spades →
3.15.5+dfsg-1 →
armhf → 2022-09-13 12:49:56
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| spades 3.15.5+dfsg-1 (armhf) Tue, 13 Sep 2022 12:23:22 +0000 |
+==============================================================================+
Package: spades
Version: 3.15.5+dfsg-1
Source Version: 3.15.5+dfsg-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-ba3ef647-5cf0-4f91-9b29-68b78092b985' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.3 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.1 MB]
Fetched 27.4 MB in 30s (927 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'spades' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/spades.git
Please use:
git clone https://salsa.debian.org/med-team/spades.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 9936 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main spades 3.15.5+dfsg-1 (dsc) [2508 B]
Get:2 http://172.17.4.1/private bookworm-staging/main spades 3.15.5+dfsg-1 (tar) [9903 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main spades 3.15.5+dfsg-1 (diff) [30.0 kB]
Fetched 9936 kB in 1s (10.2 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/spades-Dqdhn2/spades-3.15.5+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/spades-Dqdhn2' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-nbti3J/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-nbti3J/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-nbti3J/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-nbti3J/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-nbti3J/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-nbti3J/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-nbti3J/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-nbti3J/apt_archive ./ Packages [430 B]
Fetched 2106 B in 1s (2604 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-nbti3J/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (20.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12858 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, cmake, python3-all, zlib1g-dev, libbz2-dev, libbam-dev, libbamtools-dev, libhts-dev, libnlopt-dev, libnlopt-cxx-dev, libssw-dev, llvm-dev, python3-yaml, python3-joblib, asciidoctor, bwa, libbwa-dev, lynx
Filtered Build-Depends: debhelper-compat (= 13), dh-python, cmake, python3-all, zlib1g-dev, libbz2-dev, libbam-dev, libbamtools-dev, libhts-dev, libnlopt-dev, libnlopt-cxx-dev, libssw-dev, llvm-dev, python3-yaml, python3-joblib, asciidoctor, bwa, libbwa-dev, lynx
dpkg-deb: building package 'sbuild-build-depends-spades-dummy' in '/<<BUILDDIR>>/resolver-nbti3J/apt_archive/sbuild-build-depends-spades-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-spades-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-nbti3J/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-nbti3J/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-nbti3J/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-nbti3J/apt_archive ./ Sources [588 B]
Get:5 copy:/<<BUILDDIR>>/resolver-nbti3J/apt_archive ./ Packages [670 B]
Fetched 2591 B in 1s (3436 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install spades build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bsdextrautils bwa
ca-certificates cmake cmake-data debhelper dh-autoreconf dh-elpa-helper
dh-python dh-strip-nondeterminism dwz emacsen-common file gettext
gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl
libarchive13 libbam-dev libbamtools-dev libbamtools2.5.2 libbrotli1 libbsd0
libbwa-dev libbz2-dev libclang-cpp14 libcurl3-gnutls libcurl3-nss libcurl4
libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libedit2
libelf1 libexpat1 libffi-dev libfile-stripnondeterminism-perl libhts-dev
libhts3 libhtscodecs2 libicu-dev libicu71 libjsoncpp25 libllvm14 liblzma-dev
libmagic-mgc libmagic1 libmd0 libmpdec3 libncurses-dev libncurses6
libnghttp2-14 libnlopt-cxx-dev libnlopt-cxx0 libnlopt-dev libnlopt0 libnspr4
libnss3 libpfm4 libpipeline1 libprocps8 libpsl5 libpython3-stdlib
libpython3.10-minimal libpython3.10-stdlib librhash0 librtmp1 libruby3.0
libssh2-1 libssw-dev libssw0 libsub-override-perl libtinfo-dev libtool
libuchardet0 libuv1 libxml2 libxml2-dev libyaml-0-2 libz3-4 libz3-dev llvm
llvm-14 llvm-14-dev llvm-14-linker-tools llvm-14-runtime llvm-14-tools
llvm-dev llvm-runtime lynx lynx-common m4 man-db media-types openssl
po-debconf procps python3 python3-all python3-distutils python3-joblib
python3-lib2to3 python3-minimal python3-pkg-resources python3-pygments
python3-yaml python3.10 python3.10-minimal rake ruby ruby-asciidoctor
ruby-net-telnet ruby-rubygems ruby-webrick ruby-xmlrpc ruby3.0
rubygems-integration zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc samtools cmake-doc ninja-build
cmake-format dh-make flit python3-build python3-tomli python3-installer
gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libbamtools-doc
libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev
librtmp-dev libssh2-1-dev pkg-config icu-doc liblzma-doc ncurses-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk llvm-14-doc m4-doc
apparmor less libmail-box-perl python3-doc python3-tk python3-venv
python3-setuptools python-pygments-doc ttf-bitstream-vera python3.10-venv
python3.10-doc binfmt-support ri ruby-dev bundler
Recommended packages:
bzip2-doc libarchive-cpio-perl libgpm2 publicsuffix libltdl-dev
binfmt-support | systemd mime-support libmail-sendmail-perl psmisc
python3-numpy python3-pytest python3-simplejson python3-psutil zip
fonts-lato libjs-jquery
The following NEW packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bsdextrautils bwa
ca-certificates cmake cmake-data debhelper dh-autoreconf dh-elpa-helper
dh-python dh-strip-nondeterminism dwz emacsen-common file gettext
gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl
libarchive13 libbam-dev libbamtools-dev libbamtools2.5.2 libbrotli1 libbsd0
libbwa-dev libbz2-dev libclang-cpp14 libcurl3-gnutls libcurl3-nss libcurl4
libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libedit2
libelf1 libexpat1 libffi-dev libfile-stripnondeterminism-perl libhts-dev
libhts3 libhtscodecs2 libicu-dev libicu71 libjsoncpp25 libllvm14 liblzma-dev
libmagic-mgc libmagic1 libmd0 libmpdec3 libncurses-dev libncurses6
libnghttp2-14 libnlopt-cxx-dev libnlopt-cxx0 libnlopt-dev libnlopt0 libnspr4
libnss3 libpfm4 libpipeline1 libprocps8 libpsl5 libpython3-stdlib
libpython3.10-minimal libpython3.10-stdlib librhash0 librtmp1 libruby3.0
libssh2-1 libssw-dev libssw0 libsub-override-perl libtinfo-dev libtool
libuchardet0 libuv1 libxml2 libxml2-dev libyaml-0-2 libz3-4 libz3-dev llvm
llvm-14 llvm-14-dev llvm-14-linker-tools llvm-14-runtime llvm-14-tools
llvm-dev llvm-runtime lynx lynx-common m4 man-db media-types openssl
po-debconf procps python3 python3-all python3-distutils python3-joblib
python3-lib2to3 python3-minimal python3-pkg-resources python3-pygments
python3-yaml python3.10 python3.10-minimal rake ruby ruby-asciidoctor
ruby-net-telnet ruby-rubygems ruby-webrick ruby-xmlrpc ruby3.0
rubygems-integration sbuild-build-depends-spades-dummy zlib1g-dev
0 upgraded, 127 newly installed, 0 to remove and 38 not upgraded.
Need to get 143 MB of archives.
