resources python3-pysam python3-setuptools python3.9
  python3.9-dev python3.9-minimal sensible-utils zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc cython-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
  | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
  libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc
  python3.9-venv python3.9-doc binfmt-support
Recommended packages:
  curl | wget | lynx ca-certificates libarchive-cpio-perl javascript-common
  publicsuffix libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils cython3 debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1
  libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1
  libexpat1-dev libffi8 libfile-stripnondeterminism-perl libhts3 libhtscodecs2
  libicu67 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc
  libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5 libpython3-dev
  libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
  libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1 libsub-override-perl
  libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3
  python3-dev python3-distutils python3-lib2to3 python3-minimal
  python3-pkg-resources python3-pysam python3-setuptools python3.9
  python3.9-dev python3.9-minimal sbuild-build-depends-umis-dummy
  sensible-utils zlib1g-dev
0 upgraded, 69 newly installed, 0 to remove and 34 not upgraded.
Need to get 33.0 MB of archives.
After this operation, 124 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ycb63E/apt_archive ./ sbuild-build-depends-umis-dummy 0.invalid.0 [888 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-3 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.7-4+rpi1 [794 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-2 [80.3 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.7-4+rpi1 [1632 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf libffi8 armhf 3.4.2-2 [21.2 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.7-4+rpi1 [1618 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf python3.9 armhf 3.9.7-4+rpi1 [480 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf python3 armhf 3.9.2-3 [37.9 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf cython3 armhf 0.29.21-3+b1 [1234 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.7-1 [79.4 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf python3-distutils all 3.9.7-1 [146 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf dh-python all 4.20201102+nmu1 [99.4 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.74.0-1.3 [301 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.8-1 [44.1 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.1-2 [135 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.1.1-3 [49.8 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libhts3 armhf 1.13+ds-2 [339 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libjs-underscore all 1.9.1~dfsg-4 [100 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.2.0-4 [137 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.7-4+rpi1 [1416 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.7-4+rpi1 [3060 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libpython3-dev armhf 3.9.2-3 [21.7 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.7-4+rpi1 [501 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf python3-dev armhf 3.9.2-3 [24.8 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf python3-pkg-resources all 52.0.0-4 [190 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf python3-pysam armhf 0.15.4+ds-3+b1 [1344 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf python3-setuptools all 52.0.0-4 [366 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 33.0 MB in 4s (8541 kB/s)
Selecting previously unselected package bsdextrautils.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../0-bsdextrautils_2.37.2-3_armhf.deb ...
Unpacking bsdextrautils (2.37.2-3) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../1-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../2-groff-base_1.22.4-7_armhf.deb ...
Unpacking groff-base (1.22.4-7) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../3-libpipeline1_1.5.3-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.3-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../4-man-db_2.9.4-2_armhf.deb ...
Unpacking man-db (2.9.4-2) ...
Selecting previously unselected package libpython3.9-minimal:armhf.
Preparing to unpack .../5-libpython3.9-minimal_3.9.7-4+rpi1_armhf.deb ...
Unpacking libpython3.9-minimal:armhf (3.9.7-4+rpi1) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../6-libexpat1_2.4.1-2_armhf.deb ...
Unpacking libexpat1:armhf (2.4.1-2) ...
Selecting previously unselected package python3.9-minimal.
Preparing to unpack .../7-python3.9-minimal_3.9.7-4+rpi1_armhf.deb ...
Unpacking python3.9-minimal (3.9.7-4+rpi1) ...
Setting up libpython3.9-minimal:armhf (3.9.7-4+rpi1) ...
Setting up libexpat1:armhf (2.4.1-2) ...
Setting up python3.9-minimal (3.9.7-4+rpi1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 13351 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.9.2-3_armhf.deb ...
Unpacking python3-minimal (3.9.2-3) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_4.0.0_all.deb ...
Unpacking media-types (4.0.0) ...
Selecting previously unselected package libffi8:armhf.
Preparing to unpack .../2-libffi8_3.4.2-2_armhf.deb ...
Unpacking libffi8:armhf (3.4.2-2) ...
Selecting previously unselected package libmpdec3:armhf.
Preparing to unpack .../3-libmpdec3_2.5.1-2+rpi1_armhf.deb ...
Unpacking libmpdec3:armhf (2.5.1-2+rpi1) ...
Selecting previously unselected package libpython3.9-stdlib:armhf.
