spoa →
4.1.4-2 →
armhf → 2024-07-29 00:29:16
sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023
+==============================================================================+
| spoa 4.1.4-2 (armhf) Sun, 28 Jul 2024 23:48:28 +0000 |
+==============================================================================+
Package: spoa
Version: 4.1.4-2
Source Version: 4.1.4-2
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-e36d99c0-65b5-4b46-9fd1-e9dd4eb017cb' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/spoa-WkkbjU/resolver-4mK6W1' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.6 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.1 MB]
Fetched 29.7 MB in 5s (5660 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'spoa' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/spoa.git
Please use:
git clone https://salsa.debian.org/med-team/spoa.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 58.7 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main spoa 4.1.4-2 (dsc) [2306 B]
Get:2 http://172.17.4.1/private trixie-staging/main spoa 4.1.4-2 (tar) [47.5 kB]
Get:3 http://172.17.4.1/private trixie-staging/main spoa 4.1.4-2 (diff) [8916 B]
Fetched 58.7 kB in 0s (819 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/spoa-WkkbjU/spoa-4.1.4' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/spoa-WkkbjU' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev, libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev, libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [749 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [739 B]
Fetched 2097 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates cron cron-daemon-common dbus dbus-bin dbus-daemon
dbus-session-bus-common dbus-system-bus-common dmsetup
libalgorithm-diff-perl libalgorithm-merge-perl libapparmor1
libarchive-cpio-perl libcryptsetup12 libdbus-1-3 libdevmapper1.02.1
libfdisk1 libfile-fcntllock-perl libjson-c5 libkmod2 libltdl-dev libltdl7
libmail-sendmail-perl libsys-hostname-long-perl libsystemd-shared netbase
openssl systemd systemd-dev systemd-timesyncd
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
cmake cmake-data d-shlibs googletest libarchive13t64 libbioparser-dev
libbiosoup-dev libbrotli1 libcereal-dev libcurl4t64 libgssapi-krb5-2
libgtest-dev libjsoncpp25 libkrb5-3 libnghttp2-14 libproc2-0 libpsl5t64
librhash0 librtmp1 libsimde-dev libssh2-1t64 libuv1t64 procps rapidjson-dev
zlib1g-dev
Suggested packages:
cmake-doc cmake-format elpa-cmake-mode ninja-build lrzip krb5-doc krb5-user
rapidjson-doc
Recommended packages:
krb5-locales publicsuffix libssl3 psmisc linux-sysctl-defaults
The following NEW packages will be installed:
cmake cmake-data d-shlibs googletest libarchive13t64 libbioparser-dev
libbiosoup-dev libbrotli1 libcereal-dev libcurl4t64 libgssapi-krb5-2
libgtest-dev libjsoncpp25 libkrb5-3 libnghttp2-14 libproc2-0 libpsl5t64
librhash0 librtmp1 libsimde-dev libssh2-1t64 libuv1t64 procps rapidjson-dev
sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 26 newly installed, 0 to remove and 21 not upgraded.
Need to get 15.5 MB of archives.
After this operation, 64.5 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf libproc2-0 armhf 2:4.0.4-5 [55.2 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf procps armhf 2:4.0.4-5 [848 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf libarchive13t64 armhf 3.7.2-2.1 [299 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2+b1 [278 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libkrb5-3 armhf 1.21.2-1 [280 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libgssapi-krb5-2 armhf 1.21.2-1 [112 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.62.1-2 [62.9 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.7 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [52.5 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libssh2-1t64 armhf 1.11.0-4.1+rpi1 [197 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf libcurl4t64 armhf 8.8.0-4+rpi1 [394 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libjsoncpp25 armhf 1.9.5-6 [64.7 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf librhash0 armhf 1.4.3-3 [142 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf libuv1t64 armhf 1.48.0-5+rpi1 [133 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf cmake-data all 3.29.6-1 [2168 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf cmake armhf 3.29.6-1 [7928 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf d-shlibs all 0.106 [10.9 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf googletest all 1.14.0-1+rpi1 [512 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libbiosoup-dev all 0.11.0-2 [8000 B]
Get:21 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1 [903 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libbioparser-dev all 3.1.0-1 [9108 B]
Get:23 http://172.17.4.1/private trixie-staging/main armhf rapidjson-dev all 1.1.0+dfsg2-7.2 [97.8 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libcereal-dev armhf 1.3.2+dfsg-4+rpi1 [221 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libgtest-dev armhf 1.14.0-1+rpi1 [236 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libsimde-dev all 0.8.2-1 [465 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libproc2-0:armhf.
(Reading database ... 16263 files and directories currently installed.)
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Setting up libsimde-dev (0.8.2-1) ...
Setting up libbrotli1:armhf (1.1.0-2+b1) ...
Setting up libuv1t64:armhf (1.48.0-5+rpi1) ...
Setting up libpsl5t64:armhf (0.21.2-1.1) ...
Setting up libnghttp2-14:armhf (1.62.1-2) ...
Setting up googletest (1.14.0-1+rpi1) ...
Setting up rapidjson-dev (1.1.0+dfsg2-7.2) ...
Setting up libbiosoup-dev (0.11.0-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b4) ...
Setting up libproc2-0:armhf (2:4.0.4-5) ...
