tombo →
1.5.1-3 →
armhf → 2021-10-11 11:38:40
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd
+==============================================================================+
| tombo 1.5.1-3 (armhf) Mon, 11 Oct 2021 11:15:53 +0000 |
+==============================================================================+
Package: tombo
Version: 1.5.1-3
Source Version: 1.5.1-3
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-14bb662f-dec2-4bd7-8f71-633ea7de35b7' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.8 MB in 30s (854 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'tombo' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/tombo.git
Please use:
git clone https://salsa.debian.org/med-team/tombo.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 22.3 MB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main tombo 1.5.1-3 (dsc) [2292 B]
Get:2 http://172.17.0.1/private bookworm-staging/main tombo 1.5.1-3 (tar) [22.3 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main tombo 1.5.1-3 (diff) [6436 B]
Fetched 22.3 MB in 8s (2683 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/tombo-jTofDP/tombo-1.5.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/tombo-jTofDP' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-CVmjTP/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-CVmjTP/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-CVmjTP/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-CVmjTP/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-CVmjTP/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-CVmjTP/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-CVmjTP/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-CVmjTP/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2679 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 22 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-CVmjTP/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (14.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, cython3, sphinx-doc, python3-sphinx, python3-sphinx-rtd-theme, python3-sphinx-argparse, libjs-mathjax, python3-h5py, python3-mappy, python3-numpy, python3-scipy, python3-tqdm, python3-nose2
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, cython3, sphinx-doc, python3-sphinx, python3-sphinx-rtd-theme, python3-sphinx-argparse, libjs-mathjax, python3-h5py, python3-mappy, python3-numpy, python3-scipy, python3-tqdm, python3-nose2
dpkg-deb: building package 'sbuild-build-depends-tombo-dummy' in '/<<BUILDDIR>>/resolver-CVmjTP/apt_archive/sbuild-build-depends-tombo-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-tombo-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-CVmjTP/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-CVmjTP/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-CVmjTP/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-CVmjTP/apt_archive ./ Sources [597 B]
Get:5 copy:/<<BUILDDIR>>/resolver-CVmjTP/apt_archive ./ Packages [670 B]
Fetched 2600 B in 1s (3185 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install tombo build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism
docutils-common docutils-doc dwz file fonts-font-awesome fonts-lato
fonts-mathjax gcc-11-base gettext gettext-base groff-base intltool-debian
libaec0 libarchive-zip-perl libasan6 libatomic1 libblas3 libcc1-0
libdebhelper-perl libelf1 libexpat1 libexpat1-dev libffi8
libfile-stripnondeterminism-perl libgcc-s1 libgfortran5 libgomp1
libhdf5-103-1 libhdf5-hl-100 libicu67 libjs-jquery libjs-mathjax
libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblzf1 libmagic-mgc
libmagic1 libmpdec3 libpipeline1 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib libsigsegv2 libstdc++6 libsub-override-perl libsz2