Preparing to unpack .../4-libpython3.9-stdlib_3.9.7-4+rpi1_armhf.deb ...
Unpacking libpython3.9-stdlib:armhf (3.9.7-4+rpi1) ...
Selecting previously unselected package python3.9.
Preparing to unpack .../5-python3.9_3.9.7-4+rpi1_armhf.deb ...
Unpacking python3.9 (3.9.7-4+rpi1) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../6-libpython3-stdlib_3.9.2-3_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.9.2-3) ...
Setting up python3-minimal (3.9.2-3) ...
Selecting previously unselected package python3.
(Reading database ... 13754 files and directories currently installed.)
Preparing to unpack .../00-python3_3.9.2-3_armhf.deb ...
Unpacking python3 (3.9.2-3) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../01-sensible-utils_0.0.17_all.deb ...
Unpacking sensible-utils (0.0.17) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../02-libmagic-mgc_1%3a5.39-3_armhf.deb ...
Unpacking libmagic-mgc (1:5.39-3) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../03-libmagic1_1%3a5.39-3_armhf.deb ...
Unpacking libmagic1:armhf (1:5.39-3) ...
Selecting previously unselected package file.
Preparing to unpack .../04-file_1%3a5.39-3_armhf.deb ...
Unpacking file (1:5.39-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../05-gettext-base_0.21-4_armhf.deb ...
Unpacking gettext-base (0.21-4) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../06-libsigsegv2_2.13-1_armhf.deb ...
Unpacking libsigsegv2:armhf (2.13-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../07-m4_1.4.18-5_armhf.deb ...
Unpacking m4 (1.4.18-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../08-autoconf_2.71-2_all.deb ...
Unpacking autoconf (2.71-2) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../09-autotools-dev_20180224.1+nmu1_all.deb ...
Unpacking autotools-dev (20180224.1+nmu1) ...
Selecting previously unselected package automake.
Preparing to unpack .../10-automake_1%3a1.16.4-2_all.deb ...
Unpacking automake (1:1.16.4-2) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../11-autopoint_0.21-4_all.deb ...
Unpacking autopoint (0.21-4) ...
Selecting previously unselected package cython3.
Preparing to unpack .../12-cython3_0.29.21-3+b1_armhf.deb ...
Unpacking cython3 (0.29.21-3+b1) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../13-libdebhelper-perl_13.5.2_all.deb ...
Unpacking libdebhelper-perl (13.5.2) ...
Selecting previously unselected package libtool.
Preparing to unpack .../14-libtool_2.4.6-15_all.deb ...
Unpacking libtool (2.4.6-15) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../15-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../16-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../17-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../18-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../19-dh-strip-nondeterminism_1.12.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.12.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../20-libelf1_0.185-2_armhf.deb ...
Unpacking libelf1:armhf (0.185-2) ...
Selecting previously unselected package dwz.
Preparing to unpack .../21-dwz_0.14-1_armhf.deb ...
Unpacking dwz (0.14-1) ...
Selecting previously unselected package libicu67:armhf.
Preparing to unpack .../22-libicu67_67.1-7_armhf.deb ...
Unpacking libicu67:armhf (67.1-7) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../23-libxml2_2.9.12+dfsg-5_armhf.deb ...
Unpacking libxml2:armhf (2.9.12+dfsg-5) ...
Selecting previously unselected package gettext.
Preparing to unpack .../24-gettext_0.21-4_armhf.deb ...
Unpacking gettext (0.21-4) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../25-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../26-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../27-debhelper_13.5.2_all.deb ...
Unpacking debhelper (13.5.2) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../28-python3-lib2to3_3.9.7-1_all.deb ...
Unpacking python3-lib2to3 (3.9.7-1) ...
Selecting previously unselected package python3-distutils.
Preparing to unpack .../29-python3-distutils_3.9.7-1_all.deb ...
Unpacking python3-distutils (3.9.7-1) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../30-dh-python_4.20201102+nmu1_all.deb ...
Unpacking dh-python (4.20201102+nmu1) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../31-libbrotli1_1.0.9-2+b1_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.9-2+b1) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../32-libnghttp2-14_1.43.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.43.0-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../33-libpsl5_0.21.0-1.2_armhf.deb ...
Unpacking libpsl5:armhf (0.21.0-1.2) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../34-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../35-libssh2-1_1.10.0-2_armhf.deb ...
Unpacking libssh2-1:armhf (1.10.0-2) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../36-libcurl3-gnutls_7.74.0-1.3_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.74.0-1.3) ...
