Raspbian Package Auto-Building

Build log for spoa (4.1.4-1) on armhf

spoa4.1.4-1armhf → 2024-05-19 22:04:25

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02

+==============================================================================+
| spoa 4.1.4-1 (armhf)                         Sun, 19 May 2024 21:58:04 +0000 |
+==============================================================================+

Package: spoa
Version: 4.1.4-1
Source Version: 4.1.4-1
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-5d2b6ee7-3d91-4bcd-9514-1c953d18d685' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.6 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.2 MB]
Fetched 29.8 MB in 10s (3030 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'spoa' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/spoa.git
Please use:
git clone https://salsa.debian.org/med-team/spoa.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 58.4 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main spoa 4.1.4-1 (dsc) [2127 B]
Get:2 http://172.17.4.1/private trixie-staging/main spoa 4.1.4-1 (tar) [47.5 kB]
Get:3 http://172.17.4.1/private trixie-staging/main spoa 4.1.4-1 (diff) [8780 B]
Fetched 58.4 kB in 0s (1745 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/spoa-NcMFz9/spoa-4.1.4' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/spoa-NcMFz9' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-EmfDOb/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-EmfDOb/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-EmfDOb/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-EmfDOb/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-EmfDOb/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-EmfDOb/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-EmfDOb/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-EmfDOb/apt_archive ./ Packages [430 B]
Fetched 2106 B in 0s (9348 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libalgorithm-diff-perl libalgorithm-merge-perl
  libarchive-cpio-perl libk5crypto3 libltdl-dev libltdl7 libmail-sendmail-perl
  libnumber-compare-perl libsys-hostname-long-perl libtext-glob-perl netbase
  sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-EmfDOb/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (76.8 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14790 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev, libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev
Filtered Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev, libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev
dpkg-deb: building package 'sbuild-build-depends-spoa-dummy' in '/<<BUILDDIR>>/resolver-EmfDOb/apt_archive/sbuild-build-depends-spoa-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-spoa-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-EmfDOb/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-EmfDOb/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-EmfDOb/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-EmfDOb/apt_archive ./ Sources [559 B]
Get:5 copy:/<<BUILDDIR>>/resolver-EmfDOb/apt_archive ./ Packages [615 B]
Fetched 2507 B in 0s (12.7 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install spoa build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libalgorithm-diff-perl libalgorithm-merge-perl
  libarchive-cpio-perl libltdl-dev libltdl7 libmail-sendmail-perl
  libnumber-compare-perl libsys-hostname-long-perl libtext-glob-perl netbase
  sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  cmake cmake-data d-shlibs googletest libarchive13t64 libbioparser-dev
  libbiosoup-dev libbrotli1 libcereal-dev libcurl3t64-gnutls libexpat1
  libgssapi-krb5-2 libgtest-dev libjsoncpp25 libk5crypto3 libkrb5-3
  libkrb5support0 libnghttp2-14 libproc2-0 libpsl5t64 librhash0 librtmp1
  libsimde-dev libssh2-1t64 libuv1t64 procps rapidjson-dev zlib1g zlib1g-dev
Suggested packages:
  cmake-doc cmake-format elpa-cmake-mode ninja-build lrzip krb5-doc krb5-user
  rapidjson-doc
Recommended packages:
  ca-certificates publicsuffix libssl3 psmisc
The following NEW packages will be installed:
  cmake cmake-data d-shlibs googletest libarchive13t64 libbioparser-dev
  libbiosoup-dev libbrotli1 libcereal-dev libcurl3t64-gnutls libexpat1
  libgssapi-krb5-2 libgtest-dev libjsoncpp25 libkrb5-3 libnghttp2-14
  libproc2-0 libpsl5t64 librhash0 librtmp1 libsimde-dev libssh2-1t64 libuv1t64
  procps rapidjson-dev sbuild-build-depends-spoa-dummy zlib1g-dev
The following packages will be upgraded:
  libk5crypto3 libkrb5support0 zlib1g
3 upgraded, 27 newly installed, 0 to remove and 27 not upgraded.
Need to get 15.8 MB of archives.
After this operation, 64.8 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-EmfDOb/apt_archive ./ sbuild-build-depends-spoa-dummy 0.invalid.0 [900 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf zlib1g armhf 1:1.3.dfsg-3.1 [74.3 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libproc2-0 armhf 2:4.0.4-4 [54.8 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf procps armhf 2:4.0.4-4 [848 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libarchive13t64 armhf 3.7.2-2 [298 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libkrb5support0 armhf 1.20.1-6 [30.2 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libk5crypto3 armhf 1.20.1-6 [73.9 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libkrb5-3 armhf 1.20.1-6 [286 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf libgssapi-krb5-2 armhf 1.20.1-6 [111 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.61.0-1+b1 [62.9 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.7 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [52.5 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libssh2-1t64 armhf 1.11.0-4.1+rpi1 [197 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf libcurl3t64-gnutls armhf 8.7.1-5 [378 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.6.2-1 [80.9 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libjsoncpp25 armhf 1.9.5-6 [64.7 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf librhash0 armhf 1.4.3-3 [142 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf libuv1t64 armhf 1.48.0-1.1+rpi1 [133 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf cmake-data all 3.29.3-1+rpi1 [2167 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf cmake armhf 3.29.3-1+rpi1 [7926 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf d-shlibs all 0.106 [10.9 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf googletest all 1.14.0-1+rpi1 [512 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libbiosoup-dev all 0.11.0-2 [8000 B]
Get:25 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1 [903 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libbioparser-dev all 3.1.0-1 [9108 B]
