Build log for tombo (1.5.1-2+b1) on armhf

tombo → 1.5.1-2+b1 → armhf → 2020-12-10 02:45:10

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01

+==============================================================================+
| tombo 1.5.1-2+b1 (armhf)                     Thu, 10 Dec 2020 02:33:33 +0000 |
+==============================================================================+

Package: tombo
Version: 1.5.1-2+b1
Source Version: 1.5.1-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-e8c84560-b347-4cb6-9a57-77c6abb414ed' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.9 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.0 MB]
Fetched 24.9 MB in 11s (2282 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'tombo' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/tombo.git
Please use:
git clone https://salsa.debian.org/med-team/tombo.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 22.3 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main tombo 1.5.1-2 (dsc) [2292 B]
Get:2 http://172.17.0.1/private bullseye-staging/main tombo 1.5.1-2 (tar) [22.3 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main tombo 1.5.1-2 (diff) [6344 B]
Fetched 22.3 MB in 4s (5703 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/tombo-bGDfqw/tombo-1.5.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/tombo-bGDfqw' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-fbZOGM/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-fbZOGM/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-fbZOGM/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-fbZOGM/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-fbZOGM/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-fbZOGM/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-fbZOGM/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-fbZOGM/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (4199 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  bsdextrautils libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 59 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-fbZOGM/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (41.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12594 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, cython3, sphinx-doc, python3-sphinx, python3-sphinx-rtd-theme, python3-sphinx-argparse, libjs-mathjax, python3-h5py, python3-mappy, python3-numpy, python3-scipy, python3-tqdm, python3-nose2
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, cython3, sphinx-doc, python3-sphinx, python3-sphinx-rtd-theme, python3-sphinx-argparse, libjs-mathjax, python3-h5py, python3-mappy, python3-numpy, python3-scipy, python3-tqdm, python3-nose2
dpkg-deb: building package 'sbuild-build-depends-tombo-dummy' in '/<<BUILDDIR>>/resolver-fbZOGM/apt_archive/sbuild-build-depends-tombo-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-tombo-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-fbZOGM/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-fbZOGM/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-fbZOGM/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-fbZOGM/apt_archive ./ Sources [597 B]
Get:5 copy:/<<BUILDDIR>>/resolver-fbZOGM/apt_archive ./ Packages [664 B]
Fetched 2594 B in 1s (4267 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install tombo build dependencies (apt-based resolver)
-----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libisl22 libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev ca-certificates cpp-10 cython3
  debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common
  docutils-doc dwz file fonts-font-awesome fonts-lato fonts-mathjax g++-10
  gcc-10 gcc-10-base gettext gettext-base groff-base intltool-debian libaec0
  libarchive-zip-perl libasan6 libatomic1 libblas3 libcc1-0 libcroco3
  libdebhelper-perl libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libgcc-10-dev libgcc-s1 libgfortran5
  libglib2.0-0 libgomp1 libgssapi-krb5-2 libhdf5-103-1 libhdf5-hl-100 libicu67
  libisl23 libjs-jquery libjs-mathjax libjs-sphinxdoc libjs-underscore
  libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblbfgsb0
  liblzf1 libmagic-mgc libmagic1 libnsl2 libpipeline1 libpython3-all-dev
  libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev
  libpython3.9-minimal libpython3.9-stdlib libsigsegv2 libssl1.1
  libstdc++-10-dev libstdc++6 libsub-override-perl libsz2 libtirpc-common
  libtirpc3 libtool libubsan1 libuchardet0 libxml2 m4 mailcap man-db
  media-types mime-support node-html5shiv node-jquery openssl po-debconf
  python-babel-localedata python3 python3-alabaster python3-all
  python3-all-dev python3-babel python3-certifi python3-chardet
  python3-coverage python3-decorator python3-dev python3-distutils python3-doc
  python3-docutils python3-h5py python3-h5py-serial python3-idna
  python3-imagesize python3-jinja2 python3-lib2to3 python3-mappy
  python3-markupsafe python3-minimal python3-nose2 python3-numpy
  python3-packaging python3-pkg-resources python3-pygments python3-pyparsing
  python3-requests python3-roman python3-scipy python3-setuptools python3-six
  python3-snowballstemmer python3-sphinx python3-sphinx-argparse
  python3-sphinx-rtd-theme python3-tqdm python3-tz python3-urllib3 python3.9
  python3.9-dev python3.9-doc python3.9-minimal sgml-base sphinx-common
  sphinx-doc sphinx-rtd-theme-common xml-core zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc gcc-10-locales cython-doc
  dh-make gcc-10-doc gettext-doc libasprintf-dev libgettextpo-dev groff
  krb5-doc krb5-user fonts-mathjax-extras fonts-stix libjs-mathjax-doc
  libstdc++-10-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
  apparmor less www-browser nodejs libmail-box-perl python3-tk python3-venv
  python-coverage-doc python3-examples fonts-linuxlibertine
  | ttf-linux-libertine texlive-lang-french texlive-latex-base
  texlive-latex-recommended python-h5py-doc python-jinja2-doc python-nose2-doc
  gfortran python-numpy-doc python3-pytest python3-numpy-dbg
  python-pygments-doc ttf-bitstream-vera python-pyparsing-doc
  python3-cryptography python3-openssl python3-socks python-requests-doc
  python-scipy-doc python-setuptools-doc python3-stemmer dvipng
  fonts-freefont-otf imagemagick-6.q16 latexmk texlive-fonts-recommended
  texlive-latex-extra texlive-plain-generic python3.9-venv binfmt-support
  sgml-base-doc
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs javascript-common krb5-locales libltdl-dev libjs-sizzle
  libmail-sendmail-perl libjs-jquery-isonscreen libjs-jquery-tablesorter
  libjs-jquery-throttle-debounce libpaper-utils python3-pil
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev ca-certificates cython3 debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism docutils-common docutils-doc
  dwz file fonts-font-awesome fonts-lato fonts-mathjax gettext gettext-base
  groff-base intltool-debian libaec0 libarchive-zip-perl libblas3 libcroco3
  libdebhelper-perl libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libgssapi-krb5-2
  libhdf5-103-1 libhdf5-hl-100 libicu67 libisl23 libjs-jquery libjs-mathjax
  libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 liblapack3 liblbfgsb0 liblzf1 libmagic-mgc libmagic1 libnsl2
  libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib
  libsigsegv2 libssl1.1 libsub-override-perl libsz2 libtirpc-common libtirpc3
  libtool libuchardet0 libxml2 m4 mailcap man-db media-types mime-support
  node-html5shiv node-jquery openssl po-debconf python-babel-localedata
  python3 python3-alabaster python3-all python3-all-dev python3-babel
  python3-certifi python3-chardet python3-coverage python3-decorator
  python3-dev python3-distutils python3-doc python3-docutils python3-h5py
  python3-h5py-serial python3-idna python3-imagesize python3-jinja2
  python3-lib2to3 python3-mappy python3-markupsafe python3-minimal
  python3-nose2 python3-numpy python3-packaging python3-pkg-resources
  python3-pygments python3-pyparsing python3-requests python3-roman
  python3-scipy python3-setuptools python3-six python3-snowballstemmer
  python3-sphinx python3-sphinx-argparse python3-sphinx-rtd-theme python3-tqdm
  python3-tz python3-urllib3 python3.9 python3.9-dev python3.9-doc
  python3.9-minimal sbuild-build-depends-tombo-dummy sgml-base sphinx-common
  sphinx-doc sphinx-rtd-theme-common xml-core zlib1g-dev
The following packages will be upgraded:
  cpp-10 g++-10 gcc-10 gcc-10-base libasan6 libatomic1 libcc1-0 libgcc-10-dev
  libgcc-s1 libgomp1 libstdc++-10-dev libstdc++6 libubsan1
13 upgraded, 129 newly installed, 0 to remove and 46 not upgraded.
Need to get 216 MB of archives.
After this operation, 156 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-fbZOGM/apt_archive ./ sbuild-build-depends-tombo-dummy 0.invalid.0 [956 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libisl23 armhf 0.23-1 [497 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10.2.0-19+rpi1 [38.4 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10.2.0-19+rpi1 [200 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10.2.0-19+rpi1 [36.