libtool libubsan1 libuchardet0 libxml2 m4 man-db media-types openssl
po-debconf python-babel-localedata python-requests-doc python3
python3-alabaster python3-all python3-all-dev python3-babel python3-certifi
python3-chardet python3-coverage python3-decorator python3-dev
python3-distutils python3-doc python3-docutils python3-h5py
python3-h5py-serial python3-idna python3-imagesize python3-jinja2
python3-lib2to3 python3-mappy python3-markupsafe python3-minimal
python3-nose2 python3-numpy python3-packaging python3-pkg-resources
python3-pygments python3-pyparsing python3-requests python3-roman
python3-scipy python3-setuptools python3-six python3-snowballstemmer
python3-sphinx python3-sphinx-argparse python3-sphinx-rtd-theme python3-tqdm
python3-tz python3-urllib3 python3.9 python3.9-dev python3.9-doc
python3.9-minimal sensible-utils sgml-base sphinx-common sphinx-doc
sphinx-rtd-theme-common xml-core zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cython-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff fonts-mathjax-extras fonts-stix
libjs-mathjax-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser libmail-box-perl python3-tk python3-venv
python-coverage-doc python3-examples fonts-linuxlibertine
| ttf-linux-libertine texlive-lang-french texlive-latex-base
texlive-latex-recommended python-h5py-doc python-jinja2-doc python-nose2-doc
gfortran python-numpy-doc python3-numpy-dbg python3-pytest
python-pygments-doc ttf-bitstream-vera python-pyparsing-doc
python3-cryptography python3-openssl python3-socks python-scipy-doc
python-setuptools-doc python3-stemmer dvipng fonts-freefont-otf
imagemagick-6.q16 latexmk texlive-fonts-recommended texlive-latex-extra
texlive-plain-generic python3.9-venv binfmt-support sgml-base-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl javascript-common libltdl-dev
libmail-sendmail-perl libjs-jquery-isonscreen libjs-jquery-tablesorter
libjs-jquery-throttle-debounce libpaper-utils python3-pil
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism
docutils-common docutils-doc dwz file fonts-font-awesome fonts-lato
fonts-mathjax gettext gettext-base groff-base intltool-debian libaec0
libarchive-zip-perl libblas3 libdebhelper-perl libelf1 libexpat1
libexpat1-dev libffi8 libfile-stripnondeterminism-perl libgfortran5
libhdf5-103-1 libhdf5-hl-100 libicu67 libjs-jquery libjs-mathjax
libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblzf1 libmagic-mgc
libmagic1 libmpdec3 libpipeline1 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib libsigsegv2 libsub-override-perl libsz2 libtool
libuchardet0 libxml2 m4 man-db media-types openssl po-debconf
python-babel-localedata python-requests-doc python3 python3-alabaster
python3-all python3-all-dev python3-babel python3-certifi python3-chardet
python3-coverage python3-decorator python3-dev python3-distutils python3-doc
python3-docutils python3-h5py python3-h5py-serial python3-idna
python3-imagesize python3-jinja2 python3-lib2to3 python3-mappy
python3-markupsafe python3-minimal python3-nose2 python3-numpy
python3-packaging python3-pkg-resources python3-pygments python3-pyparsing
python3-requests python3-roman python3-scipy python3-setuptools python3-six
python3-snowballstemmer python3-sphinx python3-sphinx-argparse
python3-sphinx-rtd-theme python3-tqdm python3-tz python3-urllib3 python3.9
python3.9-dev python3.9-doc python3.9-minimal
sbuild-build-depends-tombo-dummy sensible-utils sgml-base sphinx-common
sphinx-doc sphinx-rtd-theme-common xml-core zlib1g-dev
The following packages will be upgraded:
gcc-11-base libasan6 libatomic1 libcc1-0 libgcc-s1 libgomp1 libstdc++6
libubsan1
8 upgraded, 118 newly installed, 0 to remove and 14 not upgraded.
Need to get 88.0 MB of archives.
