trf →
4.09.1-6 →
armhf → 2022-10-04 08:13:09
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| trf 4.09.1-6 (armhf) Tue, 04 Oct 2022 08:07:54 +0000 |
+==============================================================================+
Package: trf
Version: 4.09.1-6
Source Version: 4.09.1-6
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-c48984a0-0028-48ae-b23a-d26375adfc27' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/trf-hwHOYc/resolver-zirrvW' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.3 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.2 MB]
Fetched 27.5 MB in 11s (2423 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'trf' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/trf.git
Please use:
git clone https://salsa.debian.org/med-team/trf.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 292 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main trf 4.09.1-6 (dsc) [2054 B]
Get:2 http://172.17.4.1/private bookworm-staging/main trf 4.09.1-6 (tar) [274 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main trf 4.09.1-6 (diff) [16.1 kB]
Fetched 292 kB in 0s (2271 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/trf-hwHOYc/trf-4.09.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/trf-hwHOYc' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [370 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [452 B]
Fetched 1779 B in 0s (47.0 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1
libpipeline1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db
po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1
libpipeline1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db
po-debconf sbuild-build-depends-main-dummy
0 upgraded, 30 newly installed, 0 to remove and 6 not upgraded.
Need to get 18.2 MB of archives.
After this operation, 70.0 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [872 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1 [137 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-3 [34.3 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-3 [1364 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-9 [171 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-9 [510 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.9.1 [196 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-3 [10.4 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-9 [1220 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.9.1 [1071 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 18.2 MB in 2s (8430 kB/s)
Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 14692 files and directories currently installed.)
Preparing to unpack .../00-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
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Preparing to unpack .../01-groff-base_1.22.4-8_armhf.deb ...
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Preparing to unpack .../02-bsdextrautils_2.38.1-1_armhf.deb ...
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Preparing to unpack .../03-libpipeline1_1.5.6-3_armhf.deb ...
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Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.6-3) ...
Setting up libicu71:armhf (71.1-3) ...
Setting up bsdextrautils (2.38.1-1) ...
Setting up libmagic-mgc (1:5.41-4) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.9.1) ...
Setting up libmagic1:armhf (1:5.41-4) ...
Setting up gettext-base (0.21-9) ...
Setting up m4 (1.4.19-1) ...
Setting up file (1:5.41-4) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.21-9) ...
Setting up autoconf (2.71-2) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-3) ...
Setting up libelf1:armhf (0.187-2+rpi2) ...
Setting up libxml2:armhf (2.9.14+dfsg-1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.0-1) ...
Setting up gettext (0.21-9) ...
Setting up libtool (2.4.7-4) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-8) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.10.2-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.9.1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.35-1+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.39-3+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-3+rpi1 gcc-12_12.2.0-3+rpi1 libc6-dev_2.35-1+rpi1 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-3+rpi1 binutils-arm-linux-gnueabihf_2.39-3+rpi1 binutils-common_2.39-3+rpi1 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-3+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.9.