snp-sites →
2.0.2-1 →
armhf → 2015-09-22 11:35:25
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-02
╔══════════════════════════════════════════════════════════════════════════════╗
║ snp-sites 2.0.2-1 (armhf) 22 Sep 2015 11:26 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: snp-sites
Version: 2.0.2-1
Source Version: 2.0.2-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/snp-sites-jmDm8G/snp-sites-2.0.2' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/snp-sites-jmDm8G' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-757f7086-08d6-41de-92a4-766f33f265c3' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8313 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [10.1 MB]
Ign http://172.17.0.1 stretch-staging/main Translation-en
Fetched 18.5 MB in 34s (533 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'snp-sites' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/snp-sites.git
Need to get 48.9 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main snp-sites 2.0.2-1 (dsc) [2223 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main snp-sites 2.0.2-1 (tar) [43.1 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main snp-sites 2.0.2-1 (diff) [3616 B]
Fetched 48.9 kB in 0s (1331 kB/s)
Download complete and in download only mode
Check architectures
───────────────────
Check dependencies
──────────────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-pWEF6f/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 22 not upgraded.
Need to get 0 B/766 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12875 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9.0.0), autotools-dev, zlib1g-dev, check, dh-autoreconf, d-shlibs, libxml2-utils, docbook, docbook-xsl, xsltproc, asciidoc, libsubunit-dev
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9.0.0), autotools-dev, zlib1g-dev, check, dh-autoreconf, d-shlibs, libxml2-utils, docbook, docbook-xsl, xsltproc, asciidoc, libsubunit-dev
dpkg-deb: building package 'sbuild-build-depends-snp-sites-dummy' in '/«BUILDDIR»/resolver-SdUTSI/apt_archive/sbuild-build-depends-snp-sites-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install snp-sites build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
asciidoc autoconf automake autopoint autotools-dev bsdmainutils check
d-shlibs debhelper dh-autoreconf docbook docbook-xsl file gettext
gettext-base groff-base intltool-debian libcroco3 libexpat1 libffi6
libglib2.0-0 libmagic1 libpipeline1 libpython-stdlib libpython2.7-minimal
libpython2.7-stdlib libsigsegv2 libsqlite3-0 libssl1.0.0 libsubunit-dev
libsubunit0 libtool libunistring0 libxml2 libxml2-utils libxslt1.1 m4 man-db
mime-support po-debconf python python-minimal python2.7 python2.7-minimal
sgml-base sgml-data xml-core xsltproc zlib1g-dev
Suggested packages:
source-highlight vim-addon-manager autoconf-archive gnu-standards
autoconf-doc wamerican wordlist whois vacation dh-make docbook-defguide
docbook-dsssl docbook-xml psgml dbtoepub docbook-xsl-doc-html
docbook-xsl-doc-pdf docbook-xsl-doc-text docbook-xsl-doc docbook-xsl-saxon
fop libsaxon-java libxalan2-java libxslthl-java xalan gettext-doc
libasprintf-dev libgettextpo-dev groff libtool-doc automaken gfortran
fortran95-compiler gcj-jdk less www-browser libmail-box-perl python-doc
python-tk python2.7-doc binfmt-support sgml-base-doc perlsgml w3-recs opensp
Recommended packages:
dblatex docbook-utils xmlto curl wget lynx-cur libglib2.0-data
shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
asciidoc autoconf automake autopoint autotools-dev bsdmainutils check
d-shlibs debhelper dh-autoreconf docbook docbook-xsl file gettext
gettext-base groff-base intltool-debian libcroco3 libexpat1 libffi6
libglib2.0-0 libmagic1 libpipeline1 libpython-stdlib libpython2.7-minimal
libpython2.7-stdlib libsigsegv2 libsqlite3-0 libssl1.0.0 libsubunit-dev
libsubunit0 libtool libunistring0 libxml2 libxml2-utils libxslt1.1 m4 man-db
mime-support po-debconf python python-minimal python2.7 python2.7-minimal
sbuild-build-depends-snp-sites-dummy sgml-base sgml-data xml-core xsltproc
zlib1g-dev
0 upgraded, 50 newly installed, 0 to remove and 22 not upgraded.
Need to get 20.3 MB/20.3 MB of archives.