Selecting previously unselected package libdeflate0:armhf.
Preparing to unpack .../37-libdeflate0_1.8-1_armhf.deb ...
Unpacking libdeflate0:armhf (1.8-1) ...
Selecting previously unselected package libexpat1-dev:armhf.
Preparing to unpack .../38-libexpat1-dev_2.4.1-2_armhf.deb ...
Unpacking libexpat1-dev:armhf (2.4.1-2) ...
Selecting previously unselected package libhtscodecs2:armhf.
Preparing to unpack .../39-libhtscodecs2_1.1.1-3_armhf.deb ...
Unpacking libhtscodecs2:armhf (1.1.1-3) ...
Selecting previously unselected package libhts3:armhf.
Preparing to unpack .../40-libhts3_1.13+ds-2_armhf.deb ...
Unpacking libhts3:armhf (1.13+ds-2) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../41-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ...
Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ...
Selecting previously unselected package libjs-underscore.
Preparing to unpack .../42-libjs-underscore_1.9.1~dfsg-4_all.deb ...
Unpacking libjs-underscore (1.9.1~dfsg-4) ...
Selecting previously unselected package libjs-sphinxdoc.
Preparing to unpack .../43-libjs-sphinxdoc_4.2.0-4_all.deb ...
Unpacking libjs-sphinxdoc (4.2.0-4) ...
Selecting previously unselected package libpython3.9:armhf.
Preparing to unpack .../44-libpython3.9_3.9.7-4+rpi1_armhf.deb ...
Unpacking libpython3.9:armhf (3.9.7-4+rpi1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../45-zlib1g-dev_1%3a1.2.11.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Selecting previously unselected package libpython3.9-dev:armhf.
Preparing to unpack .../46-libpython3.9-dev_3.9.7-4+rpi1_armhf.deb ...
Unpacking libpython3.9-dev:armhf (3.9.7-4+rpi1) ...
Selecting previously unselected package libpython3-dev:armhf.
Preparing to unpack .../47-libpython3-dev_3.9.2-3_armhf.deb ...
Unpacking libpython3-dev:armhf (3.9.2-3) ...
Selecting previously unselected package python3.9-dev.
Preparing to unpack .../48-python3.9-dev_3.9.7-4+rpi1_armhf.deb ...
Unpacking python3.9-dev (3.9.7-4+rpi1) ...
Selecting previously unselected package python3-dev.
Preparing to unpack .../49-python3-dev_3.9.2-3_armhf.deb ...
Unpacking python3-dev (3.9.2-3) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../50-python3-pkg-resources_52.0.0-4_all.deb ...
Unpacking python3-pkg-resources (52.0.0-4) ...
Selecting previously unselected package python3-pysam.
Preparing to unpack .../51-python3-pysam_0.15.4+ds-3+b1_armhf.deb ...
Unpacking python3-pysam (0.15.4+ds-3+b1) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../52-python3-setuptools_52.0.0-4_all.deb ...
Unpacking python3-setuptools (52.0.0-4) ...
Selecting previously unselected package sbuild-build-depends-umis-dummy.
Preparing to unpack .../53-sbuild-build-depends-umis-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-umis-dummy (0.invalid.0) ...
Setting up libhtscodecs2:armhf (1.1.1-3) ...
Setting up media-types (4.0.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up bsdextrautils (2.37.2-3) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.5.2) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up libnghttp2-14:armhf (1.43.0-1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up libdeflate0:armhf (1.8-1) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libexpat1-dev:armhf (2.4.1-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up autopoint (0.21-4) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libffi8:armhf (3.4.2-2) ...
Setting up sensible-utils (0.0.17) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libmpdec3:armhf (2.5.1-2+rpi1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.10.0-2) ...
Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up libpython3.9-stdlib:armhf (3.9.7-4+rpi1) ...
Setting up libpython3-stdlib:armhf (3.9.2-3) ...
Setting up libjs-underscore (1.9.1~dfsg-4) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up gettext (0.21-4) ...
Setting up libtool (2.4.6-15) ...
Setting up m4 (1.4.18-5) ...
Setting up libcurl3-gnutls:armhf (7.74.0-1.3) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libpython3.9:armhf (3.9.7-4+rpi1) ...
Setting up libjs-sphinxdoc (4.2.0-4) ...
Setting up autoconf (2.71-2) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-7) ...
