spades →
3.15.5+dfsg-2 →
armhf → 2023-05-20 03:06:43
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| spades 3.15.5+dfsg-2 (armhf) Sat, 20 May 2023 02:41:34 +0000 |
+==============================================================================+
Package: spades
Version: 3.15.5+dfsg-2
Source Version: 3.15.5+dfsg-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-1262040f-7ff5-4e07-8c32-fe179e9b1e69' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/spades-Qcd6ZG/resolver-ORM2wB' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.7 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.5 MB]
Fetched 28.3 MB in 16s (1718 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'spades' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/spades.git
Please use:
git clone https://salsa.debian.org/med-team/spades.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 9936 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main spades 3.15.5+dfsg-2 (dsc) [2559 B]
Get:2 http://172.17.4.1/private bookworm-staging/main spades 3.15.5+dfsg-2 (tar) [9903 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main spades 3.15.5+dfsg-2 (diff) [30.4 kB]
Fetched 9936 kB in 2s (6376 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/spades-Qcd6ZG/spades-3.15.5+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/spades-Qcd6ZG' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, clang-format, clang-tidy, clang-tools, cmake, python3-all, zlib1g-dev, libbz2-dev, libbam-dev, libbamtools-dev, libc++-dev, libhts-dev, libnlopt-dev, libnlopt-cxx-dev, libssw-dev, llvm-dev, python3-yaml, python3-joblib, asciidoctor, bwa, libbwa-dev, lynx, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-python, clang-format, clang-tidy, clang-tools, cmake, python3-all, zlib1g-dev, libbz2-dev, libbam-dev, libbamtools-dev, libc++-dev, libhts-dev, libnlopt-dev, libnlopt-cxx-dev, libssw-dev, llvm-dev, python3-yaml, python3-joblib, asciidoctor, bwa, libbwa-dev, lynx, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [485 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [567 B]
Fetched 2009 B in 0s (39.3 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bsdextrautils bwa
ca-certificates clang-14 clang-format clang-format-14 clang-tidy
clang-tidy-14 clang-tools clang-tools-14 cmake cmake-data debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl
libarchive13 libbam-dev libbamtools-dev libbamtools2.5.2 libbrotli1 libbsd0
libbwa-dev libbz2-dev libc++-14-dev libc++-dev libc++1-14 libc++abi1-14
libclang-common-14-dev libclang-cpp14 libclang1-14 libcurl3-gnutls
libcurl3-nss libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev
libdeflate0 libedit2 libelf1 libexpat1 libffi-dev
libfile-stripnondeterminism-perl libgc1 libhts-dev libhts3 libhtscodecs2
libicu-dev libicu72 libjsoncpp25 libllvm14 liblzma-dev libmagic-mgc
libmagic1 libncurses-dev libncurses6 libncursesw6 libnghttp2-14
libnlopt-cxx-dev libnlopt-cxx0 libnlopt-dev libnlopt0 libnspr4 libnss3
libobjc-12-dev libobjc4 libpfm4 libpipeline1 libproc2-0 libpsl5
libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librhash0
librtmp1 libruby libruby3.1 libssh2-1 libssw-dev libssw0
libsub-override-perl libtinfo-dev libtinfo6 libtool libuchardet0 libuv1
libxml2 libxml2-dev libyaml-0-2 libz3-4 libz3-dev llvm llvm-14 llvm-14-dev
llvm-14-linker-tools llvm-14-runtime llvm-14-tools llvm-dev llvm-runtime
lynx lynx-common m4 man-db media-types ncurses-base ncurses-bin
nss-plugin-pem openssl po-debconf procps python3 python3-all
python3-distutils python3-joblib python3-lib2to3 python3-minimal
python3-pkg-resources python3-pygments python3-yaml python3.11
python3.11-minimal rake ruby ruby-asciidoctor ruby-net-telnet ruby-rubygems
ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc samtools clang-14-doc wasi-libc
cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make flit
python3-build python3-tomli python3-installer gettext-doc libasprintf-dev
libgettextpo-dev groff lrzip libbamtools-doc clang libcurl4-doc
libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev
libssh2-1-dev pkg-config icu-doc liblzma-doc ncurses-doc libtool-doc
gfortran | fortran95-compiler gcj-jdk llvm-14-doc m4-doc apparmor less
libmail-box-perl python3-doc python3-tk python3-venv python3-setuptools
python-pygments-doc ttf-bitstream-vera python3.11-venv python3.11-doc
binfmt-support ri ruby-dev bundler
Recommended packages:
bzip2-doc libclang-rt-14-dev libarchive-cpio-perl libgpm2 publicsuffix
libltdl-dev binfmt-support | systemd mailcap libmail-sendmail-perl psmisc
python3-numpy python3-pytest python3-simplejson python3-psutil zip
fonts-lato libjs-jquery
The following NEW packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bsdextrautils bwa
ca-certificates clang-14 clang-format clang-format-14 clang-tidy
clang-tidy-14 clang-tools clang-tools-14 cmake cmake-data debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl
libarchive13 libbam-dev libbamtools-dev libbamtools2.5.2 libbrotli1 libbsd0
libbwa-dev libbz2-dev libc++-14-dev libc++-dev libc++1-14 libc++abi1-14
libclang-common-14-dev libclang-cpp14 libclang1-14 libcurl3-gnutls
libcurl3-nss libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev
libdeflate0 libedit2 libelf1 libexpat1 libffi-dev
libfile-stripnondeterminism-perl libgc1 libhts-dev libhts3 libhtscodecs2
libicu-dev libicu72 libjsoncpp25 libllvm14 liblzma-dev libmagic-mgc
libmagic1 libncurses-dev libncurses6 libnghttp2-14 libnlopt-cxx-dev
libnlopt-cxx0 libnlopt-dev libnlopt0 libnspr4 libnss3 libobjc-12-dev
libobjc4 libpfm4 libpipeline1 libproc2-0 libpsl5 libpython3-stdlib
libpython3.11-minimal libpython3.11-stdlib librhash0 librtmp1 libruby
libruby3.1 libssh2-1 libssw-dev libssw0 libsub-override-perl libtinfo-dev
libtool libuchardet0 libuv1 libxml2 libxml2-dev libyaml-0-2 libz3-4
libz3-dev llvm llvm-14 llvm-14-dev llvm-14-linker-tools llvm-14-runtime
llvm-14-tools llvm-dev llvm-runtime lynx lynx-common m4 man-db media-types
nss-plugin-pem openssl po-debconf procps python3 python3-all
python3-distutils python3-joblib python3-lib2to3 python3-minimal
python3-pkg-resources python3-pygments python3-yaml python3.11
python3.11-minimal rake ruby ruby-asciidoctor ruby-net-telnet ruby-rubygems
ruby-sdbm ruby-webrick ruby-xmlrpc ruby3.1 rubygems-integration
sbuild-build-depends-main-dummy zlib1g-dev
The following packages will be upgraded:
libncursesw6 libtinfo6 ncurses-base ncurses-bin
4 upgraded, 142 newly installed, 0 to remove and 15 not upgraded.
Need to get 157 MB of archives.
After this operation, 796 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [992 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf ncurses-bin armhf 6.4-4 [414 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf ncurses-base all 6.4-4 [261 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-minimal armhf 3.11.2-6 [797 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf python3.11-minimal armhf 3.11.2-6 [1679 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.11.2-1 [26.0 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf media-types all 10.0.0 [26.1 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libtinfo6 armhf 6.4-4 [317 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libncursesw6 armhf 6.4-4 [106 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1668 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf python3.11 armhf 3.11.2-6 [572 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.11.2-1 [9012 B]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.11.2-1 [26.0 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-10 [774 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-5 [78.5 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.2-2 [1342 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libproc2-0 armhf 2:4.0.2-3 [53.6 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf procps armhf 2:4.0.2-3 [679 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.8-1 [1357 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.44-3 [95.3 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.44-3 [41.5 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-12 [156 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf rubygems-integration all 1.18 [6704 B]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf rake all 13.0.6-3 [83.9 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf ruby-net-telnet all 0.2.0-1 [13.1 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf ruby-webrick all 1.8.1-1 [51.4 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf ruby-xmlrpc all 0.3.2-2 [24.4 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libruby armhf 1:3.1 [4968 B]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf ruby-sdbm armhf 1.0.0-5+rpi1 [15.9 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-2 [112 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20221030-2 [76.2 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.4-4 [80.0 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libyaml-0-2 armhf 0.2.5-1 [44.6 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libruby3.1 armhf 3.1.2-7 [5011 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf ruby3.1 armhf 3.1.2-7 [663 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf ruby-rubygems all 3.3.15-2 [293 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf ruby armhf 1:3.1 [5868 B]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf ruby-asciidoctor all 2.0.18-2 [211 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf asciidoctor all 2.0.18-2 [86.6 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-3 [256 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-12 [495 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf bwa armhf 0.7.17-7 [196 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [571 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libz3-4 armhf 4.8.12-3.1 [5797 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libllvm14 armhf 1:14.0.6-12+rpi1 [19.5 MB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libclang-cpp14 armhf 1:14.0.6-12+rpi1 [9464 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libgc1 armhf 1:8.2.2-3 [235 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libobjc4 armhf 12.2.0-14+rpi1 [33.6 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libobjc-12-dev armhf 12.2.0-14+rpi1 [159 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libclang-common-14-dev all 1:14.0.6-12+rpi1 [891 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf llvm-14-linker-tools armhf 1:14.0.6-12+rpi1 [1044 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libclang1-14 armhf 1:14.0.6-12+rpi1 [5208 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf clang-14 armhf 1:14.0.6-12+rpi1 [95.7 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf clang-format-14 armhf 1:14.0.6-12+rpi1 [71.9 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf clang-format armhf 1:14.0-55.6 [5096 B]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf clang-tools-14 armhf 1:14.0.6-12+rpi1 [5616 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf python3-yaml armhf 6.0-3+b1 [141 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf clang-tidy-14 armhf 1:14.0.6-12+rpi1 [1349 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf clang-tidy armhf 1:14.0-55.6 [4872 B]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf clang-tools armhf 1:14.0-55.6 [4876 B]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libarchive13 armhf 3.6.2-1 [293 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.52.0-1 [60.6 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.88.1-7 [343 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libjsoncpp25 armhf 1.9.5-4 [66.7 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf librhash0 armhf 1.4.3-3 [142 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libuv1 armhf 1.44.2-1+rpi1 [125 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf cmake-data all 3.25.1-1 [2026 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf cmake armhf 3.25.1-1 [3859 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.4 [81.2 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-12 [1201 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.4 [942 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.11.2-3 [76.3 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.11.2-3 [131 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20230130 [104 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 72.1-3 [175 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [901 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libbam-dev armhf 0.1.19+dfsg-6 [105 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libbamtools2.5.2 armhf 2.5.2+dfsg-4 [126 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libbamtools-dev armhf 2.5.2+dfsg-4 [182 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libbwa-dev armhf 0.7.17-7 [150 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libc++abi1-14 armhf 1:14.0.6-12+rpi1 [79.7 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libc++1-14 armhf 1:14.0.6-12+rpi1 [251 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libc++-14-dev armhf 1:14.0.6-12+rpi1 [942 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libc++-dev armhf 1:14.0-55.6 [4604 B]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.88.1-7 [338 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libnspr4 armhf 2:4.35-1 [90.9 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libnss3 armhf 2:3.87.1-1 [1090 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf nss-plugin-pem armhf 1.0.8+1-1 [39.5 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-nss armhf 7.88.1-7 [345 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libcurl4-gnutls-dev armhf 7.88.1-7 [418 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libdeflate-dev armhf 1.14-1 [48.1 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libffi-dev armhf 3.4.4-1 [60.4 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.3.0-4 [59.5 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libhts3 armhf 1.16+ds-3 [367 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.4.1-0.2 [246 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libhts-dev armhf 1.16+ds-3 [1479 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 72.1-3 [9959 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.4-4 [292 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libnlopt0 armhf 2.7.1-4+b2 [139 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libnlopt-dev armhf 2.7.1-4+b2 [46.4 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libnlopt-cxx0 armhf 2.7.1-4+b2 [158 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libnlopt-cxx-dev armhf 2.7.1-4+b2 [13.2 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libpfm4 armhf 4.13.0-1 [45.3 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libssw0 armhf 1.1-13 [21.0 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libssw-dev armhf 1.1-13 [24.0 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libtinfo-dev armhf 6.4-4 [924 B]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libxml2-dev armhf 2.9.14+dfsg-1.2 [636 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libz3-dev armhf 4.8.12-3.1 [90.6 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf llvm-14-runtime armhf 1:14.0.6-12+rpi1 [430 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf llvm-runtime armhf 1:14.0-55.6 [4640 B]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf llvm-14 armhf 1:14.0.6-12+rpi1 [10.0 MB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf llvm armhf 1:14.0-55.6 [7020 B]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 66.1.1-1 [296 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf python3-pygments all 2.14.0+dfsg-1 [783 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf llvm-14-tools armhf 1:14.0.6-12+rpi1 [361 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf llvm-14-dev armhf 1:14.0.6-12+rpi1 [33.9 MB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf llvm-dev armhf 1:14.0-55.6 [4896 B]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf lynx-common all 2.9.0dev.12-1 [1166 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf lynx armhf 2.9.0dev.12-1 [488 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.11.2-1 [1060 B]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf python3-joblib all 1.2.0-4 [211 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 157 MB in 21s (7435 kB/s)
(Reading database ... 14407 files and directories currently installed.)