After this operation, 74.1 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.1-1 [23.9 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.3-1 [975 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.1+dfsg1-5 [703 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main libpython2.7-minimal armhf 2.7.10-4 [379 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main python2.7-minimal armhf 2.7.10-4 [1092 kB]
Get:8 http://172.17.0.1/private/ stretch-staging/main python-minimal armhf 2.7.9-1 [40.1 kB]
Get:9 http://172.17.0.1/private/ stretch-staging/main mime-support all 3.59 [36.4 kB]
Get:10 http://172.17.0.1/private/ stretch-staging/main libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.2.1-3 [18.5 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main libsqlite3-0 armhf 3.8.11.1-1 [391 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main libssl1.0.0 armhf 1.0.2d-1 [882 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main libpython2.7-stdlib armhf 2.7.10-4 [1736 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main python2.7 armhf 2.7.10-4 [258 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main libpython-stdlib armhf 2.7.9-1 [19.6 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main python armhf 2.7.9-1 [151 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.44.1-1.1 [2312 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main libsigsegv2 armhf 2.10-4 [28.2 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main libsubunit0 armhf 0.0.18-4 [8334 B]
Get:22 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main sgml-base all 1.26+nmu4 [14.6 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.24-2 [249 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.24-2 [60.9 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.6-1 [119 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main m4 armhf 1.4.17-4 [238 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main asciidoc all 8.6.9-3 [830 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main autoconf all 2.69-9 [338 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main autotools-dev all 20150820.1 [71.7 kB]
Get:31 http://172.17.0.1/private/ stretch-staging/main automake all 1:1.15-3 [735 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main autopoint all 0.19.6-1 [429 kB]
Get:33 http://172.17.0.1/private/ stretch-staging/main libsubunit-dev armhf 0.0.18-4 [9132 B]
Get:34 http://172.17.0.1/private/ stretch-staging/main check armhf 0.10.0-2 [178 kB]
Get:35 http://172.17.0.1/private/ stretch-staging/main d-shlibs all 0.62 [16.9 kB]
Get:36 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.6-1 [1393 kB]
Get:37 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:38 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:39 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20150811 [817 kB]
Get:40 http://172.17.0.1/private/ stretch-staging/main libtool all 2.4.2-1.11 [190 kB]
Get:41 http://172.17.0.1/private/ stretch-staging/main dh-autoreconf all 10 [15.2 kB]
Get:42 http://172.17.0.1/private/ stretch-staging/main xml-core all 0.13+nmu2 [24.2 kB]
Get:43 http://172.17.0.1/private/ stretch-staging/main sgml-data all 2.0.10 [181 kB]
Get:44 http://172.17.0.1/private/ stretch-staging/main docbook all 4.5-5.1 [453 kB]
Get:45 http://172.17.0.1/private/ stretch-staging/main docbook-xsl all 1.78.1+dfsg-1 [2339 kB]
Get:46 http://172.17.0.1/private/ stretch-staging/main libxml2-utils armhf 2.9.1+dfsg1-5 [89.4 kB]
Get:47 http://172.17.0.1/private/ stretch-staging/main libxslt1.1 armhf 1.1.28-2+b2 [211 kB]
Get:48 http://172.17.0.1/private/ stretch-staging/main xsltproc armhf 1.1.28-2+b2 [118 kB]
Get:49 http://172.17.0.1/private/ stretch-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 20.3 MB in 5s (3731 kB/s)
Selecting previously unselected package groff-base.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12875 files and directories currently installed.)
Preparing to unpack .../groff-base_1.22.3-1_armhf.deb ...
Unpacking groff-base (1.22.3-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_9.0.6_armhf.deb ...
Unpacking bsdmainutils (9.0.6) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../libpipeline1_1.4.1-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../man-db_2.7.3-1_armhf.deb ...
Unpacking man-db (2.7.3-1) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../libxml2_2.9.1+dfsg1-5_armhf.deb ...
Unpacking libxml2:armhf (2.9.1+dfsg1-5) ...
Selecting previously unselected package libpython2.7-minimal:armhf.
Preparing to unpack .../libpython2.7-minimal_2.7.10-4_armhf.deb ...
Unpacking libpython2.7-minimal:armhf (2.7.10-4) ...
Selecting previously unselected package python2.7-minimal.
Preparing to unpack .../python2.7-minimal_2.7.10-4_armhf.deb ...
Unpacking python2.7-minimal (2.7.10-4) ...
Selecting previously unselected package python-minimal.
Preparing to unpack .../python-minimal_2.7.9-1_armhf.deb ...
Unpacking python-minimal (2.7.9-1) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../mime-support_3.59_all.deb ...
Unpacking mime-support (3.59) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.1.0-7_armhf.deb ...
Unpacking libexpat1:armhf (2.1.0-7) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../libffi6_3.2.1-3_armhf.deb ...
Unpacking libffi6:armhf (3.2.1-3) ...
Selecting previously unselected package libsqlite3-0:armhf.
Preparing to unpack .../libsqlite3-0_3.8.11.1-1_armhf.deb ...
Unpacking libsqlite3-0:armhf (3.8.11.1-1) ...
Selecting previously unselected package libssl1.0.0:armhf.
Preparing to unpack .../libssl1.0.0_1.0.2d-1_armhf.deb ...
Unpacking libssl1.0.0:armhf (1.0.2d-1) ...
Selecting previously unselected package libpython2.7-stdlib:armhf.
Preparing to unpack .../libpython2.7-stdlib_2.7.10-4_armhf.deb ...
Unpacking libpython2.7-stdlib:armhf (2.7.10-4) ...
Selecting previously unselected package python2.7.
Preparing to unpack .../python2.7_2.7.10-4_armhf.deb ...
Unpacking python2.7 (2.7.10-4) ...
Selecting previously unselected package libpython-stdlib:armhf.
Preparing to unpack .../libpython-stdlib_2.7.9-1_armhf.deb ...
Unpacking libpython-stdlib:armhf (2.7.9-1) ...
Setting up libpython2.7-minimal:armhf (2.7.10-4) ...
Setting up python2.7-minimal (2.7.10-4) ...
Setting up python-minimal (2.7.9-1) ...
Selecting previously unselected package python.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 14252 files and directories currently installed.)
Preparing to unpack .../python_2.7.9-1_armhf.deb ...
Unpacking python (2.7.9-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../libglib2.0-0_2.44.1-1.1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.44.1-1.1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../libcroco3_0.6.8-3_armhf.deb ...
Unpacking libcroco3:armhf (0.6.8-3) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../libsigsegv2_2.10-4_armhf.deb ...
