Raspbian Package Auto-Building

tombo → 1.5.1-3+b1 → armhf → 2022-04-23 15:17:18

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard

+==============================================================================+
| tombo 1.5.1-3+b1 (armhf)                     Sat, 23 Apr 2022 14:50:25 +0000 |
+==============================================================================+

Package: tombo
Version: 1.5.1-3+b1
Source Version: 1.5.1-3
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-485c641d-4b14-4cd7-86ad-dd46b4cf2545' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.0 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.9 MB]
Fetched 26.8 MB in 30s (909 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'tombo' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/tombo.git
Please use:
git clone https://salsa.debian.org/med-team/tombo.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 22.3 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main tombo 1.5.1-3 (dsc) [2292 B]
Get:2 http://172.17.4.1/private bookworm-staging/main tombo 1.5.1-3 (tar) [22.3 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main tombo 1.5.1-3 (diff) [6436 B]
Fetched 22.3 MB in 5s (4308 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/tombo-2o3QiB/tombo-1.5.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/tombo-2o3QiB' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-z0SRYv/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-z0SRYv/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-z0SRYv/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-z0SRYv/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-z0SRYv/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-z0SRYv/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-z0SRYv/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-z0SRYv/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2747 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 53 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-z0SRYv/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (13.8 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12608 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, cython3, sphinx-doc, python3-sphinx, python3-sphinx-rtd-theme, python3-sphinx-argparse, libjs-mathjax, python3-h5py, python3-mappy, python3-numpy, python3-scipy, python3-tqdm, python3-nose2
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, cython3, sphinx-doc, python3-sphinx, python3-sphinx-rtd-theme, python3-sphinx-argparse, libjs-mathjax, python3-h5py, python3-mappy, python3-numpy, python3-scipy, python3-tqdm, python3-nose2
dpkg-deb: building package 'sbuild-build-depends-tombo-dummy' in '/<<BUILDDIR>>/resolver-z0SRYv/apt_archive/sbuild-build-depends-tombo-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-tombo-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-z0SRYv/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-z0SRYv/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-z0SRYv/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-z0SRYv/apt_archive ./ Sources [597 B]
Get:5 copy:/<<BUILDDIR>>/resolver-z0SRYv/apt_archive ./ Packages [668 B]
Fetched 2598 B in 1s (3466 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install tombo build dependencies (apt-based resolver)
-----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism
  docutils-common docutils-doc dwz file fonts-font-awesome fonts-lato
  fonts-mathjax gcc-12-base gettext gettext-base groff-base intltool-debian
  libaec0 libarchive-zip-perl libblas3 libbrotli1 libcurl4 libdebhelper-perl
  libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
  libgfortran5 libhdf5-103-1 libhdf5-hl-100 libicu67 libjs-jquery
  libjs-mathjax libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblzf1
  libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5
  libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10
  libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.9
  libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib librtmp1
  libsigsegv2 libsmartcols1 libssh2-1 libsub-override-perl libsz2 libtool
  libuchardet0 libunicode-escape-perl libunicode-string-perl libxml2 m4 man-db
  media-types openssl po-debconf python-babel-localedata python-requests-doc
  python3 python3-alabaster python3-all python3-all-dev python3-babel
  python3-certifi python3-chardet python3-charset-normalizer python3-coverage
  python3-decorator python3-dev python3-distutils python3-doc python3-docutils
  python3-h5py python3-h5py-serial python3-idna python3-imagesize
  python3-importlib-metadata python3-jinja2 python3-lib2to3 python3-mappy
  python3-markupsafe python3-minimal python3-more-itertools python3-nose2
  python3-numpy python3-packaging python3-pkg-resources python3-pygments
  python3-pyparsing python3-requests python3-roman python3-scipy
  python3-setuptools python3-six python3-snowballstemmer python3-sphinx
  python3-sphinx-argparse python3-sphinx-rtd-theme python3-tqdm python3-tz
  python3-urllib3 python3-zipp python3.10 python3.10-dev python3.10-doc
  python3.10-minimal python3.9 python3.9-dev python3.9-minimal sgml-base
  sphinx-common sphinx-doc sphinx-rtd-theme-common xml-core zlib1g zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc cython-doc dh-make flit
  python3-build python3-tomli python3-installer gettext-doc libasprintf-dev
  libgettextpo-dev groff fonts-mathjax-extras fonts-stix libjs-mathjax-doc
  libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
  www-browser libmail-box-perl python3-tk python3-venv python-coverage-doc
  python3-examples fonts-linuxlibertine | ttf-linux-libertine
  texlive-lang-french texlive-latex-base texlive-latex-recommended
  python-h5py-doc python-jinja2-doc python-nose2-doc gfortran python-numpy-doc
  python3-pytest python-pygments-doc ttf-bitstream-vera python-pyparsing-doc
  python3-cryptography python3-openssl python3-socks python-scipy-doc
  python-setuptools-doc python3-stemmer dvipng fonts-freefont-otf
  imagemagick-6.q16 latexmk tex-gyre texlive-fonts-recommended
  texlive-latex-extra texlive-plain-generic python3-brotli python3.10-venv
  binfmt-support python3.9-venv python3.9-doc sgml-base-doc
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl javascript-common publicsuffix
  libltdl-dev libmail-sendmail-perl libpaper-utils python3-pil
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism
  docutils-common docutils-doc dwz file fonts-font-awesome fonts-lato
  fonts-mathjax gcc-12-base gettext gettext-base groff-base intltool-debian
  libaec0 libarchive-zip-perl libblas3 libbrotli1 libcurl4 libdebhelper-perl
  libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
  libgfortran5 libhdf5-103-1 libhdf5-hl-100 libicu67 libjs-jquery
  libjs-mathjax libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblzf1
  libmagic-mgc libmagic1 libmpdec3 libnghttp2-14 libpipeline1 libpsl5
  libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10
  libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.9
  libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib librtmp1
  libsigsegv2 libssh2-1 libsub-override-perl libsz2 libtool libuchardet0
  libunicode-escape-perl libunicode-string-perl libxml2 m4 man-db media-types
  openssl po-debconf python-babel-localedata python-requests-doc python3
  python3-alabaster python3-all python3-all-dev python3-babel python3-certifi
  python3-chardet python3-charset-normalizer python3-coverage
  python3-decorator python3-dev python3-distutils python3-doc python3-docutils
  python3-h5py python3-h5py-serial python3-idna python3-imagesize
  python3-importlib-metadata python3-jinja2 python3-lib2to3 python3-mappy
  python3-markupsafe python3-minimal python3-more-itertools python3-nose2
  python3-numpy python3-packaging python3-pkg-resources python3-pygments
  python3-pyparsing python3-requests python3-roman python3-scipy
  python3-setuptools python3-six python3-snowballstemmer python3-sphinx
  python3-sphinx-argparse python3-sphinx-rtd-theme python3-tqdm python3-tz
  python3-urllib3 python3-zipp python3.10 python3.10-dev python3.10-doc