Get:27 http://172.17.4.1/private trixie-staging/main armhf rapidjson-dev all 1.1.0+dfsg2-7.2 [97.8 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libcereal-dev armhf 1.3.2+dfsg-4+rpi1 [221 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libgtest-dev armhf 1.14.0-1+rpi1 [236 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libsimde-dev all 0.8.2-1 [465 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 15.8 MB in 2s (8596 kB/s)
(Reading database ... 14790 files and directories currently installed.)
Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1_armhf.deb ...
Unpacking zlib1g:armhf (1:1.3.dfsg-3.1) over (1:1.3.dfsg-3) ...
Setting up zlib1g:armhf (1:1.3.dfsg-3.1) ...
Selecting previously unselected package libproc2-0:armhf.
(Reading database ... 14790 files and directories currently installed.)
Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_armhf.deb ...
Unpacking libproc2-0:armhf (2:4.0.4-4) ...
Selecting previously unselected package procps.
Preparing to unpack .../01-procps_2%3a4.0.4-4_armhf.deb ...
Unpacking procps (2:4.0.4-4) ...
Selecting previously unselected package libarchive13t64:armhf.
Preparing to unpack .../02-libarchive13t64_3.7.2-2_armhf.deb ...
Unpacking libarchive13t64:armhf (3.7.2-2) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../03-libbrotli1_1.1.0-2_armhf.deb ...
Unpacking libbrotli1:armhf (1.1.0-2) ...
Preparing to unpack .../04-libkrb5support0_1.20.1-6_armhf.deb ...
Unpacking libkrb5support0:armhf (1.20.1-6) over (1.20.1-5) ...
Preparing to unpack .../05-libk5crypto3_1.20.1-6_armhf.deb ...
Unpacking libk5crypto3:armhf (1.20.1-6) over (1.20.1-5) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../06-libkrb5-3_1.20.1-6_armhf.deb ...
Unpacking libkrb5-3:armhf (1.20.1-6) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../07-libgssapi-krb5-2_1.20.1-6_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.20.1-6) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../08-libnghttp2-14_1.61.0-1+b1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.61.0-1+b1) ...
Selecting previously unselected package libpsl5t64:armhf.
Preparing to unpack .../09-libpsl5t64_0.21.2-1.1_armhf.deb ...
Unpacking libpsl5t64:armhf (0.21.2-1.1) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../10-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b4) ...
Selecting previously unselected package libssh2-1t64:armhf.
Preparing to unpack .../11-libssh2-1t64_1.11.0-4.1+rpi1_armhf.deb ...
Unpacking libssh2-1t64:armhf (1.11.0-4.1+rpi1) ...
Selecting previously unselected package libcurl3t64-gnutls:armhf.
Preparing to unpack .../12-libcurl3t64-gnutls_8.7.1-5_armhf.deb ...
Unpacking libcurl3t64-gnutls:armhf (8.7.1-5) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../13-libexpat1_2.6.2-1_armhf.deb ...
Unpacking libexpat1:armhf (2.6.2-1) ...
Selecting previously unselected package libjsoncpp25:armhf.
Preparing to unpack .../14-libjsoncpp25_1.9.5-6_armhf.deb ...
Unpacking libjsoncpp25:armhf (1.9.5-6) ...
Selecting previously unselected package librhash0:armhf.
Preparing to unpack .../15-librhash0_1.4.3-3_armhf.deb ...
Unpacking librhash0:armhf (1.4.3-3) ...
Selecting previously unselected package libuv1t64:armhf.
Preparing to unpack .../16-libuv1t64_1.48.0-1.1+rpi1_armhf.deb ...
Unpacking libuv1t64:armhf (1.48.0-1.1+rpi1) ...
Selecting previously unselected package cmake-data.
Preparing to unpack .../17-cmake-data_3.29.3-1+rpi1_all.deb ...
Unpacking cmake-data (3.29.3-1+rpi1) ...
Selecting previously unselected package cmake.
Preparing to unpack .../18-cmake_3.29.3-1+rpi1_armhf.deb ...
Unpacking cmake (3.29.3-1+rpi1) ...
Selecting previously unselected package d-shlibs.
Preparing to unpack .../19-d-shlibs_0.106_all.deb ...
Unpacking d-shlibs (0.106) ...
Selecting previously unselected package googletest.
Preparing to unpack .../20-googletest_1.14.0-1+rpi1_all.deb ...
Unpacking googletest (1.14.0-1+rpi1) ...
Selecting previously unselected package libbiosoup-dev.
Preparing to unpack .../21-libbiosoup-dev_0.11.0-2_all.deb ...
Unpacking libbiosoup-dev (0.11.0-2) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../22-zlib1g-dev_1%3a1.3.dfsg-3.1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.3.dfsg-3.1) ...
Selecting previously unselected package libbioparser-dev.
Preparing to unpack .../23-libbioparser-dev_3.1.0-1_all.deb ...
Unpacking libbioparser-dev (3.1.0-1) ...
Selecting previously unselected package rapidjson-dev.
Preparing to unpack .../24-rapidjson-dev_1.1.0+dfsg2-7.2_all.deb ...
Unpacking rapidjson-dev (1.1.0+dfsg2-7.2) ...
Selecting previously unselected package libcereal-dev.
Preparing to unpack .../25-libcereal-dev_1.3.2+dfsg-4+rpi1_armhf.deb ...
Unpacking libcereal-dev (1.3.2+dfsg-4+rpi1) ...
Selecting previously unselected package libgtest-dev:armhf.
Preparing to unpack .../26-libgtest-dev_1.14.0-1+rpi1_armhf.deb ...
Unpacking libgtest-dev:armhf (1.14.0-1+rpi1) ...
Selecting previously unselected package libsimde-dev.
Preparing to unpack .../27-libsimde-dev_0.8.2-1_all.deb ...
Unpacking libsimde-dev (0.8.2-1) ...
Selecting previously unselected package sbuild-build-depends-spoa-dummy.
Preparing to unpack .../28-sbuild-build-depends-spoa-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-spoa-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.6.2-1) ...
Setting up libsimde-dev (0.8.2-1) ...
Setting up libbrotli1:armhf (1.1.0-2) ...
Setting up libuv1t64:armhf (1.48.0-1.1+rpi1) ...
Setting up libpsl5t64:armhf (0.21.2-1.1) ...
Setting up libnghttp2-14:armhf (1.61.0-1+b1) ...
Setting up googletest (1.14.0-1+rpi1) ...
Setting up rapidjson-dev (1.1.0+dfsg2-7.2) ...
Setting up libkrb5support0:armhf (1.20.1-6) ...
Setting up libbiosoup-dev (0.11.0-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b4) ...
Setting up libproc2-0:armhf (2:4.0.4-4) ...
Setting up libjsoncpp25:armhf (1.9.5-6) ...
Setting up d-shlibs (0.106) ...
Setting up libk5crypto3:armhf (1.20.1-6) ...
Setting up zlib1g-dev:armhf (1:1.3.dfsg-3.1) ...
Setting up libbioparser-dev (3.1.0-1) ...
Setting up librhash0:armhf (1.4.3-3) ...
Setting up procps (2:4.0.4-4) ...
Setting up cmake-data (3.29.3-1+rpi1) ...
Setting up libkrb5-3:armhf (1.20.1-6) ...
Setting up libssh2-1t64:armhf (1.11.0-4.1+rpi1) ...
Setting up libarchive13t64:armhf (3.7.2-2) ...
Setting up libgtest-dev:armhf (1.14.0-1+rpi1) ...
Setting up libcereal-dev (1.3.2+dfsg-4+rpi1) ...
Setting up libgssapi-krb5-2:armhf (1.20.1-6) ...
Setting up libcurl3t64-gnutls:armhf (8.7.1-5) ...
Setting up cmake (3.29.3-1+rpi1) ...
Setting up sbuild-build-depends-spoa-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.38-8+rpi1) ...
Processing triggers for man-db (2.12.1-1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 5.4.0-172-generic armhf (armv8l)