Unpacking libsigsegv2:armhf (2.10-4) ...
Selecting previously unselected package libsubunit0:armhf.
Preparing to unpack .../libsubunit0_0.0.18-4_armhf.deb ...
Unpacking libsubunit0:armhf (0.0.18-4) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../libunistring0_0.9.3-5.2_armhf.deb ...
Unpacking libunistring0:armhf (0.9.3-5.2) ...
Selecting previously unselected package sgml-base.
Preparing to unpack .../sgml-base_1.26+nmu4_all.deb ...
Unpacking sgml-base (1.26+nmu4) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../libmagic1_1%3a5.24-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.24-2) ...
Selecting previously unselected package file.
Preparing to unpack .../file_1%3a5.24-2_armhf.deb ...
Unpacking file (1:5.24-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../gettext-base_0.19.6-1_armhf.deb ...
Unpacking gettext-base (0.19.6-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../archives/m4_1.4.17-4_armhf.deb ...
Unpacking m4 (1.4.17-4) ...
Selecting previously unselected package asciidoc.
Preparing to unpack .../asciidoc_8.6.9-3_all.deb ...
Unpacking asciidoc (8.6.9-3) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../autoconf_2.69-9_all.deb ...
Unpacking autoconf (2.69-9) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../autotools-dev_20150820.1_all.deb ...
Unpacking autotools-dev (20150820.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../automake_1%3a1.15-3_all.deb ...
Unpacking automake (1:1.15-3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../autopoint_0.19.6-1_all.deb ...
Unpacking autopoint (0.19.6-1) ...
Selecting previously unselected package libsubunit-dev.
Preparing to unpack .../libsubunit-dev_0.0.18-4_armhf.deb ...
Unpacking libsubunit-dev (0.0.18-4) ...
Selecting previously unselected package check:armhf.
Preparing to unpack .../check_0.10.0-2_armhf.deb ...
Unpacking check:armhf (0.10.0-2) ...
Selecting previously unselected package d-shlibs.
Preparing to unpack .../archives/d-shlibs_0.62_all.deb ...
Unpacking d-shlibs (0.62) ...
Selecting previously unselected package gettext.
Preparing to unpack .../gettext_0.19.6-1_armhf.deb ...
Unpacking gettext (0.19.6-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../po-debconf_1.0.18_all.deb ...
Unpacking po-debconf (1.0.18) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../debhelper_9.20150811_all.deb ...
Unpacking debhelper (9.20150811) ...
Selecting previously unselected package libtool.
Preparing to unpack .../libtool_2.4.2-1.11_all.deb ...
Unpacking libtool (2.4.2-1.11) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../dh-autoreconf_10_all.deb ...
Unpacking dh-autoreconf (10) ...
Selecting previously unselected package xml-core.
Preparing to unpack .../xml-core_0.13+nmu2_all.deb ...
Unpacking xml-core (0.13+nmu2) ...
Selecting previously unselected package sgml-data.
Preparing to unpack .../sgml-data_2.0.10_all.deb ...
Unpacking sgml-data (2.0.10) ...
Selecting previously unselected package docbook.
Preparing to unpack .../docbook_4.5-5.1_all.deb ...
Unpacking docbook (4.5-5.1) ...
Selecting previously unselected package docbook-xsl.
Preparing to unpack .../docbook-xsl_1.78.1+dfsg-1_all.deb ...
Unpacking docbook-xsl (1.78.1+dfsg-1) ...
Selecting previously unselected package libxml2-utils.
Preparing to unpack .../libxml2-utils_2.9.1+dfsg1-5_armhf.deb ...
Unpacking libxml2-utils (2.9.1+dfsg1-5) ...
Selecting previously unselected package libxslt1.1:armhf.
Preparing to unpack .../libxslt1.1_1.1.28-2+b2_armhf.deb ...
Unpacking libxslt1.1:armhf (1.1.28-2+b2) ...
Selecting previously unselected package xsltproc.
Preparing to unpack .../xsltproc_1.1.28-2+b2_armhf.deb ...
Unpacking xsltproc (1.1.28-2+b2) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2+b1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Selecting previously unselected package sbuild-build-depends-snp-sites-dummy.
Preparing to unpack .../sbuild-build-depends-snp-sites-dummy.deb ...
Unpacking sbuild-build-depends-snp-sites-dummy (0.invalid.0) ...
Setting up groff-base (1.22.3-1) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-1) ...
Setting up man-db (2.7.3-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxml2:armhf (2.9.1+dfsg1-5) ...
Setting up mime-support (3.59) ...
Setting up libexpat1:armhf (2.1.0-7) ...
Setting up libffi6:armhf (3.2.1-3) ...
Setting up libsqlite3-0:armhf (3.8.11.1-1) ...
Setting up libssl1.0.0:armhf (1.0.2d-1) ...
Setting up libpython2.7-stdlib:armhf (2.7.10-4) ...
Setting up python2.7 (2.7.10-4) ...
Setting up libpython-stdlib:armhf (2.7.9-1) ...
Setting up python (2.7.9-1) ...
Setting up libglib2.0-0:armhf (2.44.1-1.1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-3) ...
Setting up libsigsegv2:armhf (2.10-4) ...
Setting up libsubunit0:armhf (0.0.18-4) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up sgml-base (1.26+nmu4) ...
Setting up libmagic1:armhf (1:5.24-2) ...
Setting up file (1:5.24-2) ...
Setting up gettext-base (0.19.6-1) ...