Setting up libjsoncpp25:armhf (1.9.5-6) ...
Setting up d-shlibs (0.106) ...
Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1) ...
Setting up libbioparser-dev (3.1.0-1) ...
Setting up librhash0:armhf (1.4.3-3) ...
Setting up procps (2:4.0.4-5) ...
Setting up cmake-data (3.29.6-1) ...
Setting up libkrb5-3:armhf (1.21.2-1) ...
Setting up libssh2-1t64:armhf (1.11.0-4.1+rpi1) ...
Setting up libarchive13t64:armhf (3.7.2-2.1) ...
Setting up libgtest-dev:armhf (1.14.0-1+rpi1) ...
Setting up libcereal-dev (1.3.2+dfsg-4+rpi1) ...
Setting up libgssapi-krb5-2:armhf (1.21.2-1) ...
Setting up libcurl4t64:armhf (8.8.0-4+rpi1) ...
Setting up cmake (3.29.6-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for man-db (2.12.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for libc-bin (2.38-13+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep 1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.41-6+rpi1+b1 dpkg-dev_1.22.6+rpi1 g++-12_12.4.0-1+rpi1 g++-13_13.3.0-1+rpi1 gcc-12_12.4.0-1+rpi1 gcc-13_13.3.0-1+rpi1 libc6-dev_2.38-13+rpi1 libstdc++-12-dev_12.4.0-1+rpi1 libstdc++-13-dev_13.3.0-1+rpi1 libstdc++6_14-20240221-2.1+rpi1 linux-libc-dev_6.5.6-1+rpi1+b3
Package versions: adduser_3.137 apt_2.9.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-1 autotools-dev_20220109.1 base-files_13.3+rpi1 base-passwd_3.6.4 bash_5.2.21-2.1 binutils_2.41-6+rpi1+b1 binutils-arm-linux-gnueabihf_2.41-6+rpi1+b1 binutils-common_2.41-6+rpi1+b1 bsdextrautils_2.40.2-1 bsdutils_1:2.40.2-1 build-essential_12.10 bzip2_1.0.8-5.1 ca-certificates_20240203 cmake_3.29.6-1 cmake-data_3.29.6-1 coreutils_9.4-3.1 cpp_4:13.2.0-1+rpi1 cpp-12_12.4.0-1+rpi1 cpp-13_13.3.0-1+rpi1 cpp-13-arm-linux-gnueabihf_13.3.0-1+rpi1 cron_3.0pl1-189 cron-daemon-common_3.0pl1-189 d-shlibs_0.106 dash_0.5.12-9 dbus_1.14.10-4+b1 dbus-bin_1.14.10-4+b1 dbus-daemon_1.14.10-4+b1 dbus-session-bus-common_1.14.10-4 dbus-system-bus-common_1.14.10-4 debconf_1.5.87 debhelper_13.16 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-7 dmsetup_2:1.02.196-1+b1 dpkg_1.22.6+rpi1 dpkg-dev_1.22.6+rpi1 dwz_0.15-1+b2 e2fsprogs_1.47.1-1 fakeroot_1.33-1 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libasan8_14-20240221-2.1+rpi1 libassuan0_2.5.6-1 libatomic1_14-20240221-2.1+rpi1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-4 libaudit1_1:3.1.2-4 libbinutils_2.41-6+rpi1+b1 libbioparser-dev_3.1.0-1 libbiosoup-dev_0.11.0-2 libblkid1_2.40.2-1 libbrotli1_1.1.0-2+b1 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.38-13+rpi1 libc-dev-bin_2.38-13+rpi1 libc6_2.38-13+rpi1 libc6-dev_2.38-13+rpi1 libcap-ng0_0.8.5-1 libcap2_1:2.66-5 libcc1-0_14-20240221-2.1+rpi1 libcereal-dev_1.3.2+dfsg-4+rpi1 libcom-err2_1.47.1-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libcryptsetup12_2:2.7.2-2+rpi1 libctf-nobfd0_2.41-6+rpi1+b1 libctf0_2.41-6+rpi1+b1 libcurl4t64_8.8.0-4+rpi1 libdb5.3t64_5.3.28+dfsg2-7 libdbus-1-3_1.14.10-4+b1 libdebconfclient0_0.272 libdebhelper-perl_13.16 libdevmapper1.02.1_2:1.02.196-1+b1 libdpkg-perl_1.22.6+rpi1 libelf1t64_0.191-1+rpi1 libexpat1_2.6.2-1 libext2fs2t64_1.47.1-1 libfakeroot_1.33-1 libfdisk1_2.40.2-1 libffi8_3.4.6-1 libfile-fcntllock-perl_0.22-4+b3 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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: spoa
Binary: spoa, libspoa7.0.0, libspoa-dev
Architecture: any
Version: 4.1.4-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://github.com/rvaser/spoa
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/spoa
Vcs-Git: https://salsa.debian.org/med-team/spoa.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev, libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev, libcpu-features-dev [any-amd64 any-i386]
Package-List:
libspoa-dev deb libdevel optional arch=any
libspoa7.0.0 deb libs optional arch=any
spoa deb science optional arch=any
Checksums-Sha1:
4238e0d435b3e0df7d0b377d07f71fe463b9f836 47516 spoa_4.1.4.orig.tar.gz
b6b267b927d061faad721546907cfc2fe5f8de17 8916 spoa_4.1.4-2.debian.tar.xz
Checksums-Sha256:
ea696650460b17881595454c2546a05905f2724927dbbf4d71f4bb8a3f6a99cd 47516 spoa_4.1.4.orig.tar.gz
4829ccc110a3b45b65ec89bf781d0b872a3b3e7d05dd0ea6f83138ea9c8b96fe 8916 spoa_4.1.4-2.debian.tar.xz
Files:
b8eb09427cc97cdf94602ad71828adbf 47516 spoa_4.1.4.orig.tar.gz
4b1c264b2541ae76ad230cedf82d1dbc 8916 spoa_4.1.4-2.debian.tar.xz
Dgit: 42af53d79785430a8d68c815f2e48d8786ebc476 debian archive/debian/4.1.4-2 https://git.dgit.debian.org/spoa
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gpgv: Signature made Wed Jul 24 20:03:27 2024 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./spoa_4.1.4-2.dsc: no acceptable signature found
dpkg-source: info: extracting spoa in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking spoa_4.1.4.orig.tar.gz
dpkg-source: info: unpacking spoa_4.1.4-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-ftbfs-gcc-10.patch
dpkg-source: info: applying use_debian_packaged_libs.patch
dpkg-source: info: applying shared_and_static.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-e36d99c0-65b5-4b46-9fd1-e9dd4eb017cb
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package spoa
dpkg-buildpackage: info: source version 4.1.4-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --no-parallel
