Raspbian Package Auto-Building

Build log for umis (1.0.7-1) on armhf

umis1.0.7-1armhf → 2020-05-21 05:59:02

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02

+==============================================================================+
| umis 1.0.7-1 (armhf)                         Thu, 21 May 2020 05:53:18 +0000 |
+==============================================================================+

Package: umis
Version: 1.0.7-1
Source Version: 1.0.7-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-7988e9a0-c34c-413e-b393-09475f024501' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.5 MB in 10s (2534 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'umis' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/umis.git
Please use:
git clone https://salsa.debian.org/med-team/umis.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 255 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main umis 1.0.7-1 (dsc) [2064 B]
Get:2 http://172.17.0.1/private bullseye-staging/main umis 1.0.7-1 (tar) [248 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main umis 1.0.7-1 (diff) [4960 B]
Fetched 255 kB in 0s (2029 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/umis-cvltZK/umis-1.0.7' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/umis-cvltZK' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ryvZbY/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ryvZbY/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ryvZbY/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ryvZbY/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ryvZbY/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ryvZbY/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ryvZbY/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ryvZbY/apt_archive ./ Packages [435 B]
Fetched 2111 B in 0s (9641 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 42 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ryvZbY/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (65.5 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12233 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 12), dh-python, cython3, python3-dev, python3-setuptools, python3-pysam
Filtered Build-Depends: debhelper-compat (= 12), dh-python, cython3, python3-dev, python3-setuptools, python3-pysam
dpkg-deb: building package 'sbuild-build-depends-umis-dummy' in '/<<BUILDDIR>>/resolver-ryvZbY/apt_archive/sbuild-build-depends-umis-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-umis-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ryvZbY/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ryvZbY/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ryvZbY/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ryvZbY/apt_archive ./ Sources [528 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ryvZbY/apt_archive ./ Packages [600 B]
Fetched 2461 B in 0s (11.2 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install umis build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1
  libbsd0 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
  libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0
  libgssapi-krb5-2 libhts3 libicu63 libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1
  libpsl5 libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev
  libpython3.8-minimal libpython3.8-stdlib librtmp1 libsigsegv2 libssh2-1
  libssl1.1 libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4
  man-db mime-support po-debconf python3 python3-dev python3-distutils
  python3-lib2to3 python3-minimal python3-pkg-resources python3-pysam
  python3-setuptools python3.8 python3.8-dev python3.8-minimal sensible-utils
  zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
  groff krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk
  m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk
  python3-venv python-setuptools-doc python3.8-venv python3.8-doc
  binfmt-support
Recommended packages:
  curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs krb5-locales publicsuffix libltdl-dev
  libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1
  libbsd0 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
  libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0
  libgssapi-krb5-2 libhts3 libicu63 libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1
  libpsl5 libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev
  libpython3.8-minimal libpython3.8-stdlib librtmp1 libsigsegv2 libssh2-1
  libssl1.1 libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4
  man-db mime-support po-debconf python3 python3-dev python3-distutils
  python3-lib2to3 python3-minimal python3-pkg-resources python3-pysam
  python3-setuptools python3.8 python3.8-dev python3.8-minimal
  sbuild-build-depends-umis-dummy sensible-utils zlib1g-dev
0 upgraded, 74 newly installed, 0 to remove and 42 not upgraded.
Need to get 35.6 MB of archives.
After this operation, 132 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ryvZbY/apt_archive ./ sbuild-build-depends-umis-dummy 0.invalid.0 [888 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1g-1 [1272 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.3-1 [751 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.3-1 [1629 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.3-1 [1600 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.3-1 [416 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-1 [775 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.14-1 [1398 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13 [184 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.8.0-1 [24.2 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.8.0-1 [14.8 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.2-1 [1158 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5 [592 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13 [1002 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.2-2 [78.4 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.2-2 [145 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20200315 [91.6 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6.1 [255 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-7+rpi1 [61.5 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-7+rpi1 [112 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-7+rpi1 [318 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-7+rpi1 [135 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1+b2 [74.2 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1 [53.9 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.68.0-1 [284 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.6-1 [47.4 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.10.2-3 [319 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8 armhf 3.8.3-1 [1365 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-dev armhf 3.8.3-1 [3015 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.8.2-3 [21.0 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf python3.8-dev armhf 3.8.3-1 [519 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.8.2-3 [1164 B]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 46.1.3-1 [183 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf python3-pysam armhf 0.15.4+ds-3 [1589 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 46.1.3-1 [382 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 35.6 MB in 7s (5417 kB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 12233 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.10.0-1_armhf.deb ...
Unpacking libbsd0:armhf (0.10.0-1) ...
Selecting previously unselected package libtinfo5:armhf.
Preparing to unpack .../01-libtinfo5_6.2-1_armhf.deb ...
Unpacking libtinfo5:armhf (6.2-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../02-bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../03-libuchardet0_0.0.6-3_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../04-groff-base_1.22.4-5_armhf.deb ...
Unpacking groff-base (1.22.4-5) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../05-libpipeline1_1.5.2-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.2-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../06-man-db_2.9.1-1_armhf.deb ...
Unpacking man-db (2.9.1-1) ...
Selecting previously unselected package libssl1.1:armhf.
Preparing to unpack .../07-libssl1.1_1.1.1g-1_armhf.deb ...
Unpacking libssl1.1:armhf (1.1.1g-1) ...
Selecting previously unselected package libpython3.8-minimal:armhf.
Preparing to unpack .../08-libpython3.8-minimal_3.8.3-1_armhf.deb ...
Unpacking libpython3.8-minimal:armhf (3.8.3-1) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../09-libexpat1_2.2.9-1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.9-1) ...
Selecting previously unselected package python3.8-minimal.
Preparing to unpack .../10-python3.8-minimal_3.8.3-1_armhf.deb ...
Unpacking python3.8-minimal (3.8.3-1) ...
Setting up libssl1.1:armhf (1.1.1g-1) ...
Setting up libpython3.8-minimal:armhf (3.8.3-1) ...
Setting up libexpat1:armhf (2.2.9-1) ...
Setting up python3.8-minimal (3.8.3-1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 13195 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.8.2-3_armhf.deb ...
Unpacking python3-minimal (3.8.2-3) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../1-mime-support_3.64_all.deb ...
Unpacking mime-support (3.64) ...
Selecting previously unselected package libmpdec2:armhf.
Preparing to unpack .../2-libmpdec2_2.4.2-3_armhf.deb ...
Unpacking libmpdec2:armhf (2.4.2-3) ...
Selecting previously unselected package libpython3.8-stdlib:armhf.
Preparing to unpack .../3-libpython3.8-stdlib_3.8.3-1_armhf.deb ...
Unpacking libpython3.8-stdlib:armhf (3.8.3-1) ...
Selecting previously unselected package python3.8.
Preparing to unpack .../4-python3.8_3.8.3-1_armhf.deb ...
Unpacking python3.8 (3.8.3-1) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../5-libpython3-stdlib_3.8.2-3_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.8.2-3) ...
Setting up python3-minimal (3.8.2-3) ...
Selecting previously unselected package python3.
(Reading database ... 13597 files and directories currently installed.)
Preparing to unpack .../00-python3_3.8.2-3_armhf.deb ...
Unpacking python3 (3.8.2-3) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../01-sensible-utils_0.0.12+nmu1_all.deb ...
Unpacking sensible-utils (0.0.12+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../02-libmagic-mgc_1%3a5.38-5_armhf.deb ...
Unpacking libmagic-mgc (1:5.38-5) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../03-libmagic1_1%3a5.38-5_armhf.deb ...
Unpacking libmagic1:armhf (1:5.38-5) ...
Selecting previously unselected package file.
Preparing to unpack .../04-file_1%3a5.38-5_armhf.deb ...
Unpacking file (1:5.38-5) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../05-gettext-base_0.19.8.1-10_armhf.deb ...
Unpacking gettext-base (0.19.8.1-10) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../06-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../07-m4_1.4.18-4_armhf.deb ...
Unpacking m4 (1.4.18-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../08-autoconf_2.69-11.1_all.deb ...
Unpacking autoconf (2.69-11.1) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../09-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../10-automake_1%3a1.16.2-1_all.deb ...
Unpacking automake (1:1.16.2-1) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../11-autopoint_0.19.8.1-10_all.deb ...
Unpacking autopoint (0.19.8.1-10) ...
Selecting previously unselected package cython3.
Preparing to unpack .../12-cython3_0.29.14-1_armhf.deb ...
Unpacking cython3 (0.29.14-1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../13-libtool_2.4.6-14_all.deb ...
Unpacking libtool (2.4.6-14) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../14-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../15-libdebhelper-perl_13_all.deb ...
Unpacking libdebhelper-perl (13) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../16-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../17-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../18-libfile-stripnondeterminism-perl_1.8.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.8.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../19-dh-strip-nondeterminism_1.8.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.8.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../20-libelf1_0.176-1.1_armhf.deb ...
Unpacking libelf1:armhf (0.176-1.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../21-dwz_0.13-5_armhf.deb ...
Unpacking dwz (0.13-5) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../22-libglib2.0-0_2.64.2-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.64.2-1) ...