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10.2.0-19+rpi1 [83.7 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10.2.0-19+rpi1 [8180 B]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libasan6 armhf 10.2.0-19+rpi1 [300 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10.2.0-19+rpi1 [115 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf g++-10 armhf 10.2.0-19+rpi1 [41.4 MB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libstdc++-10-dev armhf 10.2.0-19+rpi1 [1751 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libgcc-10-dev armhf 10.2.0-19+rpi1 [682 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf gcc-10 armhf 10.2.0-19+rpi1 [44.4 MB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf cpp-10 armhf 10.2.0-19+rpi1 [38.5 MB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10.2.0-19+rpi1 [409 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf fonts-lato all 2.0-2 [2698 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1h-1 [1271 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-minimal armhf 3.9.1~rc1-2+rpi1 [789 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf python3.9-minimal armhf 3.9.1~rc1-2+rpi1 [1624 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.9.0-4 [37.8 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf media-types all 1.0.1 [18.2 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf mailcap all 3.67 [31.3 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.18.3-4 [62.3 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.18.3-4 [108 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.18.3-4 [315 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.18.3-4 [142 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libtirpc-common all 1.2.6-3 [13.3 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libtirpc3 armhf 1.2.6-3 [71.2 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libnsl2 armhf 1.3.0-2 [33.2 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-stdlib armhf 3.9.1~rc1-2+rpi1 [1653 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf python3.9 armhf 3.9.1~rc1-2+rpi1 [460 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.9.0-4 [21.0 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.9.0-4 [64.1 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf sgml-base all 1.30 [15.1 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1h-1 [812 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20200601 [158 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf cython3 armhf 0.29.21-3+b1 [1234 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-1 [162 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.3-2 [1178 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.6-1 [78.4 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.6-1 [145 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20201102 [99.3 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf xml-core all 0.18+nmu1 [23.8 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf docutils-common all 0.16+dfsg-3 [129 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf docutils-doc all 0.16+dfsg-3 [931 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-2 [516 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2210 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.10-1 [121 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.0-19+rpi1 [231 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103-1 armhf 1.10.6+repack-2 [1184 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-100 armhf 1.10.6+repack-2 [78.1 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf node-jquery all 3.5.1+dfsg+~3.5.4-3 [396 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.4-3 [3996 B]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5667 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libjs-underscore all 1.9.1~dfsg-1 [99.4 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libjs-sphinxdoc all 3.3.1-1 [124 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-9 [24.6 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf liblzf1 armhf 3.6-3 [9268 B]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9 armhf 3.9.1~rc1-2+rpi1 [1412 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-dev armhf 3.9.1~rc1-2+rpi1 [3057 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.9.0-4 [21.2 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libpython3-all-dev armhf 3.9.0-4 [1068 B]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf node-html5shiv all 3.7.3+dfsg-3 [12.9 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf python-babel-localedata all 2.8.0+dfsg.1-4 [4996 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf python3-alabaster all 0.7.8-1.1 [18.6 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf python3-all armhf 3.9.0-4 [1056 B]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf python3.9-dev armhf 3.9.1~rc1-2+rpi1 [501 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.9.0-4 [1164 B]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf python3-all-dev armhf 3.9.0-4 [1060 B]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 50.3.0-1 [187 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf python3-tz all 2020.4-2 [34.8 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf python3-babel all 2.8.0+dfsg.1-4 [99.9 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf python3-certifi all 2020.6.20-1 [151 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf python3-chardet all 3.0.4-7 [81.1 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf python3-coverage armhf 5.1+dfsg.1-2+b1 [167 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf python3.9-doc all 3.9.1~rc1-2+rpi1 [10.9 MB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf python3-doc all 3.9.0-4 [21.2 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf python3-roman all 2.0.0-5 [9064 B]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf python3-docutils all 0.16+dfsg-3 [384 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.19.4-1+b2 [2930 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.15.0-2 [16.9 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf python3-h5py-serial armhf 2.10.0-9+b1 [580 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf python3-h5py all 2.10.0-9 [11.4 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf python3-idna all 2.10-1 [37.4 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf python3-imagesize all 1.2.0-2 [5824 B]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf python3-markupsafe armhf 1.1.1-1+b1 [14.8 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf python3-jinja2 all 2.11.2-1 [113 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf python3-mappy armhf 2.17+dfsg-12+b1 [133 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf python3-nose2 all 0.9.2-1 [94.1 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf python3-packaging all 20.4-1 [30.4 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf python3-pygments all 2.7.1+dfsg-1 [656 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf python3-urllib3 all 1.25.11-1 [107 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf python3-requests all 2.24.0+dfsg-1 [71.7 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf python3-scipy armhf 1.5.4-1 [12.0 MB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 50.3.0-1 [511 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf python3-snowballstemmer all 2.0.0-2 [58.2 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf sphinx-common all 3.3.1-1 [575 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf python3-sphinx all 3.3.1-1 [537 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf sphinx-rtd-theme-common all 0.5.0+dfsg-1 [994 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf python3-sphinx-argparse all 0.2.2-3 [41.2 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf python3-sphinx-rtd-theme all 0.5.0+dfsg-1 [20.3 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf python3-tqdm all 4.51.0-1 [86.5 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf sphinx-doc all 3.3.1-1 [1962 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 216 MB in 39s (5609 kB/s)
Selecting previously unselected package libisl23:armhf.
(Reading database ... 12594 files and directories currently installed.)
Preparing to unpack .../libisl23_0.23-1_armhf.deb ...
Unpacking libisl23:armhf (0.23-1) ...
Preparing to unpack .../libcc1-0_10.2.0-19+rpi1_armhf.deb ...
Unpacking libcc1-0:armhf (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
Preparing to unpack .../gcc-10-base_10.2.0-19+rpi1_armhf.deb ...
Unpacking gcc-10-base:armhf (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
Setting up gcc-10-base:armhf (10.2.0-19+rpi1) ...
(Reading database ... 12601 files and directories currently installed.)
Preparing to unpack .../libgcc-s1_10.2.0-19+rpi1_armhf.deb ...
Unpacking libgcc-s1:armhf (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
Setting up libgcc-s1:armhf (10.2.0-19+rpi1) ...
(Reading database ... 12601 files and directories currently installed.)
Preparing to unpack .../0-libgomp1_10.2.0-19+rpi1_armhf.deb ...
Unpacking libgomp1:armhf (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
Preparing to unpack .../1-libatomic1_10.2.0-19+rpi1_armhf.deb ...
Unpacking libatomic1:armhf (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
Preparing to unpack .../2-libasan6_10.2.0-19+rpi1_armhf.deb ...
Unpacking libasan6:armhf (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
Preparing to unpack .../3-libubsan1_10.2.0-19+rpi1_armhf.deb ...
Unpacking libubsan1:armhf (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
Preparing to unpack .../4-g++-10_10.2.0-19+rpi1_armhf.deb ...
Unpacking g++-10 (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
Preparing to unpack .../5-libstdc++-10-dev_10.2.0-19+rpi1_armhf.deb ...
Unpacking libstdc++-10-dev:armhf (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
Preparing to unpack .../6-libgcc-10-dev_10.2.0-19+rpi1_armhf.deb ...
Unpacking libgcc-10-dev:armhf (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
Preparing to unpack .../7-gcc-10_10.2.0-19+rpi1_armhf.deb ...
Unpacking gcc-10 (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
Preparing to unpack .../8-cpp-10_10.2.0-19+rpi1_armhf.deb ...
Unpacking cpp-10 (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
Preparing to unpack .../9-libstdc++6_10.2.0-19+rpi1_armhf.deb ...
Unpacking libstdc++6:armhf (10.2.0-19+rpi1) over (10.2.0-16+rpi1) ...
Setting up libstdc++6:armhf (10.2.0-19+rpi1) ...
Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 12601 files and directories currently installed.)
Preparing to unpack .../0-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../1-groff-base_1.22.4-5_armhf.deb ...
Unpacking groff-base (1.22.4-5) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../2-libpipeline1_1.5.3-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.3-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../3-man-db_2.9.3-2_armhf.deb ...
Unpacking man-db (2.9.3-2) ...
Selecting previously unselected package fonts-lato.
Preparing to unpack .../4-fonts-lato_2.0-2_all.deb ...
Unpacking fonts-lato (2.0-2) ...
Selecting previously unselected package libssl1.1:armhf.