  python3.10-minimal python3.9 python3.9-dev python3.9-minimal
  sbuild-build-depends-tombo-dummy sgml-base sphinx-common sphinx-doc
  sphinx-rtd-theme-common xml-core zlib1g-dev
The following packages will be upgraded:
  libsmartcols1 zlib1g
2 upgraded, 136 newly installed, 0 to remove and 51 not upgraded.
Need to get 101 MB of archives.
After this operation, 473 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-z0SRYv/apt_archive ./ sbuild-build-depends-tombo-dummy 0.invalid.0 [956 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf fonts-lato all 2.0-2.1 [2696 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.4-1 [811 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.8-1 [84.1 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf zlib1g armhf 1:1.2.11.dfsg-4 [84.2 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.4-1 [1633 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.4-1 [38.6 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf media-types all 7.1.0 [33.2 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.4-1 [1625 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.4-1 [536 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.4-1 [21.7 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.4-1 [38.1 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.12-1+rpi1 [794 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.12-1+rpi1 [1595 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf sgml-base all 1.30 [15.1 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38-4 [149 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38-4 [137 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-1 [1362 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 1.1.1n-1 [816 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-6 [171 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-6 [510 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf cython3 armhf 0.29.28-3+rpi1 [1456 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.7.1 [195 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-3 [526 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.13+dfsg-1 [593 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-6 [1214 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.7.1 [1071 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.12-1 [79.9 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.12-1 [146 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220403 [113 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf docutils-common all 0.17.1+dfsg-2 [127 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf docutils-doc all 0.17.1+dfsg-2 [1067 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2210 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12-20220319-1+rpi1 [207 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-1 [108 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3 [161 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.82.0-2 [317 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.8-1 [137 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12-20220319-1+rpi1 [238 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.7+repack-4+rpi1 [1246 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.7+repack-4+rpi1 [82.1 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [316 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5667 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.2~dfsg-2 [116 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.5.0-3 [142 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-1 [1587 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-10 [24.2 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf liblzf1 armhf 3.6-3 [9268 B]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10 armhf 3.10.4-1 [1454 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4 [183 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-dev armhf 3.10.4-1 [2984 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.10.4-1 [22.0 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.12-1+rpi1 [1611 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.12-1+rpi1 [1419 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.12-1+rpi1 [3013 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libpython3-all-dev armhf 3.10.4-1 [1072 B]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libunicode-string-perl armhf 2.10-1+b6 [98.7 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libunicode-escape-perl all 0.0.2-4.1 [12.9 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf python-requests-doc all 2.27.1+dfsg-1 [188 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf python3-alabaster all 0.7.12-1 [20.8 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf python3.9 armhf 3.9.12-1+rpi1 [492 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.10.4-1 [1064 B]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf python3.10-dev armhf 3.10.4-1 [508 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.10.4-1 [25.4 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.12-1+rpi1 [501 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf python3-all-dev armhf 3.10.4-1 [1076 B]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2022.1-1 [34.8 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf python3-babel all 2.8.0+dfsg.1-7 [100 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf python3-certifi all 2020.6.20-1 [151 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf python3-chardet all 4.0.0-1 [99.0 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf python3-charset-normalizer all 2.0.6-2 [30.6 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf python3-coverage armhf 6.2+dfsg1-2+b1 [152 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf python3.10-doc all 3.10.4-1 [11.6 MB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf python3-doc all 3.10.4-1 [21.9 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf python3-roman all 3.3-1 [10.7 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf python3-docutils all 0.17.1+dfsg-2 [393 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-1+b1 [5157 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py-serial armhf 3.6.0-2+b1 [850 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf python3-h5py all 3.6.0-2 [13.1 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf python3-idna all 3.3-1 [39.4 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf python3-imagesize all 1.3.0-1 [6360 B]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf python3-zipp all 1.0.0-3 [6060 B]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf python3-importlib-metadata all 4.6.4-1 [22.5 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf python3-markupsafe armhf 2.0.1-2+b1 [13.5 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf python3-jinja2 all 3.0.3-1 [121 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf python3-mappy armhf 2.24+dfsg-2 [160 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-3 [17.5 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf python3-nose2 all 0.9.2-1 [94.1 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf python3-pyparsing all 3.0.7-2 [140 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 21.3-1 [34.1 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf python3-pygments all 2.11.2+dfsg-2 [744 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf python3-urllib3 all 1.26.9-1 [116 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf python3-requests all 2.27.1+dfsg-1 [71.9 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.7.3-2+b1 [13.0 MB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 59.6.0-1.2 [401 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf python3-snowballstemmer all 2.2.0-1 [58.5 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf sphinx-common all 4.5.0-3 [638 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf python3-sphinx all 4.5.0-3 [540 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf sphinx-rtd-theme-common all 1.0.0+dfsg-1 [996 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf python3-sphinx-argparse all 0.3.1-1 [37.5 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf python3-sphinx-rtd-theme all 1.0.0+dfsg-1 [26.5 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf python3-tqdm all 4.64.0-2 [96.0 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf sphinx-doc all 4.5.0-3 [2266 kB]