dh_autoreconf_clean -O--no-parallel
dh_clean -O--no-parallel
debian/rules binary-arch
dh binary-arch --no-parallel
dh_update_autotools_config -a -O--no-parallel
dh_autoreconf -a -O--no-parallel
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/arm-linux-gnueabihf/cmake/CpuFeatures
cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/arm-linux-gnueabihf/cmake/CpuFeatures ..
-- The CXX compiler identification is GNU 13.3.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done (0.6s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
spoa_build_executable
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a -O--no-parallel
cd obj-arm-linux-gnueabihf && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/spoa.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 7%] Building CXX object CMakeFiles/spoa.dir/src/alignment_engine.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -c /<<PKGBUILDDIR>>/src/alignment_engine.cpp
[ 14%] Building CXX object CMakeFiles/spoa.dir/src/graph.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/graph.cpp.o -MF CMakeFiles/spoa.dir/src/graph.cpp.o.d -o CMakeFiles/spoa.dir/src/graph.cpp.o -c /<<PKGBUILDDIR>>/src/graph.cpp
[ 21%] Building CXX object CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -MF CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o.d -o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -c /<<PKGBUILDDIR>>/src/simd_alignment_engine_dispatcher.cpp
[ 28%] Building CXX object CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -c /<<PKGBUILDDIR>>/src/sisd_alignment_engine.cpp
[ 35%] Building CXX object CMakeFiles/spoa.dir/src/version.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/version.cpp.o -MF CMakeFiles/spoa.dir/src/version.cpp.o.d -o CMakeFiles/spoa.dir/src/version.cpp.o -c /<<PKGBUILDDIR>>/src/version.cpp
[ 42%] Linking CXX shared library lib/libspoa.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libspoa.so.7.0.0 -o lib/libspoa.so.7.0.0 CMakeFiles/spoa.dir/src/alignment_engine.cpp.o CMakeFiles/spoa.dir/src/graph.cpp.o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o CMakeFiles/spoa.dir/src/version.cpp.o
/usr/bin/cmake -E cmake_symlink_library lib/libspoa.so.7.0.0 lib/libspoa.so.7.0.0 lib/libspoa.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 42%] Built target spoa
make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/spoa_static.dir/DependInfo.cmake "--color="
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make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 50%] Building CXX object CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -c /<<PKGBUILDDIR>>/src/alignment_engine.cpp
[ 57%] Building CXX object CMakeFiles/spoa_static.dir/src/graph.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/graph.cpp.o -MF CMakeFiles/spoa_static.dir/src/graph.cpp.o.d -o CMakeFiles/spoa_static.dir/src/graph.cpp.o -c /<<PKGBUILDDIR>>/src/graph.cpp
[ 64%] Building CXX object CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -c /<<PKGBUILDDIR>>/src/sisd_alignment_engine.cpp
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/usr/bin/cmake -P CMakeFiles/spoa_static.dir/cmake_clean_target.cmake
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/usr/bin/ar qc lib/libspoa_static.a CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/graph.cpp.o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o
/usr/bin/ranlib lib/libspoa_static.a
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[ 71%] Built target spoa_static
make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/spoa_exe.dir/DependInfo.cmake "--color="
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make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/build
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[ 78%] Building CXX object CMakeFiles/spoa_exe.dir/src/main.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_exe.dir/src/main.cpp.o -MF CMakeFiles/spoa_exe.dir/src/main.cpp.o.d -o CMakeFiles/spoa_exe.dir/src/main.cpp.o -c /<<PKGBUILDDIR>>/src/main.cpp
[ 85%] Linking CXX executable bin/spoa
/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_exe.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/spoa_exe.dir/src/main.cpp.o -o bin/spoa -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/lib: lib/libspoa.so.7.0.0 -lz
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 85%] Built target spoa_exe
make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/spoa_test.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 92%] Building CXX object CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -MF CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o.d -o CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -c /<<PKGBUILDDIR>>/test/spoa_test.cpp
[100%] Linking CXX executable bin/spoa_test
/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -o bin/spoa_test -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/lib lib/libspoa.so.7.0.0 -lz /usr/lib/arm-linux-gnueabihf/libgtest_main.a /usr/lib/arm-linux-gnueabihf/libgtest.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target spoa_test
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
`find . -name spoa_test`
Running main() from ./googletest/src/gtest_main.cc
[==========] Running 22 tests from 2 test suites.