Toolchain package versions: binutils_2.41-6+rpi1+b1 dpkg-dev_1.22.5+rpi1 g++-12_12.3.0-14+rpi1 g++-13_13.2.0-16.1+rpi1 gcc-12_12.3.0-14+rpi1 gcc-13_13.2.0-16.1+rpi1 libc6-dev_2.38-8+rpi1 libstdc++-12-dev_12.3.0-14+rpi1 libstdc++-13-dev_13.2.0-16.1+rpi1 libstdc++6_14-20240221-2.1+rpi1 linux-libc-dev_6.5.6-1+rpi1+b1
Package versions: adduser_3.137 apt_2.9.2 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41-6+rpi1+b1 binutils-arm-linux-gnueabihf_2.41-6+rpi1+b1 binutils-common_2.41-6+rpi1+b1 bsdextrautils_2.40-8 bsdutils_1:2.40-8 build-essential_12.10 bzip2_1.0.8-5+b2 cmake_3.29.3-1+rpi1 cmake-data_3.29.3-1+rpi1 coreutils_9.4-3.1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-14+rpi1 cpp-13_13.2.0-16.1+rpi1 cpp-13-arm-linux-gnueabihf_13.2.0-16.1+rpi1 d-shlibs_0.106 dash_0.5.12-6 debconf_1.5.86 debhelper_13.15.3 debianutils_5.16 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-3 dpkg_1.22.5+rpi1 dpkg-dev_1.22.5+rpi1 dwz_0.15-1 e2fsprogs_1.47.1~rc2-1 fakeroot_1.33-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-14+rpi1 g++-13_13.2.0-16.1+rpi1 g++-13-arm-linux-gnueabihf_13.2.0-16.1+rpi1 gcc_4:13.2.0-1+rpi1 gcc-12_12.3.0-14+rpi1 gcc-12-base_12.3.0-14+rpi1 gcc-13_13.2.0-16.1+rpi1 gcc-13-arm-linux-gnueabihf_13.2.0-16.1+rpi1 gcc-13-base_13.2.0-16.1+rpi1 gcc-14-base_14-20240221-2.1+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gnupg_2.2.40-3 gnupg-l10n_2.2.40-3 gnupg-utils_2.2.40-3 googletest_1.14.0-1+rpi1 gpg_2.2.40-3 gpg-agent_2.2.40-3 gpg-wks-client_2.2.40-3 gpg-wks-server_2.2.40-3 gpgconf_2.2.40-3 gpgsm_2.2.40-3 gpgv_2.2.40-3 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20240117-1 krb5-locales_1.20.1-6 libacl1_2.3.2-2+rpi1 libalgorithm-diff-perl_1.201-1 libalgorithm-merge-perl_0.08-5 libapt-pkg6.0t64_2.9.2 libarchive-cpio-perl_0.10-3 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.2-2 libasan8_14-20240221-2.1+rpi1 libassuan0_2.5.6-1 libatomic1_14-20240221-2.1+rpi1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2 libaudit1_1:3.1.2-2 libbinutils_2.41-6+rpi1+b1 libbioparser-dev_3.1.0-1 libbiosoup-dev_0.11.0-2 libblkid1_2.40-8 libbrotli1_1.1.0-2 libbz2-1.0_1.0.8-5+b2 libc-bin_2.38-8+rpi1 libc-dev-bin_2.38-8+rpi1 libc6_2.38-8+rpi1 libc6-dev_2.38-8+rpi1 libcap-ng0_0.8.4-2 libcap2_1:2.66-5 libcap2-bin_1:2.66-5 libcc1-0_14-20240221-2.1+rpi1 libcereal-dev_1.3.2+dfsg-4+rpi1 libcom-err2_1.47.1~rc2-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.41-6+rpi1+b1 libctf0_2.41-6+rpi1+b1 libcurl3t64-gnutls_8.7.1-5 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.271 libdebhelper-perl_13.15.3 libdpkg-perl_1.22.5+rpi1 libelf1_0.188-2.1+rpi1 libexpat1_2.6.2-1 libext2fs2t64_1.47.1~rc2-1 libfakeroot_1.33-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.3.0-14+rpi1 libgcc-13-dev_13.2.0-16.1+rpi1 libgcc-s1_14-20240221-2.1+rpi1 libgcrypt20_1.10.3-2+b1 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgmp10_2:6.3.0+dfsg-2 libgnutls30t64_3.8.5-2 libgomp1_14-20240221-2.1+rpi1 libgpg-error0_1.47-3+b1 libgssapi-krb5-2_1.20.1-6 libgtest-dev_1.14.0-1+rpi1 libhogweed6t64_3.9.1-2.2 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libisl23_0.26-3 libjansson4_2.14-2 libjsoncpp25_1.9.5-6 libk5crypto3_1.20.1-6 libkeyutils1_1.6.3-3 libkrb5-3_1.20.1-6 libkrb5support0_1.20.1-6 libksba8_1.6.5-2 libldap-2.5-0_2.5.17+dfsg-1 libltdl-dev_2.4.7-7+b1 libltdl7_2.4.7-7+b1 liblz4-1_1.9.4-1+rpi1+b2 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmail-sendmail-perl_0.80-3 libmd0_1.1.0-2 libmount1_2.40-8 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncursesw6_6.5-2 libnettle8t64_3.9.1-2.2 libnghttp2-14_1.61.0-1+b1 libnpth0t64_1.6-3.1 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-4 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libpcre3_2:8.39-15 libperl5.38t64_5.38.2-4 libpipeline1_1.5.7-1 libproc2-0_2:4.0.4-4 libpsl5t64_0.21.2-1.1 libreadline8t64_8.2-4 librhash0_1.4.3-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1+rpi1 libselinux1_3.5-2+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol1_3.1-1 libsepol2_3.5-2+b1 libsframe1_2.41-6+rpi1+b1 libsimde-dev_0.8.2-1 libsmartcols1_2.40-8 libsqlite3-0_3.45.1-1 libss2_1.47.1~rc2-1 libssh2-1t64_1.11.0-4.1+rpi1 libssl1.1_1.1.1o-1 libssl3t64_3.2.1-3 libstdc++-12-dev_12.3.0-14+rpi1 libstdc++-13-dev_13.2.0-16.1+rpi1 libstdc++6_14-20240221-2.1+rpi1 libsub-override-perl_0.10-1 libsys-hostname-long-perl_1.5-3 libsystemd0_255.3-1+rpi1+b1 libtasn1-6_4.19.0-3+b2 libtext-glob-perl_0.11-3 libtinfo6_6.5-2 libtirpc-common_1.3.4+ds-1.3 libtool_2.4.7-7 libubsan1_14-20240221-2.1+rpi1 libuchardet0_0.0.8-1 libudev1_255.3-1+rpi1+b1 libunistring2_1.0-2 libunistring5_1.2-1 libuuid1_2.40-8 libuv1t64_1.48.0-1.1+rpi1 libxml2_2.9.14+dfsg-1.3+b4 libxxhash0_0.8.2-2+b1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1+b1 login_1:4.13+dfsg1-4 logsave_1.47.1~rc2-1 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-1 mawk_1.3.4.20240123-1 mount_2.40-8 nano_7.2-2 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 passwd_1:4.13+dfsg1-4 patch_2.7.6-7 perl_5.38.2-4 perl-base_5.38.2-4 perl-modules-5.38_5.38.2-4 pinentry-curses_1.2.1-3 po-debconf_1.0.21+nmu1 procps_2:4.0.4-4 rapidjson-dev_1.1.0+dfsg2-7.2 raspbian-archive-keyring_20120528.2 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-spoa-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sgml-base_1.31 sysvinit-utils_3.08-6 tar_1.35+dfsg-3 tzdata_2024a-4 usr-is-merged_39 util-linux_2.40-8 util-linux-extra_2.40-8 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3.1 zlib1g-dev_1:1.3.dfsg-3.1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: Signature made Thu Mar 21 11:56:06 2024 UTC
gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./spoa_4.1.4-1.dsc: no acceptable signature found
dpkg-source: info: extracting spoa in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking spoa_4.1.4.orig.tar.gz
dpkg-source: info: unpacking spoa_4.1.4-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-ftbfs-gcc-10.patch
dpkg-source: info: applying use_debian_packaged_libs.patch
dpkg-source: info: applying shared_and_static.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-5d2b6ee7-3d91-4bcd-9514-1c953d18d685
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package spoa
dpkg-buildpackage: info: source version 4.1.4-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --no-parallel
   dh_autoreconf_clean -O--no-parallel
   dh_clean -O--no-parallel
 debian/rules binary-arch
dh binary-arch --no-parallel
   dh_update_autotools_config -a -O--no-parallel
   dh_autoreconf -a -O--no-parallel
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/arm-linux-gnueabihf/cmake/CpuFeatures
	cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/arm-linux-gnueabihf/cmake/CpuFeatures ..
-- The CXX compiler identification is GNU 13.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done (1.6s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    spoa_build_executable