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
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Setting up python3-all (3.10.4-1) ...
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Setting up python3-mappy (2.24+dfsg-2) ...
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Setting up python3-jinja2 (3.0.3-1) ...
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Setting up python3-chardet (4.0.0-1) ...
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Setting up python3-requests (2.27.1+dfsg-1) ...
Setting up python3-numpy (1:1.21.5-1+b1) ...
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Setting up python3-scipy (1.7.3-2+b1) ...
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Setting up python3-h5py-serial (3.6.0-2+b1) ...
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Processing triggers for libc-bin (2.33-7+rpi1) ...
Processing triggers for sgml-base (1.30) ...
Setting up docutils-common (0.17.1+dfsg-2) ...
Processing triggers for sgml-base (1.30) ...
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Setting up python3-sphinx-rtd-theme (1.0.0+dfsg-1) ...
Setting up python3-sphinx-argparse (0.3.1-1) ...
Setting up sbuild-build-depends-tombo-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.38-3+rpi1 dpkg-dev_1.21.2+rpi1 g++-11_11.2.0-16+rpi1 gcc-11_11.2.0-16+rpi1 libc6-dev_2.33-7+rpi1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 linux-libc-dev_5.16.14-1+rpi1
Package versions: adduser_3.120 apt_2.4.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6 binutils_2.38-3+rpi1 binutils-arm-linux-gnueabihf_2.38-3+rpi1 binutils-common_2.38-3+rpi1 bsdextrautils_2.38-4 bsdutils_1:2.37.3-1 build-essential_12.9 bzip2_1.0.8-5 ca-certificates_20211016 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-16+rpi1 cython3_0.29.28-3+rpi1 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.7.1 debianutils_5.7-0.1 dh-autoreconf_20 dh-python_5.20220403 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-3+b1 docutils-common_0.17.1+dfsg-2 docutils-doc_0.17.1+dfsg-2 dpkg_1.21.2+rpi1 dpkg-dev_1.21.2+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.28-1 file_1:5.41-2 findutils_4.9.0-2 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1 fonts-lato_2.0-2.1 fonts-mathjax_2.7.9+dfsg-1 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-16+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-16+rpi1 gcc-11-base_11.2.0-16+rpi1 gcc-12-base_12-20220319-1+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-6 gettext-base_0.21-6 gnupg_2.2.27-3 gnupg-l10n_2.2.27-3 gnupg-utils_2.2.27-3+b1 gpg_2.2.27-3+b1 gpg-agent_2.2.27-3+b1 gpg-wks-client_2.2.27-3+b1 gpg-wks-server_2.2.27-3+b1 gpgconf_2.2.27-3+b1 gpgsm_2.2.27-3+b1 gpgv_2.2.27-3+b1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.62 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libaec0_1.0.6-1 libapt-pkg6.0_2.4.3 libarchive-zip-perl_1.68-1 libasan6_11.2.0-16+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-16+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38-3+rpi1 libblas3_3.10.1-1 libblkid1_2.37.3-1 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-5 libc-bin_2.33-7+rpi1 libc-dev-bin_2.33-7+rpi1 libc6_2.33-7+rpi1 libc6-dev_2.33-7+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-16+rpi1 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.38-3+rpi1 libctf0_2.38-3+rpi1 libcurl4_7.82.0-2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.7.1 libdpkg-perl_1.21.2+rpi1 libelf1_0.186-1 libexpat1_2.4.8-1 libexpat1-dev_2.4.8-1 libext2fs2_1.46.5-2 libfakeroot_1.28-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.2.0-16+rpi1 libgcc-s1_11.2.0-16+rpi1 libgcrypt20_1.9.4-5 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran5_12-20220319-1+rpi1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.3-4 libgomp1_11.2.0-16+rpi1 libgpg-error0_1.43-3 libgssapi-krb5-2_1.19.2-2+b1 libhdf5-103-1_1.10.7+repack-4+rpi1 libhdf5-hl-100_1.10.7+repack-4+rpi1 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libjs-jquery_3.6.0+dfsg+~3.5.13-1 libjs-mathjax_2.7.9+dfsg-1 libjs-sphinxdoc_4.5.0-3 libjs-underscore_1.13.2~dfsg-2 libk5crypto3_1.19.2-2+b1 libkeyutils1_1.6.1-3+rpi1 libkrb5-3_1.19.2-2+b1 libkrb5support0_1.19.2-2+b1 libksba8_1.6.0-2 liblapack3_3.10.1-1 liblbfgsb0_3.0+dfsg.3-10 libldap-2.5-0_2.5.11+dfsg-1+rpi1 liblz4-1_1.9.3-2 liblzf1_3.6-3 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmount1_2.37.3-1 libmpc3_1.2.1-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.3-2 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.34_5.34.0-3 libpipeline1_1.5.5-1 libpsl5_0.21.0-1.2 libpython3-all-dev_3.10.4-1 libpython3-dev_3.10.4-1 libpython3-stdlib_3.10.4-1 libpython3.10_3.10.4-1 libpython3.10-dev_3.10.4-1 libpython3.10-minimal_3.10.4-1 libpython3.10-stdlib_3.10.4-1 libpython3.9_3.9.12-1+rpi1 libpython3.9-dev_3.9.12-1+rpi1 libpython3.9-minimal_3.9.12-1+rpi1 libpython3.9-stdlib_3.9.12-1+rpi1 libreadline8_8.1.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-2+b1 libsasl2-modules-db_2.1.28+dfsg-2+b1 libseccomp2_2.5.3-2+rpi1 libselinux1_3.3-1 libsemanage-common_3.3-1 libsemanage2_3.3-1 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.14-1 libsmartcols1_2.38-4 libsqlite3-0_3.38.1-1 libss2_1.46.5-2 libssh2-1_1.10.0-3 libssl1.1_1.1.1n-1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 libsub-override-perl_0.09-2 libsystemd0_250.4-1+rpi1 libsz2_1.0.6-1 libtasn1-6_4.18.0-4 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.7-3 libubsan1_11.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_250.4-1+rpi1 libunicode-escape-perl_0.0.2-4.1 libunicode-string-perl_2.10-1+b6 libunistring2_1.0-1 libuuid1_2.37.3-1 libxml2_2.9.13+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.4.9+dfsg-1+rpi1 linux-libc-dev_5.16.14-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.2-1 mawk_1.3.4.20200120-3 media-types_7.1.0 mount_2.37.3-1 ncurses-base_6.3-2 ncurses-bin_6.3-2 netbase_6.3 openssl_1.1.1n-1 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-3 perl-base_5.34.0-3 perl-modules-5.34_5.34.0-3 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python-babel-localedata_2.8.0+dfsg.1-7 python-requests-doc_2.27.1+dfsg-1 python3_3.10.4-1 python3-alabaster_0.7.12-1 python3-all_3.10.4-1 python3-all-dev_3.10.4-1 python3-babel_2.8.0+dfsg.1-7 python3-certifi_2020.6.20-1 python3-chardet_4.0.0-1 python3-charset-normalizer_2.0.6-2 python3-coverage_6.2+dfsg1-2+b1 python3-decorator_4.4.2-2 python3-dev_3.10.4-1 python3-distutils_3.9.12-1 python3-doc_3.10.4-1 python3-docutils_0.17.1+dfsg-2 python3-h5py_3.6.0-2 python3-h5py-serial_3.6.0-2+b1 python3-idna_3.3-1 python3-imagesize_1.3.0-1 python3-importlib-metadata_4.6.4-1 python3-jinja2_3.0.3-1 python3-lib2to3_3.9.12-1 python3-mappy_2.24+dfsg-2 python3-markupsafe_2.0.1-2+b1 python3-minimal_3.10.4-1 python3-more-itertools_8.10.0-2 python3-nose2_0.9.2-1 python3-numpy_1:1.21.5-1+b1 python3-packaging_21.3-1 python3-pkg-resources_59.6.0-1.2 python3-pygments_2.11.2+dfsg-2 python3-pyparsing_3.0.7-2 python3-requests_2.27.1+dfsg-1 python3-roman_3.3-1 python3-scipy_1.7.3-2+b1 python3-setuptools_59.6.0-1.2 python3-six_1.16.0-3 python3-snowballstemmer_2.2.0-1 python3-sphinx_4.5.0-3 python3-sphinx-argparse_0.3.1-1 python3-sphinx-rtd-theme_1.0.0+dfsg-1 python3-tqdm_4.64.0-2 python3-tz_2022.1-1 python3-urllib3_1.26.9-1 python3-zipp_1.0.0-3 python3.10_3.10.4-1 python3.10-dev_3.10.4-1 python3.10-doc_3.10.4-1 python3.10-minimal_3.10.4-1 python3.9_3.9.12-1+rpi1 python3.9-dev_3.9.12-1+rpi1 python3.9-minimal_3.9.12-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-tombo-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sphinx-common_4.5.0-3 sphinx-doc_4.5.0-3 sphinx-rtd-theme-common_1.0.0+dfsg-1 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.3-1 xml-core_0.18+nmu1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-4 zlib1g-dev_1:1.2.11.dfsg-4