After this operation, 375 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-CVmjTP/apt_archive ./ sbuild-build-depends-tombo-dummy 0.invalid.0 [956 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-1 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-7+rpi1 [1944 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-7+rpi1 [797 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-7+rpi1 [88.1 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-7+rpi1 [205 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-7+rpi1 [36.2 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-7+rpi1 [37.7 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-7+rpi1 [8188 B]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-7+rpi1 [465 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf fonts-lato all 2.0-2.1 [2696 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.7-4+rpi1 [794 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-2 [80.3 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.7-4+rpi1 [1632 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf libffi8 armhf 3.4.2-2 [21.2 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.7-4+rpi1 [1618 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf python3.9 armhf 3.9.7-4+rpi1 [480 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf python3 armhf 3.9.2-3 [37.9 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf sgml-base all 1.30 [15.1 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf openssl armhf 1.1.1l-1 [815 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf cython3 armhf 0.29.21-3+b1 [1234 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.7-1 [79.4 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf python3-distutils all 3.9.7-1 [146 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf dh-python all 4.20201102+nmu1 [99.4 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf docutils-common all 0.16+dfsg-4 [129 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf docutils-doc all 0.16+dfsg-4 [932 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2210 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.1-2 [135 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-7+rpi1 [235 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.7+repack-1 [1232 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.7+repack-1 [81.8 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5667 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libjs-underscore all 1.9.1~dfsg-4 [100 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libjs-sphinxdoc all 3.5.4-2 [130 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-9 [24.6 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf liblzf1 armhf 3.6-3 [9268 B]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.7-4+rpi1 [1416 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.7-4+rpi1 [3060 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libpython3-dev armhf 3.9.2-3 [21.7 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.9.2-3 [1068 B]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf python-requests-doc all 2.25.1+dfsg-2 [195 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf python3-alabaster all 0.7.12-1 [20.8 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf python3-all armhf 3.9.2-3 [1056 B]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.7-4+rpi1 [501 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf python3-dev armhf 3.9.2-3 [24.8 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf python3-all-dev armhf 3.9.2-3 [1064 B]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf python3-pkg-resources all 52.0.0-4 [190 kB]
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Get:93 http://172.17.0.1/private bookworm-staging/main armhf python3-babel all 2.8.0+dfsg.1-7 [100 kB]
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Get:98 http://172.17.0.1/private bookworm-staging/main armhf python3.9-doc all 3.9.7-4+rpi1 [11.0 MB]
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Get:100 http://172.17.0.1/private bookworm-staging/main armhf python3-roman all 2.0.0-5 [9064 B]
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Get:108 http://172.17.0.1/private bookworm-staging/main armhf python3-jinja2 all 2.11.3-1 [114 kB]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf python3-mappy armhf 2.17+dfsg-12+b1 [133 kB]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf python3-six all 1.16.0-2 [17.5 kB]
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Get:114 http://172.17.0.1/private bookworm-staging/main armhf python3-pygments all 2.7.1+dfsg-2.1 [657 kB]
Get:115 http://172.17.0.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.5-1~exp1 [114 kB]
Get:116 http://172.17.0.1/private bookworm-staging/main armhf python3-requests all 2.25.1+dfsg-2 [69.3 kB]
Get:117 http://172.17.0.1/private bookworm-staging/main armhf python3-scipy armhf 1.6.0-2 [11.1 MB]
Get:118 http://172.17.0.1/private bookworm-staging/main armhf python3-setuptools all 52.0.0-4 [366 kB]
Get:119 http://172.17.0.1/private bookworm-staging/main armhf python3-snowballstemmer all 2.1.0-2 [58.8 kB]
Get:120 http://172.17.0.1/private bookworm-staging/main armhf sphinx-common all 3.5.4-2 [576 kB]
Get:121 http://172.17.0.1/private bookworm-staging/main armhf python3-sphinx all 3.5.4-2 [524 kB]
Get:122 http://172.17.0.1/private bookworm-staging/main armhf sphinx-rtd-theme-common all 1.0.0+dfsg-1 [996 kB]
Get:123 http://172.17.0.1/private bookworm-staging/main armhf python3-sphinx-argparse all 0.2.5-1 [35.9 kB]
Get:124 http://172.17.0.1/private bookworm-staging/main armhf python3-sphinx-rtd-theme all 1.0.0+dfsg-1 [26.5 kB]
Get:125 http://172.17.0.1/private bookworm-staging/main armhf python3-tqdm all 4.57.0-2 [93.2 kB]
Get:126 http://172.17.0.1/private bookworm-staging/main armhf sphinx-doc all 3.5.4-2 [1976 kB]
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Setting up media-types (4.0.0) ...
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update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
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Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ...
Setting up openssl (1.1.1l-1) ...
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Setting up libxml2:armhf (2.9.12+dfsg-5) ...
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Setting up libcc1-0:armhf (11.2.0-7+rpi1) ...