Preparing to unpack .../ncurses-bin_6.4-4_armhf.deb ...
Unpacking ncurses-bin (6.4-4) over (6.4-2) ...
Setting up ncurses-bin (6.4-4) ...
(Reading database ... 14407 files and directories currently installed.)
Preparing to unpack .../ncurses-base_6.4-4_all.deb ...
Unpacking ncurses-base (6.4-4) over (6.4-2) ...
Setting up ncurses-base (6.4-4) ...
Selecting previously unselected package libpython3.11-minimal:armhf.
(Reading database ... 14407 files and directories currently installed.)
Preparing to unpack .../libpython3.11-minimal_3.11.2-6_armhf.deb ...
Unpacking libpython3.11-minimal:armhf (3.11.2-6) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.5.0-1_armhf.deb ...
Unpacking libexpat1:armhf (2.5.0-1) ...
Selecting previously unselected package python3.11-minimal.
Preparing to unpack .../python3.11-minimal_3.11.2-6_armhf.deb ...
Unpacking python3.11-minimal (3.11.2-6) ...
Setting up libpython3.11-minimal:armhf (3.11.2-6) ...
Setting up libexpat1:armhf (2.5.0-1) ...
Setting up python3.11-minimal (3.11.2-6) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 14723 files and directories currently installed.)
Preparing to unpack .../python3-minimal_3.11.2-1_armhf.deb ...
Unpacking python3-minimal (3.11.2-1) ...
Selecting previously unselected package media-types.
Preparing to unpack .../media-types_10.0.0_all.deb ...
Unpacking media-types (10.0.0) ...
Preparing to unpack .../libtinfo6_6.4-4_armhf.deb ...
Unpacking libtinfo6:armhf (6.4-4) over (6.4-2) ...
Setting up libtinfo6:armhf (6.4-4) ...
(Reading database ... 14750 files and directories currently installed.)
Preparing to unpack .../libncursesw6_6.4-4_armhf.deb ...
Unpacking libncursesw6:armhf (6.4-4) over (6.4-2) ...
Setting up libncursesw6:armhf (6.4-4) ...
Selecting previously unselected package libpython3.11-stdlib:armhf.
(Reading database ... 14750 files and directories currently installed.)
Preparing to unpack .../libpython3.11-stdlib_3.11.2-6_armhf.deb ...
Unpacking libpython3.11-stdlib:armhf (3.11.2-6) ...
Selecting previously unselected package python3.11.
Preparing to unpack .../python3.11_3.11.2-6_armhf.deb ...
Unpacking python3.11 (3.11.2-6) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../libpython3-stdlib_3.11.2-1_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.11.2-1) ...
Setting up python3-minimal (3.11.2-1) ...
Selecting previously unselected package python3.
(Reading database ... 15131 files and directories currently installed.)
Preparing to unpack .../000-python3_3.11.2-1_armhf.deb ...
Unpacking python3 (3.11.2-1) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../001-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../002-groff-base_1.22.4-10_armhf.deb ...
Unpacking groff-base (1.22.4-10) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../003-bsdextrautils_2.38.1-5_armhf.deb ...
Unpacking bsdextrautils (2.38.1-5) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../004-libpipeline1_1.5.7-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.7-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../005-man-db_2.11.2-2_armhf.deb ...
Unpacking man-db (2.11.2-2) ...
Selecting previously unselected package libproc2-0:armhf.
Preparing to unpack .../006-libproc2-0_2%3a4.0.2-3_armhf.deb ...
Unpacking libproc2-0:armhf (2:4.0.2-3) ...
Selecting previously unselected package procps.
Preparing to unpack .../007-procps_2%3a4.0.2-3_armhf.deb ...
Unpacking procps (2:4.0.2-3) ...
Selecting previously unselected package openssl.
Preparing to unpack .../008-openssl_3.0.8-1_armhf.deb ...
Unpacking openssl (3.0.8-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../009-ca-certificates_20230311_all.deb ...
Unpacking ca-certificates (20230311) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../010-libmagic-mgc_1%3a5.44-3_armhf.deb ...
Unpacking libmagic-mgc (1:5.44-3) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../011-libmagic1_1%3a5.44-3_armhf.deb ...
Unpacking libmagic1:armhf (1:5.44-3) ...
Selecting previously unselected package file.
Preparing to unpack .../012-file_1%3a5.44-3_armhf.deb ...
Unpacking file (1:5.44-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../013-gettext-base_0.21-12_armhf.deb ...
Unpacking gettext-base (0.21-12) ...
Selecting previously unselected package rubygems-integration.
Preparing to unpack .../014-rubygems-integration_1.18_all.deb ...
Unpacking rubygems-integration (1.18) ...
Selecting previously unselected package rake.
Preparing to unpack .../015-rake_13.0.6-3_all.deb ...
Unpacking rake (13.0.6-3) ...
Selecting previously unselected package ruby-net-telnet.
Preparing to unpack .../016-ruby-net-telnet_0.2.0-1_all.deb ...
Unpacking ruby-net-telnet (0.2.0-1) ...
Selecting previously unselected package ruby-webrick.
Preparing to unpack .../017-ruby-webrick_1.8.1-1_all.deb ...
Unpacking ruby-webrick (1.8.1-1) ...
Selecting previously unselected package ruby-xmlrpc.
Preparing to unpack .../018-ruby-xmlrpc_0.3.2-2_all.deb ...
Unpacking ruby-xmlrpc (0.3.2-2) ...
Selecting previously unselected package libruby:armhf.
Preparing to unpack .../019-libruby_1%3a3.1_armhf.deb ...
Unpacking libruby:armhf (1:3.1) ...
Selecting previously unselected package ruby-sdbm:armhf.
Preparing to unpack .../020-ruby-sdbm_1.0.0-5+rpi1_armhf.deb ...
Unpacking ruby-sdbm:armhf (1.0.0-5+rpi1) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../021-libbsd0_0.11.7-2_armhf.deb ...
Unpacking libbsd0:armhf (0.11.7-2) ...
Selecting previously unselected package libedit2:armhf.
Preparing to unpack .../022-libedit2_3.1-20221030-2_armhf.deb ...
Unpacking libedit2:armhf (3.1-20221030-2) ...
Selecting previously unselected package libncurses6:armhf.
Preparing to unpack .../023-libncurses6_6.4-4_armhf.deb ...
Unpacking libncurses6:armhf (6.4-4) ...
Selecting previously unselected package libyaml-0-2:armhf.
Preparing to unpack .../024-libyaml-0-2_0.2.5-1_armhf.deb ...
Unpacking libyaml-0-2:armhf (0.2.5-1) ...
Selecting previously unselected package libruby3.1:armhf.
Preparing to unpack .../025-libruby3.1_3.1.2-7_armhf.deb ...
Unpacking libruby3.1:armhf (3.1.2-7) ...
Selecting previously unselected package ruby3.1.
Preparing to unpack .../026-ruby3.1_3.1.2-7_armhf.deb ...
Unpacking ruby3.1 (3.1.2-7) ...
Selecting previously unselected package ruby-rubygems.
Preparing to unpack .../027-ruby-rubygems_3.3.15-2_all.deb ...
Unpacking ruby-rubygems (3.3.15-2) ...
Selecting previously unselected package ruby.
Preparing to unpack .../028-ruby_1%3a3.1_armhf.deb ...
Unpacking ruby (1:3.1) ...
Selecting previously unselected package ruby-asciidoctor.
Preparing to unpack .../029-ruby-asciidoctor_2.0.18-2_all.deb ...
Unpacking ruby-asciidoctor (2.0.18-2) ...
Selecting previously unselected package asciidoctor.
Preparing to unpack .../030-asciidoctor_2.0.18-2_all.deb ...
Unpacking asciidoctor (2.0.18-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../031-m4_1.4.19-3_armhf.deb ...
Unpacking m4 (1.4.19-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../032-autoconf_2.71-3_all.deb ...
Unpacking autoconf (2.71-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../033-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../034-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../035-autopoint_0.21-12_all.deb ...
Unpacking autopoint (0.21-12) ...
Selecting previously unselected package bwa.
Preparing to unpack .../036-bwa_0.7.17-7_armhf.deb ...
Unpacking bwa (0.7.17-7) ...
Selecting previously unselected package libicu72:armhf.
Preparing to unpack .../037-libicu72_72.1-3_armhf.deb ...
Unpacking libicu72:armhf (72.1-3) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../038-libxml2_2.9.14+dfsg-1.2_armhf.deb ...
Unpacking libxml2:armhf (2.9.14+dfsg-1.2) ...
Selecting previously unselected package libz3-4:armhf.
Preparing to unpack .../039-libz3-4_4.8.12-3.1_armhf.deb ...
Unpacking libz3-4:armhf (4.8.12-3.1) ...
Selecting previously unselected package libllvm14:armhf.
Preparing to unpack .../040-libllvm14_1%3a14.0.6-12+rpi1_armhf.deb ...
Unpacking libllvm14:armhf (1:14.0.6-12+rpi1) ...
Selecting previously unselected package libclang-cpp14.
Preparing to unpack .../041-libclang-cpp14_1%3a14.0.6-12+rpi1_armhf.deb ...
Unpacking libclang-cpp14 (1:14.0.6-12+rpi1) ...
Selecting previously unselected package libgc1:armhf.
Preparing to unpack .../042-libgc1_1%3a8.2.2-3_armhf.deb ...
Unpacking libgc1:armhf (1:8.2.2-3) ...
Selecting previously unselected package libobjc4:armhf.
Preparing to unpack .../043-libobjc4_12.2.0-14+rpi1_armhf.deb ...
Unpacking libobjc4:armhf (12.2.0-14+rpi1) ...
Selecting previously unselected package libobjc-12-dev:armhf.
Preparing to unpack .../044-libobjc-12-dev_12.2.0-14+rpi1_armhf.deb ...
Unpacking libobjc-12-dev:armhf (12.2.0-14+rpi1) ...
Selecting previously unselected package libclang-common-14-dev.
Preparing to unpack .../045-libclang-common-14-dev_1%3a14.0.6-12+rpi1_all.deb ...
Unpacking libclang-common-14-dev (1:14.0.6-12+rpi1) ...
Selecting previously unselected package llvm-14-linker-tools.
Preparing to unpack .../046-llvm-14-linker-tools_1%3a14.0.6-12+rpi1_armhf.deb ...
Unpacking llvm-14-linker-tools (1:14.0.6-12+rpi1) ...
Selecting previously unselected package libclang1-14.
Preparing to unpack .../047-libclang1-14_1%3a14.0.6-12+rpi1_armhf.deb ...
Unpacking libclang1-14 (1:14.0.6-12+rpi1) ...
Selecting previously unselected package clang-14.
Preparing to unpack .../048-clang-14_1%3a14.0.6-12+rpi1_armhf.deb ...
Unpacking clang-14 (1:14.0.6-12+rpi1) ...
Selecting previously unselected package clang-format-14.
Preparing to unpack .../049-clang-format-14_1%3a14.0.6-12+rpi1_armhf.deb ...
Unpacking clang-format-14 (1:14.0.6-12+rpi1) ...
Selecting previously unselected package clang-format:armhf.
Preparing to unpack .../050-clang-format_1%3a14.0-55.6_armhf.deb ...
Unpacking clang-format:armhf (1:14.0-55.6) ...
Selecting previously unselected package clang-tools-14.