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.ZSqLNCs0/trustedkeys.kbx': General error
gpgv: Signature made Fri Oct  8 14:12:17 2021 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./tombo_1.5.1-3.dsc
dpkg-source: info: extracting tombo in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking tombo_1.5.1.orig.tar.gz
dpkg-source: info: unpacking tombo_1.5.1-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying no_future.patch
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying mathjax.patch

Check disc space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 1.5.1-3+b1

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-485c641d-4b14-4cd7-86ad-dd46b4cf2545
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package tombo
dpkg-buildpackage: info: source version 1.5.1-3+b1
dpkg-buildpackage: info: source distribution bookworm-staging
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3,sphinxdoc --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:239: python3.9 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
I: pybuild base:239: python3.10 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.10' does not exist -- can't clean it
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-arch
dh binary-arch --with python3,sphinxdoc --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:239: python3.9 setup.py config 
running config
I: pybuild base:239: python3.10 setup.py config 
running config
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
I: pybuild base:239: /usr/bin/python3.9 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_default_parameters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_event_resquiggle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_filter_reads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_option_parsers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_plot_commands.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_preprocess.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_text_output_commands.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/resquiggle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/tombo_helper.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/tombo_stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
running egg_info
creating ont_tombo.egg-info
writing ont_tombo.egg-info/PKG-INFO
writing dependency_links to ont_tombo.egg-info/dependency_links.txt
writing entry points to ont_tombo.egg-info/entry_points.txt
writing requirements to ont_tombo.egg-info/requires.txt
writing top-level names to ont_tombo.egg-info/top_level.txt
writing manifest file 'ont_tombo.egg-info/SOURCES.txt'
reading manifest file 'ont_tombo.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*' under directory 'cython'
adding license file 'LICENSE.md'
writing manifest file 'ont_tombo.egg-info/SOURCES.txt'
copying tombo/_c_dynamic_programming.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_c_helper.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/debugDP.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/debugFit.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/debugRawDP.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotGroupComp.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotKmerDist.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotModelComp.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotMotifStats.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotMultiReadCorr.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotPerReadStats.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotROC.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotROCPerRead.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotReadCorr.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotSigMDS.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotSingleRead.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotSingleRun.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.5mC.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.6mA.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.CpG.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.dam.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.dcm.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.RNA.180mV.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.RNA.200mV.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.RNA.5mC.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
running build_ext
cythoning tombo/_c_dynamic_programming.pyx to tombo/_c_dynamic_programming.cpp
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/tombo/_c_dynamic_programming.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
cythoning tombo/_c_helper.pyx to tombo/_c_helper.cpp
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/tombo/_c_helper.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
building 'tombo._c_dynamic_programming' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/tombo
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c tombo/_c_dynamic_programming.cpp -o build/temp.linux-armhf-3.9/tombo/_c_dynamic_programming.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from tombo/_c_dynamic_programming.cpp:701:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
tombo/_c_dynamic_programming.cpp: In function 'PyObject* __pyx_pf_5tombo_22_c_dynamic_programming_2c_reg_z_scores(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, PyObject*)':
tombo/_c_dynamic_programming.cpp:3711:36: warning: '__pyx_v_np_max_half_z_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
 3711 |     __pyx_t_20 = PyFloat_FromDouble(__pyx_v_np_max_half_z_score); if (unlikely(!__pyx_t_20)) __PYX_ERR(0, 93, __pyx_L1_error)
      |                  ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/tombo/_c_dynamic_programming.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_dynamic_programming.cpython-39-arm-linux-gnueabihf.so
building 'tombo._c_helper' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c tombo/_c_helper.cpp -o build/temp.linux-armhf-3.9/tombo/_c_helper.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from tombo/_c_helper.cpp:701:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/tombo/_c_helper.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_helper.cpython-39-arm-linux-gnueabihf.so
I: pybuild base:239: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo
copying tombo/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo
copying tombo/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo
copying tombo/_default_parameters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo
copying tombo/_event_resquiggle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo
copying tombo/_filter_reads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo
copying tombo/_option_parsers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo
copying tombo/_plot_commands.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo
copying tombo/_preprocess.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo
copying tombo/_text_output_commands.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo
copying tombo/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo
copying tombo/resquiggle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo
copying tombo/tombo_helper.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo
copying tombo/tombo_stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo
running egg_info
writing ont_tombo.egg-info/PKG-INFO
writing dependency_links to ont_tombo.egg-info/dependency_links.txt
writing entry points to ont_tombo.egg-info/entry_points.txt
writing requirements to ont_tombo.egg-info/requires.txt
writing top-level names to ont_tombo.egg-info/top_level.txt
reading manifest file 'ont_tombo.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*' under directory 'cython'
adding license file 'LICENSE.md'
writing manifest file 'ont_tombo.egg-info/SOURCES.txt'
copying tombo/_c_dynamic_programming.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo
copying tombo/_c_helper.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts
copying tombo/R_scripts/debugDP.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts
copying tombo/R_scripts/debugFit.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts
copying tombo/R_scripts/debugRawDP.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts
copying tombo/R_scripts/plotGroupComp.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts
copying tombo/R_scripts/plotKmerDist.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts
copying tombo/R_scripts/plotModelComp.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts
copying tombo/R_scripts/plotMotifStats.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts
copying tombo/R_scripts/plotMultiReadCorr.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts
copying tombo/R_scripts/plotPerReadStats.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts
copying tombo/R_scripts/plotROC.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts
copying tombo/R_scripts/plotROCPerRead.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts
copying tombo/R_scripts/plotReadCorr.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts
copying tombo/R_scripts/plotSigMDS.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts
copying tombo/R_scripts/plotSingleRead.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts
copying tombo/R_scripts/plotSingleRun.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.5mC.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.6mA.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.CpG.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.dam.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.dcm.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models
copying tombo/tombo_models/tombo.RNA.180mV.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models
copying tombo/tombo_models/tombo.RNA.200mV.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models
copying tombo/tombo_models/tombo.RNA.5mC.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models
running build_ext
skipping 'tombo/_c_dynamic_programming.cpp' Cython extension (up-to-date)
skipping 'tombo/_c_helper.cpp' Cython extension (up-to-date)
building 'tombo._c_dynamic_programming' extension
creating build/temp.linux-armhf-3.10
creating build/temp.linux-armhf-3.10/tombo
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c tombo/_c_dynamic_programming.cpp -o build/temp.linux-armhf-3.10/tombo/_c_dynamic_programming.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from tombo/_c_dynamic_programming.cpp:701:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
tombo/_c_dynamic_programming.cpp: In function 'PyObject* __pyx_pf_5tombo_22_c_dynamic_programming_2c_reg_z_scores(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, PyObject*)':
tombo/_c_dynamic_programming.cpp:3711:36: warning: '__pyx_v_np_max_half_z_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
 3711 |     __pyx_t_20 = PyFloat_FromDouble(__pyx_v_np_max_half_z_score); if (unlikely(!__pyx_t_20)) __PYX_ERR(0, 93, __pyx_L1_error)
      |                  ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/tombo/_c_dynamic_programming.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/_c_dynamic_programming.cpython-310-arm-linux-gnueabihf.so
building 'tombo._c_helper' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c tombo/_c_helper.cpp -o build/temp.linux-armhf-3.10/tombo/_c_helper.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from tombo/_c_helper.cpp:701:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.10/tombo/_c_helper.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/_c_helper.cpython-310-arm-linux-gnueabihf.so
sphinx-build -N -bhtml docs docs/build
Running Sphinx v4.5.0
Creating file ./tombo.rst.
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 11 source files that are out of date
updating environment: [new config] 11 added, 0 changed, 0 removed
reading sources... [  9%] examples
reading sources... [ 18%] filtering
reading sources... [ 27%] index
reading sources... [ 36%] model_training
reading sources... [ 45%] modified_base_detection
reading sources... [ 54%] plotting
reading sources... [ 63%] resquiggle
reading sources... [ 72%] rna
reading sources... [ 81%] text_output
reading sources... [ 90%] tombo
reading sources... [100%] tutorials

WARNING: autodoc: failed to import module 'tombo'; the following exception was raised:
No module named 'tombo'
WARNING: autodoc: failed to import module 'resquiggle' from module 'tombo'; the following exception was raised:
No module named 'tombo'
WARNING: autodoc: failed to import module 'tombo_helper' from module 'tombo'; the following exception was raised:
No module named 'tombo'
WARNING: autodoc: failed to import module 'tombo_stats' from module 'tombo'; the following exception was raised:
No module named 'tombo'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [  9%] examples
writing output... [ 18%] filtering
writing output... [ 27%] index
writing output... [ 36%] model_training
writing output... [ 45%] modified_base_detection
writing output... [ 54%] plotting
writing output... [ 63%] resquiggle
writing output... [ 72%] rna
writing output... [ 81%] text_output
writing output... [ 90%] tombo
writing output... [100%] tutorials

generating indices... genindex done
writing additional pages... search done
copying images... [  4%] _images/testing_method_comparison.png
copying images... [  8%] _images/alt_density_est.png
copying images... [ 13%] _images/old_correction_plot.png
copying images... [ 17%] _images/outlier_robust_llr.gif
copying images... [ 21%] _images/dampened_fraction.png
copying images... [ 26%] _images/single_samp.png
copying images... [ 30%] _images/sample_comp.png
copying images... [ 34%] _images/model_comp.png
copying images... [ 39%] _images/alt_model_comp.png
copying images... [ 43%] _images/boxplot.png
copying images... [ 47%] _images/quantile.png
copying images... [ 52%] _images/density.png
copying images... [ 56%] _images/pre_read_5mC.png
copying images... [ 60%] _images/per_read_do_novo.png
copying images... [ 65%] _images/stat_dist.png
copying images... [ 69%] _images/kmer_levels.png
copying images... [ 73%] _images/roc.png
copying images... [ 78%] _images/per_read_stat_dist.png
copying images... [ 82%] _images/begin_half_z_scores.png
copying images... [ 86%] _images/begin_forward_pass.png
copying images... [ 91%] _images/adaptive_half_z_scores.png
copying images... [ 95%] _images/adaptive_forward_pass.png
copying images... [100%] _images/stat_dist_null.png

copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 4 warnings.