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Updating certificates in /etc/ssl/certs...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up python3 (3.9.2-3) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-markupsafe (1.1.1-1+b1) ...
Setting up python3-tz (2021.3-1) ...
Setting up python3-six (1.16.0-2) ...
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Setting up cython3 (0.29.21-3+b1) ...
Setting up python3-urllib3 (1.26.5-1~exp1) ...
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Setting up python3-lib2to3 (3.9.7-1) ...
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Setting up python3-distutils (3.9.7-1) ...
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update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
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Setting up python3-tqdm (4.57.0-2) ...
Setting up python3-all (3.9.2-3) ...
Setting up python3-coverage (5.1+dfsg.1-2+b1) ...
Setting up debhelper (13.5.2) ...
Setting up python3-mappy (2.17+dfsg-12+b1) ...
Setting up python3-nose2 (0.9.2-1) ...
Setting up python3-pygments (2.7.1+dfsg-2.1) ...
Setting up python3-packaging (20.9-2) ...
Setting up python3-chardet (4.0.0-1) ...
Setting up libpython3-all-dev:armhf (3.9.2-3) ...
Setting up python3-dev (3.9.2-3) ...
Setting up python3-requests (2.25.1+dfsg-2) ...
Setting up python3-numpy (1:1.19.5-1) ...
Setting up python3-all-dev (3.9.2-3) ...
Setting up python3-scipy (1.6.0-2) ...
Setting up python3-h5py-serial (3.3.0-2) ...
Setting up python3-h5py (3.3.0-2) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
Processing triggers for sgml-base (1.30) ...
Setting up docutils-common (0.16+dfsg-4) ...
Processing triggers for sgml-base (1.30) ...
Setting up python3-docutils (0.16+dfsg-4) ...
update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python3-sphinx (3.5.4-2) ...
Setting up python3-sphinx-rtd-theme (1.0.0+dfsg-1) ...
Setting up python3-sphinx-argparse (0.2.5-1) ...
Setting up sbuild-build-depends-tombo-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-9+rpi1 gcc-10_10.3.0-9+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-7+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-1 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-9+rpi1 cython3_0.29.21-3+b1 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-python_4.20201102+nmu1 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 docutils-common_0.16+dfsg-4 docutils-doc_0.16+dfsg-4 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1 fonts-lato_2.0-2.1 fonts-mathjax_2.7.9+dfsg-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-9+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-9+rpi1 gcc-10-base_10.3.0-9+rpi1 gcc-11-base_11.2.0-7+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libaec0_1.0.6-1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libasan6_11.2.0-7+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-7+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-5+rpi1 libblas3_3.9.0-3 libblkid1_2.37.2-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-7+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libexpat1_2.4.1-2 libexpat1-dev_2.4.1-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libffi8_3.4.2-2 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.3.0-9+rpi1 libgcc-s1_11.2.0-7+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgfortran5_11.2.0-7+rpi1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-7+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhdf5-103-1_1.10.7+repack-1 libhdf5-hl-100_1.10.7+repack-1 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.23-1 libjs-jquery_3.5.1+dfsg+~3.5.5-7 libjs-mathjax_2.7.9+dfsg-1 libjs-sphinxdoc_3.5.4-2 libjs-underscore_1.9.1~dfsg-4 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 liblapack3_3.9.0-3 liblbfgsb0_3.0+dfsg.3-9 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzf1_3.6-3 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libpython3-all-dev_3.9.2-3 libpython3-dev_3.9.2-3 libpython3-stdlib_3.9.2-3 libpython3.9_3.9.7-4+rpi1 libpython3.9-dev_3.9.7-4+rpi1 libpython3.9-minimal_3.9.7-4+rpi1 libpython3.9-stdlib_3.9.7-4+rpi1 libreadline8_8.1-2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-1 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-7+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.9-1+rpi1 libsz2_1.0.6-1 libtasn1-6_4.17.