Preparing to unpack .../051-clang-tools-14_1%3a14.0.6-12+rpi1_armhf.deb ...
Unpacking clang-tools-14 (1:14.0.6-12+rpi1) ...
Selecting previously unselected package python3-yaml.
Preparing to unpack .../052-python3-yaml_6.0-3+b1_armhf.deb ...
Unpacking python3-yaml (6.0-3+b1) ...
Selecting previously unselected package clang-tidy-14.
Preparing to unpack .../053-clang-tidy-14_1%3a14.0.6-12+rpi1_armhf.deb ...
Unpacking clang-tidy-14 (1:14.0.6-12+rpi1) ...
Selecting previously unselected package clang-tidy.
Preparing to unpack .../054-clang-tidy_1%3a14.0-55.6_armhf.deb ...
Unpacking clang-tidy (1:14.0-55.6) ...
Selecting previously unselected package clang-tools:armhf.
Preparing to unpack .../055-clang-tools_1%3a14.0-55.6_armhf.deb ...
Unpacking clang-tools:armhf (1:14.0-55.6) ...
Selecting previously unselected package libarchive13:armhf.
Preparing to unpack .../056-libarchive13_3.6.2-1_armhf.deb ...
Unpacking libarchive13:armhf (3.6.2-1) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../057-libbrotli1_1.0.9-2+b3_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.9-2+b3) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../058-libnghttp2-14_1.52.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.52.0-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../059-libpsl5_0.21.2-1_armhf.deb ...
Unpacking libpsl5:armhf (0.21.2-1) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../060-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../061-libssh2-1_1.10.0-3+b1_armhf.deb ...
Unpacking libssh2-1:armhf (1.10.0-3+b1) ...
Selecting previously unselected package libcurl4:armhf.
Preparing to unpack .../062-libcurl4_7.88.1-7_armhf.deb ...
Unpacking libcurl4:armhf (7.88.1-7) ...
Selecting previously unselected package libjsoncpp25:armhf.
Preparing to unpack .../063-libjsoncpp25_1.9.5-4_armhf.deb ...
Unpacking libjsoncpp25:armhf (1.9.5-4) ...
Selecting previously unselected package librhash0:armhf.
Preparing to unpack .../064-librhash0_1.4.3-3_armhf.deb ...
Unpacking librhash0:armhf (1.4.3-3) ...
Selecting previously unselected package libuv1:armhf.
Preparing to unpack .../065-libuv1_1.44.2-1+rpi1_armhf.deb ...
Unpacking libuv1:armhf (1.44.2-1+rpi1) ...
Selecting previously unselected package cmake-data.
Preparing to unpack .../066-cmake-data_3.25.1-1_all.deb ...
Unpacking cmake-data (3.25.1-1) ...
Selecting previously unselected package cmake.
Preparing to unpack .../067-cmake_3.25.1-1_armhf.deb ...
Unpacking cmake (3.25.1-1) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../068-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
Selecting previously unselected package libtool.
Preparing to unpack .../069-libtool_2.4.7-5_all.deb ...
Unpacking libtool (2.4.7-5) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../070-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../071-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../072-libsub-override-perl_0.09-4_all.deb ...
Unpacking libsub-override-perl (0.09-4) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../073-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../074-dh-strip-nondeterminism_1.13.1-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../075-libelf1_0.188-2.1+rpi1_armhf.deb ...
Unpacking libelf1:armhf (0.188-2.1+rpi1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../076-dwz_0.15-1_armhf.deb ...
Unpacking dwz (0.15-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../077-gettext_0.21-12_armhf.deb ...
Unpacking gettext (0.21-12) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../078-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../079-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../080-debhelper_13.11.4_all.deb ...
Unpacking debhelper (13.11.4) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../081-python3-lib2to3_3.11.2-3_all.deb ...
Unpacking python3-lib2to3 (3.11.2-3) ...
Selecting previously unselected package python3-distutils.
Preparing to unpack .../082-python3-distutils_3.11.2-3_all.deb ...
Unpacking python3-distutils (3.11.2-3) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../083-dh-python_5.20230130_all.deb ...
Unpacking dh-python (5.20230130) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../084-icu-devtools_72.1-3_armhf.deb ...
Unpacking icu-devtools (72.1-3) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../085-zlib1g-dev_1%3a1.2.13.dfsg-1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.13.dfsg-1) ...
Selecting previously unselected package libbam-dev.
Preparing to unpack .../086-libbam-dev_0.1.19+dfsg-6_armhf.deb ...
Unpacking libbam-dev (0.1.19+dfsg-6) ...
Selecting previously unselected package libbamtools2.5.2:armhf.
Preparing to unpack .../087-libbamtools2.5.2_2.5.2+dfsg-4_armhf.deb ...
Unpacking libbamtools2.5.2:armhf (2.5.2+dfsg-4) ...
Selecting previously unselected package libbamtools-dev:armhf.
Preparing to unpack .../088-libbamtools-dev_2.5.2+dfsg-4_armhf.deb ...
Unpacking libbamtools-dev:armhf (2.5.2+dfsg-4) ...
Selecting previously unselected package libbwa-dev.
Preparing to unpack .../089-libbwa-dev_0.7.17-7_armhf.deb ...
Unpacking libbwa-dev (0.7.17-7) ...
Selecting previously unselected package libbz2-dev:armhf.
Preparing to unpack .../090-libbz2-dev_1.0.8-5+b2_armhf.deb ...
Unpacking libbz2-dev:armhf (1.0.8-5+b2) ...
Selecting previously unselected package libc++abi1-14:armhf.
Preparing to unpack .../091-libc++abi1-14_1%3a14.0.6-12+rpi1_armhf.deb ...
Unpacking libc++abi1-14:armhf (1:14.0.6-12+rpi1) ...
Selecting previously unselected package libc++1-14:armhf.
Preparing to unpack .../092-libc++1-14_1%3a14.0.6-12+rpi1_armhf.deb ...
Unpacking libc++1-14:armhf (1:14.0.6-12+rpi1) ...
Selecting previously unselected package libc++-14-dev:armhf.
Preparing to unpack .../093-libc++-14-dev_1%3a14.0.6-12+rpi1_armhf.deb ...
Unpacking libc++-14-dev:armhf (1:14.0.6-12+rpi1) ...
Selecting previously unselected package libc++-dev:armhf.
Preparing to unpack .../094-libc++-dev_1%3a14.0-55.6_armhf.deb ...
Unpacking libc++-dev:armhf (1:14.0-55.6) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../095-libcurl3-gnutls_7.88.1-7_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.88.1-7) ...
Selecting previously unselected package libnspr4:armhf.
Preparing to unpack .../096-libnspr4_2%3a4.35-1_armhf.deb ...
Unpacking libnspr4:armhf (2:4.35-1) ...
Selecting previously unselected package libnss3:armhf.
Preparing to unpack .../097-libnss3_2%3a3.87.1-1_armhf.deb ...
Unpacking libnss3:armhf (2:3.87.1-1) ...
Selecting previously unselected package nss-plugin-pem:armhf.
Preparing to unpack .../098-nss-plugin-pem_1.0.8+1-1_armhf.deb ...
Unpacking nss-plugin-pem:armhf (1.0.8+1-1) ...
Selecting previously unselected package libcurl3-nss:armhf.
Preparing to unpack .../099-libcurl3-nss_7.88.1-7_armhf.deb ...
Unpacking libcurl3-nss:armhf (7.88.1-7) ...
Selecting previously unselected package libcurl4-gnutls-dev:armhf.
Preparing to unpack .../100-libcurl4-gnutls-dev_7.88.1-7_armhf.deb ...
Unpacking libcurl4-gnutls-dev:armhf (7.88.1-7) ...
Selecting previously unselected package libdeflate0:armhf.
Preparing to unpack .../101-libdeflate0_1.14-1_armhf.deb ...
Unpacking libdeflate0:armhf (1.14-1) ...
Selecting previously unselected package libdeflate-dev:armhf.
Preparing to unpack .../102-libdeflate-dev_1.14-1_armhf.deb ...
Unpacking libdeflate-dev:armhf (1.14-1) ...
Selecting previously unselected package libffi-dev:armhf.
Preparing to unpack .../103-libffi-dev_3.4.4-1_armhf.deb ...
Unpacking libffi-dev:armhf (3.4.4-1) ...
Selecting previously unselected package libhtscodecs2:armhf.
Preparing to unpack .../104-libhtscodecs2_1.3.0-4_armhf.deb ...
Unpacking libhtscodecs2:armhf (1.3.0-4) ...
Selecting previously unselected package libhts3:armhf.
Preparing to unpack .../105-libhts3_1.16+ds-3_armhf.deb ...
Unpacking libhts3:armhf (1.16+ds-3) ...
Selecting previously unselected package liblzma-dev:armhf.
Preparing to unpack .../106-liblzma-dev_5.4.1-0.2_armhf.deb ...
Unpacking liblzma-dev:armhf (5.4.1-0.2) ...
Selecting previously unselected package libhts-dev:armhf.
Preparing to unpack .../107-libhts-dev_1.16+ds-3_armhf.deb ...
Unpacking libhts-dev:armhf (1.16+ds-3) ...
Selecting previously unselected package libicu-dev:armhf.
Preparing to unpack .../108-libicu-dev_72.1-3_armhf.deb ...
Unpacking libicu-dev:armhf (72.1-3) ...
Selecting previously unselected package libncurses-dev:armhf.
Preparing to unpack .../109-libncurses-dev_6.4-4_armhf.deb ...
Unpacking libncurses-dev:armhf (6.4-4) ...
Selecting previously unselected package libnlopt0:armhf.
Preparing to unpack .../110-libnlopt0_2.7.1-4+b2_armhf.deb ...
Unpacking libnlopt0:armhf (2.7.1-4+b2) ...
Selecting previously unselected package libnlopt-dev:armhf.
Preparing to unpack .../111-libnlopt-dev_2.7.1-4+b2_armhf.deb ...
Unpacking libnlopt-dev:armhf (2.7.1-4+b2) ...
Selecting previously unselected package libnlopt-cxx0:armhf.
Preparing to unpack .../112-libnlopt-cxx0_2.7.1-4+b2_armhf.deb ...
Unpacking libnlopt-cxx0:armhf (2.7.1-4+b2) ...
Selecting previously unselected package libnlopt-cxx-dev:armhf.
Preparing to unpack .../113-libnlopt-cxx-dev_2.7.1-4+b2_armhf.deb ...
Unpacking libnlopt-cxx-dev:armhf (2.7.1-4+b2) ...
Selecting previously unselected package libpfm4:armhf.
Preparing to unpack .../114-libpfm4_4.13.0-1_armhf.deb ...
Unpacking libpfm4:armhf (4.13.0-1) ...
Selecting previously unselected package libssw0:armhf.
Preparing to unpack .../115-libssw0_1.1-13_armhf.deb ...
Unpacking libssw0:armhf (1.1-13) ...
Selecting previously unselected package libssw-dev:armhf.
Preparing to unpack .../116-libssw-dev_1.1-13_armhf.deb ...
Unpacking libssw-dev:armhf (1.1-13) ...
Selecting previously unselected package libtinfo-dev:armhf.
Preparing to unpack .../117-libtinfo-dev_6.4-4_armhf.deb ...
Unpacking libtinfo-dev:armhf (6.4-4) ...
Selecting previously unselected package libxml2-dev:armhf.
Preparing to unpack .../118-libxml2-dev_2.9.14+dfsg-1.2_armhf.deb ...
Unpacking libxml2-dev:armhf (2.9.14+dfsg-1.2) ...
Selecting previously unselected package libz3-dev:armhf.
Preparing to unpack .../119-libz3-dev_4.8.12-3.1_armhf.deb ...
Unpacking libz3-dev:armhf (4.8.12-3.1) ...
Selecting previously unselected package llvm-14-runtime.
Preparing to unpack .../120-llvm-14-runtime_1%3a14.0.6-12+rpi1_armhf.deb ...
Unpacking llvm-14-runtime (1:14.0.6-12+rpi1) ...
Selecting previously unselected package llvm-runtime:armhf.
Preparing to unpack .../121-llvm-runtime_1%3a14.0-55.6_armhf.deb ...
Unpacking llvm-runtime:armhf (1:14.0-55.6) ...
Selecting previously unselected package llvm-14.
Preparing to unpack .../122-llvm-14_1%3a14.0.6-12+rpi1_armhf.deb ...
Unpacking llvm-14 (1:14.0.6-12+rpi1) ...
Selecting previously unselected package llvm.