Setting up m4 (1.4.17-4) ...
Setting up asciidoc (8.6.9-3) ...
Setting up autoconf (2.69-9) ...
Setting up autotools-dev (20150820.1) ...
Setting up automake (1:1.15-3) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up autopoint (0.19.6-1) ...
Setting up libsubunit-dev (0.0.18-4) ...
Setting up check:armhf (0.10.0-2) ...
Setting up d-shlibs (0.62) ...
Setting up gettext (0.19.6-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.18) ...
Setting up debhelper (9.20150811) ...
Setting up libtool (2.4.2-1.11) ...
Setting up dh-autoreconf (10) ...
Setting up xml-core (0.13+nmu2) ...
Setting up libxml2-utils (2.9.1+dfsg1-5) ...
Setting up libxslt1.1:armhf (1.1.28-2+b2) ...
Setting up xsltproc (1.1.28-2+b2) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Processing triggers for sgml-base (1.26+nmu4) ...
Setting up sgml-data (2.0.10) ...
Setting up docbook-xsl (1.78.1+dfsg-1) ...
Processing triggers for sgml-base (1.26+nmu4) ...
Setting up docbook (4.5-5.1) ...
Processing triggers for sgml-base (1.26+nmu4) ...
Setting up sbuild-build-depends-snp-sites-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-19) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.1-1 dpkg-dev_1.18.2 g++-4.9_4.9.3-4 g++-5_5.2.1-16+rpi1 gcc-4.9_4.9.3-4 gcc-5_5.2.1-16+rpi1 libc6-dev_2.19-19 libstdc++-4.9-dev_4.9.3-4 libstdc++-5-dev_5.2.1-16+rpi1 libstdc++6_5.2.1-16+rpi1 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.10.2 asciidoc_8.6.9-3 autoconf_2.69-9 automake_1:1.15-3 autopoint_0.19.6-1 autotools-dev_20150820.1 base-files_9.4+rpi1 base-passwd_3.5.38 bash_4.3-14 binutils_2.25.1-1 bsdmainutils_9.0.6 bsdutils_1:2.26.2-9 build-essential_11.7 bzip2_1.0.6-8 check_0.10.0-2 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.2.1-4+rpi2 cpp-4.9_4.9.3-4 cpp-5_5.2.1-16+rpi1 d-shlibs_0.62 dash_0.5.7-4 debconf_1.5.57 debfoster_2.7-2 debhelper_9.20150811 debianutils_4.5.1 dh-autoreconf_10 diffutils_1:3.3-1 dmsetup_2:1.02.104-1 docbook_4.5-5.1 docbook-xsl_1.78.1+dfsg-1 dpkg_1.18.2 dpkg-dev_1.18.2 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.24-2 findutils_4.4.2-9 g++_4:5.2.1-4+rpi2 g++-4.9_4.9.3-4 g++-5_5.2.1-16+rpi1 gcc_4:5.2.1-4+rpi2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-4 gcc-4.9_4.9.3-4 gcc-4.9-base_4.9.3-4 gcc-5_5.2.1-16+rpi1 gcc-5-base_5.2.1-16+rpi1 gettext_0.19.6-1 gettext-base_0.19.6-1 gnupg_1.4.19-5 gpgv_1.4.19-5 grep_2.21-2 groff-base_1.22.3-1 gzip_1.6-4 hostname_3.16 init_1.23 init-system-helpers_1.23 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-2+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.9.2-3 libapt-pkg4.12_1.0.9.10 libapt-pkg4.16_1.0.10.2 libasan1_4.9.3-4 libasan2_5.2.1-16+rpi1 libatomic1_5.2.1-16+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-1 libaudit1_1:2.4.4-1 libblkid1_2.26.2-9 libbz2-1.0_1.0.6-8 libc-bin_2.19-19 libc-dev-bin_2.19-19 libc6_2.19-19 libc6-dev_2.19-19 libcap2_1:2.24-11 libcap2-bin_1:2.24-11 libcc1-0_5.2.1-16+rpi1 libcloog-isl4_0.18.3-1 libcomerr2_1.42.13-1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libdb5.3_5.3.28-11 libdbus-1-3_1.8.20-1 libdebconfclient0_0.195 libdevmapper1.02.1_2:1.02.104-1 libdpkg-perl_1.18.2 libdrm2_2.4.64-1 libexpat1_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.26.2-9 libffi6_3.2.1-3 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.3-4 libgcc-5-dev_5.2.1-16+rpi1 libgcc1_1:5.2.1-16+rpi1 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.44.1-1.1 libgmp10_2:6.0.0+dfsg-7+rpi1 libgomp1_5.2.1-16+rpi1 libgpg-error0_1.19-2 libisl13_0.14-2 libklibc_2.0.4-2+rpi1 libkmod2_21-1 liblocale-gettext-perl_1.05-9 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.24-2 libmount1_2.26.2-9 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_6.0+20150810-1 libncursesw5_6.0+20150810-1 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-7.1 libpipeline1_1.4.1-1 libpng12-0_1.2.50-2+b2 libprocps3_2:3.3.9-9 libprocps4_2:3.3.10-2 libpython-stdlib_2.7.9-1 libpython2.7-minimal_2.7.10-4 libpython2.7-stdlib_2.7.10-4 libreadline6_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libsigsegv2_2.10-4 libslang2_2.3.0-2+b1 libsmartcols1_2.26.2-9 libsqlite3-0_3.8.11.1-1 libss2_1.42.13-1 libssl1.0.0_1.0.2d-1 libstdc++-4.9-dev_4.9.3-4 libstdc++-5-dev_5.2.1-16+rpi1 libstdc++6_5.2.1-16+rpi1 libsubunit-dev_0.0.18-4 libsubunit0_0.0.18-4 libsystemd0_225-1 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20150810-1 libtool_2.4.2-1.11 libubsan0_5.2.1-16+rpi1 libudev1_225-1 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.26.2-9 libxml2_2.9.1+dfsg1-5 libxml2-utils_2.9.1+dfsg1-5 libxslt1.1_1.1.28-2+b2 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 m4_1.4.17-4 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.3-1 mawk_1.3.3-17 mime-support_3.59 mount_2.26.2-9 mountall_2.54 multiarch-support_2.19-19 ncurses-base_6.0+20150810-1 ncurses-bin_6.0+20150810-1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 plymouth_0.9.0-9 po-debconf_1.0.18 procps_2:3.3.10-2 python_2.7.9-1 python-minimal_2.7.9-1 python2.7_2.7.10-4 python2.7-minimal_2.7.10-4 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-snp-sites-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 sgml-base_1.26+nmu4 sgml-data_2.0.10 startpar_0.59-3 systemd_225-1 systemd-sysv_225-1 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-1 tzdata_2015f-1 udev_225-1 util-linux_2.26.2-9 xml-core_0.13+nmu2 xsltproc_1.1.28-2+b2 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Wed Sep 16 13:32:42 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./snp-sites_2.0.2-1.dsc