Selecting previously unselected package libicu63:armhf.
Preparing to unpack .../23-libicu63_63.2-3_armhf.deb ...
Unpacking libicu63:armhf (63.2-3) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../24-libxml2_2.9.10+dfsg-5_armhf.deb ...
Unpacking libxml2:armhf (2.9.10+dfsg-5) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../25-libcroco3_0.6.13-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.13-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../26-gettext_0.19.8.1-10_armhf.deb ...
Unpacking gettext (0.19.8.1-10) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../27-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../28-po-debconf_1.0.21_all.deb ...
Unpacking po-debconf (1.0.21) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../29-debhelper_13_all.deb ...
Unpacking debhelper (13) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../30-python3-lib2to3_3.8.2-2_all.deb ...
Unpacking python3-lib2to3 (3.8.2-2) ...
Selecting previously unselected package python3-distutils.
Preparing to unpack .../31-python3-distutils_3.8.2-2_all.deb ...
Unpacking python3-distutils (3.8.2-2) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../32-dh-python_4.20200315_all.deb ...
Unpacking dh-python (4.20200315) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../33-libbrotli1_1.0.7-6.1_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.7-6.1) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../34-libkrb5support0_1.17-7+rpi1_armhf.deb ...
Unpacking libkrb5support0:armhf (1.17-7+rpi1) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../35-libk5crypto3_1.17-7+rpi1_armhf.deb ...
Unpacking libk5crypto3:armhf (1.17-7+rpi1) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../36-libkeyutils1_1.6.1-2_armhf.deb ...
Unpacking libkeyutils1:armhf (1.6.1-2) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../37-libkrb5-3_1.17-7+rpi1_armhf.deb ...
Unpacking libkrb5-3:armhf (1.17-7+rpi1) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../38-libgssapi-krb5-2_1.17-7+rpi1_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.17-7+rpi1) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../39-libnghttp2-14_1.40.0-1+b2_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.40.0-1+b2) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../40-libpsl5_0.21.0-1_armhf.deb ...
Unpacking libpsl5:armhf (0.21.0-1) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../41-librtmp1_2.4+20151223.gitfa8646d.1-2+b1_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../42-libssh2-1_1.8.0-2.1_armhf.deb ...
Unpacking libssh2-1:armhf (1.8.0-2.1) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../43-libcurl3-gnutls_7.68.0-1_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.68.0-1) ...
Selecting previously unselected package libdeflate0:armhf.
Preparing to unpack .../44-libdeflate0_1.6-1_armhf.deb ...
Unpacking libdeflate0:armhf (1.6-1) ...
Selecting previously unselected package libexpat1-dev:armhf.
Preparing to unpack .../45-libexpat1-dev_2.2.9-1_armhf.deb ...
Unpacking libexpat1-dev:armhf (2.2.9-1) ...
Selecting previously unselected package libhts3:armhf.
Preparing to unpack .../46-libhts3_1.10.2-3_armhf.deb ...
Unpacking libhts3:armhf (1.10.2-3) ...
Selecting previously unselected package libpython3.8:armhf.
Preparing to unpack .../47-libpython3.8_3.8.3-1_armhf.deb ...
Unpacking libpython3.8:armhf (3.8.3-1) ...
Selecting previously unselected package libpython3.8-dev:armhf.
Preparing to unpack .../48-libpython3.8-dev_3.8.3-1_armhf.deb ...
Unpacking libpython3.8-dev:armhf (3.8.3-1) ...
Selecting previously unselected package libpython3-dev:armhf.
Preparing to unpack .../49-libpython3-dev_3.8.2-3_armhf.deb ...
Unpacking libpython3-dev:armhf (3.8.2-3) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../50-zlib1g-dev_1%3a1.2.11.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Selecting previously unselected package python3.8-dev.
Preparing to unpack .../51-python3.8-dev_3.8.3-1_armhf.deb ...
Unpacking python3.8-dev (3.8.3-1) ...
Selecting previously unselected package python3-dev.
Preparing to unpack .../52-python3-dev_3.8.2-3_armhf.deb ...
Unpacking python3-dev (3.8.2-3) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../53-python3-pkg-resources_46.1.3-1_all.deb ...
Unpacking python3-pkg-resources (46.1.3-1) ...
Selecting previously unselected package python3-pysam.
Preparing to unpack .../54-python3-pysam_0.15.4+ds-3_armhf.deb ...
Unpacking python3-pysam (0.15.4+ds-3) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../55-python3-setuptools_46.1.3-1_all.deb ...
Unpacking python3-setuptools (46.1.3-1) ...
Selecting previously unselected package sbuild-build-depends-umis-dummy.
Preparing to unpack .../56-sbuild-build-depends-umis-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-umis-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.2-2) ...
Setting up libkeyutils1:armhf (1.6.1-2) ...
Setting up libpsl5:armhf (0.21.0-1) ...
Setting up mime-support (3.64) ...
Setting up libmagic-mgc (1:5.38-5) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.64.2-1) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (13) ...
Setting up libbrotli1:armhf (1.0.7-6.1) ...
Setting up libnghttp2-14:armhf (1.40.0-1+b2) ...
Setting up libmagic1:armhf (1:5.38-5) ...
Setting up libdeflate0:armhf (1.6-1) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-5) ...
Setting up libicu63:armhf (63.2-3) ...
Setting up libkrb5support0:armhf (1.17-7+rpi1) ...
Setting up autotools-dev (20180224.1) ...
Setting up libexpat1-dev:armhf (2.2.9-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libk5crypto3:armhf (1.17-7+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up libkrb5-3:armhf (1.17-7+rpi1) ...
Setting up libmpdec2:armhf (2.4.2-3) ...
Setting up libpython3.8-stdlib:armhf (3.8.3-1) ...
Setting up python3.8 (3.8.3-1) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.2-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.10+dfsg-5) ...
Setting up libpython3-stdlib:armhf (3.8.2-3) ...
Setting up libfile-stripnondeterminism-perl (1.8.0-1) ...
Setting up libtool (2.4.6-14) ...
Setting up m4 (1.4.18-4) ...
Setting up python3 (3.8.2-3) ...
Setting up libpython3.8:armhf (3.8.3-1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-7+rpi1) ...
Setting up cython3 (0.29.14-1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.8.0-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up python3-lib2to3 (3.8.2-2) ...