Preparing to unpack .../5-libssl1.1_1.1.1h-1_armhf.deb ...
Unpacking libssl1.1:armhf (1.1.1h-1) ...
Selecting previously unselected package libpython3.9-minimal:armhf.
Preparing to unpack .../6-libpython3.9-minimal_3.9.1~rc1-2+rpi1_armhf.deb ...
Unpacking libpython3.9-minimal:armhf (3.9.1~rc1-2+rpi1) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../7-libexpat1_2.2.10-1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.10-1) ...
Selecting previously unselected package python3.9-minimal.
Preparing to unpack .../8-python3.9-minimal_3.9.1~rc1-2+rpi1_armhf.deb ...
Unpacking python3.9-minimal (3.9.1~rc1-2+rpi1) ...
Setting up libssl1.1:armhf (1.1.1h-1) ...
Setting up libpython3.9-minimal:armhf (3.9.1~rc1-2+rpi1) ...
Setting up libexpat1:armhf (2.2.10-1) ...
Setting up python3.9-minimal (3.9.1~rc1-2+rpi1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 13457 files and directories currently installed.)
Preparing to unpack .../00-python3-minimal_3.9.0-4_armhf.deb ...
Unpacking python3-minimal (3.9.0-4) ...
Selecting previously unselected package media-types.
Preparing to unpack .../01-media-types_1.0.1_all.deb ...
Unpacking media-types (1.0.1) ...
Selecting previously unselected package mailcap.
Preparing to unpack .../02-mailcap_3.67_all.deb ...
Unpacking mailcap (3.67) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../03-mime-support_3.66_all.deb ...
Unpacking mime-support (3.66) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../04-libkrb5support0_1.18.3-4_armhf.deb ...
Unpacking libkrb5support0:armhf (1.18.3-4) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../05-libk5crypto3_1.18.3-4_armhf.deb ...
Unpacking libk5crypto3:armhf (1.18.3-4) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../06-libkeyutils1_1.6.1-2_armhf.deb ...
Unpacking libkeyutils1:armhf (1.6.1-2) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../07-libkrb5-3_1.18.3-4_armhf.deb ...
Unpacking libkrb5-3:armhf (1.18.3-4) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../08-libgssapi-krb5-2_1.18.3-4_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.18.3-4) ...
Selecting previously unselected package libtirpc-common.
Preparing to unpack .../09-libtirpc-common_1.2.6-3_all.deb ...
Unpacking libtirpc-common (1.2.6-3) ...
Selecting previously unselected package libtirpc3:armhf.
Preparing to unpack .../10-libtirpc3_1.2.6-3_armhf.deb ...
Unpacking libtirpc3:armhf (1.2.6-3) ...
Selecting previously unselected package libnsl2:armhf.
Preparing to unpack .../11-libnsl2_1.3.0-2_armhf.deb ...
Unpacking libnsl2:armhf (1.3.0-2) ...
Selecting previously unselected package libpython3.9-stdlib:armhf.
Preparing to unpack .../12-libpython3.9-stdlib_3.9.1~rc1-2+rpi1_armhf.deb ...
Unpacking libpython3.9-stdlib:armhf (3.9.1~rc1-2+rpi1) ...
Selecting previously unselected package python3.9.
Preparing to unpack .../13-python3.9_3.9.1~rc1-2+rpi1_armhf.deb ...
Unpacking python3.9 (3.9.1~rc1-2+rpi1) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../14-libpython3-stdlib_3.9.0-4_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.9.0-4) ...
Setting up python3-minimal (3.9.0-4) ...
Selecting previously unselected package python3.
(Reading database ... 13924 files and directories currently installed.)
Preparing to unpack .../000-python3_3.9.0-4_armhf.deb ...
Unpacking python3 (3.9.0-4) ...
Selecting previously unselected package sgml-base.
Preparing to unpack .../001-sgml-base_1.30_all.deb ...
Unpacking sgml-base (1.30) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../002-libmagic-mgc_1%3a5.38-5_armhf.deb ...
Unpacking libmagic-mgc (1:5.38-5) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../003-libmagic1_1%3a5.38-5_armhf.deb ...
Unpacking libmagic1:armhf (1:5.38-5) ...
Selecting previously unselected package file.
Preparing to unpack .../004-file_1%3a5.38-5_armhf.deb ...
Unpacking file (1:5.38-5) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../005-gettext-base_0.19.8.1-10_armhf.deb ...
Unpacking gettext-base (0.19.8.1-10) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../006-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../007-m4_1.4.18-4_armhf.deb ...
Unpacking m4 (1.4.18-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../008-autoconf_2.69-11.1_all.deb ...
Unpacking autoconf (2.69-11.1) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../009-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../010-automake_1%3a1.16.2-4_all.deb ...
Unpacking automake (1:1.16.2-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../011-autopoint_0.19.8.1-10_all.deb ...
Unpacking autopoint (0.19.8.1-10) ...
Selecting previously unselected package openssl.
Preparing to unpack .../012-openssl_1.1.1h-1_armhf.deb ...
Unpacking openssl (1.1.1h-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../013-ca-certificates_20200601_all.deb ...
Unpacking ca-certificates (20200601) ...
Selecting previously unselected package cython3.
Preparing to unpack .../014-cython3_0.29.21-3+b1_armhf.deb ...
Unpacking cython3 (0.29.21-3+b1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../015-libtool_2.4.6-14_all.deb ...
Unpacking libtool (2.4.6-14) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../016-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../017-libdebhelper-perl_13.2.1_all.deb ...
Unpacking libdebhelper-perl (13.2.1) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../018-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../019-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../020-libfile-stripnondeterminism-perl_1.9.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.9.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../021-dh-strip-nondeterminism_1.9.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.9.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../022-libelf1_0.182-1_armhf.deb ...
Unpacking libelf1:armhf (0.182-1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../023-dwz_0.13-5_armhf.deb ...
Unpacking dwz (0.13-5) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../024-libglib2.0-0_2.66.3-2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.66.3-2) ...
Selecting previously unselected package libicu67:armhf.
Preparing to unpack .../025-libicu67_67.1-4_armhf.deb ...
Unpacking libicu67:armhf (67.1-4) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../026-libxml2_2.9.10+dfsg-6.3_armhf.deb ...
Unpacking libxml2:armhf (2.9.10+dfsg-6.3) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../027-libcroco3_0.6.13-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.13-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../028-gettext_0.19.8.1-10_armhf.deb ...
Unpacking gettext (0.19.8.1-10) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../029-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../030-po-debconf_1.0.21_all.deb ...
Unpacking po-debconf (1.0.21) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../031-debhelper_13.2.1_all.deb ...
Unpacking debhelper (13.2.1) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../032-python3-lib2to3_3.8.6-1_all.deb ...
Unpacking python3-lib2to3 (3.8.6-1) ...
Selecting previously unselected package python3-distutils.
Preparing to unpack .../033-python3-distutils_3.8.6-1_all.deb ...
Unpacking python3-distutils (3.8.6-1) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../034-dh-python_4.20201102_all.deb ...
Unpacking dh-python (4.20201102) ...
Selecting previously unselected package xml-core.
Preparing to unpack .../035-xml-core_0.18+nmu1_all.deb ...
Unpacking xml-core (0.18+nmu1) ...
Selecting previously unselected package docutils-common.
Preparing to unpack .../036-docutils-common_0.16+dfsg-3_all.deb ...
Unpacking docutils-common (0.16+dfsg-3) ...
Selecting previously unselected package docutils-doc.
Preparing to unpack .../037-docutils-doc_0.16+dfsg-3_all.deb ...
Unpacking docutils-doc (0.16+dfsg-3) ...
Selecting previously unselected package fonts-font-awesome.
Preparing to unpack .../038-fonts-font-awesome_5.0.10+really4.7.0~dfsg-2_all.deb ...
Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-2) ...
Selecting previously unselected package fonts-mathjax.
Preparing to unpack .../039-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
Selecting previously unselected package libaec0:armhf.
Preparing to unpack .../040-libaec0_1.0.4-1_armhf.deb ...
Unpacking libaec0:armhf (1.0.4-1) ...
Selecting previously unselected package libblas3:armhf.
Preparing to unpack .../041-libblas3_3.9.0-3_armhf.deb ...
Unpacking libblas3:armhf (3.9.0-3) ...
Selecting previously unselected package libexpat1-dev:armhf.
Preparing to unpack .../042-libexpat1-dev_2.2.10-1_armhf.deb ...
Unpacking libexpat1-dev:armhf (2.2.10-1) ...
Selecting previously unselected package libgfortran5:armhf.
Preparing to unpack .../043-libgfortran5_10.2.0-19+rpi1_armhf.deb ...
Unpacking libgfortran5:armhf (10.2.0-19+rpi1) ...
Selecting previously unselected package libsz2:armhf.
Preparing to unpack .../044-libsz2_1.0.4-1_armhf.deb ...
Unpacking libsz2:armhf (1.0.4-1) ...
Selecting previously unselected package libhdf5-103-1:armhf.
Preparing to unpack .../045-libhdf5-103-1_1.10.6+repack-2_armhf.deb ...
Unpacking libhdf5-103-1:armhf (1.10.6+repack-2) ...
Selecting previously unselected package libhdf5-hl-100:armhf.
Preparing to unpack .../046-libhdf5-hl-100_1.10.6+repack-2_armhf.deb ...
Unpacking libhdf5-hl-100:armhf (1.10.6+repack-2) ...
Selecting previously unselected package node-jquery.
Preparing to unpack .../047-node-jquery_3.5.1+dfsg+~3.5.4-3_all.deb ...
Unpacking node-jquery (3.5.1+dfsg+~3.5.4-3) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../048-libjs-jquery_3.5.1+dfsg+~3.5.4-3_all.deb ...
Unpacking libjs-jquery (3.5.1+dfsg+~3.5.4-3) ...
Selecting previously unselected package libjs-mathjax.
Preparing to unpack .../049-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
Selecting previously unselected package libjs-underscore.
Preparing to unpack .../050-libjs-underscore_1.9.1~dfsg-1_all.deb ...
Unpacking libjs-underscore (1.9.1~dfsg-1) ...
Selecting previously unselected package libjs-sphinxdoc.
Preparing to unpack .../051-libjs-sphinxdoc_3.3.1-1_all.deb ...
Unpacking libjs-sphinxdoc (3.3.1-1) ...