[----------] Global test environment set-up.
[----------] 3 tests from SpoaAlignmentTest
[ RUN ] SpoaAlignmentTest.TypeError
[ OK ] SpoaAlignmentTest.TypeError (0 ms)
[ RUN ] SpoaAlignmentTest.EmptyInput
[ OK ] SpoaAlignmentTest.EmptyInput (0 ms)
[ RUN ] SpoaAlignmentTest.LargeInput
[ OK ] SpoaAlignmentTest.LargeInput (0 ms)
[----------] 3 tests from SpoaAlignmentTest (0 ms total)
[----------] 19 tests from SpoaTest
[ RUN ] SpoaTest.Clear
[ OK ] SpoaTest.Clear (1161 ms)
[ RUN ] SpoaTest.Local
[ OK ] SpoaTest.Local (571 ms)
[ RUN ] SpoaTest.LocalAffine
[ OK ] SpoaTest.LocalAffine (733 ms)
[ RUN ] SpoaTest.LocalConvex
[ OK ] SpoaTest.LocalConvex (1235 ms)
[ RUN ] SpoaTest.LocalWithQualities
[ OK ] SpoaTest.LocalWithQualities (573 ms)
[ RUN ] SpoaTest.LocalAffineWithQualities
[ OK ] SpoaTest.LocalAffineWithQualities (731 ms)
[ RUN ] SpoaTest.LocalConvexWithQualities
[ OK ] SpoaTest.LocalConvexWithQualities (1238 ms)
[ RUN ] SpoaTest.Global
[ OK ] SpoaTest.Global (513 ms)
[ RUN ] SpoaTest.GlobalAffine
[ OK ] SpoaTest.GlobalAffine (674 ms)
[ RUN ] SpoaTest.GlobalConvex
[ OK ] SpoaTest.GlobalConvex (1179 ms)
[ RUN ] SpoaTest.GlobalWithQualities
[ OK ] SpoaTest.GlobalWithQualities (513 ms)
[ RUN ] SpoaTest.GlobalAffineWithQualities
[ OK ] SpoaTest.GlobalAffineWithQualities (672 ms)
[ RUN ] SpoaTest.GlobalConvexWithQualities
[ OK ] SpoaTest.GlobalConvexWithQualities (1178 ms)
[ RUN ] SpoaTest.SemiGlobal
[ OK ] SpoaTest.SemiGlobal (512 ms)
[ RUN ] SpoaTest.SemiGlobalAffine
[ OK ] SpoaTest.SemiGlobalAffine (666 ms)
[ RUN ] SpoaTest.SemiGlobalConvex
[ OK ] SpoaTest.SemiGlobalConvex (1185 ms)
[ RUN ] SpoaTest.SemiGlobalWithQualities
[ OK ] SpoaTest.SemiGlobalWithQualities (527 ms)
[ RUN ] SpoaTest.SemiGlobalAffineWithQualities
[ OK ] SpoaTest.SemiGlobalAffineWithQualities (671 ms)
[ RUN ] SpoaTest.SemiGlobalConvexWithQualities
[ OK ] SpoaTest.SemiGlobalConvexWithQualities (1193 ms)
[----------] 19 tests from SpoaTest (15739 ms total)
[----------] Global test environment tear-down
[==========] 22 tests from 2 test suites ran. (15739 ms total)
[ PASSED ] 22 tests.