dpkg-source: info: extracting snp-sites in snp-sites-2.0.2
dpkg-source: info: unpacking snp-sites_2.0.2.orig.tar.gz
dpkg-source: info: unpacking snp-sites_2.0.2-1.debian.tar.xz
dpkg-source: info: applying add_lib_subunit.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-757f7086-08d6-41de-92a4-766f33f265c3
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package snp-sites
dpkg-buildpackage: source version 2.0.2-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build snp-sites-2.0.2
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --with autoreconf
dh_testdir
dh_auto_clean
dh_autoreconf_clean
dh_clean
debian/rules build-arch
dh build-arch --with autoreconf
dh_testdir -a
dh_autoreconf -a
libtoolize: putting auxiliary files in `.'.
libtoolize: copying file `./ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'.
libtoolize: copying file `m4/libtool.m4'
libtoolize: copying file `m4/ltoptions.m4'
libtoolize: copying file `m4/ltsugar.m4'
libtoolize: copying file `m4/ltversion.m4'
libtoolize: copying file `m4/lt~obsolete.m4'
configure.ac:7: installing './compile'
configure.ac:7: installing './config.guess'
configure.ac:7: installing './config.sub'
configure.ac:2: installing './install-sh'
configure.ac:2: installing './missing'
src/Makefile.am:26: warning: source file '../tests/check-snp-sites.c' is in a subdirectory,
src/Makefile.am:26: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least a source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled. For now, the corresponding output
automake: object file(s) will be placed in the top-level directory. However,
automake: this behaviour will change in future Automake versions: they will
automake: unconditionally cause object files to be placed in the same subdirectory
automake: of the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibilities.
src/Makefile.am:26: warning: source file '../tests/check-vcf.c' is in a subdirectory,
src/Makefile.am:26: but option 'subdir-objects' is disabled
src/Makefile.am:26: warning: source file '../tests/helper-methods.c' is in a subdirectory,
src/Makefile.am:26: but option 'subdir-objects' is disabled
src/Makefile.am:26: warning: source file '../tests/run-all-tests.c' is in a subdirectory,
src/Makefile.am:26: but option 'subdir-objects' is disabled
src/Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
dh_auto_configure -a
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking dependency style of gcc... (cached) none
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking math.h usability... yes
checking math.h presence... yes
checking for math.h... yes
dh_auto_build -a
make -j1
make[1]: Entering directory '/«PKGBUILDDIR»'
make all-recursive
make[2]: Entering directory '/«PKGBUILDDIR»'
Making all in src
make[3]: Entering directory '/«PKGBUILDDIR»/src'
/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o alignment-file.lo alignment-file.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -fPIC -DPIC -o .libs/alignment-file.o
alignment-file.c: In function 'read_line':
alignment-file.c:229:8: warning: implicit declaration of function 'size_of_string' [-Wimplicit-function-declaration]
if(size_of_string(sequence) > 0)
^
alignment-file.c:233:5: warning: implicit declaration of function 'concat_strings_created_with_malloc' [-Wimplicit-function-declaration]
concat_strings_created_with_malloc(sequence,current_line_buffer);
^
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c alignment-file.c -o alignment-file.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcf.lo vcf.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -fPIC -DPIC -o .libs/vcf.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c vcf.c -o vcf.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o phylib-of-snp-sites.lo phylib-of-snp-sites.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -fPIC -DPIC -o .libs/phylib-of-snp-sites.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c phylib-of-snp-sites.c -o phylib-of-snp-sites.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o snp-sites.lo snp-sites.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -fPIC -DPIC -o .libs/snp-sites.o
snp-sites.c: In function 'generate_snp_sites':
snp-sites.c:139:4: warning: implicit declaration of function 'create_fasta_of_snp_sites' [-Wimplicit-function-declaration]
create_fasta_of_snp_sites(multi_fasta_output_filename, number_of_snps, bases_for_snps, sequence_names, number_of_samples);
^