Selecting previously unselected package liblapack3:armhf.
Preparing to unpack .../052-liblapack3_3.9.0-3_armhf.deb ...
Unpacking liblapack3:armhf (3.9.0-3) ...
Selecting previously unselected package liblbfgsb0:armhf.
Preparing to unpack .../053-liblbfgsb0_3.0+dfsg.3-9_armhf.deb ...
Unpacking liblbfgsb0:armhf (3.0+dfsg.3-9) ...
Selecting previously unselected package liblzf1:armhf.
Preparing to unpack .../054-liblzf1_3.6-3_armhf.deb ...
Unpacking liblzf1:armhf (3.6-3) ...
Selecting previously unselected package libpython3.9:armhf.
Preparing to unpack .../055-libpython3.9_3.9.1~rc1-2+rpi1_armhf.deb ...
Unpacking libpython3.9:armhf (3.9.1~rc1-2+rpi1) ...
Selecting previously unselected package libpython3.9-dev:armhf.
Preparing to unpack .../056-libpython3.9-dev_3.9.1~rc1-2+rpi1_armhf.deb ...
Unpacking libpython3.9-dev:armhf (3.9.1~rc1-2+rpi1) ...
Selecting previously unselected package libpython3-dev:armhf.
Preparing to unpack .../057-libpython3-dev_3.9.0-4_armhf.deb ...
Unpacking libpython3-dev:armhf (3.9.0-4) ...
Selecting previously unselected package libpython3-all-dev:armhf.
Preparing to unpack .../058-libpython3-all-dev_3.9.0-4_armhf.deb ...
Unpacking libpython3-all-dev:armhf (3.9.0-4) ...
Selecting previously unselected package node-html5shiv.
Preparing to unpack .../059-node-html5shiv_3.7.3+dfsg-3_all.deb ...
Unpacking node-html5shiv (3.7.3+dfsg-3) ...
Selecting previously unselected package python-babel-localedata.
Preparing to unpack .../060-python-babel-localedata_2.8.0+dfsg.1-4_all.deb ...
Unpacking python-babel-localedata (2.8.0+dfsg.1-4) ...
Selecting previously unselected package python3-alabaster.
Preparing to unpack .../061-python3-alabaster_0.7.8-1.1_all.deb ...
Unpacking python3-alabaster (0.7.8-1.1) ...
Selecting previously unselected package python3-all.
Preparing to unpack .../062-python3-all_3.9.0-4_armhf.deb ...
Unpacking python3-all (3.9.0-4) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../063-zlib1g-dev_1%3a1.2.11.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Selecting previously unselected package python3.9-dev.
Preparing to unpack .../064-python3.9-dev_3.9.1~rc1-2+rpi1_armhf.deb ...
Unpacking python3.9-dev (3.9.1~rc1-2+rpi1) ...
Selecting previously unselected package python3-dev.
Preparing to unpack .../065-python3-dev_3.9.0-4_armhf.deb ...
Unpacking python3-dev (3.9.0-4) ...
Selecting previously unselected package python3-all-dev.
Preparing to unpack .../066-python3-all-dev_3.9.0-4_armhf.deb ...
Unpacking python3-all-dev (3.9.0-4) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../067-python3-pkg-resources_50.3.0-1_all.deb ...
Unpacking python3-pkg-resources (50.3.0-1) ...
Selecting previously unselected package python3-tz.
Preparing to unpack .../068-python3-tz_2020.4-2_all.deb ...
Unpacking python3-tz (2020.4-2) ...
Selecting previously unselected package python3-babel.
Preparing to unpack .../069-python3-babel_2.8.0+dfsg.1-4_all.deb ...
Unpacking python3-babel (2.8.0+dfsg.1-4) ...
Selecting previously unselected package python3-certifi.
Preparing to unpack .../070-python3-certifi_2020.6.20-1_all.deb ...
Unpacking python3-certifi (2020.6.20-1) ...
Selecting previously unselected package python3-chardet.
Preparing to unpack .../071-python3-chardet_3.0.4-7_all.deb ...
Unpacking python3-chardet (3.0.4-7) ...
Selecting previously unselected package python3-coverage.
Preparing to unpack .../072-python3-coverage_5.1+dfsg.1-2+b1_armhf.deb ...
Unpacking python3-coverage (5.1+dfsg.1-2+b1) ...
Selecting previously unselected package python3-decorator.
Preparing to unpack .../073-python3-decorator_4.4.2-2_all.deb ...
Unpacking python3-decorator (4.4.2-2) ...
Selecting previously unselected package python3.9-doc.
Preparing to unpack .../074-python3.9-doc_3.9.1~rc1-2+rpi1_all.deb ...
Unpacking python3.9-doc (3.9.1~rc1-2+rpi1) ...
Selecting previously unselected package python3-doc.
Preparing to unpack .../075-python3-doc_3.9.0-4_all.deb ...
Unpacking python3-doc (3.9.0-4) ...
Selecting previously unselected package python3-roman.
Preparing to unpack .../076-python3-roman_2.0.0-5_all.deb ...
Unpacking python3-roman (2.0.0-5) ...
Selecting previously unselected package python3-docutils.
Preparing to unpack .../077-python3-docutils_0.16+dfsg-3_all.deb ...
Unpacking python3-docutils (0.16+dfsg-3) ...
Selecting previously unselected package python3-numpy.
Preparing to unpack .../078-python3-numpy_1%3a1.19.4-1+b2_armhf.deb ...
Unpacking python3-numpy (1:1.19.4-1+b2) ...
Selecting previously unselected package python3-six.
Preparing to unpack .../079-python3-six_1.15.0-2_all.deb ...
Unpacking python3-six (1.15.0-2) ...
Selecting previously unselected package python3-h5py-serial.
Preparing to unpack .../080-python3-h5py-serial_2.10.0-9+b1_armhf.deb ...
Unpacking python3-h5py-serial (2.10.0-9+b1) ...
Selecting previously unselected package python3-h5py.
Preparing to unpack .../081-python3-h5py_2.10.0-9_all.deb ...
Unpacking python3-h5py (2.10.0-9) ...
Selecting previously unselected package python3-idna.
Preparing to unpack .../082-python3-idna_2.10-1_all.deb ...
Unpacking python3-idna (2.10-1) ...
Selecting previously unselected package python3-imagesize.
Preparing to unpack .../083-python3-imagesize_1.2.0-2_all.deb ...
Unpacking python3-imagesize (1.2.0-2) ...
Selecting previously unselected package python3-markupsafe.
Preparing to unpack .../084-python3-markupsafe_1.1.1-1+b1_armhf.deb ...
Unpacking python3-markupsafe (1.1.1-1+b1) ...
Selecting previously unselected package python3-jinja2.
Preparing to unpack .../085-python3-jinja2_2.11.2-1_all.deb ...
Unpacking python3-jinja2 (2.11.2-1) ...
Selecting previously unselected package python3-mappy.
Preparing to unpack .../086-python3-mappy_2.17+dfsg-12+b1_armhf.deb ...
Unpacking python3-mappy (2.17+dfsg-12+b1) ...
Selecting previously unselected package python3-nose2.
Preparing to unpack .../087-python3-nose2_0.9.2-1_all.deb ...
Unpacking python3-nose2 (0.9.2-1) ...
Selecting previously unselected package python3-pyparsing.
Preparing to unpack .../088-python3-pyparsing_2.4.7-1_all.deb ...
Unpacking python3-pyparsing (2.4.7-1) ...
Selecting previously unselected package python3-packaging.
Preparing to unpack .../089-python3-packaging_20.4-1_all.deb ...
Unpacking python3-packaging (20.4-1) ...
Selecting previously unselected package python3-pygments.
Preparing to unpack .../090-python3-pygments_2.7.1+dfsg-1_all.deb ...
Unpacking python3-pygments (2.7.1+dfsg-1) ...
Selecting previously unselected package python3-urllib3.
Preparing to unpack .../091-python3-urllib3_1.25.11-1_all.deb ...
Unpacking python3-urllib3 (1.25.11-1) ...
Selecting previously unselected package python3-requests.
Preparing to unpack .../092-python3-requests_2.24.0+dfsg-1_all.deb ...
Unpacking python3-requests (2.24.0+dfsg-1) ...
Selecting previously unselected package python3-scipy.
Preparing to unpack .../093-python3-scipy_1.5.4-1_armhf.deb ...
Unpacking python3-scipy (1.5.4-1) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../094-python3-setuptools_50.3.0-1_all.deb ...
Unpacking python3-setuptools (50.3.0-1) ...
Selecting previously unselected package python3-snowballstemmer.
Preparing to unpack .../095-python3-snowballstemmer_2.0.0-2_all.deb ...
Unpacking python3-snowballstemmer (2.0.0-2) ...
Selecting previously unselected package sphinx-common.
Preparing to unpack .../096-sphinx-common_3.3.1-1_all.deb ...
Unpacking sphinx-common (3.3.1-1) ...
Selecting previously unselected package python3-sphinx.
Preparing to unpack .../097-python3-sphinx_3.3.1-1_all.deb ...
Unpacking python3-sphinx (3.3.1-1) ...
Selecting previously unselected package sphinx-rtd-theme-common.
Preparing to unpack .../098-sphinx-rtd-theme-common_0.5.0+dfsg-1_all.deb ...
Unpacking sphinx-rtd-theme-common (0.5.0+dfsg-1) ...
Selecting previously unselected package python3-sphinx-argparse.
Preparing to unpack .../099-python3-sphinx-argparse_0.2.2-3_all.deb ...
Unpacking python3-sphinx-argparse (0.2.2-3) ...
Selecting previously unselected package python3-sphinx-rtd-theme.
Preparing to unpack .../100-python3-sphinx-rtd-theme_0.5.0+dfsg-1_all.deb ...
Unpacking python3-sphinx-rtd-theme (0.5.0+dfsg-1) ...
Selecting previously unselected package python3-tqdm.
Preparing to unpack .../101-python3-tqdm_4.51.0-1_all.deb ...
Unpacking python3-tqdm (4.51.0-1) ...
Selecting previously unselected package sphinx-doc.
Preparing to unpack .../102-sphinx-doc_3.3.1-1_all.deb ...
Unpacking sphinx-doc (3.3.1-1) ...
Selecting previously unselected package sbuild-build-depends-tombo-dummy.
Preparing to unpack .../103-sbuild-build-depends-tombo-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-tombo-dummy (0.invalid.0) ...
Setting up media-types (1.0.1) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libkeyutils1:armhf (1.6.1-2) ...
Setting up fonts-lato (2.0-2) ...
Setting up fonts-mathjax (2.7.9+dfsg-1) ...
Setting up docutils-doc (0.16+dfsg-3) ...
Setting up libjs-mathjax (2.7.9+dfsg-1) ...
Setting up libicu67:armhf (67.1-4) ...
Setting up libmagic-mgc (1:5.38-5) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.66.3-2) ...
No schema files found: doing nothing.
Setting up libtirpc-common (1.2.6-3) ...
Setting up libdebhelper-perl (13.2.1) ...
Setting up node-html5shiv (3.7.3+dfsg-3) ...
Setting up libmagic1:armhf (1:5.38-5) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-5) ...
Setting up libgomp1:armhf (10.2.0-19+rpi1) ...
Setting up libaec0:armhf (1.0.4-1) ...
Setting up python-babel-localedata (2.8.0+dfsg.1-4) ...
Setting up libasan6:armhf (10.2.0-19+rpi1) ...
Setting up libkrb5support0:armhf (1.18.3-4) ...
Setting up autotools-dev (20180224.1) ...
Setting up libblas3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libexpat1-dev:armhf (2.2.10-1) ...
Setting up liblzf1:armhf (3.6-3) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libatomic1:armhf (10.2.0-19+rpi1) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libk5crypto3:armhf (1.18.3-4) ...
Setting up libgfortran5:armhf (10.2.0-19+rpi1) ...
Setting up libubsan1:armhf (10.2.0-19+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up sgml-base (1.30) ...
Setting up libkrb5-3:armhf (1.18.3-4) ...
Setting up libisl23:armhf (0.23-1) ...