`find . -name spoa | grep bin` test/data/sample.fastq.gz
>Consensus LN:i:495
AATGATGCGCTTTGTTGGCGCGGTGGCTTGATGCAGGGGCTAATCGACCTCTGGCAACCACTTTTCCATGACAGGAGTTGAATATGGCATTCAGTAATCCCTTCGATGATCCGCAGGGAGCGTTTTACATATTGCGCAATGCGCAGGGCAATTCAGTCTGTGGCCGCAACAATGCGTCTTACCGGCAGGCTGGGACATTGTGTGTCAGCCGCAGTCACAGGCGTCCTGCCAGCAGTGGCTGGAAGCCCACTGGCGTACTCTGACACCGACGAATTTTACCCAGTTGCAGGAGGCACAATGAGCCAGCATTTACCTTTGGTCGCCGCACAGCCCGGCATCTGGATGGCAGAAAAACTGTCAGAATTACCCTCCGCCTGGAGCGTGGCGCATTACGTTGAGTTAACCGGAGAGGTTGATTCGCCATTACTGGCCCGCGCGGTGGTTGCCGGACTAGCGCAAGCAGATACGCTTTACACGCGCAACCAAGGATTTCGG
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--no-parallel
dh_prep -a -O--no-parallel
dh_auto_install -a -O--no-parallel
cd obj-arm-linux-gnueabihf && make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so.7.0.0
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa_static.a
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/alignment_engine.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/graph.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/spoa.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/version.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaTargets.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaTargets-release.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaConfig.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaConfigVersion.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/bin/spoa
-- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/bin/spoa" to ""
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--exclude-a \
--movedev debian/tmp/usr/include/spoa usr/include \
--movedev debian/tmp/usr/lib/arm-linux-gnueabihf/cmake /usr/lib/arm-linux-gnueabihf \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libspoa-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libspoa7.0.0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so debian/libspoa-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so.7.0.0 debian/libspoa7.0.0/usr/lib/arm-linux-gnueabihf
PKGDEV=libspoa-dev
PKGSHL=libspoa7.0.0
install -d -m 755 debian/libspoa-dev/usr/include
mv debian/tmp/usr/include/spoa debian/libspoa-dev/usr/include
install -d -m 755 debian/libspoa-dev//usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libspoa-dev//usr/lib/arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--no-parallel
dh_installchangelogs -a -O--no-parallel
dh_installexamples -a -O--no-parallel
dh_installman -a -O--no-parallel
dh_installsystemduser -a -O--no-parallel
dh_perl -a -O--no-parallel
dh_link -a -O--no-parallel
dh_strip_nondeterminism -a -O--no-parallel
dh_compress -a -O--no-parallel
dh_fixperms -a -O--no-parallel
dh_missing -a -O--no-parallel
dh_dwz -a -O--no-parallel
dh_strip -a -O--no-parallel
dh_makeshlibs -a -O--no-parallel
dh_shlibdeps -a -O--no-parallel
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-armhf.so.3
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-armhf.so.3
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/spoa/usr/bin/spoa was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a -O--no-parallel
dh_gencontrol -a -O--no-parallel
dpkg-gencontrol: warning: Depends field of package libspoa-dev: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -a -O--no-parallel
dh_builddeb -a -O--no-parallel
dpkg-deb: building package 'spoa' in '../spoa_4.1.4-2_armhf.deb'.
dpkg-deb: building package 'libspoa-dev' in '../libspoa-dev_4.1.4-2_armhf.deb'.
dpkg-deb: building package 'libspoa7.0.0' in '../libspoa7.0.0_4.1.4-2_armhf.deb'.
dpkg-deb: building package 'spoa-dbgsym' in '../spoa-dbgsym_4.1.4-2_armhf.deb'.
dpkg-deb: building package 'libspoa7.0.0-dbgsym' in '../libspoa7.0.0-dbgsym_4.1.4-2_armhf.deb'.
dpkg-genbuildinfo --build=any -O../spoa_4.1.4-2_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../spoa_4.1.4-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-07-28T23:50:10Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
spoa_4.1.4-2_armhf.changes:
---------------------------
Format: 1.8
Date: Wed, 24 Jul 2024 21:59:08 +0200
Source: spoa
Binary: libspoa-dev libspoa7.0.0 libspoa7.0.0-dbgsym spoa spoa-dbgsym
Architecture: armhf
Version: 4.1.4-2
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
libspoa-dev - SIMD partial order alignment library (development files)
libspoa7.0.0 - SIMD partial order alignment library
spoa - SIMD partial order alignment tool
Closes: 1075532
Changes:
spoa (4.1.4-2) unstable; urgency=medium
.
* d/libspoa7.0.0.symbols.amd64: mark some compiler symbols as optional.
(Closes: #1075532)
* d/control: add myself to uploaders.
* d/control: declare compliance to standards version 4.7.0.