Setting up python3-pkg-resources (46.1.3-1) ...
Setting up automake (1:1.16.2-1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3-distutils (3.8.2-2) ...
Setting up dh-python (4.20200315) ...
Setting up gettext (0.19.8.1-10) ...
Setting up python3-setuptools (46.1.3-1) ...
Setting up libcurl3-gnutls:armhf (7.68.0-1) ...
Setting up man-db (2.9.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libpython3.8-dev:armhf (3.8.3-1) ...
Setting up python3.8-dev (3.8.3-1) ...
Setting up libhts3:armhf (1.10.2-3) ...
Setting up python3-pysam (0.15.4+ds-3) ...
Setting up libpython3-dev:armhf (3.8.2-3) ...
Setting up po-debconf (1.0.21) ...
Setting up python3-dev (3.8.2-3) ...
Setting up debhelper (13) ...
Setting up dh-autoreconf (19) ...
Setting up sbuild-build-depends-umis-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.30-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.34-5+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-11+rpi1 gcc-9_9.3.0-11+rpi1 libc6-dev_2.30-7+rpi1 libstdc++-9-dev_9.3.0-11+rpi1 libstdc++6_10-20200418-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.1.0 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-5+rpi1 binutils-arm-linux-gnueabihf_2.34-5+rpi1 binutils-common_2.34-5+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.35.1-2 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-11+rpi1 cython3_0.29.14-1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20200315 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.1-2 file_1:5.38-5 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-11+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10-20200418-1+rpi1 gcc-9_9.3.0-11+rpi1 gcc-9-base_9.3.0-11+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-8 libapt-pkg6.0_2.1.0 libarchive-zip-perl_1.68-1 libasan5_9.3.0-11+rpi1 libassuan0_2.5.3-7 libatomic1_10-20200418-1+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.34-5+rpi1 libblkid1_2.35.1-2 libbrotli1_1.0.7-6.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-7+rpi1 libc-dev-bin_2.30-7+rpi1 libc6_2.30-7+rpi1 libc6-dev_2.30-7+rpi1 libcap-ng0_0.7.9-2.1+b1 libcap2_1:2.33-1 libcap2-bin_1:2.33-1 libcc1-0_10-20200418-1+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-5+rpi1 libctf0_2.34-5+rpi1 libcurl3-gnutls_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_13 libdeflate0_1.6-1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.1-2 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.0-1 libgcc-9-dev_9.3.0-11+rpi1 libgcc-s1_10-20200418-1+rpi1 libgcc1_1:10-20200418-1+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2 libgomp1_10-20200418-1+rpi1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-7+rpi1 libhogweed5_3.5.1+really3.5.1-2 libhts3_1.10.2-3 libicu63_63.2-3 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libk5crypto3_1.17-7+rpi1 libkeyutils1_1.6.1-2 libkrb5-3_1.17-7+rpi1 libkrb5support0_1.17-7+rpi1 libksba8_1.3.5-2 libldap-2.4-2_2.4.50+dfsg-1 libldap-common_2.4.50+dfsg-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.1-2 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1+b2 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-cap_1:2.33-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2 libpsl5_0.21.0-1 libpython3-dev_3.8.2-3 libpython3-stdlib_3.8.2-3 libpython3.8_3.8.3-1 libpython3.8-dev_3.8.3-1 libpython3.8-minimal_3.8.3-1 libpython3.8-stdlib_3.8.3-1 libreadline7_7.0-5 libreadline8_8.0-4 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.35.1-2 libsqlite3-0_3.31.1-5 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-11+rpi1 libstdc++6_10-20200418-1+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.5-1+rpi1 libtasn1-6_4.16.0-2 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10-20200418-1+rpi1 libuchardet0_0.0.6-3 libudev1_245.5-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.35.1-2 libxml2_2.9.10+dfsg-5 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.35.1-2 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-4 po-debconf_1.0.21 python3_3.8.2-3 python3-dev_3.8.2-3 python3-distutils_3.8.2-2 python3-lib2to3_3.8.2-2 python3-minimal_3.8.2-3 python3-pkg-resources_46.1.3-1 python3-pysam_0.15.4+ds-3 python3-setuptools_46.1.3-1 python3.8_3.8.3-1 python3.8-dev_3.8.3-1 python3.8-minimal_3.8.3-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-umis-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.35.1-2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue May 19 13:05:47 2020 UTC
gpgv:                using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1
gpgv:                issuer "moeller@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./umis_1.0.7-1.dsc
dpkg-source: info: extracting umis in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking umis_1.0.7.orig.tar.gz
dpkg-source: info: unpacking umis_1.0.7-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_bashism.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-7988e9a0-c34c-413e-b393-09475f024501
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package umis
dpkg-buildpackage: info: source version 1.0.7-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:217: python3.8 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_umis/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.8' does not exist -- can't clean it
rm -rf umis.egg-info
rm -f umis/utils.c
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.8 setup.py config 
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_umis/build/umis
copying umis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_umis/build/umis
copying umis/barcodes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_umis/build/umis
copying umis/umis.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_umis/build/umis
running build_ext
cythoning umis/utils.pyx to umis/utils.c
building 'utils' extension
creating build
creating build/temp.linux-armhf-3.8
creating build/temp.linux-armhf-3.8/umis
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c umis/utils.c -o build/temp.linux-armhf-3.8/umis/utils.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.8/umis/utils.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_umis/build/utils.cpython-38-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/umis/utils.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_umis/build; python3.8 -m unittest discover -v 