After this operation, 701 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-nbti3J/apt_archive ./ sbuild-build-depends-spades-dummy 0.invalid.0 [952 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.6-1 [813 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.8-1 [84.1 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.6-1 [1520 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.6-1 [38.7 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.6-1 [1596 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.6-1 [545 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.6-1 [21.7 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.6-1 [38.2 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1 [137 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-2 [34.2 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-3 [1364 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libprocps8 armhf 2:3.3.17-7 [60.7 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf procps armhf 2:3.3.17-7 [475 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.5-2 [1372 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-9 [171 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf rubygems-integration all 1.18 [6704 B]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf rake all 13.0.6-3 [83.9 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf ruby-net-telnet all 0.1.1-2.1 [12.7 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf ruby-webrick all 1.7.0-3 [50.8 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf ruby-xmlrpc all 0.3.2-2 [24.4 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.6-1 [109 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20210910-1 [81.2 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libyaml-0-2 armhf 0.2.5-1 [44.6 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libruby3.0 armhf 3.0.4-7 [5083 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf ruby3.0 armhf 3.0.4-7 [682 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf ruby-rubygems all 3.3.15-1 [293 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf ruby armhf 1:3.0+1 [12.1 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf ruby-asciidoctor all 2.0.16-2 [210 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf asciidoctor all 2.0.16-2 [87.6 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-9 [510 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf bwa armhf 0.7.17-7 [196 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libarchive13 armhf 3.6.0-1 [306 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.49.0-1 [69.8 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.85.0-1 [325 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libjsoncpp25 armhf 1.9.5-4 [66.7 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf librhash0 armhf 1.4.3-3 [142 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libuv1 armhf 1.44.1-2+rpi1 [124 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf dh-elpa-helper all 2.0.11 [11.4 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf emacsen-common all 3.0.4 [19.3 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf cmake-data all 3.24.1-1 [2018 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf cmake armhf 3.24.1-1 [3654 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.9.1 [196 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-3 [10.4 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-9 [1220 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.9.1 [1071 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.10.6-1 [79.9 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.10.6-1 [141 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220819+rpi1 [114 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 71.1-3 [177 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libbam-dev armhf 0.1.19+dfsg-5 [106 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libbamtools2.5.2 armhf 2.5.2+dfsg-2 [127 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libbamtools-dev armhf 2.5.2+dfsg-2 [183 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libbwa-dev armhf 0.7.17-7 [150 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libz3-4 armhf 4.8.12-1 [5758 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libllvm14 armhf 1:14.0.6-2+rpi1 [19.5 MB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libclang-cpp14 armhf 1:14.0.6-2+rpi1 [9481 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.85.0-1 [320 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libnspr4 armhf 2:4.34.1-1 [90.9 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libnss3 armhf 2:3.82-1 [1101 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-nss armhf 7.85.0-1 [327 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libcurl4-gnutls-dev armhf 7.85.0-1 [397 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.12-1 [60.5 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libdeflate-dev armhf 1.12-1 [51.8 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libffi-dev armhf 3.4.2-4 [61.7 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.2.2-1 [53.1 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libhts3 armhf 1.13+ds-2+b1 [339 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2.1 [218 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libhts-dev armhf 1.13+ds-2+b1 [4045 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 71.1-3 [9799 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3+20220423-2 [289 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libnlopt0 armhf 2.7.1-4+b1 [141 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libnlopt-dev armhf 2.7.1-4+b1 [48.1 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libnlopt-cxx0 armhf 2.7.1-4+b1 [158 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libnlopt-cxx-dev armhf 2.7.1-4+b1 [14.9 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libpfm4 armhf 4.11.1+git74-g5140ce5-1 [48.8 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libssw0 armhf 1.1-13 [21.0 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libssw-dev armhf 1.1-13 [24.0 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libtinfo-dev armhf 6.3+20220423-2 [932 B]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libxml2-dev armhf 2.9.14+dfsg-1 [656 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libz3-dev armhf 4.8.12-1 [91.9 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf llvm-14-runtime armhf 1:14.0.6-2+rpi1 [457 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf llvm-runtime armhf 1:14.0-55.1 [9324 B]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf llvm-14-linker-tools armhf 1:14.0.6-2+rpi1 [1071 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf llvm-14 armhf 1:14.0.6-2+rpi1 [10.0 MB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf llvm armhf 1:14.0-55.1 [11.7 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf python3-pygments all 2.12.0+dfsg-2 [765 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf python3-yaml armhf 5.4.1-1+b1 [151 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf llvm-14-tools armhf 1:14.0.6-2+rpi1 [392 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf llvm-14-dev armhf 1:14.0.6-2+rpi1 [33.9 MB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf llvm-dev armhf 1:14.0-55.1 [9596 B]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf lynx-common all 2.9.0dev.10-1 [1186 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf lynx armhf 2.9.0dev.10-1 [506 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf python3-all armhf 3.10.6-1 [1060 B]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf python3-joblib all 1.1.0-2 [218 kB]
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Setting up libhtscodecs2:armhf (1.2.2-1) ...
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Setting up libicu71:armhf (71.1-3) ...
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Setting up libuv1:armhf (1.44.1-2+rpi1) ...
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Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
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Setting up libssw0:armhf (1.1-13) ...
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Setting up libprocps8:armhf (2:3.3.17-7) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libpython3.10-stdlib:armhf (3.10.6-1) ...
Setting up dh-autoreconf (20) ...
Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
Setting up libnlopt-cxx-dev:armhf (2.7.1-4+b1) ...
Setting up libxml2-dev:armhf (2.9.14+dfsg-1) ...
Setting up libbamtools-dev:armhf (2.5.2+dfsg-2) ...
Setting up libbam-dev (0.1.19+dfsg-5) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up libllvm14:armhf (1:14.0.6-2+rpi1) ...
Setting up dwz (0.14-1) ...
Setting up libcurl3-nss:armhf (7.85.0-1) ...
Setting up groff-base (1.22.4-8) ...
Setting up procps (2:3.3.17-7) ...
Setting up libcurl4:armhf (7.85.0-1) ...
Setting up lynx (2.9.0dev.10-1) ...
update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode
Setting up llvm-14-linker-tools (1:14.0.6-2+rpi1) ...
Setting up libpython3-stdlib:armhf (3.10.6-1) ...
Setting up libtinfo-dev:armhf (6.3+20220423-2) ...
Setting up libhts3:armhf (1.13+ds-2+b1) ...
Setting up python3.10 (3.10.6-1) ...
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Setting up python3 (3.10.6-1) ...
Setting up rubygems-integration (1.18) ...
Setting up man-db (2.10.2-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up llvm-14-runtime (1:14.0.6-2+rpi1) ...
Setting up llvm-runtime:armhf (1:14.0-55.1) ...
Setting up libclang-cpp14 (1:14.0.6-2+rpi1) ...
Setting up cmake (3.24.1-1) ...
Setting up python3-lib2to3 (3.10.6-1) ...
Setting up llvm-14 (1:14.0.6-2+rpi1) ...
Setting up python3-pkg-resources (59.6.0-1.2) ...
Setting up python3-distutils (3.10.6-1) ...
Setting up dh-python (5.20220819+rpi1) ...
Setting up python3-joblib (1.1.0-2) ...
Setting up python3-all (3.10.6-1) ...
Setting up python3-yaml (5.4.1-1+b1) ...
Setting up debhelper (13.9.1) ...
Setting up python3-pygments (2.12.0+dfsg-2) ...
Setting up llvm (1:14.0-55.1) ...
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Setting up llvm-14-dev (1:14.0.6-2+rpi1) ...
Setting up llvm-dev (1:14.0-55.1) ...
Setting up rake (13.0.6-3) ...
Setting up libruby3.0:armhf (3.0.4-7) ...
Setting up ruby-rubygems (3.3.15-1) ...
Setting up ruby3.0 (3.0.4-7) ...
Setting up ruby (1:3.0+1) ...
Setting up ruby-asciidoctor (2.0.16-2) ...
Setting up asciidoctor (2.0.16-2) ...
