transrate-tools →
1.0.0-5 →
armhf → 2022-11-28 06:18:52
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| transrate-tools 1.0.0-5 (armhf) Mon, 28 Nov 2022 06:07:51 +0000 |
+==============================================================================+
Package: transrate-tools
Version: 1.0.0-5
Source Version: 1.0.0-5
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-60debfb6-0dfa-4fc1-b0fb-ed9437b5e56e' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.4 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.3 MB]
Fetched 27.7 MB in 31s (895 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'transrate-tools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/transrate-tools.git
Please use:
git clone https://salsa.debian.org/med-team/transrate-tools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 273 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main transrate-tools 1.0.0-5 (dsc) [2093 B]
Get:2 http://172.17.4.1/private bookworm-staging/main transrate-tools 1.0.0-5 (tar) [6167 B]
Get:3 http://172.17.4.1/private bookworm-staging/main transrate-tools 1.0.0-5 (diff) [265 kB]
Fetched 273 kB in 0s (1459 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/transrate-tools-XTzOJY/transrate-tools-1.0.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/transrate-tools-XTzOJY' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-YR4J96/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-YR4J96/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-YR4J96/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-YR4J96/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-YR4J96/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-YR4J96/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-YR4J96/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-YR4J96/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2739 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap libperl5.34 netbase perl-modules-5.34 sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 77 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-YR4J96/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (20.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14774 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), cmake, libbamtools-dev, zlib1g-dev, help2man
Filtered Build-Depends: debhelper-compat (= 13), cmake, libbamtools-dev, zlib1g-dev, help2man
dpkg-deb: building package 'sbuild-build-depends-transrate-tools-dummy' in '/<<BUILDDIR>>/resolver-YR4J96/apt_archive/sbuild-build-depends-transrate-tools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-transrate-tools-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-YR4J96/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-YR4J96/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-YR4J96/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-YR4J96/apt_archive ./ Sources [522 B]
Get:5 copy:/<<BUILDDIR>>/resolver-YR4J96/apt_archive ./ Packages [600 B]
Fetched 2455 B in 1s (3237 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install transrate-tools build dependencies (apt-based resolver)
---------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap libperl5.34 netbase perl-modules-5.34
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils bsdutils cmake
cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libarchive13 libbamtools-dev libbamtools2.5.2 libblkid1 libbrotli1 libcurl4
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libicu72 libjsoncpp25 liblocale-gettext-perl libmagic-mgc libmagic1
libmount1 libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5
librhash0 librtmp1 libsmartcols1 libssh2-1 libsub-override-perl libtool
libuchardet0 libuuid1 libuv1 libxml2 m4 man-db mount po-debconf procps
util-linux util-linux-extra zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format
elpa-cmake-mode ninja-build dh-make gettext-doc libasprintf-dev
libgettextpo-dev groff lrzip libbamtools-doc cryptsetup-bin libtool-doc
gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
nfs-common libmail-box-perl dosfstools kbd util-linux-locales
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libgpm2 publicsuffix
libltdl-dev uuid-runtime libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libarchive13 libbamtools-dev libbamtools2.5.2 libbrotli1 libcurl4
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libicu72 libjsoncpp25 liblocale-gettext-perl libmagic-mgc libmagic1
libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5 librhash0 librtmp1
libssh2-1 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db
po-debconf procps sbuild-build-depends-transrate-tools-dummy zlib1g-dev
The following packages will be upgraded:
bsdutils libblkid1 libmount1 libsmartcols1 libuuid1 mount util-linux
util-linux-extra
8 upgraded, 51 newly installed, 0 to remove and 69 not upgraded.
Need to get 28.5 MB of archives.