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-3+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-3+rpi1 gcc-12-base_12.2.0-3+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-9 gettext-base_0.21-9 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libasan8_12.2.0-3+rpi1 libassuan0_2.5.5-4 libatomic1_12.2.0-3+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.39-3+rpi1 libblkid1_2.38.1-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.35-1+rpi1 libc-dev-bin_2.35-1+rpi1 libc6_2.35-1+rpi1 libc6-dev_2.35-1+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-3+rpi1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-3+rpi1 libctf0_2.39-3+rpi1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.9.1 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-12-dev_12.2.0-3+rpi1 libgcc-s1_12.2.0-3+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-2 libgdbm6_1.23-2 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.2.0-3+rpi1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libicu71_71.1-3 libidn2-0_2.3.3-1 libisl23_0.25-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 libldap-2.5-0_2.5.13+dfsg-1 liblz4-1_1.9.4-1+rpi1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-1 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-2 libpam-modules-bin_1.5.2-2 libpam-runtime_1.5.2-2 libpam0g_1.5.2-2 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libperl5.32_5.32.1-6 libperl5.34_5.34.0-5 libpipeline1_1.5.6-3 libreadline8_8.2~rc2-2 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsmartcols1_2.38.1-1 libsqlite3-0_3.39.3-1 libss2_1.46.6~rc1-1 libssl1.1_1.1.1o-1 libssl3_3.0.5-2 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 libsub-override-perl_0.09-3 libsystemd0_251.4-3+rpi1 libtasn1-6_4.19.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libubsan1_12.2.0-3+rpi1 libuchardet0_0.0.7-1 libudev1_251.4-3+rpi1 libunistring2_1.0-1 libuuid1_2.38.1-1 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.10.2-3 mawk_1.3.4.20200120-3.1 mount_2.38.1-1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.32_5.32.1-6 perl-modules-5.34_5.34.0-5 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.2~rc2-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tzdata_2022d-1 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: trf
Binary: trf, trf-examples
Architecture: any all
Version: 4.09.1-6
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://tandem.bu.edu/trf/trf.html
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/trf
Vcs-Git: https://salsa.debian.org/med-team/trf.git
Testsuite: autopkgtest
Testsuite-Triggers: bc, html2text
Build-Depends: debhelper-compat (= 13)
Package-List:
trf deb science optional arch=any
trf-examples deb science optional arch=all
Checksums-Sha1:
d9edd62b0b916cc539534fbe22eabffdea8139ac 274103 trf_4.09.1.orig.tar.gz
e498088e451e922e383c5504da1bd637c0170fa4 16056 trf_4.09.1-6.debian.tar.xz
Checksums-Sha256:
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38e74c5ffad47861b2d3d70a4aec273f6904980b3ff856d75e84177a6252aa84 16056 trf_4.09.1-6.debian.tar.xz
Files:
8569300f69776b65e22ad12caa682ab8 274103 trf_4.09.1.orig.tar.gz
1646377eb9c320a6187df65064a0168a 16056 trf_4.09.1-6.debian.tar.xz
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.FzIsO4vk/trustedkeys.kbx': General error
gpgv: Signature made Sun Oct 2 13:33:54 2022 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./trf_4.09.1-6.dsc
dpkg-source: info: extracting trf in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking trf_4.09.1.orig.tar.gz
dpkg-source: info: unpacking trf_4.09.1-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-exit-code.patch
dpkg-source: info: applying typo.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=79d111ecf76d4d72929efb4c6c309344
JOURNAL_STREAM=8:26624
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-c48984a0-0028-48ae-b23a-d26375adfc27
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c52871
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package trf
dpkg-buildpackage: info: source version 4.09.1-6
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking target system type... arm-unknown-linux-gnueabihf
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking for ranlib... ranlib
checking whether ln -s works... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for limits.h... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for size_t... yes
checking for GNU libc compatible malloc... yes
checking for GNU libc compatible realloc... yes
checking for library containing floor... -lm
checking for sqrt... yes
checking for memset... yes
checking for strchr... yes
checking for strerror... yes
checking for strstr... yes
checking for strtol... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating config.h
config.status: executing depfiles commands
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make all-recursive
make[2]: Entering directory '/<<PKGBUILDDIR>>'
Making all in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fno-align-functions -fno-align-loops -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o trf-trf.o `test -f 'trf.c' || echo './'`trf.c
In file included from trfrun.h:89,
from trf.c:30:
tr30dat.h:49:9: note: ‘#pragma message: You forgot to define a platform when compiling. Setting UNIXCONSOLE.’