Setting up sbuild-build-depends-spades-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.33-8+rpi1) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.38.90.20220713-2+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.1.0-7+rpi1 gcc-12_12.1.0-7+rpi1 libc6-dev_2.33-8+rpi1 libstdc++-12-dev_12.1.0-7+rpi1 libstdc++6_12.1.0-7+rpi1 linux-libc-dev_5.18.14-1+rpi1
Package versions: adduser_3.123 apt_2.5.2 asciidoctor_2.0.16-2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.6.0 bash_5.1-6.1 binutils_2.38.90.20220713-2+rpi1 binutils-arm-linux-gnueabihf_2.38.90.20220713-2+rpi1 binutils-common_2.38.90.20220713-2+rpi1 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bwa_0.7.17-7 bzip2_1.0.8-5+b2 ca-certificates_20211016 cmake_3.24.1-1 cmake-data_3.24.1-1 coreutils_8.32-4.1 cpp_4:12.1.0-3+rpi1 cpp-12_12.1.0-7+rpi1 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.9.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-elpa-helper_2.0.11 dh-python_5.20220819+rpi1 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.35-3 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 emacsen-common_3.0.4 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.1.0-3+rpi1 g++-12_12.1.0-7+rpi1 gcc_4:12.1.0-3+rpi1 gcc-10-base_10.4.0-4+rpi1 gcc-12_12.1.0-7+rpi1 gcc-12-base_12.1.0-7+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-9 gettext-base_0.21-9 gnupg_2.2.35-3 gnupg-l10n_2.2.35-3 gnupg-utils_2.2.35-3 gpg_2.2.35-3 gpg-agent_2.2.35-3 gpg-wks-client_2.2.35-3 gpg-wks-server_2.2.35-3 gpgconf_2.2.35-3 gpgsm_2.2.35-3 gpgv_2.2.35-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 icu-devtools_71.1-3 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libarchive13_3.6.0-1 libasan8_12.1.0-7+rpi1 libassuan0_2.5.5-4 libatomic1_12.1.0-7+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbam-dev_0.1.19+dfsg-5 libbamtools-dev_2.5.2+dfsg-2 libbamtools2.5.2_2.5.2+dfsg-2 libbinutils_2.38.90.20220713-2+rpi1 libblkid1_2.38.1-1 libbrotli1_1.0.9-2+b2 libbsd0_0.11.6-1 libbwa-dev_0.7.17-7 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.33-8+rpi1 libc-dev-bin_2.33-8+rpi1 libc6_2.33-8+rpi1 libc6-dev_2.33-8+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.1.0-7+rpi1 libclang-cpp14_1:14.0.6-2+rpi1 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.38.90.20220713-2+rpi1 libctf0_2.38.90.20220713-2+rpi1 libcurl3-gnutls_7.85.0-1 libcurl3-nss_7.85.0-1 libcurl4_7.85.0-1 libcurl4-gnutls-dev_7.85.0-1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.263 libdebhelper-perl_13.9.1 libdeflate-dev_1.12-1 libdeflate0_1.12-1 libdpkg-perl_1.21.9+rpi1 libedit2_3.1-20210910-1 libelf1_0.187-2+rpi2 libexpat1_2.4.8-1 libext2fs2_1.46.5-2 libfakeroot_1.29-1 libffi-dev_3.4.2-4 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-12-dev_12.1.0-7+rpi1 libgcc-s1_12.1.0-7+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.1.0-7+rpi1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libhts-dev_1.13+ds-2+b1 libhts3_1.13+ds-2+b1 libhtscodecs2_1.2.2-1 libicu-dev_71.1-3 libicu71_71.1-3 libidn2-0_2.3.3-1 libisl23_0.25-1 libjsoncpp25_1.9.5-4 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 libldap-2.4-2_2.4.59+dfsg-1 libldap-2.5-0_2.5.12+dfsg-2 libldap-common_2.5.12+dfsg-2 libllvm14_1:14.0.6-2+rpi1 liblocale-gettext-perl_1.07-4+b2 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2.1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmount1_2.38.1-1 libmpc3_1.2.1-2 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncurses-dev_6.3+20220423-2 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.49.0-1 libnlopt-cxx-dev_2.7.1-4+b1 libnlopt-cxx0_2.7.1-4+b1 libnlopt-dev_2.7.1-4+b1 libnlopt0_2.7.1-4+b1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnspr4_2:4.34.1-1 libnss3_2:3.82-1 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-2 libpam-modules-bin_1.5.2-2 libpam-runtime_1.5.2-2 libpam0g_1.5.2-2 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libpfm4_4.11.1+git74-g5140ce5-1 libpipeline1_1.5.6-2 libprocps8_2:3.3.17-7 libpsl5_0.21.0-1.2 libpython3-stdlib_3.10.6-1 libpython3.10-minimal_3.10.6-1 libpython3.10-stdlib_3.10.6-1 libreadline8_8.1.2-1.2 librhash0_1.4.3-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libruby3.0_3.0.4-7 libsasl2-2_2.1.28+dfsg-7 libsasl2-modules-db_2.1.28+dfsg-7 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol2_3.4-2 libsmartcols1_2.38.1-1 libsqlite3-0_3.39.2-1 libss2_1.46.5-2 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.5-2 libssw-dev_1.1-13 libssw0_1.1-13 libstdc++-12-dev_12.1.0-7+rpi1 libstdc++6_12.1.0-7+rpi1 libsub-override-perl_0.09-3 libsystemd0_251.3-1+rpi1 libtasn1-6_4.18.0-4 libtext-charwidth-perl_0.04-10+b2 libtext-iconv-perl_1.7-7+b2 libtinfo-dev_6.3+20220423-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libubsan1_12.1.0-7+rpi1 libuchardet0_0.0.7-1 libudev1_251.3-1+rpi1 libunistring2_1.0-1 libuuid1_2.38.1-1 libuv1_1.44.1-2+rpi1 libxml2_2.9.14+dfsg-1 libxml2-dev_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libyaml-0-2_0.2.5-1 libz3-4_4.8.12-1 libz3-dev_4.8.12-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.18.14-1+rpi1 llvm_1:14.0-55.1 llvm-14_1:14.0.6-2+rpi1 llvm-14-dev_1:14.0.6-2+rpi1 llvm-14-linker-tools_1:14.0.6-2+rpi1 llvm-14-runtime_1:14.0.6-2+rpi1 llvm-14-tools_1:14.0.6-2+rpi1 llvm-dev_1:14.0-55.1 llvm-runtime_1:14.0-55.1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.2+rpi1 lynx_2.9.0dev.10-1 lynx-common_2.9.0dev.10-1 m4_1.4.19-1 make_4.3-4.1 man-db_2.10.2-3 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 openssl_3.0.5-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 procps_2:3.3.17-7 python3_3.10.6-1 python3-all_3.10.6-1 python3-distutils_3.10.6-1 python3-joblib_1.1.0-2 python3-lib2to3_3.10.6-1 python3-minimal_3.10.6-1 python3-pkg-resources_59.6.0-1.2 python3-pygments_2.12.0+dfsg-2 python3-yaml_5.4.1-1+b1 python3.10_3.10.6-1 python3.10-minimal_3.10.6-1 rake_13.0.6-3 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-4 ruby_1:3.0+1 ruby-asciidoctor_2.0.16-2 ruby-net-telnet_0.1.1-2.1 ruby-rubygems_3.3.15-1 ruby-webrick_1.7.0-3 ruby-xmlrpc_0.3.2-2 ruby3.0_3.0.4-7 rubygems-integration_1.18 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-spades-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sysvinit-utils_3.04-1 tar_1.34+dfsg-1 tzdata_2022c-1 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.0mDV0dCM/trustedkeys.kbx': General error
gpgv: Signature made Tue Aug 2 18:31:35 2022 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./spades_3.15.5+dfsg-1.dsc
dpkg-source: info: extracting spades in /<<BUILDDIR>>/spades-3.15.5+dfsg
dpkg-source: info: unpacking spades_3.15.5+dfsg.orig.tar.xz
dpkg-source: info: unpacking spades_3.15.5+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 0002_use_debian_packaged_python-joblib.patch
dpkg-source: info: applying 0003_accept-system-bwa.patch
dpkg-source: info: applying 0101_cmake_ignore_removed_python-yaml.patch
dpkg-source: info: applying 0102_cmake_ignore_removed_python-joblib.patch
dpkg-source: info: applying 0103_use-debian-packaged-bwa.patch
dpkg-source: info: applying 0114_use_debian_provided_libs.patch
dpkg-source: info: applying 0118_adjust_spades_home_again.patch
dpkg-source: info: applying fix-bool-cast
dpkg-source: info: applying python3.patch
dpkg-source: info: applying yaml_load.patch
dpkg-source: info: applying debuginfo.patch
dpkg-source: info: applying debian_bwa_zlib.patch
dpkg-source: info: applying workdir_for_test.patch
dpkg-source: info: applying disable_local_convertutf.patch
dpkg-source: info: applying fix-sigill-on-non-popcnt-cpus.patch
dpkg-source: info: applying fix-privacy-breaches.patch
dpkg-source: info: applying typos.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-ba3ef647-5cf0-4f91-9b29-68b78092b985
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package spades
dpkg-buildpackage: info: source version 3.15.5+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --sourcedirectory=assembler/src --buildsystem=cmake
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/spades-3.15.5+dfsg'
dh_auto_clean
find . -name "*.pyc" -delete
rm -rf /<<BUILDDIR>>/spades-3.15.5+dfsg/debian/man_src/*.html /<<BUILDDIR>>/spades-3.15.5+dfsg/debian/man_src/*.?