After this operation, 114 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-YR4J96/apt_archive ./ sbuild-build-depends-transrate-tools-dummy 0.invalid.0 [888 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdutils armhf 1:2.38.1-3 [83.8 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38.1-3 [91.0 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf util-linux-extra armhf 2.38.1-3 [97.9 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf util-linux armhf 2.38.1-3 [1062 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf liblocale-gettext-perl armhf 1.07-4+b3 [14.6 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf mount armhf 2.38.1-3 [125 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libblkid1 armhf 2.38.1-3 [130 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libmount1 armhf 2.38.1-3 [143 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libuuid1 armhf 2.38.1-3 [27.1 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-3 [78.7 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.1-1 [1341 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libprocps8 armhf 2:3.3.17-7.1 [41.9 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf procps armhf 2:3.3.17-7.1 [457 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-2 [9008 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [570 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libarchive13 armhf 3.6.0-1 [306 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.50.0-1 [65.0 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.86.0-2 [322 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libjsoncpp25 armhf 1.9.5-4 [66.7 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf librhash0 armhf 1.4.3-3 [142 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libuv1 armhf 1.44.2-1+rpi1 [125 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf cmake-data all 3.25.0-3 [2026 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf cmake armhf 3.25.0-3 [3868 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.1 [80.8 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.1 [941 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf help2man armhf 1.49.2 [202 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libbamtools2.5.2 armhf 2.5.2+dfsg-2 [127 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libbamtools-dev armhf 2.5.2+dfsg-2 [183 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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Processing triggers for libc-bin (2.35-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-3+rpi1 gcc-12_12.2.0-3+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 bsdextrautils_2.38.1-3 bsdutils_1:2.38.1-3 build-essential_12.9 bzip2_1.0.8-5+b2 cmake_3.25.0-3 cmake-data_3.25.0-3 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-3+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.11.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-3+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-3+rpi1 gcc-12-base_12.2.0-3+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-10 gettext-base_0.21-10 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 grep_3.7-1 groff-base_1.22.4-9 gzip_1.12-1 help2man_1.49.2 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libapt-pkg6.0_2.5.3 libarchive-zip-perl_1.68-1 libarchive13_3.6.0-1 libasan8_12.2.0-3+rpi1 libassuan0_2.5.5-4 libatomic1_12.2.0-3+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbamtools-dev_2.5.2+dfsg-2 libbamtools2.5.2_2.5.2+dfsg-2 libbinutils_2.39-6+rpi1 libblkid1_2.38.1-3 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-5+b2 libc-bin_2.35-2+rpi1 libc-dev-bin_2.35-2+rpi1 libc6_2.35-2+rpi1 libc6-dev_2.35-2+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-3+rpi1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-6+rpi1 libctf0_2.39-6+rpi1 libcurl4_7.86.0-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.11.1 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-12-dev_12.2.0-3+rpi1 libgcc-s1_12.2.0-3+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-2 libgomp1_12.2.0-3+rpi1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libicu72_72.1-2 libidn2-0_2.3.3-1 libisl23_0.25-1 libjsoncpp25_1.9.5-4 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 libldap-2.5-0_2.5.13+dfsg-2+rpi1 liblocale-gettext-perl_1.07-4+b3 liblz4-1_1.9.4-1+rpi1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-3 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libperl5.36_5.36.0-4 libpipeline1_1.5.7-1 libprocps8_2:3.3.17-7.1 libpsl5_0.21.0-1.2 libreadline8_8.2-1 librhash0_1.4.3-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsmartcols1_2.38.1-3 libsqlite3-0_3.39.4-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.5-4 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 libsub-override-perl_0.09-4 libsystemd0_251.5-1+rpi1 libtasn1-6_4.19.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libubsan1_12.2.0-3+rpi1 libuchardet0_0.0.7-1 libudev1_251.5-1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-3 libuv1_1.44.2-1+rpi1 libxml2_2.9.14+dfsg-1.1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.12.3+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-3 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 procps_2:3.3.17-7.1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-transrate-tools-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tzdata_2022d-1 util-linux_2.38.1-3 util-linux-extra_2.38.1-3 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.ADNqLppa/trustedkeys.kbx': General error
gpgv: Signature made Fri Nov 25 21:08:23 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./transrate-tools_1.0.0-5.dsc
dpkg-source: info: extracting transrate-tools in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking transrate-tools_1.0.0.orig.tar.gz