The HTML pages are in docs/build.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:239: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build; python3.9 -m nose2 -v 

----------------------------------------------------------------------
Ran 0 tests in 0.000s

OK
I: pybuild base:239: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build; python3.10 -m nose2 -v 

----------------------------------------------------------------------
Ran 0 tests in 0.000s

OK
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:239: /usr/bin/python3.9 setup.py install --root /<<PKGBUILDDIR>>/debian/tmp 
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
running build
running build_py
running egg_info
writing ont_tombo.egg-info/PKG-INFO
writing dependency_links to ont_tombo.egg-info/dependency_links.txt
writing entry points to ont_tombo.egg-info/entry_points.txt
writing requirements to ont_tombo.egg-info/requires.txt
writing top-level names to ont_tombo.egg-info/top_level.txt
reading manifest file 'ont_tombo.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*' under directory 'cython'
adding license file 'LICENSE.md'
writing manifest file 'ont_tombo.egg-info/SOURCES.txt'
running build_ext
skipping 'tombo/_c_dynamic_programming.cpp' Cython extension (up-to-date)
skipping 'tombo/_c_helper.cpp' Cython extension (up-to-date)
running install_lib
creating /<<PKGBUILDDIR>>/debian/tmp/usr
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/__init__.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/__main__.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_default_parameters.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_event_resquiggle.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_filter_reads.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_option_parsers.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_plot_commands.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_preprocess.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_text_output_commands.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_version.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/resquiggle.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_helper.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_stats.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_dynamic_programming.pyx -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_helper.pyx -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/debugDP.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/debugFit.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/debugRawDP.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotGroupComp.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotKmerDist.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotModelComp.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotMotifStats.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotMultiReadCorr.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotPerReadStats.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotROC.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotROCPerRead.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotReadCorr.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotSigMDS.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotSingleRead.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotSingleRun.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.5mC.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.6mA.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.CpG.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.dam.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.dcm.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.RNA.180mV.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.RNA.200mV.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.RNA.5mC.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_dynamic_programming.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_helper.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/__main__.py to __main__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_default_parameters.py to _default_parameters.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_event_resquiggle.py to _event_resquiggle.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_filter_reads.py to _filter_reads.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_option_parsers.py to _option_parsers.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_plot_commands.py to _plot_commands.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_preprocess.py to _preprocess.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_text_output_commands.py to _text_output_commands.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_version.py to _version.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/resquiggle.py to resquiggle.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_helper.py to tombo_helper.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_stats.py to tombo_stats.cpython-39.pyc
running install_egg_info
Copying ont_tombo.egg-info to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/ont_tombo-1.5.1.egg-info
Skipping SOURCES.txt
running install_scripts
Installing tombo script to /<<PKGBUILDDIR>>/debian/tmp/usr/bin
I: pybuild base:239: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/tmp 
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
running build
running build_py
running egg_info
writing ont_tombo.egg-info/PKG-INFO
writing dependency_links to ont_tombo.egg-info/dependency_links.txt
writing entry points to ont_tombo.egg-info/entry_points.txt
writing requirements to ont_tombo.egg-info/requires.txt
writing top-level names to ont_tombo.egg-info/top_level.txt
reading manifest file 'ont_tombo.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*' under directory 'cython'
adding license file 'LICENSE.md'
writing manifest file 'ont_tombo.egg-info/SOURCES.txt'
running build_ext
skipping 'tombo/_c_dynamic_programming.cpp' Cython extension (up-to-date)
skipping 'tombo/_c_helper.cpp' Cython extension (up-to-date)
running install_lib
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/__init__.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/__main__.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/_default_parameters.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/_event_resquiggle.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/_filter_reads.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/_option_parsers.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/_plot_commands.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/_preprocess.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/_text_output_commands.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/_version.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/resquiggle.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_helper.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_stats.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/_c_dynamic_programming.pyx -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/_c_helper.pyx -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts/debugDP.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts/debugFit.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts/debugRawDP.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts/plotGroupComp.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts/plotKmerDist.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts/plotModelComp.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts/plotMotifStats.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts/plotMultiReadCorr.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts/plotPerReadStats.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts/plotROC.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts/plotROCPerRead.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts/plotReadCorr.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts/plotSigMDS.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts/plotSingleRead.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/R_scripts/plotSingleRun.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/R_scripts
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models/tombo.DNA.5mC.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models/tombo.DNA.6mA.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models/tombo.DNA.CpG.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models/tombo.DNA.dam.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models/tombo.DNA.dcm.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models/tombo.DNA.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models/tombo.RNA.180mV.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models/tombo.RNA.200mV.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/tombo_models/tombo.RNA.5mC.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/_c_dynamic_programming.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10/build/tombo/_c_helper.cpython-310-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/__init__.py to __init__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/__main__.py to __main__.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/_default_parameters.py to _default_parameters.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/_event_resquiggle.py to _event_resquiggle.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/_filter_reads.py to _filter_reads.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/_option_parsers.py to _option_parsers.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/_plot_commands.py to _plot_commands.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/_preprocess.py to _preprocess.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/_text_output_commands.py to _text_output_commands.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/_version.py to _version.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/resquiggle.py to resquiggle.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/tombo_helper.py to tombo_helper.cpython-310.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/tombo/tombo_stats.py to tombo_stats.cpython-310.pyc
running install_egg_info
Copying ont_tombo.egg-info to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.10/dist-packages/ont_tombo-1.5.1.egg-info
Skipping SOURCES.txt
running install_scripts
Installing tombo script to /<<PKGBUILDDIR>>/debian/tmp/usr/bin
   dh_install -a -O--buildsystem=pybuild
   dh_installdocs -a -O--buildsystem=pybuild
   dh_sphinxdoc -a -O--buildsystem=pybuild
dh_sphinxdoc: warning: Sphinx documentation not found
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_installman -a -O--buildsystem=pybuild
   dh_python3 -a -O--buildsystem=pybuild
I: dh_python3 tools:114: replacing shebang in debian/tombo/usr/share/tombo/scripts/dump_per_read_statistics.py
   dh_installsystemduser -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
find debian -name "*.model" -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_missing -a -O--buildsystem=pybuild
   dh_dwz -a -O--buildsystem=pybuild
   dh_strip -a -O--buildsystem=pybuild
   dh_makeshlibs -a -O--buildsystem=pybuild
   dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tombo/usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.cpython-39-arm-linux-gnueabihf.so debian/tombo/usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.cpython-310-arm-linux-gnueabihf.so debian/tombo/usr/lib/python3/dist-packages/tombo/_c_helper.cpython-310-arm-linux-gnueabihf.so debian/tombo/usr/lib/python3/dist-packages/tombo/_c_helper.cpython-39-arm-linux-gnueabihf.so were not linked against libpthread.so.0 (they use none of the library's symbols)
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package tombo: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package tombo: substitution variable ${python3:Versions} unused, but is defined
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'tombo-dbgsym' in '../tombo-dbgsym_1.5.1-3+b1_armhf.deb'.
dpkg-deb: building package 'tombo' in '../tombo_1.5.1-3+b1_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../tombo_1.5.1-3+b1_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../tombo_1.5.1-3+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-04-23T15:17:11Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