-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_build -a -O--no-parallel
	cd obj-arm-linux-gnueabihf && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make  -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/spoa.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make  -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[  7%] Building CXX object CMakeFiles/spoa.dir/src/alignment_engine.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -c /<<PKGBUILDDIR>>/src/alignment_engine.cpp
[ 14%] Building CXX object CMakeFiles/spoa.dir/src/graph.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/graph.cpp.o -MF CMakeFiles/spoa.dir/src/graph.cpp.o.d -o CMakeFiles/spoa.dir/src/graph.cpp.o -c /<<PKGBUILDDIR>>/src/graph.cpp
[ 21%] Building CXX object CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -MF CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o.d -o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -c /<<PKGBUILDDIR>>/src/simd_alignment_engine_dispatcher.cpp
[ 28%] Building CXX object CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -c /<<PKGBUILDDIR>>/src/sisd_alignment_engine.cpp
[ 35%] Building CXX object CMakeFiles/spoa.dir/src/version.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/version.cpp.o -MF CMakeFiles/spoa.dir/src/version.cpp.o.d -o CMakeFiles/spoa.dir/src/version.cpp.o -c /<<PKGBUILDDIR>>/src/version.cpp
[ 42%] Linking CXX shared library lib/libspoa.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libspoa.so.7.0.0 -o lib/libspoa.so.7.0.0 CMakeFiles/spoa.dir/src/alignment_engine.cpp.o CMakeFiles/spoa.dir/src/graph.cpp.o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o CMakeFiles/spoa.dir/src/version.cpp.o
/usr/bin/cmake -E cmake_symlink_library lib/libspoa.so.7.0.0 lib/libspoa.so.7.0.0 lib/libspoa.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 42%] Built target spoa
make  -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/spoa_static.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make  -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 50%] Building CXX object CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -c /<<PKGBUILDDIR>>/src/alignment_engine.cpp
[ 57%] Building CXX object CMakeFiles/spoa_static.dir/src/graph.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/graph.cpp.o -MF CMakeFiles/spoa_static.dir/src/graph.cpp.o.d -o CMakeFiles/spoa_static.dir/src/graph.cpp.o -c /<<PKGBUILDDIR>>/src/graph.cpp
[ 64%] Building CXX object CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -c /<<PKGBUILDDIR>>/src/sisd_alignment_engine.cpp
[ 71%] Linking CXX static library lib/libspoa_static.a
/usr/bin/cmake -P CMakeFiles/spoa_static.dir/cmake_clean_target.cmake
/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_static.dir/link.txt --verbose=1
/usr/bin/ar qc lib/libspoa_static.a CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/graph.cpp.o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o
/usr/bin/ranlib lib/libspoa_static.a
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[ 71%] Built target spoa_static
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/spoa_exe.dir/DependInfo.cmake "--color="
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[ 78%] Building CXX object CMakeFiles/spoa_exe.dir/src/main.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_exe.dir/src/main.cpp.o -MF CMakeFiles/spoa_exe.dir/src/main.cpp.o.d -o CMakeFiles/spoa_exe.dir/src/main.cpp.o -c /<<PKGBUILDDIR>>/src/main.cpp
[ 85%] Linking CXX executable bin/spoa
/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_exe.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/spoa_exe.dir/src/main.cpp.o -o bin/spoa  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/lib: lib/libspoa.so.7.0.0 -lz
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 85%] Built target spoa_exe
make  -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/spoa_test.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 92%] Building CXX object CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -MF CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o.d -o CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -c /<<PKGBUILDDIR>>/test/spoa_test.cpp
[100%] Linking CXX executable bin/spoa_test
/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -o bin/spoa_test  -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/lib lib/libspoa.so.7.0.0 -lz /usr/lib/arm-linux-gnueabihf/libgtest_main.a /usr/lib/arm-linux-gnueabihf/libgtest.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target spoa_test
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
`find . -name spoa_test`
Running main() from ./googletest/src/gtest_main.cc
[==========] Running 22 tests from 2 test suites.
[----------] Global test environment set-up.
[----------] 3 tests from SpoaAlignmentTest
[ RUN      ] SpoaAlignmentTest.TypeError
[       OK ] SpoaAlignmentTest.TypeError (0 ms)
[ RUN      ] SpoaAlignmentTest.EmptyInput
[       OK ] SpoaAlignmentTest.EmptyInput (0 ms)
[ RUN      ] SpoaAlignmentTest.LargeInput
[       OK ] SpoaAlignmentTest.LargeInput (0 ms)
[----------] 3 tests from SpoaAlignmentTest (0 ms total)