Checksums-Sha1:
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: spoa
Binary: libspoa-dev libspoa7.0.0 libspoa7.0.0-dbgsym spoa spoa-dbgsym
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sun, 28 Jul 2024 23:50:09 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
adduser (= 3.137),
apt (= 2.9.6),
autoconf (= 2.71-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.22.5-1),
autotools-dev (= 20220109.1),
base-files (= 13.3+rpi1),
base-passwd (= 3.6.4),
bash (= 5.2.21-2.1),
binutils (= 2.41-6+rpi1+b1),
binutils-arm-linux-gnueabihf (= 2.41-6+rpi1+b1),
binutils-common (= 2.41-6+rpi1+b1),
bsdextrautils (= 2.40.2-1),
bsdutils (= 1:2.40.2-1),
build-essential (= 12.10),
bzip2 (= 1.0.8-5.1),
cmake (= 3.29.6-1),
cmake-data (= 3.29.6-1),
coreutils (= 9.4-3.1),
cpp (= 4:13.2.0-1+rpi1),
cpp-12 (= 12.4.0-1+rpi1),
cpp-13 (= 13.3.0-1+rpi1),
cpp-13-arm-linux-gnueabihf (= 13.3.0-1+rpi1),
d-shlibs (= 0.106),
dash (= 0.5.12-9),
debconf (= 1.5.87),
debhelper (= 13.16),
debianutils (= 5.20),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.14.0-1),
diffutils (= 1:3.10-1),
dirmngr (= 2.2.43-7),
dpkg (= 1.22.6+rpi1),
dpkg-dev (= 1.22.6+rpi1),
dwz (= 0.15-1+b2),
file (= 1:5.45-3),
findutils (= 4.10.0-2),
g++ (= 4:13.2.0-1+rpi1),
g++-13 (= 13.3.0-1+rpi1),
g++-13-arm-linux-gnueabihf (= 13.3.0-1+rpi1),
gcc (= 4:13.2.0-1+rpi1),
gcc-12 (= 12.4.0-1+rpi1),
gcc-12-base (= 12.4.0-1+rpi1),
gcc-13 (= 13.3.0-1+rpi1),
gcc-13-arm-linux-gnueabihf (= 13.3.0-1+rpi1),
gcc-13-base (= 13.3.0-1+rpi1),
gcc-14-base (= 14-20240221-2.1+rpi1),
gettext (= 0.22.5-1),
gettext-base (= 0.22.5-1),
gnupg (= 2.2.43-7),
gnupg-l10n (= 2.2.43-7),
googletest (= 1.14.0-1+rpi1),
gpg (= 2.2.43-7),
gpg-agent (= 2.2.43-7),
gpgconf (= 2.2.43-7),
gpgsm (= 2.2.43-7),
gpgv (= 2.2.43-7),
grep (= 3.11-4),
groff-base (= 1.23.0-5),
gzip (= 1.12-1.1),
hostname (= 3.23+nmu2),
init-system-helpers (= 1.66),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-2+rpi1),
libapt-pkg6.0t64 (= 2.9.6),
libarchive-zip-perl (= 1.68-1),
libarchive13t64 (= 3.7.2-2.1),
libasan8 (= 14-20240221-2.1+rpi1),
libassuan0 (= 2.5.6-1),
libatomic1 (= 14-20240221-2.1+rpi1),
libattr1 (= 1:2.5.2-1),
libaudit-common (= 1:3.1.2-4),
libaudit1 (= 1:3.1.2-4),
libbinutils (= 2.41-6+rpi1+b1),
libbioparser-dev (= 3.1.0-1),
libbiosoup-dev (= 0.11.0-2),
libblkid1 (= 2.40.2-1),
libbrotli1 (= 1.1.0-2+b1),
libbsd0 (= 0.12.2-1),
libbz2-1.0 (= 1.0.8-5.1),
libc-bin (= 2.38-13+rpi1),
libc-dev-bin (= 2.38-13+rpi1),
libc6 (= 2.38-13+rpi1),
libc6-dev (= 2.38-13+rpi1),
libcap-ng0 (= 0.8.5-1),
libcap2 (= 1:2.66-5),
libcc1-0 (= 14-20240221-2.1+rpi1),
libcereal-dev (= 1.3.2+dfsg-4+rpi1),
libcom-err2 (= 1.47.1-1),
libcrypt-dev (= 1:4.4.36-4),
libcrypt1 (= 1:4.4.36-4),
libctf-nobfd0 (= 2.41-6+rpi1+b1),
libctf0 (= 2.41-6+rpi1+b1),
libcurl4t64 (= 8.8.0-4+rpi1),
libdb5.3t64 (= 5.3.28+dfsg2-7),
libdebconfclient0 (= 0.272),
libdebhelper-perl (= 13.16),
libdpkg-perl (= 1.22.6+rpi1),
libelf1t64 (= 0.191-1+rpi1),
libexpat1 (= 2.6.2-1),
libffi8 (= 3.4.6-1),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libgcc-12-dev (= 12.4.0-1+rpi1),
libgcc-13-dev (= 13.3.0-1+rpi1),
libgcc-s1 (= 14-20240221-2.1+rpi1),
libgcrypt20 (= 1.11.0-2),
libgdbm-compat4t64 (= 1.23-6),
libgdbm6t64 (= 1.23-6),
libgmp10 (= 2:6.3.0+dfsg-2),
libgnutls30t64 (= 3.8.6-2),
libgomp1 (= 14-20240221-2.1+rpi1),
libgpg-error0 (= 1.49-2),
libgssapi-krb5-2 (= 1.21.2-1),
libgtest-dev (= 1.14.0-1+rpi1),
libhogweed6t64 (= 3.10-1),
libicu72 (= 72.1-5),
libidn2-0 (= 2.3.7-2),
libisl23 (= 0.26-3),
libjansson4 (= 2.14-2),
libjsoncpp25 (= 1.9.5-6),
libk5crypto3 (= 1.21.2-1),
libkeyutils1 (= 1.6.3-3),
libkrb5-3 (= 1.21.2-1),
libkrb5support0 (= 1.21.2-1),
libksba8 (= 1.6.7-2),
libldap-2.5-0 (= 2.5.18+dfsg-2),
liblz4-1 (= 1.9.4-2+rpi1),
liblzma5 (= 5.6.2-2),
libmagic-mgc (= 1:5.45-3),
libmagic1t64 (= 1:5.45-3),
libmd0 (= 1.1.0-2),
libmount1 (= 2.40.2-1),
libmpc3 (= 1.3.1-1),
libmpfr6 (= 4.2.1-1),
libncursesw6 (= 6.5-2),
libnettle8t64 (= 3.10-1),
libnghttp2-14 (= 1.62.1-2),
libnpth0t64 (= 1.6-3.1),
libp11-kit0 (= 0.25.5-2),
libpam-modules (= 1.5.3-7),
libpam-modules-bin (= 1.5.3-7),
libpam-runtime (= 1.5.3-7),
libpam0g (= 1.5.3-7),
libpcre2-8-0 (= 10.42-4+b1),
libperl5.38t64 (= 5.38.2-5),
libpipeline1 (= 1.5.7-2),
libproc2-0 (= 2:4.0.4-5),
libpsl5t64 (= 0.21.2-1.1),
libreadline8t64 (= 8.2-4),
