tombo →
1.5.1-4+b1 →
armhf → 2023-02-03 20:04:16
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| tombo 1.5.1-4+b1 (armhf) Fri, 03 Feb 2023 19:50:52 +0000 |
+==============================================================================+
Package: tombo
Version: 1.5.1-4+b1
Source Version: 1.5.1-4
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-a9f13c53-f8d1-41ee-8567-71fa6cc6ab29' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.7 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.4 MB]
Fetched 28.1 MB in 12s (2295 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'tombo' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/tombo.git
Please use:
git clone https://salsa.debian.org/med-team/tombo.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 22.3 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main tombo 1.5.1-4 (dsc) [2292 B]
Get:2 http://172.17.4.1/private bookworm-staging/main tombo 1.5.1-4 (tar) [22.3 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main tombo 1.5.1-4 (diff) [6468 B]
Fetched 22.3 MB in 3s (7067 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/tombo-IoqdOa/tombo-1.5.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/tombo-IoqdOa' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-GjDCoG/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-GjDCoG/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-GjDCoG/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-GjDCoG/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-GjDCoG/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-GjDCoG/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-GjDCoG/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-GjDCoG/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (3030 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 90 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-GjDCoG/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (56.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12958 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, cython3, sphinx-doc, python3-sphinx, python3-sphinx-rtd-theme, python3-sphinx-argparse, libjs-mathjax, python3-h5py, python3-mappy, python3-numpy, python3-scipy, python3-tqdm, python3-nose2
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, cython3, sphinx-doc, python3-sphinx, python3-sphinx-rtd-theme, python3-sphinx-argparse, libjs-mathjax, python3-h5py, python3-mappy, python3-numpy, python3-scipy, python3-tqdm, python3-nose2
dpkg-deb: building package 'sbuild-build-depends-tombo-dummy' in '/<<BUILDDIR>>/resolver-GjDCoG/apt_archive/sbuild-build-depends-tombo-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-tombo-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-GjDCoG/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-GjDCoG/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-GjDCoG/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-GjDCoG/apt_archive ./ Sources [597 B]
Get:5 copy:/<<BUILDDIR>>/resolver-GjDCoG/apt_archive ./ Packages [666 B]
Fetched 2596 B in 1s (5108 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install tombo build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev binutils
binutils-arm-linux-gnueabihf binutils-common bsdextrautils ca-certificates
cpp-12 cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism
docutils-common docutils-doc dwz file fonts-font-awesome fonts-lato
fonts-mathjax g++-12 gcc-12 gcc-12-base gettext gettext-base groff-base
intltool-debian libaec0 libarchive-zip-perl libasan8 libatomic1 libbinutils
libblas3 libbrotli1 libcc1-0 libctf-nobfd0 libctf0 libcurl4
libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgcc-12-dev libgcc-s1 libgfortran5
libgomp1 libhdf5-103-1 libhdf5-hl-100 libicu72 libjs-jquery libjs-mathjax
libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0 liblzf1
libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10-minimal
libpython3.10-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal
libpython3.11-stdlib librtmp1 libssh2-1 libssl3 libstdc++-12-dev libstdc++6
libsub-override-perl libsz2 libtool libubsan1 libuchardet0 libxml2 m4 man-db
media-types openssl po-debconf python-babel-localedata python-requests-doc
python3 python3-alabaster python3-all python3-all-dev python3-babel
python3-certifi python3-chardet python3-charset-normalizer python3-decorator
python3-dev python3-distutils python3-doc python3-docutils python3-h5py
python3-h5py-serial python3-idna python3-imagesize python3-jinja2
python3-lib2to3 python3-mappy python3-markupsafe python3-minimal
python3-nose2 python3-numpy python3-packaging python3-pkg-resources
python3-pygments python3-requests python3-roman python3-scipy
python3-setuptools python3-six python3-snowballstemmer python3-sphinx
python3-sphinx-argparse python3-sphinx-rtd-theme python3-tqdm python3-tz
python3-urllib3 python3.10 python3.10-minimal python3.11 python3.11-dev
python3.11-doc python3.11-minimal sphinx-common sphinx-doc
sphinx-rtd-theme-common xml-core zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales
cpp-12-doc cython-doc dh-make flit python3-build python3-tomli
python3-installer gcc-12-doc gettext-doc libasprintf-dev libgettextpo-dev
groff fonts-mathjax-extras fonts-stix libjs-mathjax-doc libstdc++-12-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-tk python3-venv python3-examples
fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
texlive-latex-base texlive-latex-recommended python-h5py-doc
python-jinja2-doc python-nose2-doc gfortran python3-pytest
python-pygments-doc ttf-bitstream-vera python3-cryptography python3-openssl
python3-socks python-scipy-doc python-setuptools-doc python3-stemmer dvipng
fonts-freefont-otf imagemagick-6.q16 latexmk tex-gyre
texlive-fonts-recommended texlive-latex-extra texlive-plain-generic
python3-brotli python3.10-venv python3.10-doc binfmt-support python3.11-venv
Recommended packages:
curl | wget | lynx libarchive-cpio-perl javascript-common libjson-xs-perl
publicsuffix libltdl-dev libmail-sendmail-perl libpaper-utils python3-pil
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism
docutils-common docutils-doc dwz file fonts-font-awesome fonts-lato
fonts-mathjax gettext gettext-base groff-base intltool-debian libaec0
libarchive-zip-perl libblas3 libbrotli1 libcurl4 libdebhelper-perl libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5
libhdf5-103-1 libhdf5-hl-100 libicu72 libjs-jquery libjs-mathjax
libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0 liblzf1
libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10-minimal
libpython3.10-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal
libpython3.11-stdlib librtmp1 libssh2-1 libsub-override-perl libsz2 libtool
libuchardet0 libxml2 m4 man-db media-types openssl po-debconf
python-babel-localedata python-requests-doc python3 python3-alabaster
python3-all python3-all-dev python3-babel python3-certifi python3-chardet
python3-charset-normalizer python3-decorator python3-dev python3-distutils
python3-doc python3-docutils python3-h5py python3-h5py-serial python3-idna
python3-imagesize python3-jinja2 python3-lib2to3 python3-mappy
python3-markupsafe python3-minimal python3-nose2 python3-numpy
python3-packaging python3-pkg-resources python3-pygments python3-requests
python3-roman python3-scipy python3-setuptools python3-six
python3-snowballstemmer python3-sphinx python3-sphinx-argparse
python3-sphinx-rtd-theme python3-tqdm python3-tz python3-urllib3 python3.10
python3.10-minimal python3.11 python3.11-dev python3.11-doc
python3.11-minimal sbuild-build-depends-tombo-dummy sphinx-common sphinx-doc
sphinx-rtd-theme-common xml-core zlib1g-dev
The following packages will be upgraded:
binutils binutils-arm-linux-gnueabihf binutils-common cpp-12 g++-12 gcc-12
gcc-12-base libasan8 libatomic1 libbinutils libcc1-0 libctf-nobfd0 libctf0
libgcc-12-dev libgcc-s1 libgomp1 libssl3 libstdc++-12-dev libstdc++6
libubsan1
20 upgraded, 124 newly installed, 0 to remove and 70 not upgraded.
Need to get 142 MB of archives.
After this operation, 473 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-GjDCoG/apt_archive ./ sbuild-build-depends-tombo-dummy 0.invalid.0 [956 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf fonts-lato all 2.0-2.1 [2696 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 12.2.0-14+rpi1 [861 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12.2.0-14+rpi1 [37.7 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12.2.0-14+rpi1 [504 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 12.2.0-14+rpi1 [95.4 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 12.2.0-14+rpi1 [8240 B]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libasan8 armhf 12.2.0-14+rpi1 [2088 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf cpp-12 armhf 12.2.0-14+rpi1 [7159 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 12.2.0-14+rpi1 [32.2 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libctf0 armhf 2.39.90.20221231-1+rpi1 [71.5 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libctf-nobfd0 armhf 2.39.90.20221231-1+rpi1 [133 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf binutils-arm-linux-gnueabihf armhf 2.39.90.20221231-1+rpi1 [2069 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libbinutils armhf 2.39.90.20221231-1+rpi1 [407 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf binutils-common armhf 2.39.90.20221231-1+rpi1 [2354 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf binutils armhf 2.39.90.20221231-1+rpi1 [64.9 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf g++-12 armhf 12.2.0-14+rpi1 [7914 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf gcc-12 armhf 12.2.0-14+rpi1 [14.2 MB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libgcc-12-dev armhf 12.2.0-14+rpi1 [727 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-12-dev armhf 12.2.0-14+rpi1 [2027 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 12.2.0-14+rpi1 [36.3 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libssl3 armhf 3.0.7-2 [1614 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-minimal armhf 3.11.1-2 [796 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf python3.11-minimal armhf 3.11.1-2 [1678 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.11.1-2 [25.7 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-stdlib armhf 3.11.1-2 [1622 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf python3.11 armhf 3.11.1-2 [567 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.11.1-2 [8704 B]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.11.1-2 [25.4 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.9-1 [769 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.9-1 [1477 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.2-1 [1342 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.7-2 [1349 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.44-3 [95.3 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.44-3 [41.5 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-2 [256 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.32-2+b1 [1507 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.4 [81.2 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1+b1 [571 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.4 [942 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.10.8-1 [77.3 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.10.8-1 [139 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220819+rpi1 [114 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf docutils-common all 0.19+dfsg-6 [127 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf docutils-doc all 0.19+dfsg-6 [1098 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2210 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.51.0-1 [60.5 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.87.0-2 [332 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.5.0-1 [130 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-14+rpi1 [238 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.8+repack1-1 [1218 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.8+repack1-1 [64.6 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5667 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 5.3.0-3 [130 