dpkg-source: info: unpacking transrate-tools_1.0.0-5.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying cmake-bamtools
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-60debfb6-0dfa-4fc1-b0fb-ed9437b5e56e
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package transrate-tools
dpkg-buildpackage: info: source version 1.0.0-5
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- The C compiler identification is GNU 12.2.0
-- The CXX compiler identification is GNU 12.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found bamtools: /usr/lib/arm-linux-gnueabihf/libbamtools.so
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bam-read.dir/build.make src/CMakeFiles/bam-read.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/bam-read.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/bam-read.dir/build.make src/CMakeFiles/bam-read.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 75%] Building CXX object src/CMakeFiles/bam-read.dir/pileup.cpp.o
[ 75%] Building CXX object src/CMakeFiles/bam-read.dir/segmenter.cpp.o
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/bamtools -fPIC -O3 -DHAVE_ANSI_TERM -DHAVE_SSTREAM -DHAVE_CONFIG_H -Wall -std=c++11 -MD -MT src/CMakeFiles/bam-read.dir/bam-read.cpp.o -MF CMakeFiles/bam-read.dir/bam-read.cpp.o.d -o CMakeFiles/bam-read.dir/bam-read.cpp.o -c /<<PKGBUILDDIR>>/src/bam-read.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/bamtools -fPIC -O3 -DHAVE_ANSI_TERM -DHAVE_SSTREAM -DHAVE_CONFIG_H -Wall -std=c++11 -MD -MT src/CMakeFiles/bam-read.dir/pileup.cpp.o -MF CMakeFiles/bam-read.dir/pileup.cpp.o.d -o CMakeFiles/bam-read.dir/pileup.cpp.o -c /<<PKGBUILDDIR>>/src/pileup.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/bamtools -fPIC -O3 -DHAVE_ANSI_TERM -DHAVE_SSTREAM -DHAVE_CONFIG_H -Wall -std=c++11 -MD -MT src/CMakeFiles/bam-read.dir/segmenter.cpp.o -MF CMakeFiles/bam-read.dir/segmenter.cpp.o.d -o CMakeFiles/bam-read.dir/segmenter.cpp.o -c /<<PKGBUILDDIR>>/src/segmenter.cpp
/<<PKGBUILDDIR>>/src/segmenter.cpp: In member function 'void Segmenter::load_states()':
/<<PKGBUILDDIR>>/src/segmenter.cpp:26:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
26 | for (int i = 0 ; i < seq.size() ; ++i) {
| ~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/src/segmenter.h:2,
from /<<PKGBUILDDIR>>/src/segmenter.cpp:3:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
523 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void Segmenter::load_states()' at /<<PKGBUILDDIR>>/src/segmenter.cpp:33:14:
/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1032 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam-read.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O3 -DHAVE_ANSI_TERM -DHAVE_SSTREAM -DHAVE_CONFIG_H -Wall -std=c++11 -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/bam-read.dir/bam-read.cpp.o" "CMakeFiles/bam-read.dir/pileup.cpp.o" "CMakeFiles/bam-read.dir/segmenter.cpp.o" -o bam-read -lbamtools
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
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make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Running tests...
/usr/bin/ctest --force-new-ctest-process --verbose -j4
UpdateCTestConfiguration from :/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/DartConfiguration.tcl
UpdateCTestConfiguration from :/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/DartConfiguration.tcl
Test project /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
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Checking test dependency graph...
Checking test dependency graph end
No tests were found!!!
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make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install
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obj*/src/bam-read > debian/bam-read.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
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dh_perl -a
dh_link -a
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dh_installdeb -a
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dpkg-deb: building package 'transrate-tools' in '../transrate-tools_1.0.0-5_armhf.deb'.
dpkg-deb: building package 'transrate-tools-dbgsym' in '../transrate-tools-dbgsym_1.0.0-5_armhf.deb'.
dpkg-genbuildinfo --build=any -O../transrate-tools_1.0.0-5_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../transrate-tools_1.0.0-5_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-11-28T06:18:29Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
transrate-tools_1.0.0-5_armhf.changes:
--------------------------------------
Format: 1.8
Date: Fri, 25 Nov 2022 21:57:59 +0100
Source: transrate-tools
Binary: transrate-tools transrate-tools-dbgsym
Architecture: armhf
Version: 1.0.0-5
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
transrate-tools - helper for transrate
Changes:
transrate-tools (1.0.0-5) unstable; urgency=medium
.
* Team upload.
* Fix watch file
* Standards-Version: 4.6.1 (routine-update)
Checksums-Sha1:
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7c8d0daefae9a253bc0a8aabc546d68e74505c6c 277652 transrate-tools_1.0.0-5_armhf.deb
Checksums-Sha256:
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Files:
79ec147aaf27159bc90cdd1e760ec89e 4668 debug optional transrate-tools-dbgsym_1.0.0-5_armhf.deb
2dc6b15345795f9ecf8577e74cf958a1 5902 science optional transrate-tools_1.0.0-5_armhf.buildinfo
a8a3c6f322ed6560b68a232f66e50077 277652 science optional transrate-tools_1.0.0-5_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
transrate-tools-dbgsym_1.0.0-5_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 4668 bytes: control archive=540 bytes.