Setting up openssl (1.1.1h-1) ...
Setting up mailcap (3.67) ...
Setting up libelf1:armhf (0.182-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.3) ...
Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-2) ...
Setting up sphinx-rtd-theme-common (0.5.0+dfsg-1) ...
Setting up libcc1-0:armhf (10.2.0-19+rpi1) ...
Setting up cpp-10 (10.2.0-19+rpi1) ...
Setting up node-jquery (3.5.1+dfsg+~3.5.4-3) ...
Setting up libsz2:armhf (1.0.4-1) ...
Setting up libjs-underscore (1.9.1~dfsg-1) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up liblapack3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up mime-support (3.66) ...
Setting up libtool (2.4.6-14) ...
Setting up libgcc-10-dev:armhf (10.2.0-19+rpi1) ...
Setting up m4 (1.4.18-4) ...
Setting up ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
126 added, 0 removed; done.
Setting up libgssapi-krb5-2:armhf (1.18.3-4) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up gcc-10 (10.2.0-19+rpi1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up libhdf5-103-1:armhf (1.10.6+repack-2) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up xml-core (0.18+nmu1) ...
Setting up libjs-jquery (3.5.1+dfsg+~3.5.4-3) ...
Setting up liblbfgsb0:armhf (3.0+dfsg.3-9) ...
Setting up libhdf5-hl-100:armhf (1.10.6+repack-2) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libtirpc3:armhf (1.2.6-3) ...
Setting up gettext (0.19.8.1-10) ...
Setting up libstdc++-10-dev:armhf (10.2.0-19+rpi1) ...
Setting up g++-10 (10.2.0-19+rpi1) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3.9-doc (3.9.1~rc1-2+rpi1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libjs-sphinxdoc (3.3.1-1) ...
Setting up libnsl2:armhf (1.3.0-2) ...
Setting up python3-doc (3.9.0-4) ...
Setting up libpython3.9-stdlib:armhf (3.9.1~rc1-2+rpi1) ...
Setting up libpython3-stdlib:armhf (3.9.0-4) ...
Setting up sphinx-doc (3.3.1-1) ...
Setting up po-debconf (1.0.21) ...
Setting up libpython3.9:armhf (3.9.1~rc1-2+rpi1) ...
Setting up sphinx-common (3.3.1-1) ...
Setting up python3.9 (3.9.1~rc1-2+rpi1) ...
Setting up libpython3.9-dev:armhf (3.9.1~rc1-2+rpi1) ...
Setting up python3 (3.9.0-4) ...
Setting up python3-markupsafe (1.1.1-1+b1) ...
Setting up python3-tz (2020.4-2) ...
Setting up python3-six (1.15.0-2) ...
Setting up python3-roman (2.0.0-5) ...
Setting up python3-decorator (4.4.2-2) ...
Setting up python3-jinja2 (2.11.2-1) ...
Setting up python3-pyparsing (2.4.7-1) ...
Setting up python3-certifi (2020.6.20-1) ...
Setting up python3-snowballstemmer (2.0.0-2) ...
Setting up python3-idna (2.10-1) ...
Setting up cython3 (0.29.21-3+b1) ...
Setting up python3-urllib3 (1.25.11-1) ...
Setting up python3.9-dev (3.9.1~rc1-2+rpi1) ...
Setting up python3-lib2to3 (3.8.6-1) ...
Setting up python3-imagesize (1.2.0-2) ...
Setting up python3-pkg-resources (50.3.0-1) ...
Setting up python3-distutils (3.8.6-1) ...
Setting up dh-python (4.20201102) ...
Setting up libpython3-dev:armhf (3.9.0-4) ...
Setting up python3-setuptools (50.3.0-1) ...
Setting up python3-babel (2.8.0+dfsg.1-4) ...
update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up python3-alabaster (0.7.8-1.1) ...
Setting up python3-tqdm (4.51.0-1) ...
Setting up python3-all (3.9.0-4) ...
Setting up python3-coverage (5.1+dfsg.1-2+b1) ...
Setting up python3-mappy (2.17+dfsg-12+b1) ...
Setting up python3-nose2 (0.9.2-1) ...
Setting up python3-pygments (2.7.1+dfsg-1) ...
Setting up python3-packaging (20.4-1) ...
Setting up python3-chardet (3.0.4-7) ...
Setting up libpython3-all-dev:armhf (3.9.0-4) ...
Setting up python3-dev (3.9.0-4) ...
Setting up python3-requests (2.24.0+dfsg-1) ...
Setting up python3-numpy (1:1.19.4-1+b2) ...
Setting up python3-all-dev (3.9.0-4) ...
Setting up python3-scipy (1.5.4-1) ...
Setting up python3-h5py-serial (2.10.0-9+b1) ...
Setting up python3-h5py (2.10.0-9) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.2.1) ...
Processing triggers for libc-bin (2.31-4+rpi1) ...
Processing triggers for sgml-base (1.30) ...
Setting up docutils-common (0.16+dfsg-3) ...
Processing triggers for sgml-base (1.30) ...
Setting up python3-docutils (0.16+dfsg-3) ...
update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python3-sphinx (3.3.1-1) ...
Setting up python3-sphinx-rtd-theme (0.5.0+dfsg-1) ...
Setting up python3-sphinx-argparse (0.2.2-3) ...
Setting up sbuild-build-depends-tombo-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.35.1-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-19+rpi1 gcc-10_10.2.0-19+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.2.0-19+rpi1 libstdc++6_10.2.0-19+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.11 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc2-1 binutils_2.35.1-2+rpi1 binutils-arm-linux-gnueabihf_2.35.1-2+rpi1 binutils-common_2.35.1-2+rpi1 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 ca-certificates_20200601 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-19+rpi1 cython3_0.29.21-3+b1 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.2.1 debianutils_4.11.2 dh-autoreconf_19 dh-python_4.20201102 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 docutils-common_0.16+dfsg-3 docutils-doc_0.16+dfsg-3 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0+git20201010-2 fonts-font-awesome_5.0.10+really4.7.0~dfsg-2 fonts-lato_2.0-2 fonts-mathjax_2.7.9+dfsg-1 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-19+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-19+rpi1 gcc-10-base_10.2.0-19+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 libacl1_2.2.53-8 libaec0_1.0.4-1 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libasan6_10.2.0-19+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-19+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libbinutils_2.35.1-2+rpi1 libblas3_3.9.0-3 libblkid1_2.36-3 libboost-iostreams1.71.0_1.71.0-7 libbz2-1.0_1.0.8-4 libc-bin_2.31-4+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_10.2.0-19+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2+rpi1 libctf0_2.35.1-2+rpi1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdpkg-perl_1.20.5+rpi1 libelf1_0.182-1 libexpat1_2.2.10-1 libexpat1-dev_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libfdisk1_2.36-3 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-19+rpi1 libgcc-s1_10.2.0-19+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran5_10.2.0-19+rpi1 libglib2.0-0_2.66.3-2 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-19+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhdf5-103-1_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-3 libisl22_0.22.1-1 libisl23_0.23-1 libjs-jquery_3.5.1+dfsg+~3.5.4-3 libjs-mathjax_2.7.9+dfsg-1 libjs-sphinxdoc_3.3.1-1 libjs-underscore_1.9.1~dfsg-1 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libksba8_1.4.0-2 liblapack3_3.9.0-3 liblbfgsb0_3.0+dfsg.3-9 libldap-2.4-2_2.4.56+dfsg-1 libldap-common_2.4.56+dfsg-1 liblz4-1_1.9.2-2 liblzf1_3.6-3 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnpth0_1.6-3 libnsl2_1.3.0-2 libp11-kit0_0.23.21-2 libpam-cap_1:2.44-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpython3-all-dev_3.9.0-4 libpython3-dev_3.9.0-4 libpython3-stdlib_3.9.0-4 libpython3.9_3.9.1~rc1-2+rpi1 libpython3.9-dev_3.9.1~rc1-2+rpi1 libpython3.9-minimal_3.9.1~rc1-2+rpi1 libpython3.9-stdlib_3.9.1~rc1-2+rpi1 libreadline8_8.1~rc2-2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.4-2 libsigsegv2_2.12-2 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-19+rpi1 libstdc++6_10.2.0-19+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.6-2+rpi1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-19+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-2+rpi1 libunistring2_0.9.10-4 libuuid1_2.36-3 libxapian30_1.4.17-1 libxml2_2.9.10+dfsg-6.3 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 mailcap_3.67 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 media-types_1.0.1 mime-support_3.66 mount_2.36-3 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 netbase_6.2 node-html5shiv_3.7.3+dfsg-3 node-jquery_3.5.1+dfsg+~3.5.4-3 openssl_1.1.1h-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21 python-babel-localedata_2.8.0+dfsg.1-4 python3_3.9.0-4 python3-alabaster_0.7.8-1.1 python3-all_3.9.0-4 python3-all-dev_3.9.0-4 python3-babel_2.8.0+dfsg.1-4 python3-certifi_2020.6.20-1 python3-chardet_3.0.4-7 python3-coverage_5.1+dfsg.1-2+b1 python3-decorator_4.4.2-2 python3-dev_3.9.0-4 python3-distutils_3.8.6-1 python3-doc_3.9.0-4 python3-docutils_0.16+dfsg-3 python3-h5py_2.10.0-9 python3-h5py-serial_2.10.0-9+b1 python3-idna_2.10-1 python3-imagesize_1.2.0-2 python3-jinja2_2.11.2-1 python3-lib2to3_3.8.6-1 python3-mappy_2.17+dfsg-12+b1 python3-markupsafe_1.1.1-1+b1 python3-minimal_3.9.0-4 python3-nose2_0.9.2-1 python3-numpy_1:1.19.4-1+b2 python3-packaging_20.4-1 python3-pkg-resources_50.3.0-1 python3-pygments_2.7.1+dfsg-1 python3-pyparsing_2.4.7-1 python3-requests_2.24.0+dfsg-1 python3-roman_2.0.0-5 python3-scipy_1.5.4-1 python3-setuptools_50.3.0-1 python3-six_1.15.0-2 python3-snowballstemmer_2.0.0-2 python3-sphinx_3.3.1-1 python3-sphinx-argparse_0.2.2-3 python3-sphinx-rtd-theme_0.5.0+dfsg-1 python3-tqdm_4.51.0-1 python3-tz_2020.4-2 python3-urllib3_1.25.11-1 python3.9_3.9.1~rc1-2+rpi1 python3.9-dev_3.9.1~rc1-2+rpi1 python3.9-doc_3.9.1~rc1-2+rpi1 python3.9-minimal_3.9.1~rc1-2+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1~rc2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-tombo-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sgml-base_1.30 sphinx-common_3.3.1-1 sphinx-doc_3.3.1-1 sphinx-rtd-theme-common_0.5.0+dfsg-1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020d-1 util-linux_2.36-3 xml-core_0.18+nmu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.gc8QLUI6/trustedkeys.kbx': General error
gpgv: Signature made Wed Jul 15 12:35:57 2020 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./tombo_1.5.1-2.dsc
dpkg-source: info: extracting tombo in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking tombo_1.5.1.orig.tar.gz
dpkg-source: info: unpacking tombo_1.5.1-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying no_future.patch
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying mathjax.patch