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c snp-sites.c -o snp-sites.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o fasta-of-snp-sites.lo fasta-of-snp-sites.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -fPIC -DPIC -o .libs/fasta-of-snp-sites.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c fasta-of-snp-sites.c -o fasta-of-snp-sites.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o parse-phylip.lo parse-phylip.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c parse-phylip.c -fPIC -DPIC -o .libs/parse-phylip.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c parse-phylip.c -o parse-phylip.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o string-cat.lo string-cat.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c string-cat.c -fPIC -DPIC -o .libs/string-cat.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c string-cat.c -o string-cat.o >/dev/null 2>&1
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -Wl,-z,relro -o libsnp-sites.la -rpath /usr/lib/arm-linux-gnueabihf alignment-file.lo vcf.lo phylib-of-snp-sites.lo snp-sites.lo fasta-of-snp-sites.lo parse-phylip.lo string-cat.lo
libtool: link: gcc -shared -fPIC -DPIC .libs/alignment-file.o .libs/vcf.o .libs/phylib-of-snp-sites.o .libs/snp-sites.o .libs/fasta-of-snp-sites.o .libs/parse-phylip.o .libs/string-cat.o -O2 -Wl,-z -Wl,relro -Wl,-soname -Wl,libsnp-sites.so.1 -o .libs/libsnp-sites.so.1.0.0
libtool: link: (cd ".libs" && rm -f "libsnp-sites.so.1" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so.1")
libtool: link: (cd ".libs" && rm -f "libsnp-sites.so" && ln -s "libsnp-sites.so.1.0.0" "libsnp-sites.so")
libtool: link: ar cru .libs/libsnp-sites.a alignment-file.o vcf.o phylib-of-snp-sites.o snp-sites.o fasta-of-snp-sites.o parse-phylip.o string-cat.o
ar: `u' modifier ignored since `D' is the default (see `U')
libtool: link: ranlib .libs/libsnp-sites.a
libtool: link: ( cd ".libs" && rm -f "libsnp-sites.la" && ln -s "../libsnp-sites.la" "libsnp-sites.la" )
gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.c
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -o snp-sites main.o -lm libsnp-sites.la -lz -lpthread -lrt
libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -o .libs/snp-sites main.o -lm ./.libs/libsnp-sites.so -lz -lpthread -lrt
make[3]: Leaving directory '/«PKGBUILDDIR»/src'
make[3]: Entering directory '/«PKGBUILDDIR»'
make[3]: Leaving directory '/«PKGBUILDDIR»'
make[2]: Leaving directory '/«PKGBUILDDIR»'
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_auto_test -a
make -j1 check
make[1]: Entering directory '/«PKGBUILDDIR»'
Making check in src
make[2]: Entering directory '/«PKGBUILDDIR»/src'
make run-all-tests
make[3]: Entering directory '/«PKGBUILDDIR»/src'
gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -I../tests -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o run_all_tests-check-snp-sites.o `test -f '../tests/check-snp-sites.c' || echo './'`../tests/check-snp-sites.c
gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -I../tests -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o run_all_tests-check-vcf.o `test -f '../tests/check-vcf.c' || echo './'`../tests/check-vcf.c
gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -I../tests -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o run_all_tests-helper-methods.o `test -f '../tests/helper-methods.c' || echo './'`../tests/helper-methods.c
gcc -DHAVE_CONFIG_H -I. -I.. -D_FORTIFY_SOURCE=2 -I../tests -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o run_all_tests-run-all-tests.o `test -f '../tests/run-all-tests.c' || echo './'`../tests/run-all-tests.c
/bin/bash ../libtool --tag=CC --mode=link gcc -I../tests -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -o run-all-tests run_all_tests-check-snp-sites.o run_all_tests-check-vcf.o run_all_tests-helper-methods.o run_all_tests-run-all-tests.o -lm -lcheck -lsubunit libsnp-sites.la -lz -lpthread -lrt
libtool: link: gcc -I../tests -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -o .libs/run-all-tests run_all_tests-check-snp-sites.o run_all_tests-check-vcf.o run_all_tests-helper-methods.o run_all_tests-run-all-tests.o -lm -lcheck -lsubunit ./.libs/libsnp-sites.so -lz -lpthread -lrt
make[3]: Leaving directory '/«PKGBUILDDIR»/src'
make check-TESTS
make[3]: Entering directory '/«PKGBUILDDIR»/src'
make[4]: Entering directory '/«PKGBUILDDIR»/src'
PASS: run-all-tests
============================================================================
Testsuite summary for snp-sites 1
============================================================================
# TOTAL: 1
# PASS: 1
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
make[4]: Leaving directory '/«PKGBUILDDIR»/src'
make[3]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»'
make[2]: Leaving directory '/«PKGBUILDDIR»'
make[1]: Leaving directory '/«PKGBUILDDIR»'
fakeroot debian/rules binary-arch
dh binary-arch --with autoreconf
dh_testroot -a
dh_prep -a
dh_auto_install -a
make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/«PKGBUILDDIR»'
Making install in src
make[2]: Entering directory '/«PKGBUILDDIR»/src'
make[3]: Entering directory '/«PKGBUILDDIR»/src'
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf'
/bin/bash ../libtool --mode=install /usr/bin/install -c libsnp-sites.la '/«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/libsnp-sites.so.1.0.0 /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.so.1.0.0
libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so.1 || { rm -f libsnp-sites.so.1 && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so.1; }; })