49 | #pragma message( \
| ^~~~~~~
In file included from trfrun.h:91:
trfclean.h: In function ‘GetList’:
trfclean.h:166:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
166 | fgets( hsequence, 255, fp );
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
trfclean.h:170:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
170 | fgets( hparameters, 255, fp );
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
trfclean.h: In function ‘CleanAlignments’:
trfclean.h:484:13: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
484 | fgets( string2, 260, al_fp );
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
trfclean.h:485:13: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
485 | fgets( string3, 260, al_fp );
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
trfclean.h:502:13: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
502 | fgets( string2, 260, al_fp );
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
trfclean.h: In function ‘BreakAlignments’:
trfclean.h:568:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
568 | fgets( headlns[i], 200, al_fp );
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
trfclean.h:593:13: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
593 | fgets( buffer, 200, al_fp );
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
trfrun.h: In function ‘TRF’:
trfrun.h:696:30: warning: ‘%s’ directive writing up to 259 bytes into a region of size between 0 and 259 [-Wformat-overflow=]
696 | sprintf( htmlstring, "%s.%s.html", paramset.outputprefix, paramstring );
| ^~ ~~~~~~~~~~~
In file included from /usr/include/stdio.h:906,
from trf.c:26:
In function ‘sprintf’,
inlined from ‘TRF’ at trfrun.h:696:5:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 7 and 525 bytes into a destination of size 260
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
trfrun.h: In function ‘TRF’:
trfrun.h:697:29: warning: ‘%s’ directive writing up to 259 bytes into a region of size between 0 and 259 [-Wformat-overflow=]
697 | sprintf( txtstring, "%s.%s.txt.html", paramset.outputprefix, paramstring );
| ^~ ~~~~~~~~~~~
In function ‘sprintf’,
inlined from ‘TRF’ at trfrun.h:697:5:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 11 and 529 bytes into a destination of size 260
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
trfrun.h: In function ‘TRF’:
trfrun.h:698:29: warning: ‘%s’ directive writing up to 259 bytes into a region of size between 0 and 259 [-Wformat-overflow=]
698 | sprintf( datstring, "%s.%s.dat", paramset.outputprefix, paramstring );
| ^~ ~~~~~~~~~~~
In function ‘sprintf’,
inlined from ‘TRF’ at trfrun.h:698:5:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 6 and 524 bytes into a destination of size 260
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
trfrun.h: In function ‘TRF’:
trfrun.h:699:30: warning: ‘%s’ directive writing up to 259 bytes into a region of size between 0 and 259 [-Wformat-overflow=]
699 | sprintf( maskstring, "%s.%s.mask", paramset.outputprefix, paramstring );
| ^~ ~~~~~~~~~~~
In function ‘sprintf’,
inlined from ‘TRF’ at trfrun.h:699:5:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 7 and 525 bytes into a destination of size 260
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
trfrun.h: In function ‘TRFControlRoutine’:
trfrun.h:323:27: warning: ‘.summary.html’ directive writing 13 bytes into a region of size between 0 and 259 [-Wformat-overflow=]
323 | sprintf( desth, "%s.%s.summary.html", prefix, paramstring );
| ^~~~~~~~~~~~~
In function ‘sprintf’,
inlined from ‘TRFControlRoutine’ at trfrun.h:323:5:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 15 or more bytes (assuming 274) into a destination of size 260
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
trfrun.h: In function ‘TRFControlRoutine’:
trfrun.h:335:31: warning: ‘.mask’ directive writing 5 bytes into a region of size between 0 and 259 [-Wformat-overflow=]
335 | sprintf( destm, "%s.%s.mask", prefix, paramstring );
| ^~~~~
In function ‘sprintf’,
inlined from ‘TRFControlRoutine’ at trfrun.h:335:9:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 266) into a destination of size 260
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
trfrun.h: In function ‘TRFControlRoutine’:
trfrun.h:348:35: warning: ‘.dat’ directive writing 4 bytes into a region of size between 0 and 259 [-Wformat-overflow=]
348 | sprintf( destd, "%s.%s.dat", prefix, paramstring );
| ^~~~
In function ‘sprintf’,