----------------------------------------------------------------------
Ran 0 tests in 0.000s

OK
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-umis 
running install
running build
running build_py
running build_ext
skipping 'umis/utils.c' Cython extension (up-to-date)
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-umis
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.8
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.8/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.8/dist-packages/umis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_umis/build/umis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.8/dist-packages/umis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_umis/build/umis/barcodes.py -> /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.8/dist-packages/umis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_umis/build/umis/umis.py -> /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.8/dist-packages/umis
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.8/dist-packages/umis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_umis/build/umis/__pycache__/__init__.cpython-38.pyc -> /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.8/dist-packages/umis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_umis/build/utils.cpython-38-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.8/dist-packages
byte-compiling /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.8/dist-packages/umis/__init__.py to __init__.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.8/dist-packages/umis/barcodes.py to barcodes.cpython-38.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.8/dist-packages/umis/umis.py to umis.cpython-38.pyc
running install_egg_info
running egg_info
creating umis.egg-info
writing umis.egg-info/PKG-INFO
writing dependency_links to umis.egg-info/dependency_links.txt
writing entry points to umis.egg-info/entry_points.txt
writing requirements to umis.egg-info/requires.txt
writing top-level names to umis.egg-info/top_level.txt
writing manifest file 'umis.egg-info/SOURCES.txt'
reading manifest file 'umis.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'umis.egg-info/SOURCES.txt'
Copying umis.egg-info to /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.8/dist-packages/umis-1.0.7.egg-info
Skipping SOURCES.txt
running install_scripts
Installing umis script to /<<PKGBUILDDIR>>/debian/python3-umis/usr/bin
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
mkdir -p debian/umis
mv debian/python3-umis/usr debian/umis
rmdir debian/python3-umis
find debian -type d -name __pycache__ | xargs rm -rf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a -O--buildsystem=pybuild
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_installman -a -O--buildsystem=pybuild
   dh_python3 -a -O--buildsystem=pybuild
   dh_installinit -a -O--buildsystem=pybuild
   dh_installsystemduser -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   dh_fixperms -a -O--buildsystem=pybuild
   dh_missing -a -O--buildsystem=pybuild
   dh_dwz -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package umis: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package umis: substitution variable ${python3:Versions} unused, but is defined
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'umis' in '../umis_1.0.7-1_armhf.deb'.
dpkg-deb: building package 'umis-dbgsym' in '../umis-dbgsym_1.0.7-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../umis_1.0.7-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-05-21T05:58:59Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