tombo_1.5.1-3+b1_armhf.changes:
-------------------------------

Format: 1.8
Date: Thu, 07 Oct 2021 10:23:35 +0200
Source: tombo (1.5.1-3)
Binary: tombo tombo-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 1.5.1-3+b1
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
 tombo      - identification of modified nucleotides from raw nanopore sequenci
Changes:
 tombo (1.5.1-3+b1) bookworm-staging; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for armhf; no source changes.
   * rebuild due to debcheck failure
Checksums-Sha1:
 a4f3d5fabb5409045efb3a9cb70970d120de90b2 671468 tombo-dbgsym_1.5.1-3+b1_armhf.deb
 be62d665c83c95d0d73a584004da9275f738a2ef 8960 tombo_1.5.1-3+b1_armhf.buildinfo
 95b0f1fc58e76981bd5a8eaaa53f41edf5fc16db 433432 tombo_1.5.1-3+b1_armhf.deb
Checksums-Sha256:
 e1ed152045e13c5fcbc57731ec7154892a2ffc7dfa423d59b0ea4bce8249b518 671468 tombo-dbgsym_1.5.1-3+b1_armhf.deb
 59c1dfffb0381154dde155786085768796d746f69ddc9f4195afb05caed7e56e 8960 tombo_1.5.1-3+b1_armhf.buildinfo
 f672529ca17e830440710e782286ba95d9bf74e55bdecfb9936fc7626854ee42 433432 tombo_1.5.1-3+b1_armhf.deb
Files:
 284f96d261d5ba14214fab7f507f85ec 671468 debug optional tombo-dbgsym_1.5.1-3+b1_armhf.deb
 0c2a1d677ab14ad72eff90bff1f24606 8960 science optional tombo_1.5.1-3+b1_armhf.buildinfo
 cf8796ae2ea252233cb6d5526b4b4377 433432 science optional tombo_1.5.1-3+b1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


tombo-dbgsym_1.5.1-3+b1_armhf.deb
---------------------------------

 new Debian package, version 2.0.
 size 671468 bytes: control archive=748 bytes.
     501 bytes,    12 lines      control              
     509 bytes,     5 lines      md5sums              
 Package: tombo-dbgsym
 Source: tombo (1.5.1-3)
 Version: 1.5.1-3+b1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 809
 Depends: tombo (= 1.5.1-3+b1)
 Section: debug
 Priority: optional
 Description: debug symbols for tombo
 Build-Ids: 2ad852df1045388e6a16ca7daaf242c024fd87b7 7790653eb1e0aeac82699f5d989e7bb66aaaf6c4 bf34319cecb78dcafa76eabc75d798637409201a fd4eaa9c328ff2768d014864b7534e6e6e1193d7

drwxr-xr-x root/root         0 2021-10-07 08:23 ./
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/lib/
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/lib/debug/
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/lib/debug/.build-id/2a/
-rw-r--r-- root/root    170128 2021-10-07 08:23 ./usr/lib/debug/.build-id/2a/d852df1045388e6a16ca7daaf242c024fd87b7.debug
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/lib/debug/.build-id/77/
-rw-r--r-- root/root    218608 2021-10-07 08:23 ./usr/lib/debug/.build-id/77/90653eb1e0aeac82699f5d989e7bb66aaaf6c4.debug
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/lib/debug/.build-id/bf/
-rw-r--r-- root/root    170384 2021-10-07 08:23 ./usr/lib/debug/.build-id/bf/34319cecb78dcafa76eabc75d798637409201a.debug
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/lib/debug/.build-id/fd/
-rw-r--r-- root/root    218396 2021-10-07 08:23 ./usr/lib/debug/.build-id/fd/4eaa9c328ff2768d014864b7534e6e6e1193d7.debug
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root     32560 2021-10-07 08:23 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/tombo.debug
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/share/
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/share/doc/
lrwxrwxrwx root/root         0 2021-10-07 08:23 ./usr/share/doc/tombo-dbgsym -> tombo


tombo_1.5.1-3+b1_armhf.deb
--------------------------

 new Debian package, version 2.0.
 size 433432 bytes: control archive=2936 bytes.
     821 bytes,    15 lines      control              
    5775 bytes,    63 lines      md5sums              
     458 bytes,    19 lines   *  postinst             #!/bin/sh
     401 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: tombo
 Source: tombo (1.5.1-3)
 Version: 1.5.1-3+b1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1603
 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), cython3, python3 (<< 3.11), python3 (>= 3.9~), python3-h5py-serial, python3-mappy, python3-numpy, python3-pkg-resources, python3-scipy, python3-tqdm, python3:any, python3-h5py
 Recommends: python3-pyfaidx, python3-rpy2
 Section: science
 Priority: optional
 Homepage: https://github.com/nanoporetech/tombo
 Description: identification of modified nucleotides from raw nanopore sequencing data
  Tombo is a suite of tools primarily for the identification of modified
  nucleotides from nanopore sequencing data. Tombo also provides tools for
  the analysis and visualization of raw nanopore signal.

