umis →
1.0.6-2+b1 →
armhf → 2020-02-29 17:12:44
sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on test2019
+==============================================================================+
| umis 1.0.6-2+b1 (armhf) Sat, 29 Feb 2020 17:02:15 +0000 |
+==============================================================================+
Package: umis
Version: 1.0.6-2+b1
Source Version: 1.0.6-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-1e2ae408-ae8a-4f15-9cde-f32c063e5da0' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.3 MB in 14s (1681 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'umis' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/umis.git
Please use:
git clone https://salsa.debian.org/med-team/umis.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 254 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main umis 1.0.6-2 (dsc) [2060 B]
Get:2 http://172.17.0.1/private bullseye-staging/main umis 1.0.6-2 (tar) [247 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main umis 1.0.6-2 (diff) [4772 B]
Fetched 254 kB in 0s (1195 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/umis-KLti0Z/umis-1.0.6' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/umis-KLti0Z' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-famoEa/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-famoEa/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-famoEa/gpg/trustdb.gpg: trustdb created
gpg: key E70254B6505CF8F7: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key E70254B6505CF8F7: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key E70254B6505CF8F7: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-famoEa/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-famoEa/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-famoEa/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-famoEa/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-famoEa/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-famoEa/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (4958 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-famoEa/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-famoEa/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
libpam-cap
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-famoEa/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14074 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-python, cython3, python3-dev, python3-setuptools, python3-pysam
Filtered Build-Depends: debhelper-compat (= 12), dh-python, cython3, python3-dev, python3-setuptools, python3-pysam
dpkg-deb: building package 'sbuild-build-depends-umis-dummy' in '/<<BUILDDIR>>/resolver-famoEa/apt_archive/sbuild-build-depends-umis-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-umis-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-famoEa/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-famoEa/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-famoEa/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-famoEa/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-famoEa/apt_archive ./ Sources [528 B]
Get:5 copy:/<<BUILDDIR>>/resolver-famoEa/apt_archive ./ Packages [601 B]
Fetched 2462 B in 0s (4953 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-famoEa/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-famoEa/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY E70254B6505CF8F7
Reading package lists...
Install umis build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
libpam-cap
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1
libbsd0 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0
libgnutls30 libgssapi-krb5-2 libhts3 libicu63 libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 libmagic-mgc libmagic1 libmpdec2 libnghttp2-14
libpipeline1 libpsl5 libpython3-dev libpython3-stdlib libpython3.7
libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib librtmp1
libsigsegv2 libssh2-1 libssl1.1 libsub-override-perl libtinfo5 libtool
libuchardet0 libxml2 m4 man-db mime-support po-debconf python3 python3-dev
python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
python3-pysam python3-setuptools python3.7 python3.7-dev python3.7-minimal
sensible-utils zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev
groff gnutls-bin krb5-doc krb5-user libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc
python3.7-venv python3.7-doc binfmt-support
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales publicsuffix libltdl-dev
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbrotli1
libbsd0 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0
libgssapi-krb5-2 libhts3 libicu63 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1
libpsl5 libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
libpython3.7-minimal libpython3.7-stdlib librtmp1 libsigsegv2 libssh2-1
libssl1.1 libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4
man-db mime-support po-debconf python3 python3-dev python3-distutils
python3-lib2to3 python3-minimal python3-pkg-resources python3-pysam
python3-setuptools python3.7 python3.7-dev python3.7-minimal
sbuild-build-depends-umis-dummy sensible-utils zlib1g-dev
The following packages will be upgraded:
libgnutls30 zlib1g
2 upgraded, 74 newly installed, 0 to remove and 28 not upgraded.
Need to get 74.3 MB of archives.