Check disk space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 1.5.1-2+b1

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-e8c84560-b347-4cb6-9a57-77c6abb414ed
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package tombo
dpkg-buildpackage: info: source version 1.5.1-2+b1
dpkg-buildpackage: info: source distribution bullseye-staging
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3,sphinxdoc --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-arch
dh binary-arch --with python3,sphinxdoc --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:232: python3.9 setup.py config 
running config
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
I: pybuild base:232: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_default_parameters.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_event_resquiggle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_filter_reads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_option_parsers.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_plot_commands.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_preprocess.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_text_output_commands.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/resquiggle.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/tombo_helper.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/tombo_stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
running egg_info
creating ont_tombo.egg-info
writing ont_tombo.egg-info/PKG-INFO
writing dependency_links to ont_tombo.egg-info/dependency_links.txt
writing entry points to ont_tombo.egg-info/entry_points.txt
writing requirements to ont_tombo.egg-info/requires.txt
writing top-level names to ont_tombo.egg-info/top_level.txt
writing manifest file 'ont_tombo.egg-info/SOURCES.txt'
reading manifest file 'ont_tombo.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*' under directory 'cython'
writing manifest file 'ont_tombo.egg-info/SOURCES.txt'
copying tombo/_c_dynamic_programming.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
copying tombo/_c_helper.pyx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/debugDP.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/debugFit.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/debugRawDP.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotGroupComp.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotKmerDist.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotModelComp.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotMotifStats.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotMultiReadCorr.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotPerReadStats.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotROC.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotROCPerRead.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotReadCorr.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotSigMDS.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotSingleRead.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
copying tombo/R_scripts/plotSingleRun.R -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.5mC.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.6mA.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.CpG.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.dam.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.dcm.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.DNA.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.RNA.180mV.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.RNA.200mV.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
copying tombo/tombo_models/tombo.RNA.5mC.model -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models
running build_ext
cythoning tombo/_c_dynamic_programming.pyx to tombo/_c_dynamic_programming.cpp
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/tombo/_c_dynamic_programming.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
cythoning tombo/_c_helper.pyx to tombo/_c_helper.cpp
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<<PKGBUILDDIR>>/tombo/_c_helper.pyx
  tree = Parsing.p_module(s, pxd, full_module_name)
building 'tombo._c_dynamic_programming' extension
creating build
creating build/temp.linux-armhf-3.9
creating build/temp.linux-armhf-3.9/tombo
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c tombo/_c_dynamic_programming.cpp -o build/temp.linux-armhf-3.9/tombo/_c_dynamic_programming.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from tombo/_c_dynamic_programming.cpp:624:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
tombo/_c_dynamic_programming.cpp: In function 'PyObject* __pyx_pf_5tombo_22_c_dynamic_programming_2c_reg_z_scores(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, PyObject*)':
tombo/_c_dynamic_programming.cpp:3638:36: warning: '__pyx_v_np_max_half_z_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
 3638 |     __pyx_t_20 = PyFloat_FromDouble(__pyx_v_np_max_half_z_score); if (unlikely(!__pyx_t_20)) __PYX_ERR(0, 93, __pyx_L1_error)
      |                  ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/tombo/_c_dynamic_programming.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_dynamic_programming.cpython-39-arm-linux-gnueabihf.so
building 'tombo._c_helper' extension
arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c tombo/_c_helper.cpp -o build/temp.linux-armhf-3.9/tombo/_c_helper.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from tombo/_c_helper.cpp:624:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/tombo/_c_helper.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_helper.cpython-39-arm-linux-gnueabihf.so
sphinx-build -N -bhtml docs docs/build
Running Sphinx v3.3.1
Creating file ./tombo.rst.
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 11 source files that are out of date
updating environment: [new config] 11 added, 0 changed, 0 removed
reading sources... [  9%] examples
reading sources... [ 18%] filtering
reading sources... [ 27%] index
reading sources... [ 36%] model_training
reading sources... [ 45%] modified_base_detection
reading sources... [ 54%] plotting
reading sources... [ 63%] resquiggle
reading sources... [ 72%] rna
reading sources... [ 81%] text_output
reading sources... [ 90%] tombo
reading sources... [100%] tutorials