inlined from ‘TRFControlRoutine’ at trfrun.h:348:13:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 6 or more bytes (assuming 265) into a destination of size 260
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
trfrun.h: In function ‘TRFControlRoutine’:
trfrun.h:499:32: warning: ‘%s’ directive writing up to 259 bytes into a region of size between 0 and 259 [-Wformat-overflow=]
499 | sprintf( outh, "%s.%s.1.html", input, paramstring );
| ^~ ~~~~~~~~~~~
In function ‘sprintf’,
inlined from ‘TRFControlRoutine’ at trfrun.h:499:13:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 9 and 527 bytes into a destination of size 260
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
trfrun.h: In function ‘TRFControlRoutine’:
trfrun.h:520:42: warning: ‘%s’ directive writing up to 259 bytes into a region of size between 247 and 256 [-Wformat-overflow=]
520 | sprintf( maskstring, "%s.s%d.%s.mask", prefix, i, paramstring );
| ^~ ~~~~~~~~~~~
In function ‘sprintf’,
inlined from ‘TRFControlRoutine’ at trfrun.h:520:13:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 10 or more bytes (assuming 278) into a destination of size 260
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
trfrun.h: In function ‘TRFControlRoutine’:
trfrun.h:528:36: warning: ‘%s’ directive writing up to 259 bytes into a region of size between 247 and 256 [-Wformat-overflow=]
528 | sprintf( outm, "%s.s%d.%s.mask", prefix, i, paramstring );
| ^~ ~~~~~~~~~~~
In function ‘sprintf’,
inlined from ‘TRFControlRoutine’ at trfrun.h:528:13:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 10 or more bytes (assuming 278) into a destination of size 260
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
trfrun.h: In function ‘TRFControlRoutine’:
trfrun.h:196:39: warning: ‘.dat’ directive writing 4 bytes into a region of size between 0 and 259 [-Wformat-overflow=]
196 | sprintf( destd, "%s.%s.dat", prefix, paramstring );
| ^~~~
In function ‘sprintf’,
inlined from ‘TRFControlRoutine’ at trfrun.h:196:17:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 6 or more bytes (assuming 265) into a destination of size 260
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
trfrun.h: In function ‘TRFControlRoutine’:
trfrun.h:288:33: warning: ‘.mask’ directive writing 5 bytes into a region of size between 0 and 259 [-Wformat-overflow=]
288 | maskstring, "%s.%s.mask", paramset.outputprefix, paramstring );
| ^~~~~
In function ‘sprintf’,
inlined from ‘TRFControlRoutine’ at trfrun.h:287:13:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 266) into a destination of size 260
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
gcc -fno-align-functions -fno-align-loops -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o trf trf-trf.o -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Making check in src
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install -a
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Making install in src
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Nothing to be done for 'install-data-am'.
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
/usr/bin/install -c trf '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
make install-exec-hook
make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
ln -s /<<PKGBUILDDIR>>/debian/tmp/usr/bin/trf \
/<<PKGBUILDDIR>>/debian/tmp/usr/bin/trf4.10.0-rc.2.linux.exe
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Nothing to be done for 'install-exec-am'.
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/doc/trf'
/usr/bin/install -c -m 644 README.md '/<<PKGBUILDDIR>>/debian/tmp/usr/share/doc/trf'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
find debian -name "*.exe" -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/trf/usr/bin/trf was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'trf' in '../trf_4.09.1-6_armhf.deb'.
dpkg-deb: building package 'trf-dbgsym' in '../trf-dbgsym_4.09.1-6_armhf.deb'.
dpkg-genbuildinfo --build=any -O../trf_4.09.1-6_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../trf_4.09.1-6_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-10-04T08:13:03Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
trf_4.09.1-6_armhf.changes:
---------------------------
Format: 1.8
Date: Sun, 02 Oct 2022 14:59:22 +0200
Source: trf
Binary: trf trf-dbgsym
Architecture: armhf
Version: 4.09.1-6
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
trf - locate and display tandem repeats in DNA sequences
Changes:
trf (4.09.1-6) unstable; urgency=medium
.