After this operation, 190 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-famoEa/apt_archive ./ sbuild-build-depends-umis-dummy 0.invalid.0 [888 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf zlib1g armhf 1:1.2.11.dfsg-1.2 [84.6 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-2 [1261 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.6-1+b1 [585 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.6-1+b1 [1525 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.5-3 [36.8 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.6-1+b1 [1669 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.6-1+b1 [351 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.5-3 [20.2 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.5-3 [62.1 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libgnutls30 armhf 3.6.12-2 [1139 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.14-0.1 [1375 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-13 [513 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.9 [183 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.5-1 [1140 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.9 [994 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.0-1 [78.3 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.0-1 [145 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20191017 [94.4 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6 [261 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1+b2 [74.2 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.68.0-1 [284 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.5-3 [49.0 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.10.2-3 [319 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7 armhf 3.7.6-1+b1 [1256 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-dev armhf 3.7.6-1+b1 [40.2 MB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.7.5-3 [20.3 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1.2 [203 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf python3.7-dev armhf 3.7.6-1+b1 [518 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.7.5-3 [1260 B]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 44.0.0-1 [155 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf python3-pysam armhf 0.15.4+ds-1 [2363 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 44.0.0-1 [313 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking libbsd0:armhf (0.10.0-1) ...
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(Reading database ... 14405 files and directories currently installed.)
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Selecting previously unselected package libssl1.1:armhf.
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Preparing to unpack .../libpython3.7-minimal_3.7.6-1+b1_armhf.deb ...
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Setting up libssl1.1:armhf (1.1.1d-2) ...
Setting up libpython3.7-minimal:armhf (3.7.6-1+b1) ...
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+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ armhf (armv7l)
Toolchain package versions: binutils_2.33.90.20200122-2+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-25+rpi1 gcc-9_9.2.1-25+rpi1 libc6-dev_2.29-9+rpi1 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.90.20200122-2+rpi1 binutils-arm-linux-gnueabihf_2.33.90.20200122-2+rpi1 binutils-common_2.33.90.20200122-2+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-25+rpi1 cython3_0.29.14-0.1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20191017 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.19-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-25+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-25+rpi1 gcc-9-base_9.2.1-25+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.19-1 gnupg-l10n_2.2.19-1 gnupg-utils_2.2.19-1 gpg_2.2.19-1 gpg-agent_2.2.19-1 gpg-wks-client_2.2.19-1 gpg-wks-server_2.2.19-1 gpgconf_2.2.19-1 gpgsm_2.2.19-1 gpgv_2.2.19-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.9-3 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-25+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-25+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.90.20200122-2+rpi1 libblkid1_2.34-0.1 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-9+rpi1 libc-dev-bin_2.29-9+rpi1 libc6_2.29-9+rpi1 libc6-dev_2.29-9+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-25+rpi1 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libctf-nobfd0_2.33.90.20200122-2+rpi1 libctf0_2.33.90.20200122-2+rpi1 libcurl3-gnutls_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.9 libdeflate0_1.5-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.2.1-25+rpi1 libgcc1_1:9.2.1-25+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.5-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.12-2 libgomp1_9.2.1-25+rpi1 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-6+b1 libhogweed5_3.5.1+really3.5.1-2 libhts3_1.10.2-3 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22-2 libk5crypto3_1.17-6+b1 libkeyutils1_1.6.1-2 libkrb5-3_1.17-6+b1 libkrb5support0_1.17-6+b1 libksba8_1.3.5-2 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1+b2 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2+b1 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpsl5_0.20.2-2 libpython3-dev_3.7.5-3 libpython3-stdlib_3.7.5-3 libpython3.7_3.7.6-1+b1 libpython3.7-dev_3.7.6-1+b1 libpython3.7-minimal_3.7.6-1+b1 libpython3.7-stdlib_3.7.6-1+b1 libreadline7_7.0-5 libreadline8_8.0-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.0+really3.30.1+fossil191229-1 libss2_1.45.5-2 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 libsub-override-perl_0.09-2 libsystemd0_244.1-1+rpi1 libtasn1-6_4.15.0-2 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-13 libubsan1_9.2.1-25+rpi1 libuchardet0_0.0.6-3 libudev1_244.1-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.4+dfsg1-8 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8-1 logsave_1.45.