librhash0 (= 1.4.3-3),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4),
libsasl2-2 (= 2.1.28+dfsg1-6),
libsasl2-modules-db (= 2.1.28+dfsg1-6),
libseccomp2 (= 2.5.5-1+rpi1+b1),
libselinux1 (= 3.5-2+b2),
libsemanage-common (= 3.5-1),
libsemanage2 (= 3.5-1+b1),
libsepol2 (= 3.5-2+b1),
libsframe1 (= 2.41-6+rpi1+b1),
libsimde-dev (= 0.8.2-1),
libsmartcols1 (= 2.40.2-1),
libsqlite3-0 (= 3.46.0-1),
libssh2-1t64 (= 1.11.0-4.1+rpi1),
libssl3t64 (= 3.2.2-1),
libstdc++-13-dev (= 13.3.0-1+rpi1),
libstdc++6 (= 14-20240221-2.1+rpi1),
libsystemd0 (= 255.3-1+rpi1+b1),
libtasn1-6 (= 4.19.0-3+b2),
libtinfo6 (= 6.5-2),
libtool (= 2.4.7-7),
libubsan1 (= 14-20240221-2.1+rpi1),
libuchardet0 (= 0.0.8-1),
libudev1 (= 255.3-1+rpi1+b1),
libunistring5 (= 1.2-1),
libuuid1 (= 2.40.2-1),
libuv1t64 (= 1.48.0-5+rpi1),
libxml2 (= 2.9.14+dfsg-1.3+b4),
libxxhash0 (= 0.8.2-2+b1),
libzstd1 (= 1.5.6+dfsg-1),
linux-libc-dev (= 6.5.6-1+rpi1+b3),
login (= 1:4.15.3-2),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.12.1-2),
mawk (= 1.3.4.20240622-2),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2),
passwd (= 1:4.15.3-2),
patch (= 2.7.6-7),
perl (= 5.38.2-5),
perl-base (= 5.38.2-5),
perl-modules-5.38 (= 5.38.2-5),
pinentry-curses (= 1.2.1-3+b1),
po-debconf (= 1.0.21+nmu1),
procps (= 2:4.0.4-5),
rapidjson-dev (= 1.1.0+dfsg2-7.2),
raspbian-archive-keyring (= 20120528.2),
readline-common (= 8.2-4),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-2),
sensible-utils (= 0.0.24),
sysvinit-utils (= 3.09-2),
tar (= 1.35+dfsg-3),
usr-is-merged (= 39),
util-linux (= 2.40.2-1),
xz-utils (= 5.6.2-2),
zlib1g (= 1:1.3.dfsg+really1.3.1-1),
zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
LC_COLLATE="C.UTF-8"
SOURCE_DATE_EPOCH="1721851148"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libspoa-dev_4.1.4-2_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 9520 bytes: control archive=1100 bytes.
816 bytes, 20 lines control
783 bytes, 10 lines md5sums
Package: libspoa-dev
Source: spoa
Version: 4.1.4-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 42
Depends: libspoa7.0.0 (= 4.1.4-2), libcereal-dev
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/rvaser/spoa
Description: SIMD partial order alignment library (development files)
Spoa (SIMD POA) is a c++ implementation of the partial order alignment
(POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which
is used to generate consensus sequences (as described in
10.1093/bioinformatics/btg109). It supports three alignment modes: local
(Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment
(overlap).
.
This package contains the static library and the header files.
drwxr-xr-x root/root 0 2024-07-24 19:59 ./
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/include/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/include/spoa/
-rw-r--r-- root/root 2195 2023-11-30 09:33 ./usr/include/spoa/alignment_engine.hpp
-rw-r--r-- root/root 7825 2023-11-30 09:33 ./usr/include/spoa/graph.hpp
-rw-r--r-- root/root 186 2023-11-30 09:33 ./usr/include/spoa/spoa.hpp
-rw-r--r-- root/root 201 2023-11-30 09:33 ./usr/include/spoa/version.hpp
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/lib/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/lib/arm-linux-gnueabihf/cmake/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/lib/arm-linux-gnueabihf/cmake/spoa/
-rw-r--r-- root/root 1478 2024-07-24 19:59 ./usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaConfig.cmake
-rw-r--r-- root/root 2762 2024-07-24 19:59 ./usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaConfigVersion.cmake
-rw-r--r-- root/root 1398 2024-07-24 19:59 ./usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaTargets-release.cmake
-rw-r--r-- root/root 4844 2024-07-24 19:59 ./usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaTargets.cmake
lrwxrwxrwx root/root 0 2024-07-24 19:59 ./usr/lib/arm-linux-gnueabihf/libspoa.so -> libspoa.so.7.0.0
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/share/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/share/doc/libspoa-dev/
-rw-r--r-- root/root 2005 2024-07-24 19:59 ./usr/share/doc/libspoa-dev/changelog.Debian.gz
-rw-r--r-- root/root 1353 2024-07-24 19:59 ./usr/share/doc/libspoa-dev/copyright
libspoa7.0.0-dbgsym_4.1.4-2_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 657220 bytes: control archive=556 bytes.