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libjson-perl all 4.10000-1 [87.5 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-11 [24.3 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf liblzf1 armhf 3.6-3 [9268 B]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11 armhf 3.11.1-2 [1666 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [901 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-dev armhf 3.11.1-2 [3375 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.11.1-2 [8936 B]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.11.1-2 [1068 B]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.9-1 [1597 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf python-babel-localedata all 2.10.3-1 [5615 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf python-requests-doc all 2.28.1+dfsg-1 [183 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf python3-alabaster all 0.7.12-1 [20.8 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.11.1-2 [1064 B]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf python3.11-dev armhf 3.11.1-2 [618 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.11.1-2 [26.2 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.11.1-2 [1064 B]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 65.6.3-1 [278 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2022.7.1-1 [32.1 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf python3-babel all 2.10.3-1 [103 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf python3-certifi all 2022.9.24-1 [153 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf python3-chardet all 5.1.0+dfsg-2 [110 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf python3-charset-normalizer all 3.0.1-2 [49.3 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 5.1.1-3 [14.9 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf python3.11-doc all 3.11.1-2 [12.6 MB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf python3-doc all 3.11.1-2 [8900 B]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf python3-roman all 3.3-3 [9880 B]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf python3-docutils all 0.19+dfsg-6 [382 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.9-1 [509 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.24.1-2 [5318 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py-serial armhf 3.7.0-3+b1 [1076 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py all 3.7.0-3 [9900 B]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf python3-idna all 3.3-1 [39.4 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf python3-imagesize all 1.4.1-1 [6688 B]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf python3-markupsafe armhf 2.1.2-1 [13.4 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf python3-jinja2 all 3.0.3-2 [121 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf python3-mappy armhf 2.24+dfsg-3+b1 [143 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf python3-nose2 all 0.12.0-1 [107 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 23.0-1 [32.5 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf python3-pygments all 2.14.0+dfsg-1 [783 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.12-1 [117 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf python3-requests all 2.28.1+dfsg-1 [67.9 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.8.1-22+rpi1 [12.9 MB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 65.6.3-1 [520 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf python3-snowballstemmer all 2.2.0-2 [57.8 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf sphinx-common all 5.3.0-3 [652 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf python3-sphinx all 5.3.0-3 [549 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf sphinx-rtd-theme-common all 1.2.0~rc1+dfsg-1 [996 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf python3-sphinx-argparse all 0.3.2-1 [37.1 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf python3-sphinx-rtd-theme all 1.2.0~rc1+dfsg-1 [26.4 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf python3-tqdm all 4.64.1-1 [97.7 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf sphinx-doc all 5.3.0-3 [2309 kB]
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Processing triggers for libc-bin (2.36-6+rpi1) ...
Setting up docutils-common (0.19+dfsg-6) ...
Processing triggers for sgml-base (1.31) ...
Setting up python3-docutils (0.19+dfsg-6) ...
Setting up python3-sphinx (5.3.0-3) ...
Setting up python3-sphinx-rtd-theme (1.2.0~rc1+dfsg-1) ...
Setting up python3-sphinx-argparse (0.3.2-1) ...
Setting up sbuild-build-depends-tombo-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.39.90.20221231-1+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-6+rpi1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.0.12-1+rpi1
Package versions: adduser_3.129 apt_2.5.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2-2 binutils_2.39.90.20221231-1+rpi1 binutils-arm-linux-gnueabihf_2.39.90.20221231-1+rpi1 binutils-common_2.39.90.20221231-1+rpi1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-14+rpi1 cython3_0.29.32-2+b1 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.80 debhelper_13.11.4 debianutils_5.7-0.4 dh-autoreconf_20 dh-python_5.20220819+rpi1 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-1 dirmngr_2.2.40-1 docutils-common_0.19+dfsg-6 docutils-doc_0.19+dfsg-6 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.44-3 findutils_4.9.0-3 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1 fonts-lato_2.0-2.1 fonts-mathjax_2.7.9+dfsg-1 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-10 gettext-base_0.21-10 gnupg_2.2.40-1 gnupg-l10n_2.2.40-1 gnupg-utils_2.2.40-1 gpg_2.2.40-1 gpg-agent_2.2.40-1 gpg-wks-client_2.2.40-1 gpg-wks-server_2.2.40-1 gpgconf_2.2.40-1 gpgsm_2.2.40-1 gpgv_2.2.40-1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-1 libacl1_2.3.1-2 libaec0_1.0.6-1 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.5-5 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.39.90.20221231-1+rpi1 libblas3_3.11.0-2 libblkid1_2.38.1-4 libbrotli1_1.0.9-2+b3 