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.4.20200120-1 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python3_3.7.5-3 python3-dev_3.7.5-3 python3-distutils_3.8.0-1 python3-lib2to3_3.8.0-1 python3-minimal_3.7.5-3 python3-pkg-resources_44.0.0-1 python3-pysam_0.15.4+ds-1 python3-setuptools_44.0.0-1 python3.7_3.7.6-1+b1 python3.7-dev_3.7.6-1+b1 python3.7-minimal_3.7.6-1+b1 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-umis-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1.2 zlib1g-dev_1:1.2.11.dfsg-1.2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Jan 27 07:08:45 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./umis_1.0.6-2.dsc
dpkg-source: info: extracting umis in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking umis_1.0.6.orig.tar.gz
dpkg-source: info: unpacking umis_1.0.6-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_bashism.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.0.6-2+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=c605eeb4e47242eab5a84ad883abfd9b
JOURNAL_STREAM=8:18382
LANG=en_GB.UTF-8
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=116
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-1e2ae408-ae8a-4f15-9cde-f32c063e5da0
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_ID=c78767
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package umis
dpkg-buildpackage: info: source version 1.0.6-2+b1
dpkg-buildpackage: info: source distribution bullseye-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:217: python3.7 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_umis/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
rm -rf umis.egg-info
rm -f umis/utils.c
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:217: python3.7 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_umis/build/umis
copying umis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_umis/build/umis
copying umis/barcodes.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_umis/build/umis
copying umis/umis.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_umis/build/umis
running build_ext
cythoning umis/utils.pyx to umis/utils.c
building 'utils' extension
creating build
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/umis
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c umis/utils.c -o build/temp.linux-armhf-3.7/umis/utils.o
arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/umis/utils.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_umis/build/utils.cpython-37m-arm-linux-gnueabihf.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/umis/utils.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_umis/build; python3.7 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-umis
running install
running build
running build_py
running build_ext
skipping 'umis/utils.c' Cython extension (up-to-date)
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-umis
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.7
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.7/dist-packages/umis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_umis/build/umis/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.7/dist-packages/umis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_umis/build/umis/barcodes.py -> /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.7/dist-packages/umis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_umis/build/umis/umis.py -> /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.7/dist-packages/umis
creating /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.7/dist-packages/umis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_umis/build/umis/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.7/dist-packages/umis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_umis/build/utils.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.7/dist-packages
byte-compiling /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.7/dist-packages/umis/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.7/dist-packages/umis/barcodes.py to barcodes.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.7/dist-packages/umis/umis.py to umis.cpython-37.pyc
running install_egg_info
running egg_info
creating umis.egg-info
writing umis.egg-info/PKG-INFO
writing dependency_links to umis.egg-info/dependency_links.txt
writing entry points to umis.egg-info/entry_points.txt
writing requirements to umis.egg-info/requires.txt
writing top-level names to umis.egg-info/top_level.txt
writing manifest file 'umis.egg-info/SOURCES.txt'
reading manifest file 'umis.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'umis.egg-info/SOURCES.txt'
Copying umis.egg-info to /<<PKGBUILDDIR>>/debian/python3-umis/usr/lib/python3.7/dist-packages/umis-1.0.6.egg-info
Skipping SOURCES.txt
running install_scripts
Installing umis script to /<<PKGBUILDDIR>>/debian/python3-umis/usr/bin
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
mkdir -p debian/umis
mv debian/python3-umis/usr debian/umis
rmdir debian/python3-umis
find debian -type d -name __pycache__ | xargs rm -rf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installinit -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package umis: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package umis: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'umis' in '../umis_1.0.6-2+b1_armhf.deb'.