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-7+rpi1 libuchardet0_0.0.7-1 libudev1_247.9-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mount_2.37.2-1 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 openssl_1.1.1l-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python-babel-localedata_2.8.0+dfsg.1-7 python-requests-doc_2.25.1+dfsg-2 python3_3.9.2-3 python3-alabaster_0.7.12-1 python3-all_3.9.2-3 python3-all-dev_3.9.2-3 python3-babel_2.8.0+dfsg.1-7 python3-certifi_2020.6.20-1 python3-chardet_4.0.0-1 python3-coverage_5.1+dfsg.1-2+b1 python3-decorator_4.4.2-2 python3-dev_3.9.2-3 python3-distutils_3.9.7-1 python3-doc_3.9.2-3 python3-docutils_0.16+dfsg-4 python3-h5py_3.3.0-2 python3-h5py-serial_3.3.0-2 python3-idna_2.10-1 python3-imagesize_1.2.0-2 python3-jinja2_2.11.3-1 python3-lib2to3_3.9.7-1 python3-mappy_2.17+dfsg-12+b1 python3-markupsafe_1.1.1-1+b1 python3-minimal_3.9.2-3 python3-nose2_0.9.2-1 python3-numpy_1:1.19.5-1 python3-packaging_20.9-2 python3-pkg-resources_52.0.0-4 python3-pygments_2.7.1+dfsg-2.1 python3-pyparsing_2.4.7-1 python3-requests_2.25.1+dfsg-2 python3-roman_2.0.0-5 python3-scipy_1.6.0-2 python3-setuptools_52.0.0-4 python3-six_1.16.0-2 python3-snowballstemmer_2.1.0-2 python3-sphinx_3.5.4-2 python3-sphinx-argparse_0.2.5-1 python3-sphinx-rtd-theme_1.0.0+dfsg-1 python3-tqdm_4.57.0-2 python3-tz_2021.3-1 python3-urllib3_1.26.5-1~exp1 python3.9_3.9.7-4+rpi1 python3.9-dev_3.9.7-4+rpi1 python3.9-doc_3.9.7-4+rpi1 python3.9-minimal_3.9.7-4+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-tombo-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sphinx-common_3.5.4-2 sphinx-doc_3.5.4-2 sphinx-rtd-theme-common_1.0.0+dfsg-1 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.37.2-1 xml-core_0.18+nmu1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.fUydzJqG/trustedkeys.kbx': General error
gpgv: Signature made Fri Oct 8 14:12:17 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./tombo_1.5.1-3.dsc
dpkg-source: info: extracting tombo in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking tombo_1.5.1.orig.tar.gz
dpkg-source: info: unpacking tombo_1.5.1-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying no_future.patch
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying mathjax.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-14bb662f-dec2-4bd7-8f71-633ea7de35b7
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package tombo
dpkg-buildpackage: info: source version 1.5.1-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3,sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3,sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
I: pybuild base:232: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_default_parameters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_event_resquiggle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_filter_reads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_option_parsers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_plot_commands.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_preprocess.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_text_output_commands.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/resquiggle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/tombo_helper.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/tombo_stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
running egg_info
creating ont_tombo.egg-info
writing ont_tombo.egg-info/PKG-INFO
writing dependency_links to ont_tombo.egg-info/dependency_links.txt
writing entry points to ont_tombo.egg-info/entry_points.txt
writing requirements to ont_tombo.egg-info/requires.txt
writing top-level names to ont_tombo.egg-info/top_level.txt
writing manifest file 'ont_tombo.egg-info/SOURCES.txt'
reading manifest file 'ont_tombo.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*' under directory 'cython'
writing manifest file 'ont_tombo.egg-info/SOURCES.txt'
copying tombo/_c_dynamic_programming.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_c_helper.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/debugDP.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/debugFit.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/debugRawDP.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotGroupComp.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotKmerDist.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotModelComp.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotMotifStats.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotMultiReadCorr.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotPerReadStats.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotROC.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotROCPerRead.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotReadCorr.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotSigMDS.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotSingleRead.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotSingleRun.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.5mC.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.6mA.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.CpG.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.dam.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.dcm.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.RNA.180mV.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.RNA.200mV.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.RNA.5mC.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