rm -rf /<<BUILDDIR>>/spades-3.15.5+dfsg/debian/man
make[1]: Leaving directory '/<<BUILDDIR>>/spades-3.15.5+dfsg'
dh_autoreconf_clean -O--sourcedirectory=assembler/src -O--buildsystem=cmake
debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/spades-3.15.5+dfsg'
dh_clean -X.orig
make[1]: Leaving directory '/<<BUILDDIR>>/spades-3.15.5+dfsg'
debian/rules binary-arch
dh binary-arch --with python3 --sourcedirectory=assembler/src --buildsystem=cmake
dh_update_autotools_config -a -O--sourcedirectory=assembler/src -O--buildsystem=cmake
dh_autoreconf -a -O--sourcedirectory=assembler/src -O--buildsystem=cmake
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/spades-3.15.5+dfsg'
dh_auto_configure -- -DBoost_NO_BOOST_CMAKE=TRUE
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DBoost_NO_BOOST_CMAKE=TRUE ../assembler/src
CMake Warning (dev) in CMakeLists.txt:
No project() command is present. The top-level CMakeLists.txt file must
contain a literal, direct call to the project() command. Add a line of
code such as
project(ProjectName)
near the top of the file, but after cmake_minimum_required().
CMake is pretending there is a "project(Project)" command on the first
line.
This warning is for project developers. Use -Wno-dev to suppress it.
-- The C compiler identification is GNU 12.1.0
-- The CXX compiler identification is GNU 12.1.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Found BZip2: /usr/lib/arm-linux-gnueabihf/libbz2.so (found version "1.0.8")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Looking for wsyncup in /usr/lib/arm-linux-gnueabihf/libncurses.so
-- Looking for wsyncup in /usr/lib/arm-linux-gnueabihf/libncurses.so - found
-- Looking for wsyncup in /usr/lib/arm-linux-gnueabihf/libcurses.so
-- Looking for wsyncup in /usr/lib/arm-linux-gnueabihf/libcurses.so - found
-- Found Boost: /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include (found version "1.63.0")
Making Release Configuration...
Building SPAdes from N/A, sha: N/A
-- Override standard malloc (MI_OVERRIDE=ON)
-- Enable abort() calls on memory allocation failure (MI_XMALLOC=ON)
-- Enable printing of error and warning messages by default (MI_SHOW_ERRORS=ON)
-- Use the C++ compiler to compile (MI_USE_CXX=ON)
--
-- Library base name: mimalloc-none
-- Build type : none
-- Compiler : /usr/bin/c++
-- Install directory: /usr/lib/mimalloc-1.6
-- Build targets : object
--
-- Looking for open
-- Looking for open - found
-- Looking for execinfo.h
-- Looking for execinfo.h - found
-- Looking for signal.h
-- Looking for signal.h - found
-- Looking for sys/stat.h
-- Looking for sys/stat.h - found
-- Looking for cxxabi.h
-- Looking for cxxabi.h - not found
-- Looking for dlfcn.h
-- Looking for dlfcn.h - found
-- Looking for mach/mach.h
-- Looking for mach/mach.h - not found
-- Looking for link.h
-- Looking for link.h - found
-- Looking for unistd.h
-- Looking for unistd.h - found
-- Looking for sys/mman.h
-- Looking for sys/mman.h - found
-- Looking for fcntl.h
-- Looking for fcntl.h - found
-- Looking for malloc/malloc.h
-- Looking for malloc/malloc.h - not found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for sys/time.h
-- Looking for sys/time.h - found
-- Looking for sys/resource.h
-- Looking for sys/resource.h - found
-- Looking for backtrace
-- Looking for backtrace - found
-- backtrace facility detected in default set of libraries
-- Found Backtrace: /usr/include
-- Looking for futimens
-- Looking for futimens - found
-- Looking for futimes
-- Looking for futimes - found
-- Looking for getrusage
-- Looking for getrusage - found
-- Looking for getpagesize
-- Looking for getpagesize - found
-- Looking for sysconf
-- Looking for sysconf - found
-- Looking for mallinfo
-- Looking for mallinfo - found
-- Looking for mallctl
-- Looking for mallctl - not found
-- Looking for malloc_zone_statistics
-- Looking for malloc_zone_statistics - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Looking for pthread_getspecific in pthread
-- Looking for pthread_getspecific in pthread - found
-- Looking for pthread_rwlock_init in pthread
-- Looking for pthread_rwlock_init in pthread - found
-- Looking for pthread_mutex_lock in pthread
-- Looking for pthread_mutex_lock in pthread - found
-- Looking for dlopen in dl
-- Looking for dlopen in dl - found
-- Looking for clock_gettime in rt
-- Looking for clock_gettime in rt - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Performing Test HAVE_FFI_CALL
-- Performing Test HAVE_FFI_CALL - Success
-- Found FFI: /usr/lib/arm-linux-gnueabihf/libffi.so
-- Performing Test Terminfo_LINKABLE
-- Performing Test Terminfo_LINKABLE - Success
-- Found Terminfo: /usr/lib/arm-linux-gnueabihf/libtinfo.so
-- Found LibXml2: /usr/lib/arm-linux-gnueabihf/libxml2.so (found version "2.9.14")
-- Looking for include file endian.h
-- Looking for include file endian.h - found
-- Looking for include file inttypes.h
-- Looking for include file inttypes.h - found
-- Looking for include file stdint.h
-- Looking for include file stdint.h - found
-- Looking for include file strings.h
-- Looking for include file strings.h - found
-- Looking for include file sys/types.h
-- Looking for include file sys/types.h - found
-- Looking for include file sys/param.h
-- Looking for include file sys/param.h - found
-- Looking for include file sys/sysctl.h
-- Looking for include file sys/sysctl.h - not found
-- Looking for include file emmintrin.h
-- Looking for include file emmintrin.h - not found
-- Looking for include file pmmintrin.h
-- Looking for include file pmmintrin.h - not found
-- Looking for include file xmmintrin.h
-- Looking for include file xmmintrin.h - not found
-- Looking for chmod
-- Looking for chmod - found
-- Looking for fseeko
-- Looking for fseeko - found
-- Looking for fstat
-- Looking for fstat - found
-- Looking for getcwd
-- Looking for getcwd - found
-- Looking for getpid
-- Looking for getpid - found
-- Looking for mkstemp
-- Looking for mkstemp - found
-- Looking for popen
-- Looking for popen - found
-- Looking for putenv
-- Looking for putenv - found
-- Looking for stat
-- Looking for stat - found
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for sysctl
-- Looking for sysctl - not found
-- Looking for times
-- Looking for times - found
-- Looking for erfc
-- Looking for erfc - not found
CMake Deprecation Warning at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/googletest/CMakeLists.txt:4 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
CMake Deprecation Warning at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/googletest/googletest/CMakeLists.txt:56 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- Found PythonInterp: /usr/bin/python3.10 (found version "3.10.6")
CMake Deprecation Warning at projects/mts/CMakeLists.txt:8 (cmake_minimum_required):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<BUILDDIR>>/spades-3.15.5+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/spades-3.15.5+dfsg'
dh_auto_build -- all debruijn_test include_test
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" all debruijn_test include_test VERBOSE=1
make[2]: Entering directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -B/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
make -f ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/build.make ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/depend
make -f ext/bamtools/api/CMakeFiles/BamTools.dir/build.make ext/bamtools/api/CMakeFiles/BamTools.dir/depend
make -f ext/cppformat/CMakeFiles/format.dir/build.make ext/cppformat/CMakeFiles/format.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/ConsensusCore /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/DependInfo.cmake --color=
make -f ext/getopt_pp/CMakeFiles/getopt_pp.dir/build.make ext/getopt_pp/CMakeFiles/getopt_pp.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/cppformat /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/cppformat /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/cppformat/CMakeFiles/format.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/getopt_pp /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/getopt_pp /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/getopt_pp/CMakeFiles/getopt_pp.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
make[4]: Leaving directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
make -f ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/build.make ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/build
make[4]: Leaving directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
make -f ext/cppformat/CMakeFiles/format.dir/build.make ext/cppformat/CMakeFiles/format.dir/build
make -f ext/getopt_pp/CMakeFiles/getopt_pp.dir/build.make ext/getopt_pp/CMakeFiles/getopt_pp.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