dpkg-deb: building package 'umis-dbgsym' in '../umis-dbgsym_1.0.6-2+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian 2019 test autobuilder <root@raspbian.org> >../umis_1.0.6-2+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-02-29T17:12:26Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
umis_1.0.6-2+b1_armhf.changes:
------------------------------
Format: 1.8
Date: Sat, 29 Feb 2020 17:11:49 +0000
Source: umis (1.0.6-2)
Binary: umis umis-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 1.0.6-2+b1
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian 2019 test autobuilder <root@raspbian.org>
Changed-By: Raspbian 2019 test autobuilder <root@raspbian.org>
Description:
umis - tools for processing UMI RNA-tag data
Changes:
umis (1.0.6-2+b1) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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3bf9a47b48d6eb5d16533c7d93837b83f14ef286 6581 umis_1.0.6-2+b1_armhf.buildinfo
400e5e32d35397c112c91858e5dfbd7a637bdf1b 24880 umis_1.0.6-2+b1_armhf.deb
Checksums-Sha256:
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35968bcb28ea051e656f7bced4e7e01da375b68541dbdf6a25c264f59bf9a1de 6581 umis_1.0.6-2+b1_armhf.buildinfo
2445b42cd15a6d52de8d691d0bfe03dfcfd5867f17281b419c1d891b339790c8 24880 umis_1.0.6-2+b1_armhf.deb
Files:
6b2abb076fd2fbccc8175a8549c40f18 30336 debug optional umis-dbgsym_1.0.6-2+b1_armhf.deb
fbf94b33f7b401d2853c9f76a1222e35 6581 science optional umis_1.0.6-2+b1_armhf.buildinfo
394ea7dfe46f06f87d53708cdffeaf13 24880 science optional umis_1.0.6-2+b1_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: umis (1.0.6-2)
Binary: umis umis-examples
Architecture: armhf
Version: 1.0.6-2+b1
Binary-Only-Changes:
umis (1.0.6-2+b1) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
.
-- Raspbian 2019 test autobuilder <root@raspbian.org> Sat, 29 Feb 2020 17:11:49 +0000
Checksums-Md5:
6b2abb076fd2fbccc8175a8549c40f18 30336 umis-dbgsym_1.0.6-2+b1_armhf.deb
394ea7dfe46f06f87d53708cdffeaf13 24880 umis_1.0.6-2+b1_armhf.deb
Checksums-Sha1:
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400e5e32d35397c112c91858e5dfbd7a637bdf1b 24880 umis_1.0.6-2+b1_armhf.deb
Checksums-Sha256:
c4508e346674a7958db305e9acfb4365a25eaf72f4af337d8261019d7e8446f6 30336 umis-dbgsym_1.0.6-2+b1_armhf.deb
2445b42cd15a6d52de8d691d0bfe03dfcfd5867f17281b419c1d891b339790c8 24880 umis_1.0.6-2+b1_armhf.deb
Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sat, 29 Feb 2020 17:12:24 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.69-11.1),
automake (= 1:1.16.1-4),
autopoint (= 0.19.8.1-10),
autotools-dev (= 20180224.1),
base-files (= 11+rpi1),
base-passwd (= 3.5.47),
bash (= 5.0-5),
binutils (= 2.33.90.20200122-2+rpi1),
binutils-arm-linux-gnueabihf (= 2.33.90.20200122-2+rpi1),
binutils-common (= 2.33.90.20200122-2+rpi1),
bsdmainutils (= 11.1.2),
bsdutils (= 1:2.34-0.1),
build-essential (= 12.8),
bzip2 (= 1.0.8-2),
coreutils (= 8.30-3),
cpp (= 4:9.2.1-3.1+rpi1),