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-6+rpi1 libc-dev-bin_2.36-6+rpi1 libc6_2.36-6+rpi1 libc6-dev_2.36-6+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-14+rpi1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libctf-nobfd0_2.39.90.20221231-1+rpi1 libctf0_2.39.90.20221231-1+rpi1 libcurl4_7.87.0-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.265 libdebhelper-perl_13.11.4 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libexpat1_2.5.0-1 libexpat1-dev_2.5.0-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.2.0-14+rpi1 libgcc-s1_12.2.0-14+rpi1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-14+rpi1 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-4 libgomp1_12.2.0-14+rpi1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-1 libhdf5-103-1_1.10.8+repack1-1 libhdf5-hl-100_1.10.8+repack1-1 libhogweed6_3.8.1-2 libicu72_72.1-3 libidn2-0_2.3.3-1 libisl23_0.25-1 libjansson4_2.14-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-mathjax_2.7.9+dfsg-1 libjs-sphinxdoc_5.3.0-3 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libjson-perl_4.10000-1 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libksba8_1.6.2-4 liblapack3_3.11.0-2 liblbfgsb0_3.0+dfsg.3-11 libldap-2.5-0_2.5.13+dfsg-2+rpi1+b1 liblz4-1_1.9.4-1+rpi1 liblzf1_3.6-3 liblzma5_5.4.0-0.1 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmount1_2.38.1-4 libmpc3_1.2.1-2 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.51.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-3 libpcre3_2:8.39-14 libperl5.36_5.36.0-6 libpipeline1_1.5.7-1 libpsl5_0.21.0-1.2 libpython3-all-dev_3.11.1-2 libpython3-dev_3.11.1-2 libpython3-stdlib_3.11.1-2 libpython3.10-minimal_3.10.9-1 libpython3.10-stdlib_3.10.9-1 libpython3.11_3.11.1-2 libpython3.11-dev_3.11.1-2 libpython3.11-minimal_3.11.1-2 libpython3.11-stdlib_3.11.1-2 libreadline8_8.2-1.2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsmartcols1_2.38.1-4 libsqlite3-0_3.40.0-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.7-2 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 libsub-override-perl_0.09-4 libsystemd0_252.2-1+rpi1 libsz2_1.0.6-1 libtasn1-6_4.19.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libubsan1_12.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_252.2-1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-4 libxml2_2.9.14+dfsg-1.1+b1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.12-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-2 make_4.3-4.1 man-db_2.11.2-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-4 nano_7.1-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.4 openssl_3.0.7-2 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-6 perl-base_5.36.0-6 perl-modules-5.36_5.36.0-6 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 python-babel-localedata_2.10.3-1 python-requests-doc_2.28.1+dfsg-1 python3_3.11.1-2 python3-alabaster_0.7.12-1 python3-all_3.11.1-2 python3-all-dev_3.11.1-2 python3-babel_2.10.3-1 python3-certifi_2022.9.24-1 python3-chardet_5.1.0+dfsg-2 python3-charset-normalizer_3.0.1-2 python3-decorator_5.1.1-3 python3-dev_3.11.1-2 python3-distutils_3.10.8-1 python3-doc_3.11.1-2 python3-docutils_0.19+dfsg-6 python3-h5py_3.7.0-3 python3-h5py-serial_3.7.0-3+b1 python3-idna_3.3-1 python3-imagesize_1.4.1-1 python3-jinja2_3.0.3-2 python3-lib2to3_3.10.8-1 python3-mappy_2.24+dfsg-3+b1 python3-markupsafe_2.1.2-1 python3-minimal_3.11.1-2 python3-nose2_0.12.0-1 python3-numpy_1:1.24.1-2 python3-packaging_23.0-1 python3-pkg-resources_65.6.3-1 python3-pygments_2.14.0+dfsg-1 python3-requests_2.28.1+dfsg-1 python3-roman_3.3-3 python3-scipy_1.8.1-22+rpi1 python3-setuptools_65.6.3-1 python3-six_1.16.0-4 python3-snowballstemmer_2.2.0-2 python3-sphinx_5.3.0-3 python3-sphinx-argparse_0.3.2-1 python3-sphinx-rtd-theme_1.2.0~rc1+dfsg-1 python3-tqdm_4.64.1-1 python3-tz_2022.7.1-1 python3-urllib3_1.26.12-1 python3.10_3.10.9-1 python3.10-minimal_3.10.9-1 python3.11_3.11.1-2 python3.11-dev_3.11.1-2 python3.11-doc_3.11.1-2 python3.11-minimal_3.11.1-2 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.2 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-tombo-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sphinx-common_5.3.0-3 sphinx-doc_5.3.0-3 sphinx-rtd-theme-common_1.2.0~rc1+dfsg-1 sysvinit-utils_3.05-7 tar_1.34+dfsg-1 tzdata_2022f-1 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 xml-core_0.18+nmu1 xz-utils_5.4.0-0.1 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.Mf4TqzJV/trustedkeys.kbx': General error
gpgv: Signature made Tue Nov 29 19:53:23 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./tombo_1.5.1-4.dsc
dpkg-source: info: extracting tombo in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking tombo_1.5.1.orig.tar.gz
dpkg-source: info: unpacking tombo_1.5.1-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying no_future.patch
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying mathjax.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.5.1-4+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-a9f13c53-f8d1-41ee-8567-71fa6cc6ab29
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package tombo
dpkg-buildpackage: info: source version 1.5.1-4+b1
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3,sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3,sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:240: python3.11 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
I: pybuild base:240: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo
copying tombo/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo
copying tombo/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo
copying tombo/_default_parameters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo
copying tombo/_event_resquiggle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo
copying tombo/_filter_reads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo
copying tombo/_option_parsers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo
copying tombo/_plot_commands.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo
copying tombo/_preprocess.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo
copying tombo/_text_output_commands.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo
copying tombo/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo
copying tombo/resquiggle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo
copying tombo/tombo_helper.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo
copying tombo/tombo_stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo
running egg_info
creating ont_tombo.egg-info
writing ont_tombo.egg-info/PKG-INFO
writing dependency_links to ont_tombo.egg-info/dependency_links.txt
writing entry points to ont_tombo.egg-info/entry_points.txt
writing requirements to ont_tombo.egg-info/requires.txt
writing top-level names to ont_tombo.egg-info/top_level.txt
writing manifest file 'ont_tombo.egg-info/SOURCES.txt'
reading manifest file 'ont_tombo.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*' under directory 'cython'
adding license file 'LICENSE.md'
writing manifest file 'ont_tombo.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'tombo.R_scripts' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'tombo.R_scripts' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'tombo.R_scripts' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'tombo.R_scripts' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'tombo.tombo_models' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'tombo.tombo_models' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'tombo.tombo_models' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'tombo.tombo_models' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
copying tombo/_c_dynamic_programming.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo
copying tombo/_c_helper.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts
copying tombo/R_scripts/debugDP.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts
copying tombo/R_scripts/debugFit.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts
copying tombo/R_scripts/debugRawDP.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts
copying tombo/R_scripts/plotGroupComp.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts
copying tombo/R_scripts/plotKmerDist.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts
copying tombo/R_scripts/plotModelComp.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts
copying tombo/R_scripts/plotMotifStats.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts
copying tombo/R_scripts/plotMultiReadCorr.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts
copying tombo/R_scripts/plotPerReadStats.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts
copying tombo/R_scripts/plotROC.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts
copying tombo/R_scripts/plotROCPerRead.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts
copying tombo/R_scripts/plotReadCorr.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts
copying tombo/R_scripts/plotSigMDS.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts
copying tombo/R_scripts/plotSingleRead.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts
copying tombo/R_scripts/plotSingleRun.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.5mC.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.6mA.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.CpG.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.dam.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.dcm.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models
copying tombo/tombo_models/tombo.RNA.180mV.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models
copying tombo/tombo_models/tombo.RNA.200mV.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models
copying tombo/tombo_models/tombo.RNA.5mC.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models
running build_ext
cythoning tombo/_c_dynamic_programming.pyx to tombo/_c_dynamic_programming.cpp
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/tombo/_c_dynamic_programming.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
cythoning tombo/_c_helper.pyx to tombo/_c_helper.cpp
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/tombo/_c_helper.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
building 'tombo._c_dynamic_programming' extension
creating build
creating build/temp.linux-armhf-cpython-311
creating build/temp.linux-armhf-cpython-311/tombo
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c tombo/_c_dynamic_programming.cpp -o build/temp.linux-armhf-cpython-311/tombo/_c_dynamic_programming.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from tombo/_c_dynamic_programming.cpp:760:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
tombo/_c_dynamic_programming.cpp: In function 'PyObject* __pyx_pf_5tombo_22_c_dynamic_programming_2c_reg_z_scores(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, PyObject*)':
tombo/_c_dynamic_programming.cpp:3782:36: warning: '__pyx_v_np_max_half_z_score' may be used uninitialized [-Wmaybe-uninitialized]
3782 | __pyx_t_20 = PyFloat_FromDouble(__pyx_v_np_max_half_z_score); if (unlikely(!__pyx_t_20)) __PYX_ERR(0, 93, __pyx_L1_error)
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tombo/_c_dynamic_programming.cpp:2991:51: note: '__pyx_v_np_max_half_z_score' was declared here
2991 | __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_t __pyx_v_np_max_half_z_score;
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/tombo/_c_dynamic_programming.o -L/usr/lib/arm-linux-gnueabihf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/_c_dynamic_programming.cpython-311-arm-linux-gnueabihf.so
building 'tombo._c_helper' extension
arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c tombo/_c_helper.cpp -o build/temp.linux-armhf-cpython-311/tombo/_c_helper.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from tombo/_c_helper.cpp:760:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/tombo/_c_helper.o -L/usr/lib/arm-linux-gnueabihf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/_c_helper.cpython-311-arm-linux-gnueabihf.so
sphinx-build -N -bhtml docs docs/build
Running Sphinx v5.3.0
Creating file ./tombo.rst.