Preparing to unpack .../123-llvm_1%3a14.0-55.6_armhf.deb ...
Unpacking llvm (1:14.0-55.6) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../124-python3-pkg-resources_66.1.1-1_all.deb ...
Unpacking python3-pkg-resources (66.1.1-1) ...
Selecting previously unselected package python3-pygments.
Preparing to unpack .../125-python3-pygments_2.14.0+dfsg-1_all.deb ...
Unpacking python3-pygments (2.14.0+dfsg-1) ...
Selecting previously unselected package llvm-14-tools.
Preparing to unpack .../126-llvm-14-tools_1%3a14.0.6-12+rpi1_armhf.deb ...
Unpacking llvm-14-tools (1:14.0.6-12+rpi1) ...
Selecting previously unselected package llvm-14-dev.
Preparing to unpack .../127-llvm-14-dev_1%3a14.0.6-12+rpi1_armhf.deb ...
Unpacking llvm-14-dev (1:14.0.6-12+rpi1) ...
Selecting previously unselected package llvm-dev.
Preparing to unpack .../128-llvm-dev_1%3a14.0-55.6_armhf.deb ...
Unpacking llvm-dev (1:14.0-55.6) ...
Selecting previously unselected package lynx-common.
Preparing to unpack .../129-lynx-common_2.9.0dev.12-1_all.deb ...
Unpacking lynx-common (2.9.0dev.12-1) ...
Selecting previously unselected package lynx.
Preparing to unpack .../130-lynx_2.9.0dev.12-1_armhf.deb ...
Unpacking lynx (2.9.0dev.12-1) ...
Selecting previously unselected package python3-all.
Preparing to unpack .../131-python3-all_3.11.2-1_armhf.deb ...
Unpacking python3-all (3.11.2-1) ...
Selecting previously unselected package python3-joblib.
Preparing to unpack .../132-python3-joblib_1.2.0-4_all.deb ...
Unpacking python3-joblib (1.2.0-4) ...
Selecting previously unselected package sbuild-build-depends-main-dummy.
Preparing to unpack .../133-sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up libhtscodecs2:armhf (1.3.0-4) ...
Setting up media-types (10.0.0) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libpsl5:armhf (0.21.2-1) ...
Setting up libicu72:armhf (72.1-3) ...
Setting up bsdextrautils (2.38.1-5) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libyaml-0-2:armhf (0.2.5-1) ...
Setting up bwa (0.7.17-7) ...
Setting up libpython3.11-stdlib:armhf (3.11.2-6) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libbrotli1:armhf (1.0.9-2+b3) ...
Setting up libnghttp2-14:armhf (1.52.0-1) ...
Setting up libmagic1:armhf (1:5.44-3) ...
Setting up libdeflate0:armhf (1.14-1) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up libnlopt0:armhf (2.7.1-4+b2) ...
Setting up file (1:5.44-3) ...
Setting up libffi-dev:armhf (3.4.4-1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libz3-4:armhf (4.8.12-3.1) ...
Setting up libc++abi1-14:armhf (1:14.0.6-12+rpi1) ...
Setting up libuv1:armhf (1.44.2-1+rpi1) ...
Setting up libpfm4:armhf (4.13.0-1) ...
Setting up libnspr4:armhf (2:4.35-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.4-4) ...
Setting up ruby-net-telnet (0.2.0-1) ...
Setting up libproc2-0:armhf (2:4.0.2-3) ...
Setting up autopoint (0.21-12) ...
Setting up libjsoncpp25:armhf (1.9.5-4) ...
Setting up icu-devtools (72.1-3) ...
Setting up lynx-common (2.9.0dev.12-1) ...
Setting up libbamtools2.5.2:armhf (2.5.2+dfsg-4) ...
Setting up libgc1:armhf (1:8.2.2-3) ...
Setting up autoconf (2.71-3) ...
Setting up libbwa-dev (0.7.17-7) ...
Setting up libnlopt-cxx0:armhf (2.7.1-4+b2) ...
Setting up ruby-webrick (1.8.1-1) ...
Setting up liblzma-dev:armhf (5.4.1-0.2) ...
Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ...
Setting up librhash0:armhf (1.4.3-3) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up procps (2:4.0.2-3) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libssh2-1:armhf (1.10.0-3+b1) ...
Setting up cmake-data (3.25.1-1) ...
Setting up libnlopt-dev:armhf (2.7.1-4+b2) ...
Setting up openssl (3.0.8-1) ...
Setting up libbsd0:armhf (0.11.7-2) ...
Setting up libdeflate-dev:armhf (1.14-1) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libssw0:armhf (1.1-13) ...
Setting up libicu-dev:armhf (72.1-3) ...
Setting up ruby-xmlrpc (0.3.2-2) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.2) ...
Setting up libpython3-stdlib:armhf (3.11.2-1) ...
Setting up libbz2-dev:armhf (1.0.8-5+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libz3-dev:armhf (4.8.12-3.1) ...
Setting up python3.11 (3.11.2-6) ...
Setting up libncurses-dev:armhf (6.4-4) ...
Setting up gettext (0.21-12) ...
Setting up libssw-dev:armhf (1.1-13) ...
Setting up libtool (2.4.7-5) ...
Setting up libarchive13:armhf (3.6.2-1) ...
Setting up libedit2:armhf (3.1-20221030-2) ...
Setting up libobjc4:armhf (12.2.0-14+rpi1) ...
Setting up libcurl3-gnutls:armhf (7.88.1-7) ...
Setting up python3 (3.11.2-1) ...
Setting up libnss3:armhf (2:3.87.1-1) ...
Setting up libcurl4-gnutls-dev:armhf (7.88.1-7) ...
Setting up libc++1-14:armhf (1:14.0.6-12+rpi1) ...
Setting up libc++-14-dev:armhf (1:14.0.6-12+rpi1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up libnlopt-cxx-dev:armhf (2.7.1-4+b2) ...
Setting up libxml2-dev:armhf (2.9.14+dfsg-1.2) ...
Setting up libbamtools-dev:armhf (2.5.2+dfsg-4) ...
Setting up libbam-dev (0.1.19+dfsg-6) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up libllvm14:armhf (1:14.0.6-12+rpi1) ...
Setting up libobjc-12-dev:armhf (12.2.0-14+rpi1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up libcurl4:armhf (7.88.1-7) ...
Setting up lynx (2.9.0dev.12-1) ...
update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode
Setting up llvm-14-linker-tools (1:14.0.6-12+rpi1) ...
Setting up libc++-dev:armhf (1:14.0-55.6) ...
Setting up python3-lib2to3 (3.11.2-3) ...
Setting up python3-pkg-resources (66.1.1-1) ...
Setting up python3-distutils (3.11.2-3) ...
Setting up dh-python (5.20230130) ...
Setting up libtinfo-dev:armhf (6.4-4) ...
Setting up libhts3:armhf (1.16+ds-3) ...
Setting up python3-joblib (1.2.0-4) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up nss-plugin-pem:armhf (1.0.8+1-1) ...
Setting up libhts-dev:armhf (1.16+ds-3) ...
Setting up libclang1-14 (1:14.0.6-12+rpi1) ...
Setting up python3-all (3.11.2-1) ...
Setting up python3-yaml (6.0-3+b1) ...
Setting up rubygems-integration (1.18) ...
Setting up man-db (2.11.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-pygments (2.14.0+dfsg-1) ...
Setting up llvm-14-runtime (1:14.0.6-12+rpi1) ...
Setting up llvm-runtime:armhf (1:14.0-55.6) ...
Setting up libclang-common-14-dev (1:14.0.6-12+rpi1) ...
Setting up libclang-cpp14 (1:14.0.6-12+rpi1) ...
Setting up libcurl3-nss:armhf (7.88.1-7) ...
Setting up cmake (3.25.1-1) ...
Setting up clang-format-14 (1:14.0.6-12+rpi1) ...
Setting up llvm-14 (1:14.0.6-12+rpi1) ...
Setting up llvm-14-tools (1:14.0.6-12+rpi1) ...
Setting up clang-format:armhf (1:14.0-55.6) ...
Setting up clang-14 (1:14.0.6-12+rpi1) ...
Setting up clang-tools-14 (1:14.0.6-12+rpi1) ...
Setting up debhelper (13.11.4) ...
Setting up clang-tidy-14 (1:14.0.6-12+rpi1) ...
Setting up llvm (1:14.0-55.6) ...
Setting up clang-tools:armhf (1:14.0-55.6) ...
Setting up llvm-14-dev (1:14.0.6-12+rpi1) ...
Setting up llvm-dev (1:14.0-55.6) ...
Setting up clang-tidy (1:14.0-55.6) ...
Setting up rake (13.0.6-3) ...
Setting up libruby:armhf (1:3.1) ...
Setting up ruby-sdbm:armhf (1.0.0-5+rpi1) ...
Setting up libruby3.1:armhf (3.1.2-7) ...
Setting up ruby3.1 (3.1.2-7) ...
Setting up ruby (1:3.1) ...
Setting up ruby-asciidoctor (2.0.18-2) ...
Setting up asciidoctor (2.0.18-2) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up ruby-rubygems (3.3.15-2) ...