cpp-9 (= 9.2.1-25+rpi1),
cython3 (= 0.29.14-0.1),
dash (= 0.5.10.2-6),
debconf (= 1.5.73),
debhelper (= 12.9),
debianutils (= 4.9.1),
dh-autoreconf (= 19),
dh-python (= 4.20191017),
dh-strip-nondeterminism (= 1.6.3-2),
diffutils (= 1:3.7-3),
dpkg (= 1.19.7),
dpkg-dev (= 1.19.7),
dwz (= 0.13-5),
fdisk (= 2.34-0.1),
file (= 1:5.38-4),
findutils (= 4.7.0-1),
g++ (= 4:9.2.1-3.1+rpi1),
g++-9 (= 9.2.1-25+rpi1),
gcc (= 4:9.2.1-3.1+rpi1),
gcc-9 (= 9.2.1-25+rpi1),
gcc-9-base (= 9.2.1-25+rpi1),
gettext (= 0.19.8.1-10),
gettext-base (= 0.19.8.1-10),
grep (= 3.4-1),
groff-base (= 1.22.4-4),
gzip (= 1.9-3),
hostname (= 3.23),
init-system-helpers (= 1.57),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.2.53-5),
libarchive-zip-perl (= 1.67-1),
libasan5 (= 9.2.1-25+rpi1),
libatomic1 (= 9.2.1-25+rpi1),
libattr1 (= 1:2.4.48-5),
libaudit-common (= 1:2.8.5-2),
libaudit1 (= 1:2.8.5-2+b1),
libbinutils (= 2.33.90.20200122-2+rpi1),
libblkid1 (= 2.34-0.1),
libbrotli1 (= 1.0.7-6),
libbsd0 (= 0.10.0-1),
libbz2-1.0 (= 1.0.8-2),
libc-bin (= 2.29-9+rpi1),
libc-dev-bin (= 2.29-9+rpi1),
libc6 (= 2.29-9+rpi1),
libc6-dev (= 2.29-9+rpi1),
libcap-ng0 (= 0.7.9-2.1),
libcc1-0 (= 9.2.1-25+rpi1),
libcom-err2 (= 1.45.5-2),
libcroco3 (= 0.6.13-1),
libcrypt-dev (= 1:4.4.10-10+b5),
libcrypt1 (= 1:4.4.10-10+b5),
libctf-nobfd0 (= 2.33.90.20200122-2+rpi1),
libctf0 (= 2.33.90.20200122-2+rpi1),
libcurl3-gnutls (= 7.68.0-1),
libdb5.3 (= 5.3.28+dfsg1-0.6),
libdebconfclient0 (= 0.250),
libdebhelper-perl (= 12.9),
libdeflate0 (= 1.5-3),
libdpkg-perl (= 1.19.7),
libelf1 (= 0.176-1.1),
libexpat1 (= 2.2.9-1),
libexpat1-dev (= 2.2.9-1),
libfdisk1 (= 2.34-0.1),
libffi7 (= 3.3-3),
libfile-stripnondeterminism-perl (= 1.6.3-2),
libgcc-9-dev (= 9.2.1-25+rpi1),
libgcc1 (= 1:9.2.1-25+rpi1),
libgcrypt20 (= 1.8.5-3),
libgdbm-compat4 (= 1.18.1-5),
libgdbm6 (= 1.18.1-5),
libglib2.0-0 (= 2.62.5-1),
libgmp10 (= 2:6.1.2+dfsg-4),
libgnutls30 (= 3.6.12-2),
libgomp1 (= 9.2.1-25+rpi1),
libgpg-error0 (= 1.36-7),
libgssapi-krb5-2 (= 1.17-6+b1),
libhogweed5 (= 3.5.1+really3.5.1-2),
libhts3 (= 1.10.2-3),
libicu63 (= 63.2-2),
libidn2-0 (= 2.2.0-2),
libisl22 (= 0.22-2),
libk5crypto3 (= 1.17-6+b1),
libkeyutils1 (= 1.6.1-2),
libkrb5-3 (= 1.17-6+b1),
libkrb5support0 (= 1.17-6+b1),
libldap-2.4-2 (= 2.4.48+dfsg-1+b2),
libldap-common (= 2.4.48+dfsg-1),
liblz4-1 (= 1.9.2-2),
liblzma5 (= 5.2.4-1),
libmagic-mgc (= 1:5.38-4),
libmagic1 (= 1:5.38-4),
libmount1 (= 2.34-0.1),
libmpc3 (= 1.1.0-1),
libmpdec2 (= 2.4.2-3),
libmpfr6 (= 4.0.2-1),
libncursesw6 (= 6.1+20191019-1),
libnettle7 (= 3.5.1+really3.5.1-2),
libnghttp2-14 (= 1.40.0-1+b2),
libp11-kit0 (= 0.23.18.1-2+b1),
libpam-modules (= 1.3.1-5),
libpam-modules-bin (= 1.3.1-5),
libpam-runtime (= 1.3.1-5),
libpam0g (= 1.3.1-5),
libpcre2-8-0 (= 10.34-7),
libpcre3 (= 2:8.39-12),
libperl5.30 (= 5.30.0-9),
libpipeline1 (= 1.5.2-2),
libpsl5 (= 0.20.2-2),
libpython3-dev (= 3.7.5-3),
libpython3-stdlib (= 3.7.5-3),
libpython3.7 (= 3.7.6-1+b1),