Setting up python3.9 (3.9.7-4+rpi1) ...
Setting up automake (1:1.16.4-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhts3:armhf (1.13+ds-2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpython3.9-dev:armhf (3.9.7-4+rpi1) ...
Setting up python3 (3.9.2-3) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up cython3 (0.29.21-3+b1) ...
Setting up python3.9-dev (3.9.7-4+rpi1) ...
Setting up python3-lib2to3 (3.9.7-1) ...
Setting up python3-pkg-resources (52.0.0-4) ...
Setting up python3-distutils (3.9.7-1) ...
Setting up dh-python (4.20201102+nmu1) ...
Setting up python3-pysam (0.15.4+ds-3+b1) ...
Setting up libpython3-dev:armhf (3.9.2-3) ...
Setting up python3-setuptools (52.0.0-4) ...
Setting up debhelper (13.5.2) ...
Setting up python3-dev (3.9.2-3) ...
Setting up sbuild-build-depends-umis-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-9+rpi1 gcc-10_10.3.0-9+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-3 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-9+rpi1 cython3_0.29.21-3+b1 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-python_4.20201102+nmu1 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-9+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-9+rpi1 gcc-10-base_10.3.0-9+rpi1 gcc-11-base_11.2.0-4+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libasan6_11.2.0-4+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-4+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-5+rpi1 libblkid1_2.37.2-1 libbrotli1_1.0.9-2+b1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-4+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl3-gnutls_7.74.0-1.3 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdeflate0_1.8-1 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libexpat1_2.4.1-2 libexpat1-dev_2.4.1-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libffi8_3.4.2-2 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.3.0-9+rpi1 libgcc-s1_11.2.0-4+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-4+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libhts3_1.13+ds-2 libhtscodecs2_1.1.1-3 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.23-1 libjs-jquery_3.5.1+dfsg+~3.5.5-7 libjs-sphinxdoc_4.2.0-4 libjs-underscore_1.9.1~dfsg-4 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.2 libpython3-dev_3.9.2-3 libpython3-stdlib_3.9.2-3 libpython3.9_3.9.7-4+rpi1 libpython3.9-dev_3.9.7-4+rpi1 libpython3.9-minimal_3.9.7-4+rpi1 libpython3.9-stdlib_3.9.7-4+rpi1 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-1 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.9-1+rpi1 libtasn1-6_4.17.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-4+rpi1 libuchardet0_0.0.7-1 libudev1_247.9-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mount_2.37.2-1 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python3_3.9.2-3 python3-dev_3.9.2-3 python3-distutils_3.9.7-1 python3-lib2to3_3.9.7-1 python3-minimal_3.9.2-3 python3-pkg-resources_52.0.0-4 python3-pysam_0.15.4+ds-3+b1 python3-setuptools_52.0.0-4 python3.9_3.9.7-4+rpi1 python3.9-dev_3.9.7-4+rpi1 python3.9-minimal_3.9.7-4+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-umis-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.37.2-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig._FLE6PfZ/trustedkeys.kbx': General error
gpgv: Signature made Tue Oct 12 07:18:29 2021 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./umis_1.0.8-1.dsc
dpkg-source: info: extracting umis in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking umis_1.0.8.orig.tar.gz
dpkg-source: info: unpacking umis_1.0.8-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_bashism.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-738f7c38-3617-4954-9f67-6fdb3a1bbbf3
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package umis
dpkg-buildpackage: info: source version 1.0.8-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:232: python3.9 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_umis/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
rm -rf umis.egg-info
rm -f umis/utils.c
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py config 
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_umis/build/umis
copying umis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_umis/build/umis
copying umis/barcodes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_umis/build/umis
copying umis/umis.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_umis/build/umis
running build_ext
cythoning umis/utils.pyx to umis/utils.c
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/umis/utils.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
building 'utils' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/umis
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c umis/utils.c -o build/temp.linux-armhf-3.9/umis/utils.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/umis/utils.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_umis/build/utils.cpython-39-arm-linux-gnueabihf.so