Processing triggers for libc-bin (2.36-8+rpi1) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.40-2+rpi1 dpkg-dev_1.21.21+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-8+rpi1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.0.12-1+rpi1+b1
Package versions: adduser_3.131 apt_2.6.0 asciidoctor_2.0.18-2 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-12 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2+rpi1 binutils-arm-linux-gnueabihf_2.40-2+rpi1 binutils-common_2.40-2+rpi1 bsdextrautils_2.38.1-5 bsdutils_1:2.38.1-5 build-essential_12.9 bwa_0.7.17-7 bzip2_1.0.8-5+b2 ca-certificates_20230311 clang-14_1:14.0.6-12+rpi1 clang-format_1:14.0-55.6 clang-format-14_1:14.0.6-12+rpi1 clang-tidy_1:14.0-55.6 clang-tidy-14_1:14.0.6-12+rpi1 clang-tools_1:14.0-55.6 clang-tools-14_1:14.0.6-12+rpi1 cmake_3.25.1-1 cmake-data_3.25.1-1 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-14+rpi1 dash_0.5.12-2 debconf_1.5.82 debhelper_13.11.4 debianutils_5.7-0.4 dh-autoreconf_20 dh-python_5.20230130 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1.1 dpkg_1.21.21+rpi1 dpkg-dev_1.21.21+rpi1 dwz_0.15-1 e2fsprogs_1.46.6-1 fakeroot_1.31-1.1 file_1:5.44-3 findutils_4.9.0-4 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-12 gettext-base_0.21-12 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.8-5 groff-base_1.22.4-10 gzip_1.12-1 hostname_3.23+nmu1 icu-devtools_72.1-3 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-1 libacl1_2.3.1-3 libapt-pkg6.0_2.6.0 libarchive-zip-perl_1.68-1 libarchive13_3.6.2-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.5-5 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.0.9-1 libaudit1_1:3.0.9-1 libbam-dev_0.1.19+dfsg-6 libbamtools-dev_2.5.2+dfsg-4 libbamtools2.5.2_2.5.2+dfsg-4 libbinutils_2.40-2+rpi1 libblkid1_2.38.1-5 libbrotli1_1.0.9-2+b3 libbsd0_0.11.7-2 libbwa-dev_0.7.17-7 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc++-14-dev_1:14.0.6-12+rpi1 libc++-dev_1:14.0-55.6 libc++1-14_1:14.0.6-12+rpi1 libc++abi1-14_1:14.0.6-12+rpi1 libc-bin_2.36-8+rpi1 libc-dev-bin_2.36-8+rpi1 libc6_2.36-8+rpi1 libc6-dev_2.36-8+rpi1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-3 libcap2-bin_1:2.66-3 libcc1-0_12.2.0-14+rpi1 libclang-common-14-dev_1:14.0.6-12+rpi1 libclang-cpp14_1:14.0.6-12+rpi1 libclang1-14_1:14.0.6-12+rpi1 libcom-err2_1.46.6-1 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libctf-nobfd0_2.40-2+rpi1 libctf0_2.40-2+rpi1 libcurl3-gnutls_7.88.1-7 libcurl3-nss_7.88.1-7 libcurl4_7.88.1-7 libcurl4-gnutls-dev_7.88.1-7 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.268 libdebhelper-perl_13.11.4 libdeflate-dev_1.14-1 libdeflate0_1.14-1 libdpkg-perl_1.21.21+rpi1 libedit2_3.1-20221030-2 libelf1_0.188-2.1+rpi1 libexpat1_2.5.0-1 libext2fs2_1.46.6-1 libfakeroot_1.31-1.1 libffi-dev_3.4.4-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libgc1_1:8.2.2-3 libgcc-12-dev_12.2.0-14+rpi1 libgcc-s1_12.2.0-14+rpi1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.9-1 libgomp1_12.2.0-14+rpi1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libhts-dev_1.16+ds-3 libhts3_1.16+ds-3 libhtscodecs2_1.3.0-4 libicu-dev_72.1-3 libicu72_72.1-3 libidn2-0_2.3.3-1 libisl23_0.25-1 libjansson4_2.14-2 libjsoncpp25_1.9.5-4 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libksba8_1.6.3-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 libllvm14_1:14.0.6-12+rpi1 liblz4-1_1.9.4-1+rpi1 liblzma-dev_5.4.1-0.2 liblzma5_5.4.1-0.2 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmd0_1.0.4-2 libmount1_2.38.1-5 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libncurses-dev_6.4-4 libncurses6_6.4-4 libncursesw6_6.4-4 libnettle8_3.8.1-2 libnghttp2-14_1.52.0-1 libnlopt-cxx-dev_2.7.1-4+b2 libnlopt-cxx0_2.7.1-4+b2 libnlopt-dev_2.7.1-4+b2 libnlopt0_2.7.1-4+b2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnspr4_2:4.35-1 libnss3_2:3.87.1-1 libobjc-12-dev_12.2.0-14+rpi1 libobjc4_12.2.0-14+rpi1 libp11-kit0_0.24.1-2 libpam-cap_1:2.66-3 libpam-modules_1.5.2-6 libpam-modules-bin_1.5.2-6 libpam-runtime_1.5.2-6 libpam0g_1.5.2-6 libpcre2-8-0_10.42-1 libpcre3_2:8.39-15 libperl5.32_5.32.1-6 libperl5.36_5.36.0-7 libpfm4_4.13.0-1 libpipeline1_1.5.7-1 libproc2-0_2:4.0.2-3 libpsl5_0.21.2-1 libpython3-stdlib_3.11.2-1 libpython3.11-minimal_3.11.2-6 libpython3.11-stdlib_3.11.2-6 libreadline8_8.2-1.3 librhash0_1.4.3-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libruby_1:3.1 libruby3.1_3.1.2-7 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.4-1+b2 libsemanage-common_3.4-1 libsemanage2_3.4-1+b2 libsepol1_3.1-1 libsepol2_3.4-2 libsmartcols1_2.38.1-5 libsqlite3-0_3.40.1-2 libss2_1.46.6-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.8-1 libssw-dev_1.1-13 libssw0_1.1-13 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 libsub-override-perl_0.09-4 libsystemd0_252.6-1+rpi1 libtasn1-6_4.19.0-2 libtinfo-dev_6.4-4 libtinfo6_6.4-4 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libubsan1_12.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_252.6-1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-5 libuv1_1.44.2-1+rpi1 libxml2_2.9.14+dfsg-1.2 libxml2-dev_2.9.14+dfsg-1.2 libxxhash0_0.8.1-1 libyaml-0-2_0.2.5-1 libz3-4_4.8.12-3.1 libz3-dev_4.8.12-3.1 libzstd1_1.5.4+dfsg2-3 linux-libc-dev_6.0.12-1+rpi1+b1 llvm_1:14.0-55.6 llvm-14_1:14.0.6-12+rpi1 llvm-14-dev_1:14.0.6-12+rpi1 llvm-14-linker-tools_1:14.0.6-12+rpi1 llvm-14-runtime_1:14.0.6-12+rpi1 llvm-14-tools_1:14.0.6-12+rpi1 llvm-dev_1:14.0-55.6 llvm-runtime_1:14.0-55.6 login_1:4.13+dfsg1-1 logsave_1.46.6-1 lsb-base_11.4+rpi1 lynx_2.9.0dev.12-1 lynx-common_2.9.0dev.12-1 m4_1.4.19-3 make_4.3-4.1 man-db_2.11.2-2 mawk_1.3.4.20200120-3.1 media-types_10.0.0 mount_2.38.1-5 nano_7.2-1 ncurses-base_6.4-4 ncurses-bin_6.4-4 nss-plugin-pem_1.0.8+1-1 openssl_3.0.8-1 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.32_5.32.1-6 perl-modules-5.36_5.36.0-7 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 procps_2:4.0.2-3 python3_3.11.2-1 python3-all_3.11.2-1 python3-distutils_3.11.2-3 python3-joblib_1.2.0-4 python3-lib2to3_3.11.2-3 python3-minimal_3.11.2-1 python3-pkg-resources_66.1.1-1 python3-pygments_2.14.0+dfsg-1 python3-yaml_6.0-3+b1 python3.11_3.11.2-6 python3.11-minimal_3.11.2-6 rake_13.0.6-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 ruby_1:3.1 ruby-asciidoctor_2.0.18-2 ruby-net-telnet_0.2.0-1 ruby-rubygems_3.3.15-2 ruby-sdbm_1.0.0-5+rpi1 ruby-webrick_1.8.1-1 ruby-xmlrpc_0.3.2-2 ruby3.1_3.1.2-7 rubygems-integration_1.18 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.17+nmu1 sgml-base_1.31 sysvinit-utils_3.06-2 tar_1.34+dfsg-1 tzdata_2022g-7 util-linux_2.38.1-5 util-linux-extra_2.38.1-5 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: spades
Binary: spades
Architecture: any
Version: 3.15.5+dfsg-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Sascha Steinbiss <satta@debian.org>, Michael R. Crusoe <crusoe@debian.org>, Alexandre Mestiashvili <mestia@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: http://cab.spbu.ru/software/spades/
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/spades
Vcs-Git: https://salsa.debian.org/med-team/spades.git
Testsuite: autopkgtest
Testsuite-Triggers: bwa
Build-Depends: debhelper-compat (= 13), dh-python, clang-format, clang-tidy, clang-tools, cmake, python3-all, zlib1g-dev, libbz2-dev, libbam-dev, libbamtools-dev, libc++-dev, libhts-dev, libnlopt-dev, libnlopt-cxx-dev, libssw-dev, llvm-dev, python3-yaml, python3-joblib, asciidoctor, bwa, libbwa-dev, lynx
Package-List:
spades deb science optional arch=any
Checksums-Sha1:
3632ecbbb4aa79d6ddc62a7ae49ca7a62304071b 9903196 spades_3.15.5+dfsg.orig.tar.xz
0c402e8c94e309bf229ca2a4a1336f7b4ff4a372 30384 spades_3.15.5+dfsg-2.debian.tar.xz
Checksums-Sha256:
45c205c1b2f2b868246e69526f7a84e3fe7fd5ebe3c846501e9a6c14c12fa975 9903196 spades_3.15.5+dfsg.orig.tar.xz
4ab602abc1906f6a9608d44203305f297bfafe2a3d9fbedc1fa9a0e45bfe8fb6 30384 spades_3.15.5+dfsg-2.debian.tar.xz
Files:
a54a5740761cad4460cfae855ecbe4c1 9903196 spades_3.15.5+dfsg.orig.tar.xz
f354e98d3e3f307c252ce8b5e290bbc3 30384 spades_3.15.5+dfsg-2.debian.tar.xz
Dgit: 90daf06770fd60a7d6273c63597cde0dbdc56538 debian archive/debian/3.15.5+dfsg-2 https://git.dgit.debian.org/spades
-----BEGIN PGP SIGNATURE-----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=Solw
-----END PGP SIGNATURE-----
gpgv: Signature made Sun Oct 23 16:50:26 2022 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./spades_3.15.5+dfsg-2.dsc: no acceptable signature found
dpkg-source: info: extracting spades in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking spades_3.15.5+dfsg.orig.tar.xz
dpkg-source: info: unpacking spades_3.15.5+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 0002_use_debian_packaged_python-joblib.patch
dpkg-source: info: applying 0003_accept-system-bwa.patch
dpkg-source: info: applying 0101_cmake_ignore_removed_python-yaml.patch
dpkg-source: info: applying 0102_cmake_ignore_removed_python-joblib.patch
dpkg-source: info: applying 0103_use-debian-packaged-bwa.patch
dpkg-source: info: applying 0114_use_debian_provided_libs.patch
dpkg-source: info: applying 0118_adjust_spades_home_again.patch
dpkg-source: info: applying fix-bool-cast
dpkg-source: info: applying python3.patch
dpkg-source: info: applying yaml_load.patch
dpkg-source: info: applying debuginfo.patch
dpkg-source: info: applying debian_bwa_zlib.patch
dpkg-source: info: applying workdir_for_test.patch
dpkg-source: info: applying disable_local_convertutf.patch
dpkg-source: info: applying fix-sigill-on-non-popcnt-cpus.patch
dpkg-source: info: applying fix-privacy-breaches.patch
dpkg-source: info: applying typos.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=a60e7cfcb02f4450b675ea47f6e0e86f
JOURNAL_STREAM=8:36092
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-1262040f-7ff5-4e07-8c32-fe179e9b1e69
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c40888
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package spades
dpkg-buildpackage: info: source version 3.15.5+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --sourcedirectory=assembler/src --buildsystem=cmake
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
find . -name "*.pyc" -delete
rm -rf /<<PKGBUILDDIR>>/debian/man_src/*.html /<<PKGBUILDDIR>>/debian/man_src/*.?
rm -rf /<<PKGBUILDDIR>>/debian/man
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--sourcedirectory=assembler/src -O--buildsystem=cmake
debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean -X.orig
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules binary-arch
dh binary-arch --with python3 --sourcedirectory=assembler/src --buildsystem=cmake
dh_update_autotools_config -a -O--sourcedirectory=assembler/src -O--buildsystem=cmake
dh_autoreconf -a -O--sourcedirectory=assembler/src -O--buildsystem=cmake
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DBoost_NO_BOOST_CMAKE=TRUE
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DBoost_NO_BOOST_CMAKE=TRUE ../assembler/src
CMake Warning (dev) in CMakeLists.txt:
No project() command is present. The top-level CMakeLists.txt file must
contain a literal, direct call to the project() command. Add a line of
code such as
project(ProjectName)
near the top of the file, but after cmake_minimum_required().
CMake is pretending there is a "project(Project)" command on the first
line.
This warning is for project developers. Use -Wno-dev to suppress it.
-- The C compiler identification is GNU 12.2.0
-- The CXX compiler identification is GNU 12.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13")
-- Found BZip2: /usr/lib/arm-linux-gnueabihf/libbz2.so (found version "1.0.8")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Looking for wsyncup in /usr/lib/arm-linux-gnueabihf/libncurses.so
-- Looking for wsyncup in /usr/lib/arm-linux-gnueabihf/libncurses.so - found
-- Looking for wsyncup in /usr/lib/arm-linux-gnueabihf/libcurses.so
-- Looking for wsyncup in /usr/lib/arm-linux-gnueabihf/libcurses.so - found
-- Found Boost: /<<PKGBUILDDIR>>/assembler/ext/include (found version "1.63.0")
Making Release Configuration...