libpython3.7-dev (= 3.7.6-1+b1),
libpython3.7-minimal (= 3.7.6-1+b1),
libpython3.7-stdlib (= 3.7.6-1+b1),
libreadline8 (= 8.0-3),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b1),
libsasl2-2 (= 2.1.27+dfsg-2),
libsasl2-modules-db (= 2.1.27+dfsg-2),
libseccomp2 (= 2.4.2-2+rpi1),
libselinux1 (= 3.0-1),
libsigsegv2 (= 2.12-2),
libsmartcols1 (= 2.34-0.1),
libsqlite3-0 (= 3.31.0+really3.30.1+fossil191229-1),
libssh2-1 (= 1.8.0-2.1),
libssl1.1 (= 1.1.1d-2),
libstdc++-9-dev (= 9.2.1-25+rpi1),
libstdc++6 (= 9.2.1-25+rpi1),
libsub-override-perl (= 0.09-2),
libsystemd0 (= 244.1-1+rpi1),
libtasn1-6 (= 4.15.0-2),
libtinfo5 (= 6.1+20191019-1),
libtinfo6 (= 6.1+20191019-1),
libtool (= 2.4.6-13),
libubsan1 (= 9.2.1-25+rpi1),
libuchardet0 (= 0.0.6-3),
libudev1 (= 244.1-1+rpi1),
libunistring2 (= 0.9.10-2),
libuuid1 (= 2.34-0.1),
libxml2 (= 2.9.4+dfsg1-8),
linux-libc-dev (= 5.2.17-1+rpi1+b2),
login (= 1:4.8-1),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-4),
make (= 4.2.1-1.2),
man-db (= 2.9.0-2),
mawk (= 1.3.4.20200120-1),
mime-support (= 3.64),
ncurses-base (= 6.1+20191019-1),
ncurses-bin (= 6.1+20191019-1),
patch (= 2.7.6-6),
perl (= 5.30.0-9),
perl-base (= 5.30.0-9),
perl-modules-5.30 (= 5.30.0-9),
po-debconf (= 1.0.21),
python3 (= 3.7.5-3),
python3-dev (= 3.7.5-3),
python3-distutils (= 3.8.0-1),
python3-lib2to3 (= 3.8.0-1),
python3-minimal (= 3.7.5-3),
python3-pkg-resources (= 44.0.0-1),
python3-pysam (= 0.15.4+ds-1),
python3-setuptools (= 44.0.0-1),
python3.7 (= 3.7.6-1+b1),
python3.7-dev (= 3.7.6-1+b1),
python3.7-minimal (= 3.7.6-1+b1),
readline-common (= 8.0-3),
sed (= 4.7-1),
sensible-utils (= 0.0.12+nmu1),
sysvinit-utils (= 2.96-2.1),
tar (= 1.30+dfsg-6),
util-linux (= 2.34-0.1),
xz-utils (= 5.2.4-1),
zlib1g (= 1:1.2.11.dfsg-1.2),
zlib1g-dev (= 1:1.2.11.dfsg-1.2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="POSIX"
SOURCE_DATE_EPOCH="1582996309"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
umis-dbgsym_1.0.6-2+b1_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 30336 bytes: control archive=532 bytes.
373 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: umis-dbgsym
Source: umis (1.0.6-2)
Version: 1.0.6-2+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 44
Depends: umis (= 1.0.6-2+b1)
Section: debug
Priority: optional
Description: debug symbols for umis
Build-Ids: 5568752365250fa9f10226864e8098537a2b2778
drwxr-xr-x root/root 0 2020-02-29 17:11 ./
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/lib/
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/lib/debug/.build-id/55/
-rw-r--r-- root/root 34692 2020-02-29 17:11 ./usr/lib/debug/.build-id/55/68752365250fa9f10226864e8098537a2b2778.debug
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/share/
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-02-29 17:11 ./usr/share/doc/umis-dbgsym -> umis
umis_1.0.6-2+b1_armhf.deb
-------------------------
new Debian package, version 2.0.
size 24880 bytes: control archive=1628 bytes.