libtool: install: (cd /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libsnp-sites.so.1.0.0 libsnp-sites.so || { rm -f libsnp-sites.so && ln -s libsnp-sites.so.1.0.0 libsnp-sites.so; }; })
libtool: install: /usr/bin/install -c .libs/libsnp-sites.lai /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.la
libtool: install: /usr/bin/install -c .libs/libsnp-sites.a /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.a
libtool: install: chmod 644 /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.a
libtool: install: ranlib /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.a
libtool: install: warning: remember to run `libtool --finish /usr/lib/arm-linux-gnueabihf'
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/bin'
/bin/bash ../libtool --mode=install /usr/bin/install -c snp-sites '/«PKGBUILDDIR»/debian/tmp/usr/bin'
libtool: install: warning: `libsnp-sites.la' has not been installed in `/usr/lib/arm-linux-gnueabihf'
libtool: install: /usr/bin/install -c .libs/snp-sites /«PKGBUILDDIR»/debian/tmp/usr/bin/snp-sites
/bin/mkdir -p '/«PKGBUILDDIR»/debian/tmp/usr/include/snp-sites'
/usr/bin/install -c -m 644 alignment-file.h vcf.h phylib-of-snp-sites.h snp-sites.h fasta-of-snp-sites.h parse-phylip.h string-cat.h kseq.h '/«PKGBUILDDIR»/debian/tmp/usr/include/snp-sites'
make[3]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»'
make[3]: Entering directory '/«PKGBUILDDIR»'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/«PKGBUILDDIR»'
make[2]: Leaving directory '/«PKGBUILDDIR»'
make[1]: Leaving directory '/«PKGBUILDDIR»'
debian/rules override_dh_install
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_install
d-shlibmove --commit \
--multiarch \
--movedev "debian/tmp/usr/include/snp-sites/*.h" usr/include/snp-sites \
debian/tmp/usr/lib/*/libsnp-sites.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libsnp-sites1-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libsnp-sites1/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.a debian/libsnp-sites1-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.la debian/libsnp-sites1-dev/usr/lib/arm-linux-gnueabihf || true
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.so debian/libsnp-sites1-dev/usr/lib/arm-linux-gnueabihf
mv /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.so.1 debian/libsnp-sites1/usr/lib/arm-linux-gnueabihf
mv /«PKGBUILDDIR»/debian/tmp/usr/lib/arm-linux-gnueabihf/libsnp-sites.so.1.0.0 debian/libsnp-sites1/usr/lib/arm-linux-gnueabihf
PKGDEV=libsnp-sites1-dev
PKGSHL=libsnp-sites1
install -d -m 755 debian/libsnp-sites1-dev/usr/include/snp-sites
mv debian/tmp/usr/include/snp-sites/*.h debian/libsnp-sites1-dev/usr/include/snp-sites
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/«PKGBUILDDIR»'
mkdir -p /«PKGBUILDDIR»/debian/man
a2x --no-xmllint -f manpage /«PKGBUILDDIR»/snp-sites.txt
mv /«PKGBUILDDIR»/snp-sites.1 /«PKGBUILDDIR»/debian/man
dh_installman --
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_perl -a
dh_link -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/snp-sites/usr/bin/snp-sites was not linked against librt.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/snp-sites/usr/bin/snp-sites was not linked against libz.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/snp-sites/usr/bin/snp-sites was not linked against libm.so.6 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/snp-sites/usr/bin/snp-sites was not linked against libpthread.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: symbol gzread used by debian/libsnp-sites1/usr/lib/arm-linux-gnueabihf/libsnp-sites.so.1.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol gzclose used by debian/libsnp-sites1/usr/lib/arm-linux-gnueabihf/libsnp-sites.so.1.0.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol gzopen used by debian/libsnp-sites1/usr/lib/arm-linux-gnueabihf/libsnp-sites.so.1.0.0 found in none of the libraries
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: Depends field of package libsnp-sites1-dev: unknown substitution variable ${shlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'snp-sites' in '../snp-sites_2.0.2-1_armhf.deb'.
dpkg-deb: building package 'libsnp-sites1-dev' in '../libsnp-sites1-dev_2.0.2-1_armhf.deb'.
dpkg-deb: building package 'libsnp-sites1' in '../libsnp-sites1_2.0.2-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../snp-sites_2.0.2-1_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build snp-sites-2.0.2
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20150922-1134
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
snp-sites_2.0.2-1_armhf.changes:
────────────────────────────────
Format: 1.8
Date: Wed, 16 Sep 2015 15:31:27 +0200
Source: snp-sites
Binary: snp-sites libsnp-sites1 libsnp-sites1-dev
Architecture: armhf
Version: 2.0.2-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libsnp-sites1 - Shared libraries of the package snp-sites
libsnp-sites1-dev - Static libraries and header files for the package snp-sites
snp-sites - Binary code for the package snp-sites
Closes: 799164
Changes:
snp-sites (2.0.2-1) unstable; urgency=medium
.