Building SPAdes from N/A, sha: N/A
-- Override standard malloc (MI_OVERRIDE=ON)
-- Enable abort() calls on memory allocation failure (MI_XMALLOC=ON)
-- Enable printing of error and warning messages by default (MI_SHOW_ERRORS=ON)
-- Use the C++ compiler to compile (MI_USE_CXX=ON)
--
-- Library base name: mimalloc-none
-- Build type : none
-- Compiler : /usr/bin/c++
-- Install directory: /usr/lib/mimalloc-1.6
-- Build targets : object
--
-- Looking for open
-- Looking for open - found
-- Looking for execinfo.h
-- Looking for execinfo.h - found
-- Looking for signal.h
-- Looking for signal.h - found
-- Looking for sys/stat.h
-- Looking for sys/stat.h - found
-- Looking for cxxabi.h
-- Looking for cxxabi.h - not found
-- Looking for dlfcn.h
-- Looking for dlfcn.h - found
-- Looking for mach/mach.h
-- Looking for mach/mach.h - not found
-- Looking for link.h
-- Looking for link.h - found
-- Looking for unistd.h
-- Looking for unistd.h - found
-- Looking for sys/mman.h
-- Looking for sys/mman.h - found
-- Looking for fcntl.h
-- Looking for fcntl.h - found
-- Looking for malloc/malloc.h
-- Looking for malloc/malloc.h - not found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for sys/time.h
-- Looking for sys/time.h - found
-- Looking for sys/resource.h
-- Looking for sys/resource.h - found
-- Looking for backtrace
-- Looking for backtrace - found
-- backtrace facility detected in default set of libraries
-- Found Backtrace: /usr/include
-- Looking for futimens
-- Looking for futimens - found
-- Looking for futimes
-- Looking for futimes - found
-- Looking for getrusage
-- Looking for getrusage - found
-- Looking for getpagesize
-- Looking for getpagesize - found
-- Looking for sysconf
-- Looking for sysconf - found
-- Looking for mallinfo
-- Looking for mallinfo - found
-- Looking for mallctl
-- Looking for mallctl - not found
-- Looking for malloc_zone_statistics
-- Looking for malloc_zone_statistics - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Looking for pthread_getspecific in pthread
-- Looking for pthread_getspecific in pthread - found
-- Looking for pthread_rwlock_init in pthread
-- Looking for pthread_rwlock_init in pthread - found
-- Looking for pthread_mutex_lock in pthread
-- Looking for pthread_mutex_lock in pthread - found
-- Looking for dlopen in dl
-- Looking for dlopen in dl - found
-- Looking for clock_gettime in rt
-- Looking for clock_gettime in rt - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Performing Test HAVE_FFI_CALL
-- Performing Test HAVE_FFI_CALL - Success
-- Found FFI: /usr/lib/arm-linux-gnueabihf/libffi.so
-- Performing Test Terminfo_LINKABLE
-- Performing Test Terminfo_LINKABLE - Success
-- Found Terminfo: /usr/lib/arm-linux-gnueabihf/libtinfo.so
-- Found LibXml2: /usr/lib/arm-linux-gnueabihf/libxml2.so (found version "2.9.14")
-- Looking for include file endian.h
-- Looking for include file endian.h - found
-- Looking for include file inttypes.h
-- Looking for include file inttypes.h - found
-- Looking for include file stdint.h
-- Looking for include file stdint.h - found
-- Looking for include file strings.h
-- Looking for include file strings.h - found
-- Looking for include file sys/types.h
-- Looking for include file sys/types.h - found
-- Looking for include file sys/param.h
-- Looking for include file sys/param.h - found
-- Looking for include file sys/sysctl.h
-- Looking for include file sys/sysctl.h - not found
-- Looking for include file emmintrin.h
-- Looking for include file emmintrin.h - not found
-- Looking for include file pmmintrin.h
-- Looking for include file pmmintrin.h - not found
-- Looking for include file xmmintrin.h
-- Looking for include file xmmintrin.h - not found
-- Looking for chmod
-- Looking for chmod - found
-- Looking for fseeko
-- Looking for fseeko - found
-- Looking for fstat
-- Looking for fstat - found
-- Looking for getcwd
-- Looking for getcwd - found
-- Looking for getpid
-- Looking for getpid - found
-- Looking for mkstemp
-- Looking for mkstemp - found
-- Looking for popen
-- Looking for popen - found
-- Looking for putenv
-- Looking for putenv - found
-- Looking for stat
-- Looking for stat - found
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for sysctl
-- Looking for sysctl - not found
-- Looking for times
-- Looking for times - found
-- Looking for erfc
-- Looking for erfc - not found
CMake Deprecation Warning at /<<PKGBUILDDIR>>/assembler/ext/src/googletest/CMakeLists.txt:4 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
CMake Deprecation Warning at /<<PKGBUILDDIR>>/assembler/ext/src/googletest/googletest/CMakeLists.txt:56 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- Found PythonInterp: /usr/bin/python3 (found version "3.11.2")
CMake Deprecation Warning at projects/mts/CMakeLists.txt:8 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- all debruijn_test include_test
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" all debruijn_test include_test VERBOSE=1
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>>/assembler/src -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/build.make ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/depend
make -f ext/bamtools/api/CMakeFiles/BamTools.dir/build.make ext/bamtools/api/CMakeFiles/BamTools.dir/depend
make -f ext/cppformat/CMakeFiles/format.dir/build.make ext/cppformat/CMakeFiles/format.dir/depend
make -f ext/getopt_pp/CMakeFiles/getopt_pp.dir/build.make ext/getopt_pp/CMakeFiles/getopt_pp.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/assembler/src /<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/ConsensusCore /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/assembler/src /<<PKGBUILDDIR>>/assembler/ext/src/cppformat /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/cppformat /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/cppformat/CMakeFiles/format.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/assembler/src /<<PKGBUILDDIR>>/assembler/ext/src/getopt_pp /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/getopt_pp /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/getopt_pp/CMakeFiles/getopt_pp.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/assembler/src /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f ext/cppformat/CMakeFiles/format.dir/build.make ext/cppformat/CMakeFiles/format.dir/build
make -f ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/build.make ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/build
make -f ext/getopt_pp/CMakeFiles/getopt_pp.dir/build.make ext/getopt_pp/CMakeFiles/getopt_pp.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f ext/bamtools/api/CMakeFiles/BamTools.dir/build.make ext/bamtools/api/CMakeFiles/BamTools.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 0%] Building CXX object ext/cppformat/CMakeFiles/format.dir/format.cc.o
[ 0%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/AffineAlignment.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/cppformat && /usr/bin/c++ -DFMT_USE_FILE_DESCRIPTORS=1 -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/cppformat -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -Wextra -pedantic -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/cppformat/CMakeFiles/format.dir/format.cc.o -MF CMakeFiles/format.dir/format.cc.o.d -o CMakeFiles/format.dir/format.cc.o -c /<<PKGBUILDDIR>>/assembler/ext/src/cppformat/format.cc
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore -I/<<PKGBUILDDIR>>/assembler/src/../ext/include/ConsensusCore -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/AffineAlignment.cpp.o -MF CMakeFiles/ConsensusCore.dir/AffineAlignment.cpp.o.d -o CMakeFiles/ConsensusCore.dir/AffineAlignment.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore/AffineAlignment.cpp
[ 1%] Building CXX object ext/getopt_pp/CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/getopt_pp && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/getopt_pp/CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o -MF CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o.d -o CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/getopt_pp/getopt_pp.cpp
[ 1%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o -MF CMakeFiles/BamTools.dir/BamAlignment.cpp.o.d -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/BamAlignment.cpp
[ 1%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -MF CMakeFiles/BamTools.dir/BamMultiReader.cpp.o.d -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/BamMultiReader.cpp
[ 1%] Linking CXX static library libgetopt_pp.a
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/getopt_pp && /usr/bin/cmake -P CMakeFiles/getopt_pp.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/getopt_pp && /usr/bin/cmake -E cmake_link_script CMakeFiles/getopt_pp.dir/link.txt --verbose=1
/usr/bin/ar qc libgetopt_pp.a CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o
[ 1%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Coverage.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore -I/<<PKGBUILDDIR>>/assembler/src/../ext/include/ConsensusCore -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Coverage.cpp.o -MF CMakeFiles/ConsensusCore.dir/Coverage.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Coverage.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore/Coverage.cpp
/usr/bin/ranlib libgetopt_pp.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 1%] Built target getopt_pp
make -f ext/llvm/CMakeFiles/llvm-support.dir/build.make ext/llvm/CMakeFiles/llvm-support.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/assembler/src /<<PKGBUILDDIR>>/assembler/ext/src/llvm /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm/CMakeFiles/llvm-support.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f ext/llvm/CMakeFiles/llvm-support.dir/build.make ext/llvm/CMakeFiles/llvm-support.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 1%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/APFloat.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/APFloat.cpp.o -MF CMakeFiles/llvm-support.dir/APFloat.cpp.o.d -o CMakeFiles/llvm-support.dir/APFloat.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/APFloat.cpp
[ 1%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Mutation.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore -I/<<PKGBUILDDIR>>/assembler/src/../ext/include/ConsensusCore -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Mutation.cpp.o -MF CMakeFiles/ConsensusCore.dir/Mutation.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Mutation.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore/Mutation.cpp
[ 1%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/BamReader.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/BamReader.cpp.o -MF CMakeFiles/BamTools.dir/BamReader.cpp.o.d -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/BamReader.cpp
[ 1%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o -MF CMakeFiles/BamTools.dir/BamWriter.cpp.o.d -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/BamWriter.cpp
[ 1%] Building CXX object ext/cppformat/CMakeFiles/format.dir/posix.cc.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/cppformat && /usr/bin/c++ -DFMT_USE_FILE_DESCRIPTORS=1 -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/cppformat -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -Wextra -pedantic -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/cppformat/CMakeFiles/format.dir/posix.cc.o -MF CMakeFiles/format.dir/posix.cc.o.d -o CMakeFiles/format.dir/posix.cc.o -c /<<PKGBUILDDIR>>/assembler/ext/src/cppformat/posix.cc
[ 2%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o -MF CMakeFiles/BamTools.dir/SamHeader.cpp.o.d -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/SamHeader.cpp
[ 2%] Linking CXX static library libformat.a
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/cppformat && /usr/bin/cmake -P CMakeFiles/format.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/cppformat && /usr/bin/cmake -E cmake_link_script CMakeFiles/format.dir/link.txt --verbose=1
/usr/bin/ar qc libformat.a CMakeFiles/format.dir/format.cc.o CMakeFiles/format.dir/posix.cc.o
/usr/bin/ranlib libformat.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 2%] Built target format
[ 3%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/PairwiseAlignment.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore -I/<<PKGBUILDDIR>>/assembler/src/../ext/include/ConsensusCore -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/PairwiseAlignment.cpp.o -MF CMakeFiles/ConsensusCore.dir/PairwiseAlignment.cpp.o.d -o CMakeFiles/ConsensusCore.dir/PairwiseAlignment.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore/PairwiseAlignment.cpp
[ 3%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o -MF CMakeFiles/BamTools.dir/SamProgram.cpp.o.d -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/SamProgram.cpp
[ 3%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -MF CMakeFiles/BamTools.dir/SamProgramChain.cpp.o.d -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/SamProgramChain.cpp
[ 3%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -MF CMakeFiles/BamTools.dir/SamReadGroup.cpp.o.d -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/SamReadGroup.cpp
[ 3%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Sequence.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore -I/<<PKGBUILDDIR>>/assembler/src/../ext/include/ConsensusCore -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Sequence.cpp.o -MF CMakeFiles/ConsensusCore.dir/Sequence.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Sequence.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore/Sequence.cpp
make -f ext/gqf/CMakeFiles/gqf.dir/build.make ext/gqf/CMakeFiles/gqf.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/assembler/src /<<PKGBUILDDIR>>/assembler/ext/src/gqf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/gqf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/gqf/CMakeFiles/gqf.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f ext/gqf/CMakeFiles/gqf.dir/build.make ext/gqf/CMakeFiles/gqf.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 3%] Building C object ext/gqf/CMakeFiles/gqf.dir/gqf.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/gqf && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/gqf/CMakeFiles/gqf.dir/gqf.c.o -MF CMakeFiles/gqf.dir/gqf.c.o.d -o CMakeFiles/gqf.dir/gqf.c.o -c /<<PKGBUILDDIR>>/assembler/ext/src/gqf/gqf.c
[ 3%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -MF CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/SamReadGroupDictionary.cpp
/<<PKGBUILDDIR>>/assembler/ext/src/gqf/gqf.c: In function 'qf_deserialize':
/<<PKGBUILDDIR>>/assembler/ext/src/gqf/gqf.c:1606:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
1606 | fread(qf->metadata, sizeof(qfmetadata), 1, fin);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/assembler/ext/src/gqf/gqf.c:1615:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
1615 | fread(qf->blocks, qf->metadata->size, 1, fin);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 3%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Utils.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore -I/<<PKGBUILDDIR>>/assembler/src/../ext/include/ConsensusCore -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Utils.cpp.o -MF CMakeFiles/ConsensusCore.dir/Utils.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Utils.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore/Utils.cpp
[ 3%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Version.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore -I/<<PKGBUILDDIR>>/assembler/src/../ext/include/ConsensusCore -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Version.cpp.o -MF CMakeFiles/ConsensusCore.dir/Version.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Version.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore/Version.cpp
[ 3%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/APInt.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/APInt.cpp.o -MF CMakeFiles/llvm-support.dir/APInt.cpp.o.d -o CMakeFiles/llvm-support.dir/APInt.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/APInt.cpp
[ 4%] Linking C static library libgqf.a
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/gqf && /usr/bin/cmake -P CMakeFiles/gqf.dir/cmake_clean_target.cmake
[ 5%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o -MF CMakeFiles/BamTools.dir/SamSequence.cpp.o.d -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/SamSequence.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/gqf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gqf.dir/link.txt --verbose=1
/usr/bin/ar qc libgqf.a CMakeFiles/gqf.dir/gqf.c.o
/usr/bin/ranlib libgqf.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 5%] Built target gqf
[ 5%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore -I/<<PKGBUILDDIR>>/assembler/src/../ext/include/ConsensusCore -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o -MF CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore/Matrix/DenseMatrix.cpp
In file included from /<<PKGBUILDDIR>>/assembler/ext/src/ConsensusCore/Matrix/DenseMatrix.cpp:39:
/<<PKGBUILDDIR>>/assembler/src/../ext/include/ConsensusCore/Matrix/DenseMatrix.hpp:40:10: fatal error: xmmintrin.h: No such file or directory
40 | #include <xmmintrin.h>
| ^~~~~~~~~~~~~
compilation terminated.
make[4]: *** [ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/build.make:177: ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o] Error 1
make[4]: *** Waiting for unfinished jobs....