umis_1.0.7-1_armhf.changes:
---------------------------

Format: 1.8
Date: Tue, 19 May 2020 15:01:34 +0200
Source: umis
Binary: umis umis-dbgsym
Architecture: armhf
Version: 1.0.7-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Steffen Moeller <moeller@debian.org>
Description:
 umis       - tools for processing UMI RNA-tag data
Changes:
 umis (1.0.7-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Add salsa-ci file (routine-update)
   * Rules-Requires-Root: no (routine-update)
Checksums-Sha1:
 3467d977eb5e11f0fdf26ca4de8a0e4ccd9c473a 31640 umis-dbgsym_1.0.7-1_armhf.deb
 1ef35614442464701c49a490dee102f2590ac4b1 6126 umis_1.0.7-1_armhf.buildinfo
 f643ba449845167c289288b79a061ce1135c2676 24864 umis_1.0.7-1_armhf.deb
Checksums-Sha256:
 4e783f686a9dccca1421802a2edf6404c9d2757cbae21c27f7b54ade6b5b3326 31640 umis-dbgsym_1.0.7-1_armhf.deb
 aff88e5deef9866646cc954f1cdc34a0fe6777d69c1025f81f1656eeb981cb86 6126 umis_1.0.7-1_armhf.buildinfo
 ad6e102913b3a3c893fb3069fc316682f2abcfdcde82ccef424243ca012ccbda 24864 umis_1.0.7-1_armhf.deb
Files:
 79a23cd77dcaa31f6621fe5b8001005b 31640 debug optional umis-dbgsym_1.0.7-1_armhf.deb
 4177cef259092635fcbcfef45e2f474c 6126 science optional umis_1.0.7-1_armhf.buildinfo
 e42b7957ce37765b986df92fb0c472a9 24864 science optional umis_1.0.7-1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


umis-dbgsym_1.0.7-1_armhf.deb
-----------------------------

 new Debian package, version 2.0.
 size 31640 bytes: control archive=532 bytes.
     357 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: umis-dbgsym
 Source: umis
 Version: 1.0.7-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 46
 Depends: umis (= 1.0.7-1)
 Section: debug
 Priority: optional
 Description: debug symbols for umis
 Build-Ids: 7acd469ba59ce39940998e963ce38fe9b296ee2d