make[4]: Entering directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
make[4]: Entering directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
make[4]: Leaving directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
make -f ext/bamtools/api/CMakeFiles/BamTools.dir/build.make ext/bamtools/api/CMakeFiles/BamTools.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
[ 1%] Building CXX object ext/cppformat/CMakeFiles/format.dir/format.cc.o
[ 1%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/AffineAlignment.cpp.o
[ 1%] Building CXX object ext/getopt_pp/CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/getopt_pp && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/getopt_pp/CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o -MF CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o.d -o CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/getopt_pp/getopt_pp.cpp
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include/ConsensusCore -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/AffineAlignment.cpp.o -MF CMakeFiles/ConsensusCore.dir/AffineAlignment.cpp.o.d -o CMakeFiles/ConsensusCore.dir/AffineAlignment.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore/AffineAlignment.cpp
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/cppformat && /usr/bin/c++ -DFMT_USE_FILE_DESCRIPTORS=1 -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/cppformat -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -Wextra -pedantic -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/cppformat/CMakeFiles/format.dir/format.cc.o -MF CMakeFiles/format.dir/format.cc.o.d -o CMakeFiles/format.dir/format.cc.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/cppformat/format.cc
[ 1%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o -MF CMakeFiles/BamTools.dir/BamAlignment.cpp.o.d -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/BamAlignment.cpp
[ 1%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -MF CMakeFiles/BamTools.dir/BamMultiReader.cpp.o.d -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/BamMultiReader.cpp
[ 1%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Coverage.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include/ConsensusCore -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Coverage.cpp.o -MF CMakeFiles/ConsensusCore.dir/Coverage.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Coverage.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore/Coverage.cpp
[ 1%] Linking CXX static library libgetopt_pp.a
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/getopt_pp && /usr/bin/cmake -P CMakeFiles/getopt_pp.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/getopt_pp && /usr/bin/cmake -E cmake_link_script CMakeFiles/getopt_pp.dir/link.txt --verbose=1
/usr/bin/ar qc libgetopt_pp.a CMakeFiles/getopt_pp.dir/getopt_pp.cpp.o
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make[4]: Leaving directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
[ 1%] Built target getopt_pp
make -f ext/llvm/CMakeFiles/llvm-support.dir/build.make ext/llvm/CMakeFiles/llvm-support.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm/CMakeFiles/llvm-support.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
make -f ext/llvm/CMakeFiles/llvm-support.dir/build.make ext/llvm/CMakeFiles/llvm-support.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
[ 1%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/APFloat.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/APFloat.cpp.o -MF CMakeFiles/llvm-support.dir/APFloat.cpp.o.d -o CMakeFiles/llvm-support.dir/APFloat.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/APFloat.cpp
[ 1%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Mutation.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include/ConsensusCore -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Mutation.cpp.o -MF CMakeFiles/ConsensusCore.dir/Mutation.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Mutation.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore/Mutation.cpp
[ 1%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/BamReader.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/BamReader.cpp.o -MF CMakeFiles/BamTools.dir/BamReader.cpp.o.d -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/BamReader.cpp
[ 1%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o -MF CMakeFiles/BamTools.dir/BamWriter.cpp.o.d -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/BamWriter.cpp
[ 1%] Building CXX object ext/cppformat/CMakeFiles/format.dir/posix.cc.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/cppformat && /usr/bin/c++ -DFMT_USE_FILE_DESCRIPTORS=1 -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/cppformat -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -Wextra -pedantic -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/cppformat/CMakeFiles/format.dir/posix.cc.o -MF CMakeFiles/format.dir/posix.cc.o.d -o CMakeFiles/format.dir/posix.cc.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/cppformat/posix.cc
[ 2%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o -MF CMakeFiles/BamTools.dir/SamHeader.cpp.o.d -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/SamHeader.cpp
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cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/cppformat && /usr/bin/cmake -E cmake_link_script CMakeFiles/format.dir/link.txt --verbose=1
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cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/gqf && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/gqf/CMakeFiles/gqf.dir/gqf.c.o -MF CMakeFiles/gqf.dir/gqf.c.o.d -o CMakeFiles/gqf.dir/gqf.c.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/gqf/gqf.c
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/gqf/gqf.c: In function 'qf_deserialize':
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/gqf/gqf.c:1606:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
1606 | fread(qf->metadata, sizeof(qfmetadata), 1, fin);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/gqf/gqf.c:1615:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
1615 | fread(qf->blocks, qf->metadata->size, 1, fin);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 2%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o
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cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/gqf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gqf.dir/link.txt --verbose=1
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cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/edlib && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/edlib/CMakeFiles/edlib.dir/edlib.cpp.o -MF CMakeFiles/edlib.dir/edlib.cpp.o.d -o CMakeFiles/edlib.dir/edlib.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/edlib/edlib.cpp
[ 3%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -MF CMakeFiles/BamTools.dir/SamReadGroup.cpp.o.d -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/SamReadGroup.cpp
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cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -MF CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/SamReadGroupDictionary.cpp
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cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/gfa1 && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/gfa1/CMakeFiles/gfa1.dir/gfa.c.o -MF CMakeFiles/gfa1.dir/gfa.c.o.d -o CMakeFiles/gfa1.dir/gfa.c.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/gfa1/gfa.c
[ 5%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o -MF CMakeFiles/BamTools.dir/SamSequence.cpp.o.d -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/SamSequence.cpp
In file included from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/gfa1/gfa.c:1093:
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/gfa1/kdq.h:9:24: error: width of 'front' exceeds its type
9 | size_t front:58, bits:6, count, mask; \
| ^~~~~
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/gfa1/kdq.h:93:9: note: in expansion of macro '__KDQ_TYPE'
93 | __KDQ_TYPE(type) \
| ^~~~~~~~~~
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/gfa1/kdq.h:104:24: note: in expansion of macro 'KDQ_INIT2'
104 | #define KDQ_INIT(type) KDQ_INIT2(type, static inline klib_unused)
| ^~~~~~~~~
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/gfa1/gfa.c:1094:1: note: in expansion of macro 'KDQ_INIT'
1094 | KDQ_INIT(uint64_t)
| ^~~~~~~~
make[4]: *** [ext/gfa1/CMakeFiles/gfa1.dir/build.make:79: ext/gfa1/CMakeFiles/gfa1.dir/gfa.c.o] Error 1
make[4]: Leaving directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: *** [CMakeFiles/Makefile2:1536: ext/gfa1/CMakeFiles/gfa1.dir/all] Error 2
make[3]: *** Waiting for unfinished jobs....