[ 5%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Atomic.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Atomic.cpp.o -MF CMakeFiles/llvm-support.dir/Atomic.cpp.o.d -o CMakeFiles/llvm-support.dir/Atomic.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/Atomic.cpp
[ 6%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o -MF CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o.d -o CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/CrashRecoveryContext.cpp
[ 6%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -MF CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/SamSequenceDictionary.cpp
[ 6%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/bam/BamHeader_p.cpp
make -f ext/edlib/CMakeFiles/edlib.dir/build.make ext/edlib/CMakeFiles/edlib.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>>/assembler/src /<<PKGBUILDDIR>>/assembler/ext/src/edlib /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/edlib /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/edlib/CMakeFiles/edlib.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f ext/edlib/CMakeFiles/edlib.dir/build.make ext/edlib/CMakeFiles/edlib.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 6%] Building CXX object ext/edlib/CMakeFiles/edlib.dir/edlib.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/edlib && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/edlib/CMakeFiles/edlib.dir/edlib.cpp.o -MF CMakeFiles/edlib.dir/edlib.cpp.o.d -o CMakeFiles/edlib.dir/edlib.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/edlib/edlib.cpp
[ 6%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/bam/BamMultiReader_p.cpp
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: *** [CMakeFiles/Makefile2:1250: ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/all] Error 2
make[3]: *** Waiting for unfinished jobs....
[ 6%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Debug.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Debug.cpp.o -MF CMakeFiles/llvm-support.dir/Debug.cpp.o.d -o CMakeFiles/llvm-support.dir/Debug.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/Debug.cpp
[ 6%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/bam/BamRandomAccessController_p.cpp
[ 6%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Errno.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Errno.cpp.o -MF CMakeFiles/llvm-support.dir/Errno.cpp.o.d -o CMakeFiles/llvm-support.dir/Errno.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/Errno.cpp
[ 6%] Linking CXX static library libedlib.a
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/edlib && /usr/bin/cmake -P CMakeFiles/edlib.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/edlib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edlib.dir/link.txt --verbose=1
/usr/bin/ar qc libedlib.a CMakeFiles/edlib.dir/edlib.cpp.o
/usr/bin/ranlib libedlib.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 6%] Built target edlib
[ 7%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/bam/BamReader_p.cpp
[ 7%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Error.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Error.cpp.o -MF CMakeFiles/llvm-support.dir/Error.cpp.o.d -o CMakeFiles/llvm-support.dir/Error.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/Error.cpp
[ 7%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/bam/BamWriter_p.cpp
[ 7%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamIndexFactory_p.cpp
[ 7%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp
[ 7%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp
[ 9%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/BamDeviceFactory_p.cpp
[ 9%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o -MF CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o.d -o CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/ErrorHandling.cpp
[ 9%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/BamFile_p.cpp
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/assembler/ext/include/bamtools/api/BamAux.h:18,
from /<<PKGBUILDDIR>>/assembler/ext/include/bamtools/api/BamAlignment.h:14,
from /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BtiBlock&}; _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiBlock>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
inlined from 'void BamTools::Internal::BamToolsIndex::ReadBlocks(const BamTools::Internal::BtiReferenceSummary&, BamTools::Internal::BtiBlockVector&)' at /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp:537:25:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:21:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {BamTools::Internal::BtiReferenceSummary}; _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiReferenceSummary>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {BamTools::Internal::BtiReferenceSummary}; _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void BamTools::Internal::BamToolsIndex::InitializeFileSummary(const int&)' at /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp:359:37:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiReferenceSummary*, std::vector<BamTools::Internal::BtiReferenceSummary> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp:191:46:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp:231:42:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp:249:38:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
[ 9%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/BgzfStream_p.cpp
[ 9%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/ByteArray_p.cpp
[ 10%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/FoldingSet.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/FoldingSet.cpp.o -MF CMakeFiles/llvm-support.dir/FoldingSet.cpp.o.d -o CMakeFiles/llvm-support.dir/FoldingSet.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/FoldingSet.cpp
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)' at /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:788:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)' at /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:788:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/assembler/ext/include/bamtools/api/BamAux.h:18,
from /<<PKGBUILDDIR>>/assembler/ext/include/bamtools/api/BamAlignment.h:14,
from /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BaiAlignmentChunk&}; _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BaiAlignmentChunk>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
inlined from 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)' at /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:587:27:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
inlined from 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)' at /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:608:35:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 10%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/ILocalIODevice_p.cpp
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
inlined from 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)' at /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:731:28:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
inlined from 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)' at /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:724:28:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
523 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
inlined from 'void BamTools::Internal::BamStandardIndex::SaveLinearOffsetEntry(BamTools::Internal::BaiLinearOffsetVector&, const int&, const int&, const uint64_t&)' at /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:754:23:
/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1032 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/ParallelBgzfStream_p.cpp
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<long long int>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void BamTools::Internal::BamStandardIndex::CalculateCandidateOffsets(const BamTools::Internal::BaiReferenceSummary&, const uint64_t&, std::set<short unsigned int>&, std::vector<long long int>&)' at /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:164:38:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)' at /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:457:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)' at /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:457:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 11%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/RollingBuffer_p.cpp
[ 11%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/SerialBgzfStream_p.cpp
[ 11%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o -MF CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o.d -o CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/FormatVariadic.cpp
[ 11%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.c
In file included from /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.c:32:
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.c: In function 'bgzf_check_EOF':
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:73:34: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
73 | #define _bgzf_read(fp, buf, len) fread(buf, 1, len, (_bgzf_file_t)fp)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.c:578:9: note: in expansion of macro '_bgzf_read'
578 | _bgzf_read(fp->fp, buf, 28);
| ^~~~~~~~~~
[ 11%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c
In file included from /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c:46:
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c: In function 'kftp_send_cmd':
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.h:9:32: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
9 | #define netwrite(fd, ptr, len) write(fd, ptr, len)
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c:236:9: note: in expansion of macro 'netwrite'
236 | netwrite(ftp->ctrl_fd, cmd, strlen(cmd));
| ^~~~~~~~
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c: In function 'khttp_connect_file':
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.h:9:32: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
9 | #define netwrite(fd, ptr, len) write(fd, ptr, len)
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c:415:9: note: in expansion of macro 'netwrite'
415 | netwrite(fp->fd, buf, l);
| ^~~~~~~~
[ 12%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/block.c
In file included from /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/block.c:5:
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined
8 | safe_mutex_unlock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined
5 | safe_mutex_lock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/block.c:4:
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined
240 | unpackInt16(const uint8_t* buffer);
| ^~~~~~~~~~~
[ 12%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/consumer.c
[ 12%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/pbgzf.c
In file included from /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/consumer.c:12:
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined
8 | safe_mutex_unlock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined
5 | safe_mutex_lock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/consumer.c:11:
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined
240 | unpackInt16(const uint8_t* buffer);
| ^~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/pbgzf.c:14:
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined
8 | safe_mutex_unlock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined
5 | safe_mutex_lock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/pbgzf.c:13:
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined
240 | unpackInt16(const uint8_t* buffer);
| ^~~~~~~~~~~
[ 12%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/queue.c
In file included from /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/queue.c:6:
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined
8 | safe_mutex_unlock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined
5 | safe_mutex_lock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~
[ 12%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/reader.c
In file included from /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/reader.c:8:
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined
8 | safe_mutex_unlock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined
5 | safe_mutex_lock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/reader.c:7:
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined
240 | unpackInt16(const uint8_t* buffer);
| ^~~~~~~~~~~
[ 13%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.c
[ 13%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/writer.c
[ 13%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Hashing.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Hashing.cpp.o -MF CMakeFiles/llvm-support.dir/Hashing.cpp.o.d -o CMakeFiles/llvm-support.dir/Hashing.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/Hashing.cpp
[ 13%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Host.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Host.cpp.o -MF CMakeFiles/llvm-support.dir/Host.cpp.o.d -o CMakeFiles/llvm-support.dir/Host.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/Host.cpp
[ 13%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/JSON.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/JSON.cpp.o -MF CMakeFiles/llvm-support.dir/JSON.cpp.o.d -o CMakeFiles/llvm-support.dir/JSON.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/JSON.cpp
In file included from /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/pbgzf.h:11,
from /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/writer.c:10:
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined
8 | safe_mutex_unlock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined
5 | safe_mutex_lock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/writer.c:7:
/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined
240 | unpackInt16(const uint8_t* buffer);
| ^~~~~~~~~~~
[ 13%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/sam/SamFormatParser_p.cpp
[ 14%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/LEB128.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/LEB128.cpp.o -MF CMakeFiles/llvm-support.dir/LEB128.cpp.o.d -o CMakeFiles/llvm-support.dir/LEB128.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/LEB128.cpp
[ 14%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/LineIterator.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/LineIterator.cpp.o -MF CMakeFiles/llvm-support.dir/LineIterator.cpp.o.d -o CMakeFiles/llvm-support.dir/LineIterator.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/LineIterator.cpp
[ 14%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/sam/SamFormatPrinter_p.cpp
[ 14%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/sam/SamHeaderValidator_p.cpp
[ 14%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Locale.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Locale.cpp.o -MF CMakeFiles/llvm-support.dir/Locale.cpp.o.d -o CMakeFiles/llvm-support.dir/Locale.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/Locale.cpp
[ 14%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/MD5.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/MD5.cpp.o -MF CMakeFiles/llvm-support.dir/MD5.cpp.o.d -o CMakeFiles/llvm-support.dir/MD5.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/MD5.cpp
[ 15%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools -I/<<PKGBUILDDIR>>/assembler/ext/src/bamtools/src -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/bamtools/api/internal/utils/BamException_p.cpp
[ 15%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o -MF CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o.d -o CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/ManagedStatic.cpp
[ 15%] Linking CXX static library libBamTools.a
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cmake -P CMakeFiles/BamTools.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1
/usr/bin/ar qc libBamTools.a CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o