852 bytes, 22 lines control
1294 bytes, 16 lines md5sums
234 bytes, 12 lines * postinst #!/bin/sh
383 bytes, 12 lines * prerm #!/bin/sh
Package: umis
Source: umis (1.0.6-2)
Version: 1.0.6-2+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 109
Depends: libc6 (>= 2.4), python3 (<< 3.8), python3 (>= 3.7~), python3-click, python3-pandas, python3-pysam, python3-regex, python3-scipy, python3-toolz, python3:any
Suggests: umis-examples
Section: science
Priority: optional
Homepage: https://github.com/vals/umis
Description: tools for processing UMI RNA-tag data
Umis provides tools for estimating expression in RNA-Seq data which
performs sequencing of end tags of transcript, and incorporate molecular
tags to correct for amplification bias.
.
There are four steps in this process.
.
1. Formatting reads
2. Filtering noisy cellular barcodes
3. Pseudo-mapping to cDNAs
4. Counting molecular identifiers
drwxr-xr-x root/root 0 2020-02-29 17:11 ./
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/bin/
-rwxr-xr-x root/root 367 2020-02-29 17:11 ./usr/bin/umis
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/lib/
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/lib/python3/
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/lib/python3/dist-packages/umis-1.0.6.egg-info/
-rw-r--r-- root/root 4572 2020-02-29 17:11 ./usr/lib/python3/dist-packages/umis-1.0.6.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2020-02-29 17:11 ./usr/lib/python3/dist-packages/umis-1.0.6.egg-info/dependency_links.txt
-rw-r--r-- root/root 41 2020-02-29 17:11 ./usr/lib/python3/dist-packages/umis-1.0.6.egg-info/entry_points.txt
-rw-r--r-- root/root 0 2020-02-29 17:11 ./usr/lib/python3/dist-packages/umis-1.0.6.egg-info/requires.txt
-rw-r--r-- root/root 11 2020-02-29 17:11 ./usr/lib/python3/dist-packages/umis-1.0.6.egg-info/top_level.txt
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/lib/python3/dist-packages/umis/
-rw-r--r-- root/root 19 2019-11-05 22:38 ./usr/lib/python3/dist-packages/umis/__init__.py
-rw-r--r-- root/root 6652 2019-11-05 22:38 ./usr/lib/python3/dist-packages/umis/barcodes.py
-rw-r--r-- root/root 50364 2019-11-05 22:38 ./usr/lib/python3/dist-packages/umis/umis.py
-rw-r--r-- root/root 17992 2020-02-29 17:11 ./usr/lib/python3/dist-packages/utils.cpython-37m-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/share/
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/share/doc/umis/
-rw-r--r-- root/root 326 2020-01-27 07:05 ./usr/share/doc/umis/README.test
-rw-r--r-- root/root 216 2020-02-29 17:11 ./usr/share/doc/umis/changelog.Debian.armhf.gz
-rw-r--r-- root/root 428 2020-02-29 17:11 ./usr/share/doc/umis/changelog.Debian.gz
-rw-r--r-- root/root 1544 2019-11-05 22:38 ./usr/share/doc/umis/changelog.gz
-rw-r--r-- root/root 1325 2020-01-27 07:05 ./usr/share/doc/umis/copyright
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/share/man/
drwxr-xr-x root/root 0 2020-02-29 17:11 ./usr/share/man/man1/
-rw-r--r-- root/root 740 2020-02-29 17:11 ./usr/share/man/man1/umis.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 2292
Build-Time: 34
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 536
Job: umis_1.0.6-2
Machine Architecture: armhf
Package: umis
Package-Time: 611
Source-Version: 1.0.6-2
Space: 2292
Status: successful
Version: 1.0.6-2+b1
--------------------------------------------------------------------------------
Finished at 2020-02-29T17:12:26Z
Build needed 00:10:11, 2292k disk space