running build_ext
cythoning tombo/_c_dynamic_programming.pyx to tombo/_c_dynamic_programming.cpp
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/tombo/_c_dynamic_programming.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
cythoning tombo/_c_helper.pyx to tombo/_c_helper.cpp
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/tombo/_c_helper.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
building 'tombo._c_dynamic_programming' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/tombo
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c tombo/_c_dynamic_programming.cpp -o build/temp.linux-armhf-3.9/tombo/_c_dynamic_programming.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from tombo/_c_dynamic_programming.cpp:624:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
tombo/_c_dynamic_programming.cpp: In function 'PyObject* __pyx_pf_5tombo_22_c_dynamic_programming_2c_reg_z_scores(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, PyObject*)':
tombo/_c_dynamic_programming.cpp:3638:36: warning: '__pyx_v_np_max_half_z_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
3638 | __pyx_t_20 = PyFloat_FromDouble(__pyx_v_np_max_half_z_score); if (unlikely(!__pyx_t_20)) __PYX_ERR(0, 93, __pyx_L1_error)
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/tombo/_c_dynamic_programming.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_dynamic_programming.cpython-39-arm-linux-gnueabihf.so
building 'tombo._c_helper' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c tombo/_c_helper.cpp -o build/temp.linux-armhf-3.9/tombo/_c_helper.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
from tombo/_c_helper.cpp:624:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/tombo/_c_helper.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_helper.cpython-39-arm-linux-gnueabihf.so
sphinx-build -N -bhtml docs docs/build
Running Sphinx v3.5.4
Creating file ./tombo.rst.
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 11 source files that are out of date
updating environment: [new config] 11 added, 0 changed, 0 removed
reading sources... [ 9%] examples
reading sources... [ 18%] filtering
reading sources... [ 27%] index
reading sources... [ 36%] model_training
reading sources... [ 45%] modified_base_detection
reading sources... [ 54%] plotting
reading sources... [ 63%] resquiggle
reading sources... [ 72%] rna
reading sources... [ 81%] text_output
reading sources... [ 90%] tombo
reading sources... [100%] tutorials
WARNING: autodoc: failed to import module 'tombo'; the following exception was raised:
No module named 'tombo'
WARNING: autodoc: failed to import module 'resquiggle' from module 'tombo'; the following exception was raised:
No module named 'tombo'
WARNING: autodoc: failed to import module 'tombo_helper' from module 'tombo'; the following exception was raised:
No module named 'tombo'
WARNING: autodoc: failed to import module 'tombo_stats' from module 'tombo'; the following exception was raised:
No module named 'tombo'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 9%] examples
writing output... [ 18%] filtering
writing output... [ 27%] index
writing output... [ 36%] model_training
writing output... [ 45%] modified_base_detection
writing output... [ 54%] plotting
writing output... [ 63%] resquiggle
writing output... [ 72%] rna
writing output... [ 81%] text_output
writing output... [ 90%] tombo
writing output... [100%] tutorials
generating indices... genindex done
writing additional pages... search done
copying images... [ 4%] _images/testing_method_comparison.png
copying images... [ 8%] _images/alt_density_est.png
copying images... [ 13%] _images/old_correction_plot.png
copying images... [ 17%] _images/outlier_robust_llr.gif
copying images... [ 21%] _images/dampened_fraction.png
copying images... [ 26%] _images/single_samp.png
copying images... [ 30%] _images/sample_comp.png
copying images... [ 34%] _images/model_comp.png
copying images... [ 39%] _images/alt_model_comp.png
copying images... [ 43%] _images/boxplot.png
copying images... [ 47%] _images/quantile.png
copying images... [ 52%] _images/density.png
copying images... [ 56%] _images/pre_read_5mC.png
copying images... [ 60%] _images/per_read_do_novo.png
copying images... [ 65%] _images/stat_dist.png
copying images... [ 69%] _images/kmer_levels.png
copying images... [ 73%] _images/roc.png
copying images... [ 78%] _images/per_read_stat_dist.png
copying images... [ 82%] _images/begin_half_z_scores.png
copying images... [ 86%] _images/begin_forward_pass.png
copying images... [ 91%] _images/adaptive_half_z_scores.png
copying images... [ 95%] _images/adaptive_forward_pass.png
copying images... [100%] _images/stat_dist_null.png
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 4 warnings.