[ 17%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/MemAlloc.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/MemAlloc.cpp.o -MF CMakeFiles/llvm-support.dir/MemAlloc.cpp.o.d -o CMakeFiles/llvm-support.dir/MemAlloc.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/MemAlloc.cpp
[ 17%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/MemoryBuffer.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/MemoryBuffer.cpp.o -MF CMakeFiles/llvm-support.dir/MemoryBuffer.cpp.o.d -o CMakeFiles/llvm-support.dir/MemoryBuffer.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/MemoryBuffer.cpp
/usr/bin/ranlib libBamTools.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 17%] Built target BamTools
[ 17%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/NativeFormatting.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/NativeFormatting.cpp.o -MF CMakeFiles/llvm-support.dir/NativeFormatting.cpp.o.d -o CMakeFiles/llvm-support.dir/NativeFormatting.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/NativeFormatting.cpp
[ 17%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Path.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Path.cpp.o -MF CMakeFiles/llvm-support.dir/Path.cpp.o.d -o CMakeFiles/llvm-support.dir/Path.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/Path.cpp
[ 17%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Process.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Process.cpp.o -MF CMakeFiles/llvm-support.dir/Process.cpp.o.d -o CMakeFiles/llvm-support.dir/Process.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/Process.cpp
[ 18%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Program.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Program.cpp.o -MF CMakeFiles/llvm-support.dir/Program.cpp.o.d -o CMakeFiles/llvm-support.dir/Program.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/Program.cpp
In file included from /<<PKGBUILDDIR>>/assembler/ext/src/llvm/Process.cpp:100:
/<<PKGBUILDDIR>>/assembler/ext/src/llvm/Process.inc: In static member function 'static size_t llvm::sys::Process::GetMallocUsage()':
/<<PKGBUILDDIR>>/assembler/ext/src/llvm/Process.inc:94:18: warning: 'mallinfo mallinfo()' is deprecated [-Wdeprecated-declarations]
94 | mi = ::mallinfo();
| ~~~~~~~~~~^~
In file included from /<<PKGBUILDDIR>>/assembler/ext/src/llvm/Process.inc:35:
/usr/include/malloc.h:114:24: note: declared here
114 | extern struct mallinfo mallinfo (void) __THROW __MALLOC_DEPRECATED;
| ^~~~~~~~
[ 18%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Regex.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Regex.cpp.o -MF CMakeFiles/llvm-support.dir/Regex.cpp.o.d -o CMakeFiles/llvm-support.dir/Regex.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/Regex.cpp
[ 18%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Signals.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Signals.cpp.o -MF CMakeFiles/llvm-support.dir/Signals.cpp.o.d -o CMakeFiles/llvm-support.dir/Signals.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/Signals.cpp
[ 18%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/SmallVector.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/SmallVector.cpp.o -MF CMakeFiles/llvm-support.dir/SmallVector.cpp.o.d -o CMakeFiles/llvm-support.dir/SmallVector.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/SmallVector.cpp
[ 18%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/SourceMgr.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/SourceMgr.cpp.o -MF CMakeFiles/llvm-support.dir/SourceMgr.cpp.o.d -o CMakeFiles/llvm-support.dir/SourceMgr.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/SourceMgr.cpp
[ 19%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/StringExtras.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/StringExtras.cpp.o -MF CMakeFiles/llvm-support.dir/StringExtras.cpp.o.d -o CMakeFiles/llvm-support.dir/StringExtras.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/StringExtras.cpp
[ 19%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/StringMap.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/StringMap.cpp.o -MF CMakeFiles/llvm-support.dir/StringMap.cpp.o.d -o CMakeFiles/llvm-support.dir/StringMap.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/StringMap.cpp
[ 19%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/StringRef.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/StringRef.cpp.o -MF CMakeFiles/llvm-support.dir/StringRef.cpp.o.d -o CMakeFiles/llvm-support.dir/StringRef.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/StringRef.cpp
[ 19%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/StringSaver.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/StringSaver.cpp.o -MF CMakeFiles/llvm-support.dir/StringSaver.cpp.o.d -o CMakeFiles/llvm-support.dir/StringSaver.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/StringSaver.cpp
[ 19%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o -MF CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o.d -o CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/ThreadLocal.cpp
[ 20%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Threading.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Threading.cpp.o -MF CMakeFiles/llvm-support.dir/Threading.cpp.o.d -o CMakeFiles/llvm-support.dir/Threading.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/Threading.cpp
[ 20%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o -MF CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o.d -o CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/TimeProfiler.cpp
[ 20%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Twine.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Twine.cpp.o -MF CMakeFiles/llvm-support.dir/Twine.cpp.o.d -o CMakeFiles/llvm-support.dir/Twine.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/Twine.cpp
[ 20%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Unicode.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Unicode.cpp.o -MF CMakeFiles/llvm-support.dir/Unicode.cpp.o.d -o CMakeFiles/llvm-support.dir/Unicode.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/Unicode.cpp
[ 20%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/WithColor.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/WithColor.cpp.o -MF CMakeFiles/llvm-support.dir/WithColor.cpp.o.d -o CMakeFiles/llvm-support.dir/WithColor.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/WithColor.cpp
[ 21%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/YAMLParser.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/YAMLParser.cpp.o -MF CMakeFiles/llvm-support.dir/YAMLParser.cpp.o.d -o CMakeFiles/llvm-support.dir/YAMLParser.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/YAMLParser.cpp
[ 21%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o -MF CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o.d -o CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/YAMLTraits.cpp
In file included from /usr/include/c++/12/algorithm:61,
from /<<PKGBUILDDIR>>/assembler/ext/include/llvm/ADT/iterator.h:13,
from /<<PKGBUILDDIR>>/assembler/ext/include/llvm/ADT/STLExtras.h:20,
from /<<PKGBUILDDIR>>/assembler/ext/include/llvm/Support/Error.h:16,
from /<<PKGBUILDDIR>>/assembler/ext/include/llvm/Support/TimeProfiler.h:12,
from /<<PKGBUILDDIR>>/assembler/ext/src/llvm/TimeProfiler.cpp:13:
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)> >]':
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)> >]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/12/bits/stl_algo.h:60:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Distance = int; _Tp = pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)> >]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
[ 21%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o -MF CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o.d -o CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/raw_os_ostream.cpp
In file included from /usr/include/c++/12/vector:70,
from /<<PKGBUILDDIR>>/assembler/ext/include/llvm/ADT/ArrayRef.h:25,
from /<<PKGBUILDDIR>>/assembler/ext/include/llvm/ADT/StringExtras.h:16,
from /<<PKGBUILDDIR>>/assembler/ext/include/llvm/Support/Error.h:18:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, const std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > >&}; _Tp = std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > >]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > >::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)> >]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, const std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > >&}; _Tp = std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > >]',
inlined from 'void llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)' at /<<PKGBUILDDIR>>/assembler/ext/src/llvm/TimeProfiler.cpp:188:32:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)> >]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Compare = llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from 'void llvm::sort(IteratorTy, IteratorTy, Compare) [with IteratorTy = __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >; Compare = TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)>]' at /<<PKGBUILDDIR>>/assembler/ext/include/llvm/ADT/STLExtras.h:1440:12,
inlined from 'void llvm::sort(Container&&, Compare) [with Container = std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > >&; Compare = TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)>]' at /<<PKGBUILDDIR>>/assembler/ext/include/llvm/ADT/STLExtras.h:1445:13,
inlined from 'void llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)' at /<<PKGBUILDDIR>>/assembler/ext/src/llvm/TimeProfiler.cpp:190:15:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)> >]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)> >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Compare = llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from 'void llvm::sort(IteratorTy, IteratorTy, Compare) [with IteratorTy = __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >; Compare = TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)>]' at /<<PKGBUILDDIR>>/assembler/ext/include/llvm/ADT/STLExtras.h:1440:12,
inlined from 'void llvm::sort(Container&&, Compare) [with Container = std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > >&; Compare = TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)>]' at /<<PKGBUILDDIR>>/assembler/ext/include/llvm/ADT/STLExtras.h:1445:13,
inlined from 'void llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)' at /<<PKGBUILDDIR>>/assembler/ext/src/llvm/TimeProfiler.cpp:190:15:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 21%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/raw_ostream.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/raw_ostream.cpp.o -MF CMakeFiles/llvm-support.dir/raw_ostream.cpp.o.d -o CMakeFiles/llvm-support.dir/raw_ostream.cpp.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/raw_ostream.cpp
[ 21%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regcomp.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regcomp.c.o -MF CMakeFiles/llvm-support.dir/regcomp.c.o.d -o CMakeFiles/llvm-support.dir/regcomp.c.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/regcomp.c
[ 22%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regerror.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regerror.c.o -MF CMakeFiles/llvm-support.dir/regerror.c.o.d -o CMakeFiles/llvm-support.dir/regerror.c.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/regerror.c
[ 22%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regexec.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regexec.c.o -MF CMakeFiles/llvm-support.dir/regexec.c.o.d -o CMakeFiles/llvm-support.dir/regexec.c.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/regexec.c
[ 22%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regfree.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regfree.c.o -MF CMakeFiles/llvm-support.dir/regfree.c.o.d -o CMakeFiles/llvm-support.dir/regfree.c.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/regfree.c
[ 22%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regstrlcpy.c.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<PKGBUILDDIR>>/assembler/src/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/<<PKGBUILDDIR>>/assembler/src -I/<<PKGBUILDDIR>>/assembler/src/common -I/<<PKGBUILDDIR>>/assembler/ext/src/llvm -isystem /<<PKGBUILDDIR>>/assembler/src/../ext/include -isystem /<<PKGBUILDDIR>>/assembler/ext/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regstrlcpy.c.o -MF CMakeFiles/llvm-support.dir/regstrlcpy.c.o.d -o CMakeFiles/llvm-support.dir/regstrlcpy.c.o -c /<<PKGBUILDDIR>>/assembler/ext/src/llvm/regstrlcpy.c
[ 22%] Linking CXX static library libllvm-support.a
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cmake -P CMakeFiles/llvm-support.dir/cmake_clean_target.cmake
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cmake -E cmake_link_script CMakeFiles/llvm-support.dir/link.txt --verbose=1
/usr/bin/ar qc libllvm-support.a "CMakeFiles/llvm-support.dir/APFloat.cpp.o" "CMakeFiles/llvm-support.dir/APInt.cpp.o" "CMakeFiles/llvm-support.dir/Atomic.cpp.o" "CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o" "CMakeFiles/llvm-support.dir/Debug.cpp.o" "CMakeFiles/llvm-support.dir/Errno.cpp.o" "CMakeFiles/llvm-support.dir/Error.cpp.o" "CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o" "CMakeFiles/llvm-support.dir/FoldingSet.cpp.o" "CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o" "CMakeFiles/llvm-support.dir/Hashing.cpp.o" "CMakeFiles/llvm-support.dir/Host.cpp.o" "CMakeFiles/llvm-support.dir/JSON.cpp.o" "CMakeFiles/llvm-support.dir/LEB128.cpp.o" "CMakeFiles/llvm-support.dir/LineIterator.cpp.o" "CMakeFiles/llvm-support.dir/Locale.cpp.o" "CMakeFiles/llvm-support.dir/MD5.cpp.o" "CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o" "CMakeFiles/llvm-support.dir/MemAlloc.cpp.o" "CMakeFiles/llvm-support.dir/MemoryBuffer.cpp.o" "CMakeFiles/llvm-support.dir/NativeFormatting.cpp.o" "CMakeFiles/llvm-support.dir/Path.cpp.o" "CMakeFiles/llvm-support.dir/Process.cpp.o" "CMakeFiles/llvm-support.dir/Program.cpp.o" "CMakeFiles/llvm-support.dir/Regex.cpp.o" "CMakeFiles/llvm-support.dir/Signals.cpp.o" "CMakeFiles/llvm-support.dir/SmallVector.cpp.o" "CMakeFiles/llvm-support.dir/SourceMgr.cpp.o" "CMakeFiles/llvm-support.dir/StringExtras.cpp.o" "CMakeFiles/llvm-support.dir/StringMap.cpp.o" "CMakeFiles/llvm-support.dir/StringRef.cpp.o" "CMakeFiles/llvm-support.dir/StringSaver.cpp.o" "CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o" "CMakeFiles/llvm-support.dir/Threading.cpp.o" "CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o" "CMakeFiles/llvm-support.dir/Twine.cpp.o" "CMakeFiles/llvm-support.dir/Unicode.cpp.o" "CMakeFiles/llvm-support.dir/WithColor.cpp.o" "CMakeFiles/llvm-support.dir/YAMLParser.cpp.o" "CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o" "CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o" "CMakeFiles/llvm-support.dir/raw_ostream.cpp.o" "CMakeFiles/llvm-support.dir/regcomp.c.o" "CMakeFiles/llvm-support.dir/regerror.c.o" "CMakeFiles/llvm-support.dir/regexec.c.o" "CMakeFiles/llvm-support.dir/regfree.c.o" "CMakeFiles/llvm-support.dir/regstrlcpy.c.o"
/usr/bin/ranlib libllvm-support.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 22%] Built target llvm-support
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: *** [Makefile:169: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_auto_build: error: cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" all debruijn_test include_test VERBOSE=1 returned exit code 2
make[1]: *** [debian/rules:29: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:14: binary-arch] Error 2
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2023-05-20T03:06:31Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 164628
Build-Time: 304
Distribution: bookworm-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 1134
Job: spades_3.15.5+dfsg-2
Machine Architecture: armhf
Package: spades
Package-Time: 1497
Source-Version: 3.15.5+dfsg-2
Space: 164628
Status: attempted
Version: 3.15.5+dfsg-2
--------------------------------------------------------------------------------
Finished at 2023-05-20T03:06:31Z
Build needed 00:24:57, 164628k disk space