* d/control: add myself to uploaders.
* d/watch: fix watch file; use git mode.
* d/control: declare compliance to standards version 4.6.1.
* typo.patch: added; fix typo caught by lintian.
* d/copyright: bump copyright year for debian/*.
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Files:
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3eb266aa9bf6de9f0a9038ee9abbb02a 4829 science optional trf_4.09.1-6_armhf.buildinfo
6ba873b0dadb61bdcfd84b791dca4ae1 50420 science optional trf_4.09.1-6_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: trf
Binary: trf trf-dbgsym
Architecture: armhf
Version: 4.09.1-6
Checksums-Md5:
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54dff6912d5a362673b442d69efe07bce33836473bb69bc037f1e4dd3b8f4357 50420 trf_4.09.1-6_armhf.deb
Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Tue, 04 Oct 2022 08:13:02 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.71-2),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-9),
autotools-dev (= 20220109.1),
base-files (= 12.2+rpi1),
base-passwd (= 3.6.1),
bash (= 5.2~rc2-2),
binutils (= 2.39-3+rpi1),
binutils-arm-linux-gnueabihf (= 2.39-3+rpi1),
binutils-common (= 2.39-3+rpi1),
bsdextrautils (= 2.38.1-1),
bsdutils (= 1:2.38.1-1),
build-essential (= 12.9),
bzip2 (= 1.0.8-5+b2),
coreutils (= 9.1-1),
cpp (= 4:12.2.0-1+rpi1),
cpp-12 (= 12.2.0-3+rpi1),
dash (= 0.5.11+git20210903+057cd650a4ed-9),
debconf (= 1.5.79),
debhelper (= 13.9.1),
debianutils (= 5.7-0.3),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.13.0-1),
diffutils (= 1:3.8-1),
dpkg (= 1.21.9+rpi1),
dpkg-dev (= 1.21.9+rpi1),
dwz (= 0.14-1),
file (= 1:5.41-4),
findutils (= 4.9.0-3),
g++ (= 4:12.2.0-1+rpi1),
g++-12 (= 12.2.0-3+rpi1),
gcc (= 4:12.2.0-1+rpi1),
gcc-12 (= 12.2.0-3+rpi1),
gcc-12-base (= 12.2.0-3+rpi1),
gettext (= 0.21-9),
gettext-base (= 0.21-9),
grep (= 3.7-1),
groff-base (= 1.22.4-8),
gzip (= 1.12-1),
hostname (= 3.23),
init-system-helpers (= 1.64),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.3.1-1),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 12.2.0-3+rpi1),
libatomic1 (= 12.2.0-3+rpi1),
libattr1 (= 1:2.5.1-1),
libaudit-common (= 1:3.0.7-1.1),
libaudit1 (= 1:3.0.7-1.1),
libbinutils (= 2.39-3+rpi1),
libblkid1 (= 2.38.1-1),
libbz2-1.0 (= 1.0.8-5+b2),
libc-bin (= 2.35-1+rpi1),
libc-dev-bin (= 2.35-1+rpi1),
libc6 (= 2.35-1+rpi1),
libc6-dev (= 2.35-1+rpi1),
libcap-ng0 (= 0.8.3-1),
libcap2 (= 1:2.44-1),
libcc1-0 (= 12.2.0-3+rpi1),
libcom-err2 (= 1.46.6~rc1-1),