[----------] 19 tests from SpoaTest
[ RUN      ] SpoaTest.Clear
[       OK ] SpoaTest.Clear (2758 ms)
[ RUN      ] SpoaTest.Local
[       OK ] SpoaTest.Local (1385 ms)
[ RUN      ] SpoaTest.LocalAffine
[       OK ] SpoaTest.LocalAffine (1765 ms)
[ RUN      ] SpoaTest.LocalConvex
[       OK ] SpoaTest.LocalConvex (2975 ms)
[ RUN      ] SpoaTest.LocalWithQualities
[       OK ] SpoaTest.LocalWithQualities (1388 ms)
[ RUN      ] SpoaTest.LocalAffineWithQualities
[       OK ] SpoaTest.LocalAffineWithQualities (1768 ms)
[ RUN      ] SpoaTest.LocalConvexWithQualities
[       OK ] SpoaTest.LocalConvexWithQualities (2972 ms)
[ RUN      ] SpoaTest.Global
[       OK ] SpoaTest.Global (1263 ms)
[ RUN      ] SpoaTest.GlobalAffine
[       OK ] SpoaTest.GlobalAffine (1646 ms)
[ RUN      ] SpoaTest.GlobalConvex
[       OK ] SpoaTest.GlobalConvex (2844 ms)
[ RUN      ] SpoaTest.GlobalWithQualities
[       OK ] SpoaTest.GlobalWithQualities (1264 ms)
[ RUN      ] SpoaTest.GlobalAffineWithQualities
[       OK ] SpoaTest.GlobalAffineWithQualities (1649 ms)
[ RUN      ] SpoaTest.GlobalConvexWithQualities
[       OK ] SpoaTest.GlobalConvexWithQualities (2843 ms)
[ RUN      ] SpoaTest.SemiGlobal
[       OK ] SpoaTest.SemiGlobal (1253 ms)
[ RUN      ] SpoaTest.SemiGlobalAffine
[       OK ] SpoaTest.SemiGlobalAffine (1639 ms)
[ RUN      ] SpoaTest.SemiGlobalConvex
[       OK ] SpoaTest.SemiGlobalConvex (2849 ms)
[ RUN      ] SpoaTest.SemiGlobalWithQualities
[       OK ] SpoaTest.SemiGlobalWithQualities (1251 ms)
[ RUN      ] SpoaTest.SemiGlobalAffineWithQualities
[       OK ] SpoaTest.SemiGlobalAffineWithQualities (1634 ms)
[ RUN      ] SpoaTest.SemiGlobalConvexWithQualities
[       OK ] SpoaTest.SemiGlobalConvexWithQualities (2839 ms)
[----------] 19 tests from SpoaTest (37995 ms total)