399 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libspoa7.0.0-dbgsym
Source: spoa
Version: 4.1.4-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 666
Depends: libspoa7.0.0 (= 4.1.4-2)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libspoa7.0.0
Build-Ids: 6c8c9926b91befb52a43bc85547a3e32132e2058
drwxr-xr-x root/root 0 2024-07-24 19:59 ./
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/lib/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/lib/debug/.build-id/6c/
-rw-r--r-- root/root 671596 2024-07-24 19:59 ./usr/lib/debug/.build-id/6c/8c9926b91befb52a43bc85547a3e32132e2058.debug
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/share/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-07-24 19:59 ./usr/share/doc/libspoa7.0.0-dbgsym -> libspoa7.0.0
libspoa7.0.0_4.1.4-2_armhf.deb
------------------------------
new Debian package, version 2.0.
size 55364 bytes: control archive=980 bytes.
790 bytes, 20 lines control
231 bytes, 3 lines md5sums
38 bytes, 1 lines shlibs
66 bytes, 2 lines triggers
Package: libspoa7.0.0
Source: spoa
Version: 4.1.4-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 152
Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/rvaser/spoa
Description: SIMD partial order alignment library
Spoa (SIMD POA) is a c++ implementation of the partial order alignment
(POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which
is used to generate consensus sequences (as described in
10.1093/bioinformatics/btg109). It supports three alignment modes: local
(Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment
(overlap).
.
This package contains the shared library.
drwxr-xr-x root/root 0 2024-07-24 19:59 ./
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/lib/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/lib/arm-linux-gnueabihf/
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drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/share/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/share/doc/libspoa7.0.0/
-rw-r--r-- root/root 2005 2024-07-24 19:59 ./usr/share/doc/libspoa7.0.0/changelog.Debian.gz
-rw-r--r-- root/root 1353 2024-07-24 19:59 ./usr/share/doc/libspoa7.0.0/copyright
spoa-dbgsym_4.1.4-2_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 237276 bytes: control archive=532 bytes.
358 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: spoa-dbgsym
Source: spoa
Version: 4.1.4-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 251
Depends: spoa (= 4.1.4-2)
Section: debug
Priority: optional
Description: debug symbols for spoa
Build-Ids: b2c365dc346019ff46d5ad9b183c0911d3c07b5c
drwxr-xr-x root/root 0 2024-07-24 19:59 ./
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/lib/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/lib/debug/.build-id/b2/
-rw-r--r-- root/root 246244 2024-07-24 19:59 ./usr/lib/debug/.build-id/b2/c365dc346019ff46d5ad9b183c0911d3c07b5c.debug
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/share/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-07-24 19:59 ./usr/share/doc/spoa-dbgsym -> spoa
spoa_4.1.4-2_armhf.deb
----------------------
new Debian package, version 2.0.
size 34748 bytes: control archive=940 bytes.
754 bytes, 16 lines control
391 bytes, 6 lines md5sums
Package: spoa
Version: 4.1.4-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 69
Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.5), libspoa7.0.0 (>= 4.1.4), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.3.3)
Section: science
Priority: optional
Homepage: https://github.com/rvaser/spoa
Description: SIMD partial order alignment tool
Spoa (SIMD POA) is a c++ implementation of the partial order alignment
(POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which
is used to generate consensus sequences (as described in
10.1093/bioinformatics/btg109). It supports three alignment modes: local
(Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment
(overlap).
drwxr-xr-x root/root 0 2024-07-24 19:59 ./
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/bin/
-rwxr-xr-x root/root 38536 2024-07-24 19:59 ./usr/bin/spoa
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/share/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/share/doc/spoa/
-rw-r--r-- root/root 2004 2024-07-24 19:59 ./usr/share/doc/spoa/changelog.Debian.gz
-rw-r--r-- root/root 1353 2024-07-24 19:59 ./usr/share/doc/spoa/copyright
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/share/doc/spoa/examples/
-rw-r--r-- root/root 15064 2024-07-24 19:59 ./usr/share/doc/spoa/examples/sample.fastq.gz
-rw-r--r-- root/root 294 2024-07-24 19:59 ./usr/share/doc/spoa/run-unit-test
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/share/man/
drwxr-xr-x root/root 0 2024-07-24 19:59 ./usr/share/man/man1/
-rw-r--r-- root/root 700 2024-07-24 19:59 ./usr/share/man/man1/spoa.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 21120
Build-Time: 57
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 37
Job: spoa_4.1.4-2
Machine Architecture: arm64
Package: spoa
Package-Time: 102
Source-Version: 4.1.4-2
Space: 21120
Status: successful
Version: 4.1.4-2
--------------------------------------------------------------------------------
Finished at 2024-07-28T23:50:10Z
Build needed 00:01:42, 21120k disk space