libcrypt-dev (= 1:4.4.28-2),
libcrypt1 (= 1:4.4.28-2),
libctf-nobfd0 (= 2.39-3+rpi1),
libctf0 (= 2.39-3+rpi1),
libdb5.3 (= 5.3.28+dfsg1-0.10),
libdebconfclient0 (= 0.264),
libdebhelper-perl (= 13.9.1),
libdpkg-perl (= 1.21.9+rpi1),
libelf1 (= 0.187-2+rpi2),
libfile-stripnondeterminism-perl (= 1.13.0-1),
libgcc-12-dev (= 12.2.0-3+rpi1),
libgcc-s1 (= 12.2.0-3+rpi1),
libgcrypt20 (= 1.10.1-2+b2),
libgdbm-compat4 (= 1.23-2),
libgdbm6 (= 1.23-2),
libgmp10 (= 2:6.2.1+dfsg1-1),
libgomp1 (= 12.2.0-3+rpi1),
libgpg-error0 (= 1.45-2),
libgssapi-krb5-2 (= 1.20-1),
libicu71 (= 71.1-3),
libisl23 (= 0.25-1),
libk5crypto3 (= 1.20-1),
libkeyutils1 (= 1.6.3-1),
libkrb5-3 (= 1.20-1),
libkrb5support0 (= 1.20-1),
liblz4-1 (= 1.9.4-1+rpi1),
liblzma5 (= 5.2.5-2.1),
libmagic-mgc (= 1:5.41-4),
libmagic1 (= 1:5.41-4),
libmount1 (= 2.38.1-1),
libmpc3 (= 1.2.1-2),
libmpfr6 (= 4.1.0-3),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libpam-modules (= 1.5.2-2),
libpam-modules-bin (= 1.5.2-2),
libpam-runtime (= 1.5.2-2),
libpam0g (= 1.5.2-2),
libpcre2-8-0 (= 10.40-1+b2),
libpcre3 (= 2:8.39-14),
libperl5.34 (= 5.34.0-5),
libpipeline1 (= 1.5.6-3),
libseccomp2 (= 2.5.4-1+rpi1),
libselinux1 (= 3.4-1),
libsmartcols1 (= 2.38.1-1),
libssl3 (= 3.0.5-2),
libstdc++-12-dev (= 12.2.0-3+rpi1),
libstdc++6 (= 12.2.0-3+rpi1),
libsub-override-perl (= 0.09-3),
libsystemd0 (= 251.4-3+rpi1),
libtinfo6 (= 6.3+20220423-2),
libtirpc-common (= 1.3.3+ds-1),
libtirpc-dev (= 1.3.3+ds-1),
libtirpc3 (= 1.3.3+ds-1),
libtool (= 2.4.7-4),
libubsan1 (= 12.2.0-3+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 251.4-3+rpi1),
libunistring2 (= 1.0-1),
libuuid1 (= 2.38.1-1),
libxml2 (= 2.9.14+dfsg-1),
libzstd1 (= 1.5.2+dfsg-1),
linux-libc-dev (= 5.19.6-1+rpi1),
login (= 1:4.11.1+dfsg1-2),
m4 (= 1.4.19-1),
make (= 4.3-4.1),
man-db (= 2.10.2-3),
mawk (= 1.3.4.20200120-3.1),
ncurses-base (= 6.3+20220423-2),
ncurses-bin (= 6.3+20220423-2),
patch (= 2.7.6-7),
perl (= 5.34.0-5),
perl-base (= 5.34.0-5),
perl-modules-5.34 (= 5.34.0-5),
po-debconf (= 1.0.21+nmu1),
rpcsvc-proto (= 1.4.2-4),
sed (= 4.8-1),
sensible-utils (= 0.0.17),
sysvinit-utils (= 3.05-6),
tar (= 1.34+dfsg-1),
util-linux (= 2.38.1-1),
util-linux-extra (= 2.38.1-1),
xz-utils (= 5.2.5-2.1),
zlib1g (= 1:1.2.11.dfsg-4.1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1664715562"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
trf-dbgsym_4.09.1-6_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 75268 bytes: control archive=532 bytes.