[----------] Global test environment tear-down
[==========] 22 tests from 2 test suites ran. (37995 ms total)
[  PASSED  ] 22 tests.
`find . -name spoa | grep bin` test/data/sample.fastq.gz
>Consensus LN:i:495
AATGATGCGCTTTGTTGGCGCGGTGGCTTGATGCAGGGGCTAATCGACCTCTGGCAACCACTTTTCCATGACAGGAGTTGAATATGGCATTCAGTAATCCCTTCGATGATCCGCAGGGAGCGTTTTACATATTGCGCAATGCGCAGGGCAATTCAGTCTGTGGCCGCAACAATGCGTCTTACCGGCAGGCTGGGACATTGTGTGTCAGCCGCAGTCACAGGCGTCCTGCCAGCAGTGGCTGGAAGCCCACTGGCGTACTCTGACACCGACGAATTTTACCCAGTTGCAGGAGGCACAATGAGCCAGCATTTACCTTTGGTCGCCGCACAGCCCGGCATCTGGATGGCAGAAAAACTGTCAGAATTACCCTCCGCCTGGAGCGTGGCGCATTACGTTGAGTTAACCGGAGAGGTTGATTCGCCATTACTGGCCCGCGCGGTGGTTGCCGGACTAGCGCAAGCAGATACGCTTTACACGCGCAACCAAGGATTTCGG
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--no-parallel
   dh_prep -a -O--no-parallel
   dh_auto_install -a -O--no-parallel
	cd obj-arm-linux-gnueabihf && make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so.7.0.0
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa_static.a
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/alignment_engine.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/graph.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/spoa.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/version.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaTargets.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaTargets-release.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaConfig.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaConfigVersion.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/bin/spoa
-- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/bin/spoa" to ""
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
d-shlibmove --commit \
	    --multiarch \
	    --devunversioned \
	    --exclude-la \
	    --exclude-a \
	    --movedev debian/tmp/usr/include/spoa usr/include \
	    --movedev debian/tmp/usr/lib/arm-linux-gnueabihf/cmake /usr/lib/arm-linux-gnueabihf \
	    debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libspoa-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libspoa7.0.0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so debian/libspoa-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so.7.0.0 debian/libspoa7.0.0/usr/lib/arm-linux-gnueabihf
PKGDEV=libspoa-dev
PKGSHL=libspoa7.0.0
install -d -m 755 debian/libspoa-dev/usr/include
mv debian/tmp/usr/include/spoa debian/libspoa-dev/usr/include
install -d -m 755 debian/libspoa-dev//usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libspoa-dev//usr/lib/arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a -O--no-parallel
   dh_installchangelogs -a -O--no-parallel
   dh_installexamples -a -O--no-parallel
   dh_installman -a -O--no-parallel
   dh_installsystemduser -a -O--no-parallel
   dh_perl -a -O--no-parallel
   dh_link -a -O--no-parallel
   dh_strip_nondeterminism -a -O--no-parallel
   dh_compress -a -O--no-parallel
   dh_fixperms -a -O--no-parallel
   dh_missing -a -O--no-parallel
   dh_dwz -a -O--no-parallel
   dh_strip -a -O--no-parallel
   dh_makeshlibs -a -O--no-parallel
   dh_shlibdeps -a -O--no-parallel
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/spoa/usr/bin/spoa was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
   dh_installdeb -a -O--no-parallel
   dh_gencontrol -a -O--no-parallel
dpkg-gencontrol: warning: Depends field of package libspoa-dev: substitution variable ${shlibs:Depends} used, but is not defined
   dh_md5sums -a -O--no-parallel
   dh_builddeb -a -O--no-parallel
dpkg-deb: building package 'libspoa7.0.0' in '../libspoa7.0.0_4.1.4-1_armhf.deb'.
dpkg-deb: building package 'spoa' in '../spoa_4.1.4-1_armhf.deb'.
dpkg-deb: building package 'libspoa-dev' in '../libspoa-dev_4.1.4-1_armhf.deb'.
dpkg-deb: building package 'spoa-dbgsym' in '../spoa-dbgsym_4.1.4-1_armhf.deb'.
dpkg-deb: building package 'libspoa7.0.0-dbgsym' in '../libspoa7.0.0-dbgsym_4.1.4-1_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../spoa_4.1.4-1_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../spoa_4.1.4-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-05-19T22:04:14Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