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 11 source files that are out of date
updating environment: [new config] 11 added, 0 changed, 0 removed
reading sources... [ 9%] examples
reading sources... [ 18%] filtering
reading sources... [ 27%] index
reading sources... [ 36%] model_training
reading sources... [ 45%] modified_base_detection
reading sources... [ 54%] plotting
reading sources... [ 63%] resquiggle
reading sources... [ 72%] rna
reading sources... [ 81%] text_output
reading sources... [ 90%] tombo
reading sources... [100%] tutorials
WARNING: autodoc: failed to import module 'tombo'; the following exception was raised:
No module named 'tombo'
WARNING: autodoc: failed to import module 'resquiggle' from module 'tombo'; the following exception was raised:
No module named 'tombo'
WARNING: autodoc: failed to import module 'tombo_helper' from module 'tombo'; the following exception was raised:
No module named 'tombo'
WARNING: autodoc: failed to import module 'tombo_stats' from module 'tombo'; the following exception was raised:
No module named 'tombo'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 9%] examples
writing output... [ 18%] filtering
writing output... [ 27%] index
writing output... [ 36%] model_training
writing output... [ 45%] modified_base_detection
writing output... [ 54%] plotting
writing output... [ 63%] resquiggle
writing output... [ 72%] rna
writing output... [ 81%] text_output
writing output... [ 90%] tombo
writing output... [100%] tutorials
generating indices... genindex done
writing additional pages... search done
copying images... [ 4%] _images/testing_method_comparison.png
copying images... [ 8%] _images/alt_density_est.png
copying images... [ 13%] _images/old_correction_plot.png
copying images... [ 17%] _images/outlier_robust_llr.gif
copying images... [ 21%] _images/dampened_fraction.png
copying images... [ 26%] _images/single_samp.png
copying images... [ 30%] _images/sample_comp.png
copying images... [ 34%] _images/model_comp.png
copying images... [ 39%] _images/alt_model_comp.png
copying images... [ 43%] _images/boxplot.png
copying images... [ 47%] _images/quantile.png
copying images... [ 52%] _images/density.png
copying images... [ 56%] _images/pre_read_5mC.png
copying images... [ 60%] _images/per_read_do_novo.png
copying images... [ 65%] _images/stat_dist.png
copying images... [ 69%] _images/kmer_levels.png
copying images... [ 73%] _images/roc.png
copying images... [ 78%] _images/per_read_stat_dist.png
copying images... [ 82%] _images/begin_half_z_scores.png
copying images... [ 86%] _images/begin_forward_pass.png
copying images... [ 91%] _images/adaptive_half_z_scores.png
copying images... [ 95%] _images/adaptive_forward_pass.png
copying images... [100%] _images/stat_dist_null.png
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 4 warnings.
The HTML pages are in docs/build.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:240: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build; python3.11 -m nose2 -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:240: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/tmp
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running egg_info
writing ont_tombo.egg-info/PKG-INFO
writing dependency_links to ont_tombo.egg-info/dependency_links.txt
writing entry points to ont_tombo.egg-info/entry_points.txt
writing requirements to ont_tombo.egg-info/requires.txt
writing top-level names to ont_tombo.egg-info/top_level.txt
reading manifest file 'ont_tombo.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*' under directory 'cython'
adding license file 'LICENSE.md'
writing manifest file 'ont_tombo.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'tombo.R_scripts' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'tombo.R_scripts' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'tombo.R_scripts' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'tombo.R_scripts' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'tombo.tombo_models' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'tombo.tombo_models' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'tombo.tombo_models' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'tombo.tombo_models' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
running build_ext
skipping 'tombo/_c_dynamic_programming.cpp' Cython extension (up-to-date)
skipping 'tombo/_c_helper.cpp' Cython extension (up-to-date)
running install_lib
creating /<<PKGBUILDDIR>>/debian/tmp/usr
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/__init__.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/__main__.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/_default_parameters.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/_event_resquiggle.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/_filter_reads.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/_option_parsers.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/_plot_commands.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/_preprocess.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/_text_output_commands.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/_version.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/resquiggle.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_helper.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_stats.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/_c_dynamic_programming.pyx -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/_c_helper.pyx -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts/debugDP.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts/debugFit.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts/debugRawDP.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts/plotGroupComp.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts/plotKmerDist.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts/plotModelComp.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts/plotMotifStats.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts/plotMultiReadCorr.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts/plotPerReadStats.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts/plotROC.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts/plotROCPerRead.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts/plotReadCorr.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts/plotSigMDS.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts/plotSingleRead.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/R_scripts/plotSingleRun.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/R_scripts
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models/tombo.DNA.5mC.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models/tombo.DNA.6mA.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models/tombo.DNA.CpG.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models/tombo.DNA.dam.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models/tombo.DNA.dcm.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models/tombo.DNA.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models/tombo.RNA.180mV.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models/tombo.RNA.200mV.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/tombo_models/tombo.RNA.5mC.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/_c_dynamic_programming.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/tombo/_c_helper.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/__main__.py to __main__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/_default_parameters.py to _default_parameters.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/_event_resquiggle.py to _event_resquiggle.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/_filter_reads.py to _filter_reads.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/_option_parsers.py to _option_parsers.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/_plot_commands.py to _plot_commands.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/_preprocess.py to _preprocess.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/_text_output_commands.py to _text_output_commands.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/_version.py to _version.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/resquiggle.py to resquiggle.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/tombo_helper.py to tombo_helper.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/tombo/tombo_stats.py to tombo_stats.cpython-311.pyc
running install_egg_info
Copying ont_tombo.egg-info to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages/ont_tombo-1.5.1.egg-info
Skipping SOURCES.txt
running install_scripts
Installing tombo script to /<<PKGBUILDDIR>>/debian/tmp/usr/bin
dh_install -a -O--buildsystem=pybuild
dh_installdocs -a -O--buildsystem=pybuild
dh_sphinxdoc -a -O--buildsystem=pybuild
dh_sphinxdoc: warning: Sphinx documentation not found
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
I: dh_python3 tools:114: replacing shebang in debian/tombo/usr/share/tombo/scripts/dump_per_read_statistics.py
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
find debian -name "*.model" -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'tombo' in '../tombo_1.5.1-4+b1_armhf.deb'.