355 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: trf-dbgsym
Source: trf
Version: 4.09.1-6
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 92
Depends: trf (= 4.09.1-6)
Section: debug
Priority: optional
Description: debug symbols for trf
Build-Ids: aaf7f1aac2cea19d40b5836715bb537fa96f81b2
drwxr-xr-x root/root 0 2022-10-02 12:59 ./
drwxr-xr-x root/root 0 2022-10-02 12:59 ./usr/
drwxr-xr-x root/root 0 2022-10-02 12:59 ./usr/lib/
drwxr-xr-x root/root 0 2022-10-02 12:59 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-10-02 12:59 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-10-02 12:59 ./usr/lib/debug/.build-id/aa/
-rw-r--r-- root/root 83192 2022-10-02 12:59 ./usr/lib/debug/.build-id/aa/f7f1aac2cea19d40b5836715bb537fa96f81b2.debug
drwxr-xr-x root/root 0 2022-10-02 12:59 ./usr/share/
drwxr-xr-x root/root 0 2022-10-02 12:59 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-10-02 12:59 ./usr/share/doc/trf-dbgsym -> trf
trf_4.09.1-6_armhf.deb
----------------------
new Debian package, version 2.0.
size 50420 bytes: control archive=1168 bytes.
1291 bytes, 24 lines control
369 bytes, 6 lines md5sums
Package: trf
Version: 4.09.1-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 182
Depends: libc6 (>= 2.34)
Section: science
Priority: optional
Homepage: https://tandem.bu.edu/trf/trf.html
Description: locate and display tandem repeats in DNA sequences
A tandem repeat in DNA is two or more adjacent, approximate copies of a
pattern of nucleotides. Tandem Repeats Finder is a program to locate and
display tandem repeats in DNA sequences. In order to use the program,
the user submits a sequence in FASTA format. There is no need to specify
the pattern, the size of the pattern or any other parameter. The output
consists of two files: a repeat table file and an alignment file. The
repeat table, viewable in a web browser, contains information about each
repeat, including its location, size, number of copies and nucleotide
content. Clicking on the location indices for one of the table entries
opens a second browser page that shows an alignment of the copies
against a consensus pattern. The program is very fast, analyzing
sequences on the order of .5Mb in just a few seconds. Submitted
sequences may be of arbitrary length. Repeats with pattern size in the
range from 1 to 2000 bases are detected.
drwxr-xr-x root/root 0 2022-10-02 12:59 ./
drwxr-xr-x root/root 0 2022-10-02 12:59 ./usr/
drwxr-xr-x root/root 0 2022-10-02 12:59 ./usr/bin/
-rwxr-xr-x root/root 132828 2022-10-02 12:59 ./usr/bin/trf
drwxr-xr-x root/root 0 2022-10-02 12:59 ./usr/share/
drwxr-xr-x root/root 0 2022-10-02 12:59 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-10-02 12:59 ./usr/share/doc/trf/
-rw-r--r-- root/root 163 2022-10-02 12:59 ./usr/share/doc/trf/README.md
-rw-r--r-- root/root 710 2022-10-02 12:59 ./usr/share/doc/trf/changelog.Debian.gz
-rw-r--r-- root/root 4799 2020-06-20 03:45 ./usr/share/doc/trf/changelog.gz
-rw-r--r-- root/root 35795 2022-10-02 12:59 ./usr/share/doc/trf/copyright
drwxr-xr-x root/root 0 2022-10-02 12:59 ./usr/share/man/
drwxr-xr-x root/root 0 2022-10-02 12:59 ./usr/share/man/man1/
-rw-r--r-- root/root 1006 2022-10-02 12:59 ./usr/share/man/man1/trf.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 22980
Build-Time: 33
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 245
Job: trf_4.09.1-6
Machine Architecture: armhf
Package: trf
Package-Time: 309
Source-Version: 4.09.1-6
Space: 22980
Status: successful
Version: 4.09.1-6
--------------------------------------------------------------------------------
Finished at 2022-10-04T08:13:03Z
Build needed 00:05:09, 22980k disk space