spoa_4.1.4-1_armhf.changes:
---------------------------

Format: 1.8
Date: Thu, 21 Mar 2024 12:34:13 +0100
Source: spoa
Binary: libspoa-dev libspoa7.0.0 libspoa7.0.0-dbgsym spoa spoa-dbgsym
Architecture: armhf
Version: 4.1.4-1
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Michael R. Crusoe <crusoe@debian.org>
Description:
 libspoa-dev - SIMD partial order alignment library (development files)
 libspoa7.0.0 - SIMD partial order alignment library
 spoa       - SIMD partial order alignment tool
Closes: 1015667
Changes:
 spoa (4.1.4-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.6.2 (routine-update)
   * Refresh patches.
   * d/rules: set optimize=-lto. Closes: #1015667
   * d/libspoa7.0.0.symbols.amd64: add new symbols.
   * d/source/lintian-overrides: removed, no longer needed.
Checksums-Sha1:
 eae5ea79acdceee1445c77b03aa309ebfcd05fe2 9400 libspoa-dev_4.1.4-1_armhf.deb
 3e66b936c8d12b79ba58427b2ae2856531a20a0a 657240 libspoa7.0.0-dbgsym_4.1.4-1_armhf.deb
 a85aaa7aa79580cb1c3ff39ffdd08bf12f49ffa1 55260 libspoa7.0.0_4.1.4-1_armhf.deb
 b0d65587b681aff4dcd01db392bc6b18d31445d7 237300 spoa-dbgsym_4.1.4-1_armhf.deb
 5fc56da8473d1f1c291fa195d1052e464b8dc1a3 7749 spoa_4.1.4-1_armhf.buildinfo
 043dae5f7b9b749bcc1f4218122b829c017cd1cb 34628 spoa_4.1.4-1_armhf.deb
Checksums-Sha256:
 95e1d3305af68d143ca6406d943690e63d90c16a9825ac5fd627c101c4d1eec8 9400 libspoa-dev_4.1.4-1_armhf.deb
 a368b0555975481544ed6489c0b86132f7fa9bd64c910e1b5f48b42b5c04e1dd 657240 libspoa7.0.0-dbgsym_4.1.4-1_armhf.deb
 87b6590e743e9d2370e5ac73f60a85309221631760bbd1b5286da349ca2e2152 55260 libspoa7.0.0_4.1.4-1_armhf.deb
 c9cd608c4da903bbc8718b5660b1ccc3003338c2a2b04214865a4591ade58ce7 237300 spoa-dbgsym_4.1.4-1_armhf.deb
 05f82e59981fa8178475fbf80d683a8d05dfa64231eefb0137614ca1b46226e3 7749 spoa_4.1.4-1_armhf.buildinfo
 da4666bcc3ef78c6a36c4070fe8389a7cdec69060a2c37697f16bfcccf1ef459 34628 spoa_4.1.4-1_armhf.deb
Files:
 64960b48f0e60eccd8524ebc0496c086 9400 libdevel optional libspoa-dev_4.1.4-1_armhf.deb
 7fae88dc61656684be6dc301ca8a1d36 657240 debug optional libspoa7.0.0-dbgsym_4.1.4-1_armhf.deb
 ad101d364d5333c5c5d28aebaabd74d5 55260 libs optional libspoa7.0.0_4.1.4-1_armhf.deb
 10d0e4fde73f69086826659cde031d11 237300 debug optional spoa-dbgsym_4.1.4-1_armhf.deb
 5a9de31e8521ad1c8da1f71db9820238 7749 science optional spoa_4.1.4-1_armhf.buildinfo
 f445732506a6677546d3102b830e6963 34628 science optional spoa_4.1.4-1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


libspoa-dev_4.1.4-1_armhf.deb
-----------------------------

 new Debian package, version 2.0.
 size 9400 bytes: control archive=1096 bytes.
     816 bytes,    20 lines      control
     783 bytes,    10 lines      md5sums
 Package: libspoa-dev
 Source: spoa
 Version: 4.1.4-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 42
 Depends: libspoa7.0.0 (= 4.1.4-1), libcereal-dev
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/rvaser/spoa
 Description: SIMD partial order alignment library (development files)
  Spoa (SIMD POA) is a c++ implementation of the partial order alignment
  (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which
  is used to generate consensus sequences (as described in
  10.1093/bioinformatics/btg109). It supports three alignment modes: local
  (Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment
  (overlap).
  .
  This package contains the static library and the header files.

drwxr-xr-x root/root         0 2024-03-21 11:34 ./
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/include/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/include/spoa/
-rw-r--r-- root/root      2195 2023-11-30 09:33 ./usr/include/spoa/alignment_engine.hpp
-rw-r--r-- root/root      7825 2023-11-30 09:33 ./usr/include/spoa/graph.hpp
-rw-r--r-- root/root       186 2023-11-30 09:33 ./usr/include/spoa/spoa.hpp
-rw-r--r-- root/root       201 2023-11-30 09:33 ./usr/include/spoa/version.hpp
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/lib/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/lib/arm-linux-gnueabihf/cmake/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/lib/arm-linux-gnueabihf/cmake/spoa/
-rw-r--r-- root/root      1478 2024-03-21 11:34 ./usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaConfig.cmake
-rw-r--r-- root/root      2762 2024-03-21 11:34 ./usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaConfigVersion.cmake
-rw-r--r-- root/root      1398 2024-03-21 11:34 ./usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaTargets-release.cmake
-rw-r--r-- root/root      4844 2024-03-21 11:34 ./usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaTargets.cmake
lrwxrwxrwx root/root         0 2024-03-21 11:34 ./usr/lib/arm-linux-gnueabihf/libspoa.so -> libspoa.so.7.0.0
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/share/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/share/doc/libspoa-dev/
-rw-r--r-- root/root      1892 2024-03-21 11:34 ./usr/share/doc/libspoa-dev/changelog.Debian.gz
-rw-r--r-- root/root      1353 2024-03-21 11:34 ./usr/share/doc/libspoa-dev/copyright