The HTML pages are in docs/build.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build; python3.9 -m nose2 -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/tmp
running install
running build
running build_py
running egg_info
writing ont_tombo.egg-info/PKG-INFO
writing dependency_links to ont_tombo.egg-info/dependency_links.txt
writing entry points to ont_tombo.egg-info/entry_points.txt
writing requirements to ont_tombo.egg-info/requires.txt
writing top-level names to ont_tombo.egg-info/top_level.txt
reading manifest file 'ont_tombo.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*' under directory 'cython'
writing manifest file 'ont_tombo.egg-info/SOURCES.txt'
running build_ext
skipping 'tombo/_c_dynamic_programming.cpp' Cython extension (up-to-date)
skipping 'tombo/_c_helper.cpp' Cython extension (up-to-date)
running install_lib
creating /<<PKGBUILDDIR>>/debian/tmp/usr
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/__init__.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/__main__.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_default_parameters.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_event_resquiggle.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_filter_reads.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_option_parsers.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_plot_commands.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_preprocess.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_text_output_commands.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_version.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/resquiggle.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_helper.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_stats.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_dynamic_programming.pyx -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_helper.pyx -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/debugDP.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/debugFit.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/debugRawDP.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotGroupComp.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotKmerDist.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotModelComp.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotMotifStats.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotMultiReadCorr.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotPerReadStats.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotROC.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotROCPerRead.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotReadCorr.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotSigMDS.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotSingleRead.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotSingleRun.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.5mC.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.6mA.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.CpG.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.dam.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.dcm.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.RNA.180mV.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.RNA.200mV.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.RNA.5mC.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_dynamic_programming.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_helper.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/__main__.py to __main__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_default_parameters.py to _default_parameters.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_event_resquiggle.py to _event_resquiggle.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_filter_reads.py to _filter_reads.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_option_parsers.py to _option_parsers.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_plot_commands.py to _plot_commands.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_preprocess.py to _preprocess.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_text_output_commands.py to _text_output_commands.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_version.py to _version.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/resquiggle.py to resquiggle.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_helper.py to tombo_helper.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_stats.py to tombo_stats.cpython-39.pyc
running install_egg_info
Copying ont_tombo.egg-info to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/ont_tombo-1.5.1.egg-info
Skipping SOURCES.txt
running install_scripts
Installing tombo script to /<<PKGBUILDDIR>>/debian/tmp/usr/bin
dh_install -a -O--buildsystem=pybuild
dh_installdocs -a -O--buildsystem=pybuild
dh_sphinxdoc -a -O--buildsystem=pybuild
dh_sphinxdoc: warning: Sphinx documentation not found
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
I: dh_python3 tools:114: replacing shebang in debian/tombo/usr/share/tombo/scripts/dump_per_read_statistics.py
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
find debian -name "*.model" -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tombo/usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.cpython-39-arm-linux-gnueabihf.so debian/tombo/usr/lib/python3/dist-packages/tombo/_c_helper.cpython-39-arm-linux-gnueabihf.so were not linked against libpthread.so.0 (they use none of the library's symbols)
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package tombo: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package tombo: substitution variable ${python3:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'tombo-dbgsym' in '../tombo-dbgsym_1.5.1-3_armhf.deb'.
dpkg-deb: building package 'tombo' in '../tombo_1.5.1-3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../tombo_1.5.1-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-10-11T11:38:33Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
tombo_1.5.1-3_armhf.changes:
----------------------------
Format: 1.8
Date: Thu, 07 Oct 2021 10:23:35 +0200
Source: tombo
Binary: tombo tombo-dbgsym
Architecture: armhf
Version: 1.5.1-3
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
tombo - identification of modified nucleotides from raw nanopore sequenci
Changes:
tombo (1.5.1-3) unstable; urgency=medium
.