drwxr-xr-x root/root         0 2020-05-19 13:01 ./
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/lib/
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/lib/debug/.build-id/7a/
-rw-r--r-- root/root     35992 2020-05-19 13:01 ./usr/lib/debug/.build-id/7a/cd469ba59ce39940998e963ce38fe9b296ee2d.debug
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/share/
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-05-19 13:01 ./usr/share/doc/umis-dbgsym -> umis


umis_1.0.7-1_armhf.deb
----------------------

 new Debian package, version 2.0.
 size 24864 bytes: control archive=1592 bytes.
     826 bytes,    21 lines      control              
    1214 bytes,    15 lines      md5sums              
     233 bytes,    12 lines   *  postinst             #!/bin/sh
     382 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: umis
 Version: 1.0.7-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 108
 Depends: libc6 (>= 2.4), python3 (<< 3.9), python3 (>= 3.8~), python3-click, python3-pandas, python3-pysam, python3-regex, python3-scipy, python3-toolz, python3:any
 Suggests: umis-examples
 Section: science
 Priority: optional
 Homepage: https://github.com/vals/umis
 Description: tools for processing UMI RNA-tag data
  Umis provides tools for estimating expression in RNA-Seq data which
  performs sequencing of end tags of transcript, and incorporate molecular
  tags to correct for amplification bias.
  .
  There are four steps in this process.
  .
   1. Formatting reads
   2. Filtering noisy cellular barcodes
   3. Pseudo-mapping to cDNAs
   4. Counting molecular identifiers

drwxr-xr-x root/root         0 2020-05-19 13:01 ./
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/bin/
-rwxr-xr-x root/root       367 2020-05-19 13:01 ./usr/bin/umis
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/lib/
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/lib/python3/
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/lib/python3/dist-packages/umis-1.0.7.egg-info/
-rw-r--r-- root/root      4572 2020-05-19 13:01 ./usr/lib/python3/dist-packages/umis-1.0.7.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2020-05-19 13:01 ./usr/lib/python3/dist-packages/umis-1.0.7.egg-info/dependency_links.txt
-rw-r--r-- root/root        41 2020-05-19 13:01 ./usr/lib/python3/dist-packages/umis-1.0.7.egg-info/entry_points.txt
-rw-r--r-- root/root         0 2020-05-19 13:01 ./usr/lib/python3/dist-packages/umis-1.0.7.egg-info/requires.txt
-rw-r--r-- root/root        11 2020-05-19 13:01 ./usr/lib/python3/dist-packages/umis-1.0.7.egg-info/top_level.txt
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/lib/python3/dist-packages/umis/
-rw-r--r-- root/root        19 2020-03-28 00:50 ./usr/lib/python3/dist-packages/umis/__init__.py
-rw-r--r-- root/root      6652 2020-03-28 00:50 ./usr/lib/python3/dist-packages/umis/barcodes.py
-rw-r--r-- root/root     50393 2020-03-28 00:50 ./usr/lib/python3/dist-packages/umis/umis.py
-rw-r--r-- root/root     17992 2020-05-19 13:01 ./usr/lib/python3/dist-packages/utils.cpython-38-arm-linux-gnueabihf.so
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/share/
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/share/doc/umis/
-rw-r--r-- root/root       326 2020-05-19 13:01 ./usr/share/doc/umis/README.test
-rw-r--r-- root/root       484 2020-05-19 13:01 ./usr/share/doc/umis/changelog.Debian.gz
-rw-r--r-- root/root      1641 2020-03-28 00:50 ./usr/share/doc/umis/changelog.gz
-rw-r--r-- root/root      1325 2020-05-19 13:01 ./usr/share/doc/umis/copyright
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/share/man/
drwxr-xr-x root/root         0 2020-05-19 13:01 ./usr/share/man/man1/
-rw-r--r-- root/root       740 2020-05-19 13:01 ./usr/share/man/man1/umis.1.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 2324
Build-Time: 19
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 300
Job: umis_1.0.7-1
Machine Architecture: armhf
Package: umis
Package-Time: 341
Source-Version: 1.0.7-1
Space: 2324
Status: successful
Version: 1.0.7-1
--------------------------------------------------------------------------------
Finished at 2020-05-21T05:58:59Z
Build needed 00:05:41, 2324k disk space