libspoa7.0.0-dbgsym_4.1.4-1_armhf.deb
-------------------------------------

 new Debian package, version 2.0.
 size 657240 bytes: control archive=556 bytes.
     399 bytes,    13 lines      control
     106 bytes,     1 lines      md5sums
 Package: libspoa7.0.0-dbgsym
 Source: spoa
 Version: 4.1.4-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 666
 Depends: libspoa7.0.0 (= 4.1.4-1)
 Section: debug
 Priority: optional
 Multi-Arch: same
 Description: debug symbols for libspoa7.0.0
 Build-Ids: 98f3d70cc364835b92cd8173e44a7e839936eb20

drwxr-xr-x root/root         0 2024-03-21 11:34 ./
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/lib/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/lib/debug/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/lib/debug/.build-id/98/
-rw-r--r-- root/root    671684 2024-03-21 11:34 ./usr/lib/debug/.build-id/98/f3d70cc364835b92cd8173e44a7e839936eb20.debug
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/share/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/share/doc/
lrwxrwxrwx root/root         0 2024-03-21 11:34 ./usr/share/doc/libspoa7.0.0-dbgsym -> libspoa7.0.0


libspoa7.0.0_4.1.4-1_armhf.deb
------------------------------

 new Debian package, version 2.0.
 size 55260 bytes: control archive=984 bytes.
     790 bytes,    20 lines      control
     231 bytes,     3 lines      md5sums
      38 bytes,     1 lines      shlibs
      68 bytes,     2 lines      triggers
 Package: libspoa7.0.0
 Source: spoa
 Version: 4.1.4-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 152
 Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1)
 Section: libs
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/rvaser/spoa
 Description: SIMD partial order alignment library
  Spoa (SIMD POA) is a c++ implementation of the partial order alignment
  (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which
  is used to generate consensus sequences (as described in
  10.1093/bioinformatics/btg109). It supports three alignment modes: local
  (Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment
  (overlap).
  .
  This package contains the shared library.

drwxr-xr-x root/root         0 2024-03-21 11:34 ./
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/lib/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root    140704 2024-03-21 11:34 ./usr/lib/arm-linux-gnueabihf/libspoa.so.7.0.0
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/share/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/share/doc/libspoa7.0.0/
-rw-r--r-- root/root      1893 2024-03-21 11:34 ./usr/share/doc/libspoa7.0.0/changelog.Debian.gz
-rw-r--r-- root/root      1353 2024-03-21 11:34 ./usr/share/doc/libspoa7.0.0/copyright


spoa-dbgsym_4.1.4-1_armhf.deb
-----------------------------

 new Debian package, version 2.0.
 size 237300 bytes: control archive=532 bytes.
     358 bytes,    12 lines      control
     106 bytes,     1 lines      md5sums
 Package: spoa-dbgsym
 Source: spoa
 Version: 4.1.4-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 251
 Depends: spoa (= 4.1.4-1)
 Section: debug
 Priority: optional
 Description: debug symbols for spoa
 Build-Ids: fb9d6d58575242d7f494378c7c56113d9ecfe4fa

drwxr-xr-x root/root         0 2024-03-21 11:34 ./
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/lib/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/lib/debug/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/lib/debug/.build-id/fb/
-rw-r--r-- root/root    246248 2024-03-21 11:34 ./usr/lib/debug/.build-id/fb/9d6d58575242d7f494378c7c56113d9ecfe4fa.debug
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/share/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/share/doc/
lrwxrwxrwx root/root         0 2024-03-21 11:34 ./usr/share/doc/spoa-dbgsym -> spoa


spoa_4.1.4-1_armhf.deb
----------------------

 new Debian package, version 2.0.
 size 34628 bytes: control archive=932 bytes.
     754 bytes,    16 lines      control
     391 bytes,     6 lines      md5sums
 Package: spoa
 Version: 4.1.4-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 69
 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.5), libspoa7.0.0 (>= 4.1.4), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.3.3)
 Section: science
 Priority: optional
 Homepage: https://github.com/rvaser/spoa
 Description: SIMD partial order alignment tool
  Spoa (SIMD POA) is a c++ implementation of the partial order alignment
  (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which
  is used to generate consensus sequences (as described in
  10.1093/bioinformatics/btg109). It supports three alignment modes: local
  (Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment
  (overlap).

drwxr-xr-x root/root         0 2024-03-21 11:34 ./
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/bin/
-rwxr-xr-x root/root     38536 2024-03-21 11:34 ./usr/bin/spoa
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/share/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/share/doc/spoa/
-rw-r--r-- root/root      1889 2024-03-21 11:34 ./usr/share/doc/spoa/changelog.Debian.gz
-rw-r--r-- root/root      1353 2024-03-21 11:34 ./usr/share/doc/spoa/copyright
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/share/doc/spoa/examples/
-rw-r--r-- root/root     15064 2024-03-21 11:34 ./usr/share/doc/spoa/examples/sample.fastq.gz
-rw-r--r-- root/root       294 2020-12-23 09:24 ./usr/share/doc/spoa/run-unit-test
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/share/man/
drwxr-xr-x root/root         0 2024-03-21 11:34 ./usr/share/man/man1/
-rw-r--r-- root/root       700 2024-03-21 11:34 ./usr/share/man/man1/spoa.1.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 21116
Build-Time: 158
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 188
Job: spoa_4.1.4-1
Machine Architecture: armhf
Package: spoa
Package-Time: 370
Source-Version: 4.1.4-1
Space: 21116
Status: successful
Version: 4.1.4-1
--------------------------------------------------------------------------------
Finished at 2024-05-19T22:04:14Z
Build needed 00:06:10, 21116k disk space