drwxr-xr-x root/root         0 2021-10-07 08:23 ./
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/bin/
-rwxr-xr-x root/root       960 2021-10-07 08:23 ./usr/bin/tombo
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/lib/
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/lib/python3/
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/
-rw-r--r-- root/root      6834 2021-10-07 08:23 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2021-10-07 08:23 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/dependency_links.txt
-rw-r--r-- root/root        47 2021-10-07 08:23 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/entry_points.txt
-rw-r--r-- root/root        28 2021-10-07 08:23 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/requires.txt
-rw-r--r-- root/root         6 2021-10-07 08:23 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/top_level.txt
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/lib/python3/dist-packages/tombo/
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/lib/python3/dist-packages/tombo/R_scripts/
-rw-r--r-- root/root      1254 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/debugDP.R
-rw-r--r-- root/root      1013 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/debugFit.R
-rw-r--r-- root/root      1888 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/debugRawDP.R
-rw-r--r-- root/root      5508 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotGroupComp.R
-rw-r--r-- root/root      5177 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotKmerDist.R
-rw-r--r-- root/root     12234 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotModelComp.R
-rw-r--r-- root/root      6939 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotMotifStats.R
-rw-r--r-- root/root      2942 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotMultiReadCorr.R
-rw-r--r-- root/root      3862 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotPerReadStats.R
-rw-r--r-- root/root       382 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotROC.R
-rw-r--r-- root/root      1072 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotROCPerRead.R
-rw-r--r-- root/root      1757 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotReadCorr.R
-rw-r--r-- root/root       369 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotSigMDS.R
-rw-r--r-- root/root      1499 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotSingleRead.R
-rw-r--r-- root/root      3424 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotSingleRun.R
-rw-r--r-- root/root      3547 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/__init__.py
-rw-r--r-- root/root     13107 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/__main__.py
-rw-r--r-- root/root    104180 2021-10-07 08:23 ./usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.cpython-310-arm-linux-gnueabihf.so
-rw-r--r-- root/root    104180 2021-10-07 08:23 ./usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.cpython-39-arm-linux-gnueabihf.so
-rw-r--r-- root/root     17781 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.pyx
-rw-r--r-- root/root    125808 2021-10-07 08:23 ./usr/lib/python3/dist-packages/tombo/_c_helper.cpython-310-arm-linux-gnueabihf.so
-rw-r--r-- root/root    125808 2021-10-07 08:23 ./usr/lib/python3/dist-packages/tombo/_c_helper.cpython-39-arm-linux-gnueabihf.so
-rw-r--r-- root/root     14889 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_c_helper.pyx
-rw-r--r-- root/root      5957 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_default_parameters.py
-rw-r--r-- root/root     53847 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_event_resquiggle.py
-rw-r--r-- root/root     13111 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_filter_reads.py
-rw-r--r-- root/root     75868 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_option_parsers.py
-rw-r--r-- root/root    104456 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_plot_commands.py
-rw-r--r-- root/root     19726 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_preprocess.py
-rw-r--r-- root/root     18691 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_text_output_commands.py
-rw-r--r-- root/root        65 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_version.py
-rw-r--r-- root/root     89722 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/resquiggle.py
-rw-r--r-- root/root     98581 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_helper.py
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/lib/python3/dist-packages/tombo/tombo_models/
-rw-r--r-- root/root     59864 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.5mC.model
-rw-r--r-- root/root     64557 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.6mA.model
-rw-r--r-- root/root     35716 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.CpG.model
-rw-r--r-- root/root     14775 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.dam.model
-rw-r--r-- root/root     15130 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.dcm.model
-rw-r--r-- root/root     51499 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.model
-rw-r--r-- root/root     20338 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.180mV.model
-rw-r--r-- root/root     20273 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.200mV.model
-rw-r--r-- root/root     29421 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.5mC.model
-rw-r--r-- root/root    206916 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_stats.py
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/share/
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/share/doc/
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/share/doc/tombo/
-rw-r--r-- root/root       221 2021-10-07 08:23 ./usr/share/doc/tombo/changelog.Debian.armhf.gz
-rw-r--r-- root/root       343 2021-10-07 08:23 ./usr/share/doc/tombo/changelog.Debian.gz
-rw-r--r-- root/root      3064 2021-10-07 08:23 ./usr/share/doc/tombo/copyright
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/share/man/
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/share/man/man1/
-rw-r--r-- root/root       762 2021-10-07 08:23 ./usr/share/man/man1/tombo.1.gz
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/share/python3/
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/share/python3/runtime.d/
-rwxr-xr-x root/root       125 2021-10-07 08:23 ./usr/share/python3/runtime.d/tombo.rtupdate
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/share/tombo/
drwxr-xr-x root/root         0 2021-10-07 08:23 ./usr/share/tombo/scripts/
-rw-r--r-- root/root      1141 2020-02-20 00:02 ./usr/share/tombo/scripts/debug_bandwidth.R
-rw-r--r-- root/root      6024 2020-02-20 00:02 ./usr/share/tombo/scripts/debug_est_alt.R
-rw-r--r-- root/root      3137 2020-02-20 00:02 ./usr/share/tombo/scripts/debug_params.R
-rwxr-xr-x root/root      1823 2021-10-07 08:23 ./usr/share/tombo/scripts/dump_per_read_statistics.py
-rw-r--r-- root/root      1452 2020-02-20 00:02 ./usr/share/tombo/scripts/outlier_robust_llr.R
-rw-r--r-- root/root       467 2020-02-20 00:02 ./usr/share/tombo/scripts/plot_correction.py
-rw-r--r-- root/root       632 2020-02-20 00:02 ./usr/share/tombo/scripts/plot_multi_correction.py
-rw-r--r-- root/root      1238 2020-02-20 00:02 ./usr/share/tombo/scripts/plot_single_read.py
-rw-r--r-- root/root       398 2020-02-20 00:02 ./usr/share/tombo/scripts/test_beta_priors.R


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 71080
Build-Time: 321
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1221
Job: tombo_1.5.1-3
Machine Architecture: armhf
Package: tombo
Package-Time: 1606
Source-Version: 1.5.1-3
Space: 71080
Status: successful
Version: 1.5.1-3+b1
--------------------------------------------------------------------------------
Finished at 2022-04-23T15:17:11Z
Build needed 00:26:46, 71080k disc space

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