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_umis/build; python3.9 -m unittest discover -v 

----------------------------------------------------------------------
Ran 0 tests in 0.000s

OK
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-umis 
running install
running build
running build_py
running build_ext
skipping 'umis/utils.c' Cython extension (up-to-date)
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-umis
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.9/dist-packages/umis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_umis/build/umis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.9/dist-packages/umis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_umis/build/umis/barcodes.py -> /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.9/dist-packages/umis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_umis/build/umis/umis.py -> /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.9/dist-packages/umis
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.9/dist-packages/umis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_umis/build/umis/__pycache__/__init__.cpython-39.pyc -> /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.9/dist-packages/umis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_umis/build/utils.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.9/dist-packages
byte-compiling /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.9/dist-packages/umis/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.9/dist-packages/umis/barcodes.py to barcodes.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.9/dist-packages/umis/umis.py to umis.cpython-39.pyc
running install_egg_info
running egg_info
creating umis.egg-info
writing umis.egg-info/PKG-INFO
writing dependency_links to umis.egg-info/dependency_links.txt
writing entry points to umis.egg-info/entry_points.txt
writing requirements to umis.egg-info/requires.txt
writing top-level names to umis.egg-info/top_level.txt
writing manifest file 'umis.egg-info/SOURCES.txt'
reading manifest file 'umis.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'umis.egg-info/SOURCES.txt'
Copying umis.egg-info to /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.9/dist-packages/umis-1.0.8.egg-info
Skipping SOURCES.txt
running install_scripts
Installing umis script to /<<PKGBUILDDIR>>/debian/python3-umis/usr/bin
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
mkdir -p debian/umis
mv debian/python3-umis/usr debian/umis
rmdir debian/python3-umis
find debian -type d -name __pycache__ | xargs rm -rf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a -O--buildsystem=pybuild
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_installman -a -O--buildsystem=pybuild
   dh_python3 -a -O--buildsystem=pybuild
   dh_installsystemduser -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_missing -a -O--buildsystem=pybuild
   dh_dwz -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package umis: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package umis: substitution variable ${python3:Versions} unused, but is defined
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'umis-dbgsym' in '../umis-dbgsym_1.0.8-1_armhf.deb'.
dpkg-deb: building package 'umis' in '../umis_1.0.8-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../umis_1.0.8-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-10-14T14:15:47Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


umis_1.0.8-1_armhf.changes:
---------------------------

Format: 1.8
Date: Tue, 12 Oct 2021 09:04:50 +0200
Source: umis
Binary: umis umis-dbgsym
Architecture: armhf
Version: 1.0.8-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 umis       - tools for processing UMI RNA-tag data
Changes:
 umis (1.0.8-1) unstable; urgency=medium
 .
   * Fix watchfile to detect new versions on github
   * New upstream version
   * Standards-Version: 4.6.0 (routine-update)
   * debhelper-compat 13 (routine-update)
   * Update renamed lintian tag names in lintian overrides.
   * Apply multi-arch hints.
     + umis-examples: Add Multi-Arch: foreign.
Checksums-Sha1:
 7ffb73000f1e3ebd1f73f9a0fa22d1b0c0e4c5aa 27116 umis-dbgsym_1.0.8-1_armhf.deb
 f6dd85be2b2cad7a36ce3f4d3448f43b64d2a937 6364 umis_1.0.8-1_armhf.buildinfo
 97764bd45abe981f7461db01f29dab47f2c12570 24952 umis_1.0.8-1_armhf.deb
Checksums-Sha256:
 d52d5b4caed7ea9b1879b1ab26fd1358a3bef4d12e62759c90b277ea64788f19 27116 umis-dbgsym_1.0.8-1_armhf.deb
 ccee9ad4fcd772a639b3a2fa83453fad28bf8fa6b89da172a5cec0ade7c580f9 6364 umis_1.0.8-1_armhf.buildinfo
 07b3fae48cb3da3fa00e1522b63d32e3d96a42c279ffb829711bf4bea60a4e3f 24952 umis_1.0.8-1_armhf.deb
Files:
 0c1fca0d71768e4c0385a1e8061e2398 27116 debug optional umis-dbgsym_1.0.8-1_armhf.deb
 d5328df9db0c7c92081a8ee60696d8dd 6364 science optional umis_1.0.8-1_armhf.buildinfo
 67145312df47d3dce3812b8240304230 24952 science optional umis_1.0.8-1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


umis-dbgsym_1.0.8-1_armhf.deb
-----------------------------

 new Debian package, version 2.0.
 size 27116 bytes: control archive=528 bytes.