[ 5%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/APInt.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/APInt.cpp.o -MF CMakeFiles/llvm-support.dir/APInt.cpp.o.d -o CMakeFiles/llvm-support.dir/APInt.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/APInt.cpp
[ 5%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Atomic.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Atomic.cpp.o -MF CMakeFiles/llvm-support.dir/Atomic.cpp.o.d -o CMakeFiles/llvm-support.dir/Atomic.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/Atomic.cpp
[ 5%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -MF CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/SamSequenceDictionary.cpp
[ 5%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Sequence.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include/ConsensusCore -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Sequence.cpp.o -MF CMakeFiles/ConsensusCore.dir/Sequence.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Sequence.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore/Sequence.cpp
[ 6%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o -MF CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o.d -o CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/CrashRecoveryContext.cpp
[ 6%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Utils.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include/ConsensusCore -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Utils.cpp.o -MF CMakeFiles/ConsensusCore.dir/Utils.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Utils.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore/Utils.cpp
[ 6%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Version.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include/ConsensusCore -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Version.cpp.o -MF CMakeFiles/ConsensusCore.dir/Version.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Version.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore/Version.cpp
[ 6%] Building CXX object ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/ConsensusCore && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include/ConsensusCore -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o -MF CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o.d -o CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore/Matrix/DenseMatrix.cpp
[ 6%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/bam/BamHeader_p.cpp
In file included from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/ConsensusCore/Matrix/DenseMatrix.cpp:39:
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include/ConsensusCore/Matrix/DenseMatrix.hpp:40:10: fatal error: xmmintrin.h: No such file or directory
40 | #include <xmmintrin.h>
| ^~~~~~~~~~~~~
compilation terminated.
make[4]: *** [ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/build.make:177: ext/ConsensusCore/CMakeFiles/ConsensusCore.dir/Matrix/DenseMatrix.cpp.o] Error 1
make[4]: *** Waiting for unfinished jobs....
[ 6%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/bam/BamMultiReader_p.cpp
[ 6%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Debug.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Debug.cpp.o -MF CMakeFiles/llvm-support.dir/Debug.cpp.o.d -o CMakeFiles/llvm-support.dir/Debug.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/Debug.cpp
[ 6%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o
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[ 7%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o
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[ 7%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Error.cpp.o
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[ 7%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/bam/BamWriter_p.cpp
[ 7%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamIndexFactory_p.cpp
[ 7%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp
[ 7%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o -MF CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o.d -o CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/ErrorHandling.cpp
[ 9%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/FoldingSet.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/FoldingSet.cpp.o -MF CMakeFiles/llvm-support.dir/FoldingSet.cpp.o.d -o CMakeFiles/llvm-support.dir/FoldingSet.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/FoldingSet.cpp
[ 9%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:21:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
[ 9%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o -MF CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o.d -o CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/FormatVariadic.cpp
[ 9%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Hashing.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Hashing.cpp.o -MF CMakeFiles/llvm-support.dir/Hashing.cpp.o.d -o CMakeFiles/llvm-support.dir/Hashing.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/Hashing.cpp
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:788:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:788:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include/bamtools/api/BamAux.h:18,
from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include/bamtools/api/BamAlignment.h:14,
from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BtiBlock&}; _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiBlock>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
inlined from 'void BamTools::Internal::BamToolsIndex::ReadBlocks(const BamTools::Internal::BtiReferenceSummary&, BamTools::Internal::BtiBlockVector&)' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp:537:25:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include/bamtools/api/BamAux.h:18,
from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include/bamtools/api/BamAlignment.h:14,
from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BaiAlignmentChunk&}; _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BaiAlignmentChunk>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {BamTools::Internal::BtiReferenceSummary}; _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiReferenceSummary>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
inlined from 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:587:27:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
inlined from 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:608:35:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {BamTools::Internal::BtiReferenceSummary}; _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void BamTools::Internal::BamToolsIndex::InitializeFileSummary(const int&)' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp:359:37:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiReferenceSummary*, std::vector<BamTools::Internal::BtiReferenceSummary> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp:191:46:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp:231:42:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamToolsIndex_p.cpp:249:38:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 9%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Host.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Host.cpp.o -MF CMakeFiles/llvm-support.dir/Host.cpp.o.d -o CMakeFiles/llvm-support.dir/Host.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/Host.cpp
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
inlined from 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:731:28:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
inlined from 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:724:28:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
523 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
inlined from 'void BamTools::Internal::BamStandardIndex::SaveLinearOffsetEntry(BamTools::Internal::BaiLinearOffsetVector&, const int&, const int&, const uint64_t&)' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:754:23:
/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1032 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 10%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/BamDeviceFactory_p.cpp
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<long long int>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void BamTools::Internal::BamStandardIndex::CalculateCandidateOffsets(const BamTools::Internal::BaiReferenceSummary&, const uint64_t&, std::set<short unsigned int>&, std::vector<long long int>&)' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:164:38:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:457:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/index/BamStandardIndex_p.cpp:457:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 10%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/JSON.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/JSON.cpp.o -MF CMakeFiles/llvm-support.dir/JSON.cpp.o.d -o CMakeFiles/llvm-support.dir/JSON.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/JSON.cpp
[ 10%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/BamFile_p.cpp
[ 10%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/BgzfStream_p.cpp
[ 10%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/ByteArray_p.cpp
[ 11%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/LEB128.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/LEB128.cpp.o -MF CMakeFiles/llvm-support.dir/LEB128.cpp.o.d -o CMakeFiles/llvm-support.dir/LEB128.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/LEB128.cpp
[ 11%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/ILocalIODevice_p.cpp
[ 12%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/ParallelBgzfStream_p.cpp
[ 12%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/RollingBuffer_p.cpp
[ 12%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/LineIterator.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/LineIterator.cpp.o -MF CMakeFiles/llvm-support.dir/LineIterator.cpp.o.d -o CMakeFiles/llvm-support.dir/LineIterator.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/LineIterator.cpp
[ 12%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Locale.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Locale.cpp.o -MF CMakeFiles/llvm-support.dir/Locale.cpp.o.d -o CMakeFiles/llvm-support.dir/Locale.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/Locale.cpp
[ 12%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/SerialBgzfStream_p.cpp
[ 12%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/MD5.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/MD5.cpp.o -MF CMakeFiles/llvm-support.dir/MD5.cpp.o.d -o CMakeFiles/llvm-support.dir/MD5.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/MD5.cpp
[ 12%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.c
In file included from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.c:32:
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.c: In function 'bgzf_check_EOF':
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:73:34: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
73 | #define _bgzf_read(fp, buf, len) fread(buf, 1, len, (_bgzf_file_t)fp)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.c:578:9: note: in expansion of macro '_bgzf_read'
578 | _bgzf_read(fp->fp, buf, 28);
| ^~~~~~~~~~
[ 12%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o -MF CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o.d -o CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/ManagedStatic.cpp
[ 12%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c
In file included from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c:46:
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c: In function 'kftp_send_cmd':
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.h:9:32: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
9 | #define netwrite(fd, ptr, len) write(fd, ptr, len)
| ^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c:236:9: note: in expansion of macro 'netwrite'
236 | netwrite(ftp->ctrl_fd, cmd, strlen(cmd));
| ^~~~~~~~
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c: In function 'khttp_connect_file':
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.h:9:32: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
9 | #define netwrite(fd, ptr, len) write(fd, ptr, len)
| ^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/knetfile.c:415:9: note: in expansion of macro 'netwrite'
415 | netwrite(fp->fd, buf, l);
| ^~~~~~~~
[ 13%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/block.c
[ 14%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/MemAlloc.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/MemAlloc.cpp.o -MF CMakeFiles/llvm-support.dir/MemAlloc.cpp.o.d -o CMakeFiles/llvm-support.dir/MemAlloc.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/MemAlloc.cpp
In file included from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/block.c:5:
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined
8 | safe_mutex_unlock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined
5 | safe_mutex_lock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/block.c:4:
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined
240 | unpackInt16(const uint8_t* buffer);
| ^~~~~~~~~~~
[ 14%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/MemoryBuffer.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/MemoryBuffer.cpp.o -MF CMakeFiles/llvm-support.dir/MemoryBuffer.cpp.o.d -o CMakeFiles/llvm-support.dir/MemoryBuffer.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/MemoryBuffer.cpp
[ 14%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/consumer.c
In file included from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/consumer.c:12:
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined
8 | safe_mutex_unlock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined
5 | safe_mutex_lock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/consumer.c:11:
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined
240 | unpackInt16(const uint8_t* buffer);
| ^~~~~~~~~~~
[ 14%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/pbgzf.c
In file included from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/pbgzf.c:14:
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined
8 | safe_mutex_unlock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined
5 | safe_mutex_lock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/pbgzf.c:13:
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined
240 | unpackInt16(const uint8_t* buffer);
| ^~~~~~~~~~~
[ 14%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/queue.c
In file included from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/queue.c:6:
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined
8 | safe_mutex_unlock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined
5 | safe_mutex_lock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~
[ 14%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/NativeFormatting.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/NativeFormatting.cpp.o -MF CMakeFiles/llvm-support.dir/NativeFormatting.cpp.o.d -o CMakeFiles/llvm-support.dir/NativeFormatting.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/NativeFormatting.cpp
[ 14%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Path.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Path.cpp.o -MF CMakeFiles/llvm-support.dir/Path.cpp.o.d -o CMakeFiles/llvm-support.dir/Path.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/Path.cpp
[ 14%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/reader.c
In file included from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/reader.c:8:
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined
8 | safe_mutex_unlock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined
5 | safe_mutex_lock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/reader.c:7:
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined
240 | unpackInt16(const uint8_t* buffer);
| ^~~~~~~~~~~
[ 15%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.c
[ 15%] Building C object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cc -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o -MF CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o.d -o CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/writer.c
In file included from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/pbgzf.h:11,
from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/writer.c:10:
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:8:1: warning: inline function 'safe_mutex_unlock' declared but never defined
8 | safe_mutex_unlock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/util.h:5:1: warning: inline function 'safe_mutex_lock' declared but never defined
5 | safe_mutex_lock(pthread_mutex_t *mutex);
| ^~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/writer.c:7:
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/io/pbgzf/bgzf.h:240:11: warning: inline function 'unpackInt16' declared but never defined
240 | unpackInt16(const uint8_t* buffer);
| ^~~~~~~~~~~
[ 15%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/sam/SamFormatParser_p.cpp
[ 15%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Process.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Process.cpp.o -MF CMakeFiles/llvm-support.dir/Process.cpp.o.d -o CMakeFiles/llvm-support.dir/Process.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/Process.cpp
[ 17%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Program.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Program.cpp.o -MF CMakeFiles/llvm-support.dir/Program.cpp.o.d -o CMakeFiles/llvm-support.dir/Program.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/Program.cpp
In file included from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/Process.cpp:100:
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/Process.inc: In static member function 'static size_t llvm::sys::Process::GetMallocUsage()':
/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/Process.inc:94:18: warning: 'mallinfo mallinfo()' is deprecated [-Wdeprecated-declarations]
94 | mi = ::mallinfo();
| ~~~~~~~~~~^~
In file included from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/Process.inc:35:
/usr/include/malloc.h:118:24: note: declared here
118 | extern struct mallinfo mallinfo (void) __THROW __MALLOC_DEPRECATED;
| ^~~~~~~~
[ 17%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/sam/SamFormatPrinter_p.cpp
[ 17%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Regex.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Regex.cpp.o -MF CMakeFiles/llvm-support.dir/Regex.cpp.o.d -o CMakeFiles/llvm-support.dir/Regex.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/Regex.cpp
[ 17%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/sam/SamHeaderValidator_p.cpp
[ 17%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Signals.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Signals.cpp.o -MF CMakeFiles/llvm-support.dir/Signals.cpp.o.d -o CMakeFiles/llvm-support.dir/Signals.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/Signals.cpp
[ 17%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/SmallVector.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/SmallVector.cpp.o -MF CMakeFiles/llvm-support.dir/SmallVector.cpp.o.d -o CMakeFiles/llvm-support.dir/SmallVector.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/SmallVector.cpp
[ 17%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/SourceMgr.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/SourceMgr.cpp.o -MF CMakeFiles/llvm-support.dir/SourceMgr.cpp.o.d -o CMakeFiles/llvm-support.dir/SourceMgr.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/SourceMgr.cpp
[ 18%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/StringExtras.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/StringExtras.cpp.o -MF CMakeFiles/llvm-support.dir/StringExtras.cpp.o.d -o CMakeFiles/llvm-support.dir/StringExtras.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/StringExtras.cpp
[ 19%] Building CXX object ext/bamtools/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/src -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/bamtools/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -MF CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o.d -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/bamtools/api/internal/utils/BamException_p.cpp
[ 19%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/StringMap.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/StringMap.cpp.o -MF CMakeFiles/llvm-support.dir/StringMap.cpp.o.d -o CMakeFiles/llvm-support.dir/StringMap.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/StringMap.cpp
[ 19%] Linking CXX static library libBamTools.a
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cmake -P CMakeFiles/BamTools.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/bamtools/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1
/usr/bin/ar qc libBamTools.a CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ParallelBgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/SerialBgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/pbgzf/bgzf.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/knetfile.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/block.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/consumer.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/pbgzf.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/queue.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/reader.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/util.c.o CMakeFiles/BamTools.dir/internal/io/pbgzf/writer.c.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o
/usr/bin/ranlib libBamTools.a
[ 19%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/StringRef.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/StringRef.cpp.o -MF CMakeFiles/llvm-support.dir/StringRef.cpp.o.d -o CMakeFiles/llvm-support.dir/StringRef.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/StringRef.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
[ 19%] Built target BamTools
[ 19%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/StringSaver.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/StringSaver.cpp.o -MF CMakeFiles/llvm-support.dir/StringSaver.cpp.o.d -o CMakeFiles/llvm-support.dir/StringSaver.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/StringSaver.cpp
[ 19%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o -MF CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o.d -o CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/ThreadLocal.cpp
[ 20%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Threading.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Threading.cpp.o -MF CMakeFiles/llvm-support.dir/Threading.cpp.o.d -o CMakeFiles/llvm-support.dir/Threading.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/Threading.cpp
[ 20%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o -MF CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o.d -o CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/TimeProfiler.cpp
[ 20%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Twine.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Twine.cpp.o -MF CMakeFiles/llvm-support.dir/Twine.cpp.o.d -o CMakeFiles/llvm-support.dir/Twine.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/Twine.cpp