WARNING: autodoc: failed to import module 'tombo'; the following exception was raised:
No module named 'tombo'
WARNING: autodoc: failed to import module 'resquiggle' from module 'tombo'; the following exception was raised:
No module named 'tombo'
WARNING: autodoc: failed to import module 'tombo_helper' from module 'tombo'; the following exception was raised:
No module named 'tombo'
WARNING: autodoc: failed to import module 'tombo_stats' from module 'tombo'; the following exception was raised:
No module named 'tombo'
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [  9%] examples
writing output... [ 18%] filtering
writing output... [ 27%] index
writing output... [ 36%] model_training
writing output... [ 45%] modified_base_detection
writing output... [ 54%] plotting
writing output... [ 63%] resquiggle
writing output... [ 72%] rna
writing output... [ 81%] text_output
writing output... [ 90%] tombo
writing output... [100%] tutorials

generating indices... genindex done
writing additional pages... search done
copying images... [  4%] _images/testing_method_comparison.png
copying images... [  8%] _images/alt_density_est.png
copying images... [ 13%] _images/old_correction_plot.png
copying images... [ 17%] _images/outlier_robust_llr.gif
copying images... [ 21%] _images/dampened_fraction.png
copying images... [ 26%] _images/single_samp.png
copying images... [ 30%] _images/sample_comp.png
copying images... [ 34%] _images/model_comp.png
copying images... [ 39%] _images/alt_model_comp.png
copying images... [ 43%] _images/boxplot.png
copying images... [ 47%] _images/quantile.png
copying images... [ 52%] _images/density.png
copying images... [ 56%] _images/pre_read_5mC.png
copying images... [ 60%] _images/per_read_do_novo.png
copying images... [ 65%] _images/stat_dist.png
copying images... [ 69%] _images/kmer_levels.png
copying images... [ 73%] _images/roc.png
copying images... [ 78%] _images/per_read_stat_dist.png
copying images... [ 82%] _images/begin_half_z_scores.png
copying images... [ 86%] _images/begin_forward_pass.png
copying images... [ 91%] _images/adaptive_half_z_scores.png
copying images... [ 95%] _images/adaptive_forward_pass.png
copying images... [100%] _images/stat_dist_null.png

copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 4 warnings.

The HTML pages are in docs/build.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build; python3.9 -m nose2 -v 

----------------------------------------------------------------------
Ran 0 tests in 0.000s

OK
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/tmp 
running install
running build
running build_py
running egg_info
writing ont_tombo.egg-info/PKG-INFO
writing dependency_links to ont_tombo.egg-info/dependency_links.txt
writing entry points to ont_tombo.egg-info/entry_points.txt
writing requirements to ont_tombo.egg-info/requires.txt
writing top-level names to ont_tombo.egg-info/top_level.txt
reading manifest file 'ont_tombo.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*' under directory 'cython'
writing manifest file 'ont_tombo.egg-info/SOURCES.txt'
running build_ext
skipping 'tombo/_c_dynamic_programming.cpp' Cython extension (up-to-date)
skipping 'tombo/_c_helper.cpp' Cython extension (up-to-date)
running install_lib
creating /<<PKGBUILDDIR>>/debian/tmp/usr
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/__init__.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/__main__.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_default_parameters.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_event_resquiggle.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_filter_reads.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_option_parsers.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_plot_commands.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_preprocess.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_text_output_commands.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_version.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/resquiggle.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_helper.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_stats.py -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_dynamic_programming.pyx -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_helper.pyx -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/debugDP.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/debugFit.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/debugRawDP.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotGroupComp.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotKmerDist.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotModelComp.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotMotifStats.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotMultiReadCorr.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotPerReadStats.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotROC.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotROCPerRead.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotReadCorr.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotSigMDS.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotSingleRead.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotSingleRun.R -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts
creating /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.5mC.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.6mA.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.CpG.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.dam.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.dcm.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.RNA.180mV.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.RNA.200mV.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.RNA.5mC.model -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_dynamic_programming.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/tombo/_c_helper.cpython-39-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/__main__.py to __main__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_default_parameters.py to _default_parameters.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_event_resquiggle.py to _event_resquiggle.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_filter_reads.py to _filter_reads.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_option_parsers.py to _option_parsers.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_plot_commands.py to _plot_commands.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_preprocess.py to _preprocess.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_text_output_commands.py to _text_output_commands.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_version.py to _version.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/resquiggle.py to resquiggle.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_helper.py to tombo_helper.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_stats.py to tombo_stats.cpython-39.pyc
running install_egg_info
Copying ont_tombo.egg-info to /<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.9/dist-packages/ont_tombo-1.5.1.egg-info
Skipping SOURCES.txt
running install_scripts
Installing tombo script to /<<PKGBUILDDIR>>/debian/tmp/usr/bin
   dh_install -a -O--buildsystem=pybuild
   dh_installdocs -a -O--buildsystem=pybuild
   dh_sphinxdoc -a -O--buildsystem=pybuild
dh_sphinxdoc: warning: Sphinx documentation not found
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_installman -a -O--buildsystem=pybuild
   dh_python3 -a -O--buildsystem=pybuild
I: dh_python3 tools:114: replacing shebang in debian/tombo/usr/share/tombo/scripts/dump_per_read_statistics.py
   dh_installsystemduser -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
   dh_compress -a -O--buildsystem=pybuild
   debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
find debian -name "*.model" -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_missing -a -O--buildsystem=pybuild
   dh_dwz -a -a -O--buildsystem=pybuild
   dh_strip -a -a -O--buildsystem=pybuild
   dh_makeshlibs -a -a -O--buildsystem=pybuild
   dh_shlibdeps -a -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tombo/usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.cpython-39-arm-linux-gnueabihf.so debian/tombo/usr/lib/python3/dist-packages/tombo/_c_helper.cpython-39-arm-linux-gnueabihf.so were not linked against libpthread.so.0 (they use none of the library's symbols)
   dh_installdeb -a -O--buildsystem=pybuild
   dh_gencontrol -a -O--buildsystem=pybuild
dpkg-gencontrol: warning: package tombo: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package tombo: substitution variable ${python3:Versions} unused, but is defined
   dh_md5sums -a -O--buildsystem=pybuild
   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'tombo-dbgsym' in '../tombo-dbgsym_1.5.1-2+b1_armhf.deb'.
dpkg-deb: building package 'tombo' in '../tombo_1.5.1-2+b1_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../tombo_1.5.1-2+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-12-10T02:45:05Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


tombo_1.5.1-2+b1_armhf.changes:
-------------------------------

Format: 1.8
Date: Wed, 15 Jul 2020 13:47:27 +0200
Source: tombo (1.5.1-2)
Binary: tombo tombo-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 1.5.1-2+b1
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
 tombo      - identification of modified nucleotides from raw nanopore sequenci
Changes:
 tombo (1.5.1-2+b1) bullseye-staging; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for armhf; no source changes.
   * rebuild due to debcheck failure
Checksums-Sha1:
 0e73b5a97f2f127dad0a336243fd8fa618a60755 353180 tombo-dbgsym_1.5.1-2+b1_armhf.deb
 0a5ec61146966f979b55a621e85194571889871d 8052 tombo_1.5.1-2+b1_armhf.buildinfo
 47ff6781394121312f92920887a6781cfff0f17b 421216 tombo_1.5.1-2+b1_armhf.deb
Checksums-Sha256:
 4bf753cf07c4cec4bb923a149a8a1a5d516a9558f8a452a6517487b57011d3d1 353180 tombo-dbgsym_1.5.1-2+b1_armhf.deb
 8ca6e49250e0a69a8092474c1fa098e8e36b41f9aa65df55b6b284478d5d0c8f 8052 tombo_1.5.1-2+b1_armhf.buildinfo
 79e0ac747fc7c2806c8fcb1a240b915fc549e99336875c848e49b59e36fceb0f 421216 tombo_1.5.1-2+b1_armhf.deb
Files:
 cb1776c2e70df6c4ed25a046a741d668 353180 debug optional tombo-dbgsym_1.5.1-2+b1_armhf.deb
 13c11889726658f085b84e4b69737d97 8052 science optional tombo_1.5.1-2+b1_armhf.buildinfo
 878d0f59917dedd0af065b74ca96eae0 421216 science optional tombo_1.5.1-2+b1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