     357 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: umis-dbgsym
 Source: umis
 Version: 1.0.8-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 41
 Depends: umis (= 1.0.8-1)
 Section: debug
 Priority: optional
 Description: debug symbols for umis
 Build-Ids: 6e95436cfc519e5626483494a5548cac0fd4bfe7

drwxr-xr-x root/root         0 2021-10-12 07:04 ./
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/lib/
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/lib/debug/
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/lib/debug/.build-id/6e/
-rw-r--r-- root/root     31452 2021-10-12 07:04 ./usr/lib/debug/.build-id/6e/95436cfc519e5626483494a5548cac0fd4bfe7.debug
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/share/
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/share/doc/
lrwxrwxrwx root/root         0 2021-10-12 07:04 ./usr/share/doc/umis-dbgsym -> umis


umis_1.0.8-1_armhf.deb
----------------------

 new Debian package, version 2.0.
 size 24952 bytes: control archive=1592 bytes.
     827 bytes,    21 lines      control              
    1214 bytes,    15 lines      md5sums              
     233 bytes,    12 lines   *  postinst             #!/bin/sh
     382 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: umis
 Version: 1.0.8-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 108
 Depends: libc6 (>= 2.4), python3 (<< 3.10), python3 (>= 3.9~), python3-click, python3-pandas, python3-pysam, python3-regex, python3-scipy, python3-toolz, python3:any
 Suggests: umis-examples
 Section: science
 Priority: optional
 Homepage: https://github.com/vals/umis
 Description: tools for processing UMI RNA-tag data
  Umis provides tools for estimating expression in RNA-Seq data which
  performs sequencing of end tags of transcript, and incorporate molecular
  tags to correct for amplification bias.
  .
  There are four steps in this process.
  .
   1. Formatting reads
   2. Filtering noisy cellular barcodes
   3. Pseudo-mapping to cDNAs
   4. Counting molecular identifiers

drwxr-xr-x root/root         0 2021-10-12 07:04 ./
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/bin/
-rwxr-xr-x root/root       943 2021-10-12 07:04 ./usr/bin/umis
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/lib/
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/lib/python3/
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/lib/python3/dist-packages/umis-1.0.8.egg-info/
-rw-r--r-- root/root      4572 2021-10-12 07:04 ./usr/lib/python3/dist-packages/umis-1.0.8.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2021-10-12 07:04 ./usr/lib/python3/dist-packages/umis-1.0.8.egg-info/dependency_links.txt
-rw-r--r-- root/root        41 2021-10-12 07:04 ./usr/lib/python3/dist-packages/umis-1.0.8.egg-info/entry_points.txt
-rw-r--r-- root/root         0 2021-10-12 07:04 ./usr/lib/python3/dist-packages/umis-1.0.8.egg-info/requires.txt
-rw-r--r-- root/root        11 2021-10-12 07:04 ./usr/lib/python3/dist-packages/umis-1.0.8.egg-info/top_level.txt
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/lib/python3/dist-packages/umis/
-rw-r--r-- root/root        19 2021-09-27 13:53 ./usr/lib/python3/dist-packages/umis/__init__.py
-rw-r--r-- root/root      6652 2021-09-27 13:53 ./usr/lib/python3/dist-packages/umis/barcodes.py
-rw-r--r-- root/root     50915 2021-09-27 13:53 ./usr/lib/python3/dist-packages/umis/umis.py
-rw-r--r-- root/root     17992 2021-10-12 07:04 ./usr/lib/python3/dist-packages/utils.cpython-39-arm-linux-gnueabihf.so
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/share/
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/share/doc/umis/
-rw-r--r-- root/root       326 2021-10-12 07:04 ./usr/share/doc/umis/README.test
-rw-r--r-- root/root       615 2021-10-12 07:04 ./usr/share/doc/umis/changelog.Debian.gz
-rw-r--r-- root/root      1666 2021-09-27 13:53 ./usr/share/doc/umis/changelog.gz
-rw-r--r-- root/root      1325 2021-10-12 07:04 ./usr/share/doc/umis/copyright
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/share/man/
drwxr-xr-x root/root         0 2021-10-12 07:04 ./usr/share/man/man1/
-rw-r--r-- root/root       740 2021-10-12 07:04 ./usr/share/man/man1/umis.1.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 2292
Build-Time: 64
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 551
Job: umis_1.0.8-1
Machine Architecture: armhf
Package: umis
Package-Time: 663
Source-Version: 1.0.8-1
Space: 2292
Status: successful
Version: 1.0.8-1
--------------------------------------------------------------------------------
Finished at 2021-10-14T14:15:47Z
Build needed 00:11:03, 2292k disc space