dpkg-deb: building package 'tombo-dbgsym' in '../tombo-dbgsym_1.5.1-4+b1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../tombo_1.5.1-4+b1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../tombo_1.5.1-4+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-02-03T20:04:12Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
tombo_1.5.1-4+b1_armhf.changes:
-------------------------------
Format: 1.8
Date: Tue, 29 Nov 2022 20:49:19 +0100
Source: tombo (1.5.1-4)
Binary: tombo tombo-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 1.5.1-4+b1
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
tombo - identification of modified nucleotides from raw nanopore sequenci
Changes:
tombo (1.5.1-4+b1) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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bdcc3a3c0ca12e4d8c857a94f3d91735cf89d0d3 8669 tombo_1.5.1-4+b1_armhf.buildinfo
1d33b06156a265e2909a293171df2cc37a3bdd49 420684 tombo_1.5.1-4+b1_armhf.deb
Checksums-Sha256:
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Files:
9d4c00866d2fa7fc092408a81c301800 376640 debug optional tombo-dbgsym_1.5.1-4+b1_armhf.deb
8fccdc248f16cd6219762bf649da2661 8669 science optional tombo_1.5.1-4+b1_armhf.buildinfo
098baa97b1bc980f55d8b7b16405ab4f 420684 science optional tombo_1.5.1-4+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
tombo-dbgsym_1.5.1-4+b1_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 376640 bytes: control archive=648 bytes.
419 bytes, 12 lines control
297 bytes, 3 lines md5sums
Package: tombo-dbgsym
Source: tombo (1.5.1-4)
Version: 1.5.1-4+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 441
Depends: tombo (= 1.5.1-4+b1)
Section: debug
Priority: optional
Description: debug symbols for tombo
Build-Ids: a7df7b08079e43b41f5207e286149ccf9df2bf66 fdea0c9a840fa13662ecf2b0ce83960aebf5d54a
drwxr-xr-x root/root 0 2022-11-29 19:49 ./
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/lib/
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/lib/debug/.build-id/a7/
-rw-r--r-- root/root 230592 2022-11-29 19:49 ./usr/lib/debug/.build-id/a7/df7b08079e43b41f5207e286149ccf9df2bf66.debug
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/lib/debug/.build-id/fd/
-rw-r--r-- root/root 184276 2022-11-29 19:49 ./usr/lib/debug/.build-id/fd/ea0c9a840fa13662ecf2b0ce83960aebf5d54a.debug
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 21688 2022-11-29 19:49 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/tombo.debug
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/share/
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-11-29 19:49 ./usr/share/doc/tombo-dbgsym -> tombo
tombo_1.5.1-4+b1_armhf.deb
--------------------------
new Debian package, version 2.0.
size 420684 bytes: control archive=2868 bytes.
822 bytes, 15 lines control
5534 bytes, 61 lines md5sums
458 bytes, 19 lines * postinst #!/bin/sh
370 bytes, 12 lines * prerm #!/bin/sh
Package: tombo
Source: tombo (1.5.1-4)
Version: 1.5.1-4+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1422
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), cython3, python3 (<< 3.12), python3 (>= 3.11~), python3-h5py-serial, python3-mappy, python3-numpy, python3-pkg-resources, python3-scipy, python3-tqdm, python3:any, python3-h5py
Recommends: python3-pyfaidx, python3-rpy2
Section: science
Priority: optional
Homepage: https://github.com/nanoporetech/tombo
Description: identification of modified nucleotides from raw nanopore sequencing data
Tombo is a suite of tools primarily for the identification of modified
nucleotides from nanopore sequencing data. Tombo also provides tools for
the analysis and visualization of raw nanopore signal.