401 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: transrate-tools-dbgsym
Source: transrate-tools
Version: 1.0.0-5
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 23
Depends: transrate-tools (= 1.0.0-5)
Section: debug
Priority: optional
Description: debug symbols for transrate-tools
Build-Ids: d71ac6a1d1d8be610cc2806df7884c3048e281af
drwxr-xr-x root/root 0 2022-11-25 20:57 ./
drwxr-xr-x root/root 0 2022-11-25 20:57 ./usr/
drwxr-xr-x root/root 0 2022-11-25 20:57 ./usr/lib/
drwxr-xr-x root/root 0 2022-11-25 20:57 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-11-25 20:57 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-11-25 20:57 ./usr/lib/debug/.build-id/d7/
-rw-r--r-- root/root 12912 2022-11-25 20:57 ./usr/lib/debug/.build-id/d7/1ac6a1d1d8be610cc2806df7884c3048e281af.debug
drwxr-xr-x root/root 0 2022-11-25 20:57 ./usr/share/
drwxr-xr-x root/root 0 2022-11-25 20:57 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-11-25 20:57 ./usr/share/doc/transrate-tools-dbgsym -> transrate-tools
transrate-tools_1.0.0-5_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 277652 bytes: control archive=1008 bytes.
573 bytes, 15 lines control
1031 bytes, 13 lines md5sums
Package: transrate-tools
Version: 1.0.0-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 339
Depends: libbamtools2.5.2 (>= 2.5.2+dfsg), libc6 (>= 2.34), libgcc-s1 (>= 3.5), libstdc++6 (>= 11)
Section: science
Priority: optional
Homepage: https://hibberdlab.com/transrate/
Description: helper for transrate
Transrate is a library and command-line tool for quality assessment of de-novo
transcriptome assemblies.
.
This package provides command line tools used by transrate to process BAM
files.
drwxr-xr-x root/root 0 2022-11-25 20:57 ./
drwxr-xr-x root/root 0 2022-11-25 20:57 ./usr/
drwxr-xr-x root/root 0 2022-11-25 20:57 ./usr/bin/
-rwxr-xr-x root/root 67036 2022-11-25 20:57 ./usr/bin/bam-read
drwxr-xr-x root/root 0 2022-11-25 20:57 ./usr/share/
drwxr-xr-x root/root 0 2022-11-25 20:57 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-11-25 20:57 ./usr/share/doc/transrate-tools/
-rw-r--r-- root/root 1420 2015-09-19 00:34 ./usr/share/doc/transrate-tools/README.md
-rw-r--r-- root/root 278 2022-11-25 20:57 ./usr/share/doc/transrate-tools/README.test
-rw-r--r-- root/root 1005 2022-11-25 20:57 ./usr/share/doc/transrate-tools/README.test-data
-rw-r--r-- root/root 609 2022-11-25 20:57 ./usr/share/doc/transrate-tools/changelog.Debian.gz
-rw-r--r-- root/root 1379 2022-11-25 20:57 ./usr/share/doc/transrate-tools/copyright
drwxr-xr-x root/root 0 2022-11-25 20:57 ./usr/share/doc/transrate-tools/examples/
-rw-r--r-- root/root 1005 2022-11-25 20:57 ./usr/share/doc/transrate-tools/examples/README.test-data
-rw-r--r-- root/root 91318 2022-11-25 20:57 ./usr/share/doc/transrate-tools/examples/SRR11728627.bam
-rw-r--r-- root/root 55245 2022-11-25 20:57 ./usr/share/doc/transrate-tools/examples/SRR11728641.bam
-rw-r--r-- root/root 54776 2022-11-25 20:57 ./usr/share/doc/transrate-tools/examples/SRR11828387.bam
-rw-r--r-- root/root 56214 2022-11-25 20:57 ./usr/share/doc/transrate-tools/examples/SRR11828399.bam
-rw-r--r-- root/root 1012 2022-11-25 20:57 ./usr/share/doc/transrate-tools/run-unit-test
drwxr-xr-x root/root 0 2022-11-25 20:57 ./usr/share/man/
drwxr-xr-x root/root 0 2022-11-25 20:57 ./usr/share/man/man1/
-rw-r--r-- root/root 441 2022-11-25 20:57 ./usr/share/man/man1/bam-read.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 1612
Build-Time: 61
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 510
Job: transrate-tools_1.0.0-5
Machine Architecture: armhf
Package: transrate-tools
Package-Time: 638
Source-Version: 1.0.0-5
Space: 1612
Status: successful
Version: 1.0.0-5
--------------------------------------------------------------------------------
Finished at 2022-11-28T06:18:29Z
Build needed 00:10:38, 1612k disc space