tombo-dbgsym_1.5.1-2+b1_armhf.deb
---------------------------------

 new Debian package, version 2.0.
 size 353180 bytes: control archive=648 bytes.
     419 bytes,    12 lines      control              
     297 bytes,     3 lines      md5sums              
 Package: tombo-dbgsym
 Source: tombo (1.5.1-2)
 Version: 1.5.1-2+b1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 421
 Depends: tombo (= 1.5.1-2+b1)
 Section: debug
 Priority: optional
 Description: debug symbols for tombo
 Build-Ids: 9713af7b3918d87925ac04a792495591c660ecf0 c4ef108d028dfe1cb4f7c4a72e9627430cf048dd

drwxr-xr-x root/root         0 2020-07-15 11:47 ./
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/lib/
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/lib/debug/.build-id/97/
-rw-r--r-- root/root    222452 2020-07-15 11:47 ./usr/lib/debug/.build-id/97/13af7b3918d87925ac04a792495591c660ecf0.debug
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/lib/debug/.build-id/c4/
-rw-r--r-- root/root    172276 2020-07-15 11:47 ./usr/lib/debug/.build-id/c4/ef108d028dfe1cb4f7c4a72e9627430cf048dd.debug
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root     20856 2020-07-15 11:47 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/tombo.debug
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/share/
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-07-15 11:47 ./usr/share/doc/tombo-dbgsym -> tombo


tombo_1.5.1-2+b1_armhf.deb
--------------------------

 new Debian package, version 2.0.
 size 421216 bytes: control archive=2884 bytes.
     821 bytes,    15 lines      control              
    5532 bytes,    61 lines      md5sums              
     414 bytes,    19 lines   *  postinst             #!/bin/sh
     384 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: tombo
 Source: tombo (1.5.1-2)
 Version: 1.5.1-2+b1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1380
 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), cython3, python3 (<< 3.10), python3 (>= 3.9~), python3-h5py-serial, python3-mappy, python3-numpy, python3-pkg-resources, python3-scipy, python3-tqdm, python3:any, python3-h5py
 Recommends: python3-pyfaidx, python3-rpy2
 Section: science
 Priority: optional
 Homepage: https://github.com/nanoporetech/tombo
 Description: identification of modified nucleotides from raw nanopore sequencing data
  Tombo is a suite of tools primarily for the identification of modified
  nucleotides from nanopore sequencing data. Tombo also provides tools for
  the analysis and visualization of raw nanopore signal.

drwxr-xr-x root/root         0 2020-07-15 11:47 ./
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/bin/
-rwxr-xr-x root/root       960 2020-07-15 11:47 ./usr/bin/tombo
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/lib/
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/lib/python3/
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/
-rw-r--r-- root/root      7908 2020-07-15 11:47 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/PKG-INFO
-rw-r--r-- root/root         1 2020-07-15 11:47 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/dependency_links.txt
-rw-r--r-- root/root        47 2020-07-15 11:47 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/entry_points.txt
-rw-r--r-- root/root        28 2020-07-15 11:47 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/requires.txt
-rw-r--r-- root/root         6 2020-07-15 11:47 ./usr/lib/python3/dist-packages/ont_tombo-1.5.1.egg-info/top_level.txt
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/lib/python3/dist-packages/tombo/
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/lib/python3/dist-packages/tombo/R_scripts/
-rw-r--r-- root/root      1254 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/debugDP.R
-rw-r--r-- root/root      1013 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/debugFit.R
-rw-r--r-- root/root      1888 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/debugRawDP.R
-rw-r--r-- root/root      5508 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotGroupComp.R
-rw-r--r-- root/root      5177 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotKmerDist.R
-rw-r--r-- root/root     12234 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotModelComp.R
-rw-r--r-- root/root      6939 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotMotifStats.R
-rw-r--r-- root/root      2942 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotMultiReadCorr.R
-rw-r--r-- root/root      3862 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotPerReadStats.R
-rw-r--r-- root/root       382 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotROC.R
-rw-r--r-- root/root      1072 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotROCPerRead.R
-rw-r--r-- root/root      1757 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotReadCorr.R
-rw-r--r-- root/root       369 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotSigMDS.R
-rw-r--r-- root/root      1499 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotSingleRead.R
-rw-r--r-- root/root      3424 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/R_scripts/plotSingleRun.R
-rw-r--r-- root/root      3547 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/__init__.py
-rw-r--r-- root/root     13107 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/__main__.py
-rw-r--r-- root/root    104340 2020-07-15 11:47 ./usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.cpython-39-arm-linux-gnueabihf.so
-rw-r--r-- root/root     17781 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_c_dynamic_programming.pyx
-rw-r--r-- root/root    125968 2020-07-15 11:47 ./usr/lib/python3/dist-packages/tombo/_c_helper.cpython-39-arm-linux-gnueabihf.so
-rw-r--r-- root/root     14889 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_c_helper.pyx
-rw-r--r-- root/root      5957 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_default_parameters.py
-rw-r--r-- root/root     53847 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_event_resquiggle.py
-rw-r--r-- root/root     13111 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_filter_reads.py
-rw-r--r-- root/root     75868 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_option_parsers.py
-rw-r--r-- root/root    104456 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_plot_commands.py
-rw-r--r-- root/root     19726 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_preprocess.py
-rw-r--r-- root/root     18691 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_text_output_commands.py
-rw-r--r-- root/root        65 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/_version.py
-rw-r--r-- root/root     89722 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/resquiggle.py
-rw-r--r-- root/root     98581 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_helper.py
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/lib/python3/dist-packages/tombo/tombo_models/
-rw-r--r-- root/root     59864 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.5mC.model
-rw-r--r-- root/root     64557 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.6mA.model
-rw-r--r-- root/root     35716 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.CpG.model
-rw-r--r-- root/root     14775 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.dam.model
-rw-r--r-- root/root     15130 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.dcm.model
-rw-r--r-- root/root     51499 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.DNA.model
-rw-r--r-- root/root     20338 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.180mV.model
-rw-r--r-- root/root     20273 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.200mV.model
-rw-r--r-- root/root     29421 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_models/tombo.RNA.5mC.model
-rw-r--r-- root/root    206916 2020-02-20 00:02 ./usr/lib/python3/dist-packages/tombo/tombo_stats.py
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/share/
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/share/doc/tombo/
-rw-r--r-- root/root       219 2020-07-15 11:47 ./usr/share/doc/tombo/changelog.Debian.armhf.gz
-rw-r--r-- root/root       265 2020-07-15 11:47 ./usr/share/doc/tombo/changelog.Debian.gz
-rw-r--r-- root/root      3064 2020-07-15 11:47 ./usr/share/doc/tombo/copyright
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/share/man/
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/share/man/man1/
-rw-r--r-- root/root       762 2020-07-15 11:47 ./usr/share/man/man1/tombo.1.gz
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/share/python3/
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/share/python3/runtime.d/
-rwxr-xr-x root/root       125 2020-07-15 11:47 ./usr/share/python3/runtime.d/tombo.rtupdate
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/share/tombo/
drwxr-xr-x root/root         0 2020-07-15 11:47 ./usr/share/tombo/scripts/
-rw-r--r-- root/root      1141 2020-02-20 00:02 ./usr/share/tombo/scripts/debug_bandwidth.R
-rw-r--r-- root/root      6024 2020-02-20 00:02 ./usr/share/tombo/scripts/debug_est_alt.R
-rw-r--r-- root/root      3137 2020-02-20 00:02 ./usr/share/tombo/scripts/debug_params.R
-rwxr-xr-x root/root      1823 2020-07-15 11:47 ./usr/share/tombo/scripts/dump_per_read_statistics.py
-rw-r--r-- root/root      1452 2020-02-20 00:02 ./usr/share/tombo/scripts/outlier_robust_llr.R
-rw-r--r-- root/root       467 2020-02-20 00:02 ./usr/share/tombo/scripts/plot_correction.py
-rw-r--r-- root/root       632 2020-02-20 00:02 ./usr/share/tombo/scripts/plot_multi_correction.py
-rw-r--r-- root/root      1238 2020-02-20 00:02 ./usr/share/tombo/scripts/plot_single_read.py
-rw-r--r-- root/root       398 2020-02-20 00:02 ./usr/share/tombo/scripts/test_beta_priors.R


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 64776
Build-Time: 74
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 592
Job: tombo_1.5.1-2
Machine Architecture: armhf
Package: tombo
Package-Time: 692
Source-Version: 1.5.1-2
Space: 64776
Status: successful
Version: 1.5.1-2+b1
--------------------------------------------------------------------------------
Finished at 2020-12-10T02:45:05Z
Build needed 00:11:32, 64776k disk space
Raspbian Package Auto-Building

Build log for tombo (1.5.1-2+b1) on armhf