drwxr-xr-x root/root 0 2022-11-29 19:49 ./
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/bin/
-rwxr-xr-x root/root 960 2022-11-29 19:49 ./usr/bin/tombo
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/lib/
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/lib/python3/
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/
-rw-r--r-- root/root 6814 2022-11-29 19:49 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2022-11-29 19:49 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/dependency_links.txt
-rw-r--r-- root/root 46 2022-11-29 19:49 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/entry_points.txt
-rw-r--r-- root/root 28 2022-11-29 19:49 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/requires.txt
-rw-r--r-- root/root 6 2022-11-29 19:49 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/top_level.txt
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/lib/python3/dist-packages/tombo/
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/lib/python3/dist-packages/tombo/R_scripts/
-rw-r--r-- root/root 1254 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/debugDP.R
-rw-r--r-- root/root 1013 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/debugFit.R
-rw-r--r-- root/root 1888 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/debugRawDP.R
-rw-r--r-- root/root 5508 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotGroupComp.R
-rw-r--r-- root/root 5177 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotKmerDist.R
-rw-r--r-- root/root 12234 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotModelComp.R
-rw-r--r-- root/root 6939 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotMotifStats.R
-rw-r--r-- root/root 2942 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotMultiReadCorr.R
-rw-r--r-- root/root 3862 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotPerReadStats.R
-rw-r--r-- root/root 382 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotROC.R
-rw-r--r-- root/root 1072 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotROCPerRead.R
-rw-r--r-- root/root 1757 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotReadCorr.R
-rw-r--r-- root/root 369 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotSigMDS.R
-rw-r--r-- root/root 1499 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotSingleRead.R
-rw-r--r-- root/root 3424 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotSingleRun.R
-rw-r--r-- root/root 3547 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/__init__.py
-rw-r--r-- root/root 13107 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/__main__.py
-rw-r--r-- root/root 136948 2022-11-29 19:49 ./usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.cpython-311-arm-linux-gnueabihf.so
-rw-r--r-- root/root 17781 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.pyx
-rw-r--r-- root/root 138096 2022-11-29 19:49 ./usr/lib/python3/dist-packages/tombo/_c_helper.cpython-311-arm-linux-gnueabihf.so
-rw-r--r-- root/root 14889 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_c_helper.pyx
-rw-r--r-- root/root 5957 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_default_parameters.py
-rw-r--r-- root/root 53847 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_event_resquiggle.py
-rw-r--r-- root/root 13111 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_filter_reads.py
-rw-r--r-- root/root 75868 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_option_parsers.py
-rw-r--r-- root/root 104456 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_plot_commands.py
-rw-r--r-- root/root 19726 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_preprocess.py
-rw-r--r-- root/root 18691 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_text_output_commands.py
-rw-r--r-- root/root 65 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_version.py
-rw-r--r-- root/root 89722 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/resquiggle.py
-rw-r--r-- root/root 98581 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_helper.py
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/lib/python3/dist-packages/tombo/tombo_models/
-rw-r--r-- root/root 59864 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.5mC.model
-rw-r--r-- root/root 64557 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.6mA.model
-rw-r--r-- root/root 35716 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.CpG.model
-rw-r--r-- root/root 14775 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.dam.model
-rw-r--r-- root/root 15130 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.dcm.model
-rw-r--r-- root/root 51499 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.model
-rw-r--r-- root/root 20338 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.180mV.model
-rw-r--r-- root/root 20273 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.200mV.model
-rw-r--r-- root/root 29421 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.5mC.model
-rw-r--r-- root/root 206916 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_stats.py
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/share/
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/share/doc/tombo/
-rw-r--r-- root/root 220 2022-11-29 19:49 ./usr/share/doc/tombo/changelog.Debian.armhf.gz
-rw-r--r-- root/root 379 2022-11-29 19:49 ./usr/share/doc/tombo/changelog.Debian.gz
-rw-r--r-- root/root 3064 2022-11-29 19:49 ./usr/share/doc/tombo/copyright
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/share/man/
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/share/man/man1/
-rw-r--r-- root/root 762 2022-11-29 19:49 ./usr/share/man/man1/tombo.1.gz
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/share/python3/
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/share/python3/runtime.d/
-rwxr-xr-x root/root 125 2022-11-29 19:49 ./usr/share/python3/runtime.d/tombo.rtupdate
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/share/tombo/
drwxr-xr-x root/root 0 2022-11-29 19:49 ./usr/share/tombo/scripts/
-rw-r--r-- root/root 1141 2020-02-20 00:02 ./usr/share/tombo/scripts/debug_bandwidth.R
-rw-r--r-- root/root 6024 2020-02-20 00:02 ./usr/share/tombo/scripts/debug_est_alt.R
-rw-r--r-- root/root 3137 2020-02-20 00:02 ./usr/share/tombo/scripts/debug_params.R
-rwxr-xr-x root/root 1823 2022-11-29 19:49 ./usr/share/tombo/scripts/dump_per_read_statistics.py
-rw-r--r-- root/root 1452 2020-02-20 00:02 ./usr/share/tombo/scripts/outlier_robust_llr.R
-rw-r--r-- root/root 467 2020-02-20 00:02 ./usr/share/tombo/scripts/plot_correction.py
-rw-r--r-- root/root 632 2020-02-20 00:02 ./usr/share/tombo/scripts/plot_multi_correction.py
-rw-r--r-- root/root 1238 2020-02-20 00:02 ./usr/share/tombo/scripts/plot_single_read.py
-rw-r--r-- root/root 398 2020-02-20 00:02 ./usr/share/tombo/scripts/test_beta_priors.R
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 64448
Build-Time: 84
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 687
Job: tombo_1.5.1-4
Machine Architecture: armhf
Package: tombo
Package-Time: 800
Source-Version: 1.5.1-4
Space: 64448
Status: successful
Version: 1.5.1-4+b1
--------------------------------------------------------------------------------
Finished at 2023-02-03T20:04:12Z
Build needed 00:13:20, 64448k disk space