* Fix watchfile to detect new versions on github
* Standards-Version: 4.6.0 (routine-update)
Checksums-Sha1:
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791d7a1ac5d15dee83d0b3a2a7251d69915f5eb3 7664 tombo_1.5.1-3_armhf.buildinfo
ea2f112b6cceec926dc0b756274df677e7382d5e 420604 tombo_1.5.1-3_armhf.deb
Checksums-Sha256:
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f8d28cc021324be05101072270ba69e79df55071c809348bc596be78fe63197e 420604 tombo_1.5.1-3_armhf.deb
Files:
f746fe94bc1c1d9f2cddf3ea899b968f 350404 debug optional tombo-dbgsym_1.5.1-3_armhf.deb
f456ba0f63f0475567f528b3897d833b 7664 science optional tombo_1.5.1-3_armhf.buildinfo
9d37aa2636dad9b6a47208122c7556eb 420604 science optional tombo_1.5.1-3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
tombo-dbgsym_1.5.1-3_armhf.deb
------------------------------
new Debian package, version 2.0.
size 350404 bytes: control archive=644 bytes.
403 bytes, 12 lines control
297 bytes, 3 lines md5sums
Package: tombo-dbgsym
Source: tombo
Version: 1.5.1-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 417
Depends: tombo (= 1.5.1-3)
Section: debug
Priority: optional
Description: debug symbols for tombo
Build-Ids: 435419b070cef96b343bb3c654cc56af3c9164d1 b170442ec885e7c3019881fa175d586f62f59aca
drwxr-xr-x root/root 0 2021-10-07 08:23 ./
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/lib/
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/lib/debug/.build-id/43/
-rw-r--r-- root/root 220148 2021-10-07 08:23 ./usr/lib/debug/.build-id/43/5419b070cef96b343bb3c654cc56af3c9164d1.debug
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/lib/debug/.build-id/b1/
-rw-r--r-- root/root 171388 2021-10-07 08:23 ./usr/lib/debug/.build-id/b1/70442ec885e7c3019881fa175d586f62f59aca.debug
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 20876 2021-10-07 08:23 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/tombo.debug
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/share/
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-10-07 08:23 ./usr/share/doc/tombo-dbgsym -> tombo
tombo_1.5.1-3_armhf.deb
-----------------------
new Debian package, version 2.0.
size 420604 bytes: control archive=2844 bytes.
794 bytes, 14 lines control
5452 bytes, 60 lines md5sums
414 bytes, 19 lines * postinst #!/bin/sh
384 bytes, 12 lines * prerm #!/bin/sh
Package: tombo
Version: 1.5.1-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1379
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), cython3, python3 (<< 3.10), python3 (>= 3.9~), python3-h5py-serial, python3-mappy, python3-numpy, python3-pkg-resources, python3-scipy, python3-tqdm, python3:any, python3-h5py
Recommends: python3-pyfaidx, python3-rpy2
Section: science
Priority: optional
Homepage: https://github.com/nanoporetech/tombo
Description: identification of modified nucleotides from raw nanopore sequencing data
Tombo is a suite of tools primarily for the identification of modified
nucleotides from nanopore sequencing data. Tombo also provides tools for
the analysis and visualization of raw nanopore signal.
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Build Architecture: armhf
Build-Space: 64708
Build-Time: 198
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1095
Job: tombo_1.5.1-3
Machine Architecture: armhf
Package: tombo
Package-Time: 1360
Source-Version: 1.5.1-3
Space: 64708
Status: successful
Version: 1.5.1-3
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Finished at 2021-10-11T11:38:33Z
Build needed 00:22:40, 64708k disc space