[ 20%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/Unicode.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/Unicode.cpp.o -MF CMakeFiles/llvm-support.dir/Unicode.cpp.o.d -o CMakeFiles/llvm-support.dir/Unicode.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/Unicode.cpp
[ 20%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/WithColor.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/WithColor.cpp.o -MF CMakeFiles/llvm-support.dir/WithColor.cpp.o.d -o CMakeFiles/llvm-support.dir/WithColor.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/WithColor.cpp
[ 21%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/YAMLParser.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/YAMLParser.cpp.o -MF CMakeFiles/llvm-support.dir/YAMLParser.cpp.o.d -o CMakeFiles/llvm-support.dir/YAMLParser.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/YAMLParser.cpp
[ 21%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o -MF CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o.d -o CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/YAMLTraits.cpp
In file included from /usr/include/c++/12/algorithm:61,
from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include/llvm/ADT/iterator.h:13,
from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include/llvm/ADT/STLExtras.h:20,
from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include/llvm/Support/Error.h:16,
from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include/llvm/Support/TimeProfiler.h:12,
from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/TimeProfiler.cpp:13:
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)> >]':
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)> >]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
In file included from /usr/include/c++/12/bits/stl_algo.h:60:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Distance = int; _Tp = pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)> >]':
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
[ 21%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o -MF CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o.d -o CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/raw_os_ostream.cpp
In file included from /usr/include/c++/12/vector:70,
from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include/llvm/ADT/ArrayRef.h:25,
from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include/llvm/ADT/StringExtras.h:16,
from /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include/llvm/Support/Error.h:18:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, const std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > >&}; _Tp = std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > >]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > >::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)> >]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, const std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > >&}; _Tp = std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >; _Alloc = std::allocator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > >]',
inlined from 'void llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/TimeProfiler.cpp:188:32:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)> >]',
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Compare = llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from 'void llvm::sort(IteratorTy, IteratorTy, Compare) [with IteratorTy = __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >; Compare = TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)>]' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include/llvm/ADT/STLExtras.h:1440:12,
inlined from 'void llvm::sort(Container&&, Compare) [with Container = std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > >&; Compare = TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)>]' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include/llvm/ADT/STLExtras.h:1445:13,
inlined from 'void llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/TimeProfiler.cpp:190:15:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)> >]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)> >]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > >*, vector<pair<__cxx11::basic_string<char>, pair<unsigned int, chrono::duration<long long int, ratio<1, 1000000000> > > > > >; _Compare = llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)>]' at /usr/include/c++/12/bits/stl_algo.h:4853:18,
inlined from 'void llvm::sort(IteratorTy, IteratorTy, Compare) [with IteratorTy = __gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >; Compare = TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)>]' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include/llvm/ADT/STLExtras.h:1440:12,
inlined from 'void llvm::sort(Container&&, Compare) [with Container = std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > >&; Compare = TimeTraceProfiler::write(llvm::raw_pwrite_stream&)::<lambda(const NameAndCountAndDurationType&, const NameAndCountAndDurationType&)>]' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include/llvm/ADT/STLExtras.h:1445:13,
inlined from 'void llvm::TimeTraceProfiler::write(llvm::raw_pwrite_stream&)' at /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/TimeProfiler.cpp:190:15:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > >*, std::vector<std::pair<std::__cxx11::basic_string<char>, std::pair<unsigned int, std::chrono::duration<long long int, std::ratio<1, 1000000000> > > > > >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 21%] Building CXX object ext/llvm/CMakeFiles/llvm-support.dir/raw_ostream.cpp.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/c++ -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -std=gnu++14 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/raw_ostream.cpp.o -MF CMakeFiles/llvm-support.dir/raw_ostream.cpp.o.d -o CMakeFiles/llvm-support.dir/raw_ostream.cpp.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/raw_ostream.cpp
[ 22%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regerror.c.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regerror.c.o -MF CMakeFiles/llvm-support.dir/regerror.c.o.d -o CMakeFiles/llvm-support.dir/regerror.c.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/regerror.c
[ 22%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regcomp.c.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regcomp.c.o -MF CMakeFiles/llvm-support.dir/regcomp.c.o.d -o CMakeFiles/llvm-support.dir/regcomp.c.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/regcomp.c
[ 22%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regexec.c.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regexec.c.o -MF CMakeFiles/llvm-support.dir/regexec.c.o.d -o CMakeFiles/llvm-support.dir/regexec.c.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/regexec.c
[ 22%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regfree.c.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regfree.c.o -MF CMakeFiles/llvm-support.dir/regfree.c.o.d -o CMakeFiles/llvm-support.dir/regfree.c.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/regfree.c
[ 22%] Building C object ext/llvm/CMakeFiles/llvm-support.dir/regstrlcpy.c.o
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cc -DNDEBUG -DUSE_GLIBCXX_PARALLEL=1 -D__STDC_CONSTANT_MACROS -D__STDC_LIMIT_MACROS -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/common -I/<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/src/../ext/include -isystem /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/spades-3.15.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-deprecated -O2 -MD -MT ext/llvm/CMakeFiles/llvm-support.dir/regstrlcpy.c.o -MF CMakeFiles/llvm-support.dir/regstrlcpy.c.o.d -o CMakeFiles/llvm-support.dir/regstrlcpy.c.o -c /<<BUILDDIR>>/spades-3.15.5+dfsg/assembler/ext/src/llvm/regstrlcpy.c
[ 22%] Linking CXX static library libllvm-support.a
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cmake -P CMakeFiles/llvm-support.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf/ext/llvm && /usr/bin/cmake -E cmake_link_script CMakeFiles/llvm-support.dir/link.txt --verbose=1
/usr/bin/ar qc libllvm-support.a "CMakeFiles/llvm-support.dir/APFloat.cpp.o" "CMakeFiles/llvm-support.dir/APInt.cpp.o" "CMakeFiles/llvm-support.dir/Atomic.cpp.o" "CMakeFiles/llvm-support.dir/CrashRecoveryContext.cpp.o" "CMakeFiles/llvm-support.dir/Debug.cpp.o" "CMakeFiles/llvm-support.dir/Errno.cpp.o" "CMakeFiles/llvm-support.dir/Error.cpp.o" "CMakeFiles/llvm-support.dir/ErrorHandling.cpp.o" "CMakeFiles/llvm-support.dir/FoldingSet.cpp.o" "CMakeFiles/llvm-support.dir/FormatVariadic.cpp.o" "CMakeFiles/llvm-support.dir/Hashing.cpp.o" "CMakeFiles/llvm-support.dir/Host.cpp.o" "CMakeFiles/llvm-support.dir/JSON.cpp.o" "CMakeFiles/llvm-support.dir/LEB128.cpp.o" "CMakeFiles/llvm-support.dir/LineIterator.cpp.o" "CMakeFiles/llvm-support.dir/Locale.cpp.o" "CMakeFiles/llvm-support.dir/MD5.cpp.o" "CMakeFiles/llvm-support.dir/ManagedStatic.cpp.o" "CMakeFiles/llvm-support.dir/MemAlloc.cpp.o" "CMakeFiles/llvm-support.dir/MemoryBuffer.cpp.o" "CMakeFiles/llvm-support.dir/NativeFormatting.cpp.o" "CMakeFiles/llvm-support.dir/Path.cpp.o" "CMakeFiles/llvm-support.dir/Process.cpp.o" "CMakeFiles/llvm-support.dir/Program.cpp.o" "CMakeFiles/llvm-support.dir/Regex.cpp.o" "CMakeFiles/llvm-support.dir/Signals.cpp.o" "CMakeFiles/llvm-support.dir/SmallVector.cpp.o" "CMakeFiles/llvm-support.dir/SourceMgr.cpp.o" "CMakeFiles/llvm-support.dir/StringExtras.cpp.o" "CMakeFiles/llvm-support.dir/StringMap.cpp.o" "CMakeFiles/llvm-support.dir/StringRef.cpp.o" "CMakeFiles/llvm-support.dir/StringSaver.cpp.o" "CMakeFiles/llvm-support.dir/ThreadLocal.cpp.o" "CMakeFiles/llvm-support.dir/Threading.cpp.o" "CMakeFiles/llvm-support.dir/TimeProfiler.cpp.o" "CMakeFiles/llvm-support.dir/Twine.cpp.o" "CMakeFiles/llvm-support.dir/Unicode.cpp.o" "CMakeFiles/llvm-support.dir/WithColor.cpp.o" "CMakeFiles/llvm-support.dir/YAMLParser.cpp.o" "CMakeFiles/llvm-support.dir/YAMLTraits.cpp.o" "CMakeFiles/llvm-support.dir/raw_os_ostream.cpp.o" "CMakeFiles/llvm-support.dir/raw_ostream.cpp.o" "CMakeFiles/llvm-support.dir/regcomp.c.o" "CMakeFiles/llvm-support.dir/regerror.c.o" "CMakeFiles/llvm-support.dir/regexec.c.o" "CMakeFiles/llvm-support.dir/regfree.c.o" "CMakeFiles/llvm-support.dir/regstrlcpy.c.o"
/usr/bin/ranlib libllvm-support.a
make[4]: Leaving directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
[ 22%] Built target llvm-support
make[3]: Leaving directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
make[2]: *** [Makefile:169: all] Error 2
make[2]: Leaving directory '/<<BUILDDIR>>/spades-3.15.5+dfsg/obj-arm-linux-gnueabihf'
dh_auto_build: error: cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" all debruijn_test include_test VERBOSE=1 returned exit code 2
make[1]: *** [debian/rules:29: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<BUILDDIR>>/spades-3.15.5+dfsg'
make: *** [debian/rules:14: binary-arch] Error 2
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2022-09-13T12:49:48Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 533
Distribution: bookworm-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 984
Job: spades_3.15.5+dfsg-1
Machine Architecture: armhf
Package: spades
Package-Time: 1586
Source-Version: 3.15.5+dfsg-1
Space: 0
Status: failed
Version: 3.15.5+dfsg-1
--------------------------------------------------------------------------------
Finished at 2022-09-13T12:49:48Z
Build needed 00:00:00, 0k disc space