* New upstream version
* Add missing lib subunit
Closes: #799164
Checksums-Sha1:
8ae6680d9a3432a5eb58eee0bab341fbf121e5e1 13646 libsnp-sites1-dev_2.0.2-1_armhf.deb
82e87d6c0f8e548a0189941474413a314fcace34 9576 libsnp-sites1_2.0.2-1_armhf.deb
904ddf6de1da795509c4998f8e4f3c446f77d7ca 6916 snp-sites_2.0.2-1_armhf.deb
Checksums-Sha256:
4906a8478f84c0b96f5408971f7d128a523f7a217b6811dcfb3d35b1edc0743b 13646 libsnp-sites1-dev_2.0.2-1_armhf.deb
42bba44b5e15c2990624ada3f844ad6cc513de2217c8541bbdd2e0c6c057a4e4 9576 libsnp-sites1_2.0.2-1_armhf.deb
64a863bcb9e7320e28304a2f3ee89fba7d619c6e1f60fb6b8db21549afdc4b81 6916 snp-sites_2.0.2-1_armhf.deb
Files:
464e0823edf4e6e6e82fbe6b9b9e8f8d 13646 libdevel optional libsnp-sites1-dev_2.0.2-1_armhf.deb
6e301f2d345b1de3c2eaf1c7f1b76f52 9576 libs optional libsnp-sites1_2.0.2-1_armhf.deb
63b259f8ff84c43b8b3410a683f6a655 6916 science optional snp-sites_2.0.2-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
libsnp-sites1-dev_2.0.2-1_armhf.deb
───────────────────────────────────
new debian package, version 2.0.
size 13646 bytes: control archive=1165 bytes.
954 bytes, 24 lines control
958 bytes, 13 lines md5sums
Package: libsnp-sites1-dev
Source: snp-sites
Version: 2.0.2-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 60
Depends: libsnp-sites1 (= 2.0.2-1)
Conflicts: libsnp-sites-dev
Provides: libsnp-sites-dev
Section: libdevel
Priority: optional
Homepage: https://github.com/sanger-pathogens/snp_sites
Description: Static libraries and header files for the package snp-sites
Snp-sites finds single nucleotide polymorphism (SNP) sites from
multi-fasta alignment input files (which might be compressed). Its
output can be in various widely used formats (Multi Fasta Alignment,
Vcf, phylip).
.
The software has been developed at the Wellcome Trust Sanger Institute.
.
This package contains the development files to include snp-sites
into your own code. The library enables Python developers to make
snp-sites function calls (Python bindings) through the Boost Python
Library.
drwxr-xr-x root/root 0 2015-09-22 11:34 ./
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/include/
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/include/snp-sites/
-rw-r--r-- root/root 1845 2015-09-22 11:34 ./usr/include/snp-sites/alignment-file.h
-rw-r--r-- root/root 1076 2015-09-22 11:34 ./usr/include/snp-sites/fasta-of-snp-sites.h
-rw-r--r-- root/root 8809 2015-09-22 11:34 ./usr/include/snp-sites/kseq.h
-rw-r--r-- root/root 1035 2015-09-22 11:34 ./usr/include/snp-sites/parse-phylip.h
-rw-r--r-- root/root 1080 2015-09-22 11:34 ./usr/include/snp-sites/phylib-of-snp-sites.h
-rw-r--r-- root/root 1527 2015-09-22 11:34 ./usr/include/snp-sites/snp-sites.h
-rw-r--r-- root/root 1021 2015-09-22 11:34 ./usr/include/snp-sites/string-cat.h
-rw-r--r-- root/root 1912 2015-09-22 11:34 ./usr/include/snp-sites/vcf.h
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/lib/
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 21168 2015-09-22 11:34 ./usr/lib/arm-linux-gnueabihf/libsnp-sites.a
-rw-r--r-- root/root 984 2015-09-22 11:34 ./usr/lib/arm-linux-gnueabihf/libsnp-sites.la
lrwxrwxrwx root/root 0 2015-09-22 11:34 ./usr/lib/arm-linux-gnueabihf/libsnp-sites.so -> libsnp-sites.so.1.0.0
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/share/
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/share/doc/libsnp-sites1-dev/
-rw-r--r-- root/root 552 2015-09-16 13:31 ./usr/share/doc/libsnp-sites1-dev/README.Debian
-rw-r--r-- root/root 314 2015-09-16 13:31 ./usr/share/doc/libsnp-sites1-dev/changelog.Debian.gz
-rw-r--r-- root/root 2178 2015-09-16 13:31 ./usr/share/doc/libsnp-sites1-dev/copyright
libsnp-sites1_2.0.2-1_armhf.deb
───────────────────────────────
new debian package, version 2.0.
size 9576 bytes: control archive=927 bytes.
711 bytes, 19 lines control
238 bytes, 3 lines md5sums
135 bytes, 7 lines * postinst #!/bin/sh
132 bytes, 7 lines * postrm #!/bin/sh
29 bytes, 1 lines shlibs
Package: libsnp-sites1
Source: snp-sites
Version: 2.0.2-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 34
Depends: libc6 (>= 2.4)
Section: libs
Priority: optional
Homepage: https://github.com/sanger-pathogens/snp_sites
Description: Shared libraries of the package snp-sites
Snp-sites finds single nucleotide polymorphism (SNP) sites from
multi-fasta alignment input files (which might be compressed). Its
output can be in various widely used formats (Multi Fasta Alignment,
Vcf, phylip).
.
The software has been developed at the Wellcome Trust Sanger Institute.
.
This package contains the dynamic library uses by snp-sites.
drwxr-xr-x root/root 0 2015-09-22 11:34 ./
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/lib/
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/lib/arm-linux-gnueabihf/
lrwxrwxrwx root/root 0 2015-09-22 11:34 ./usr/lib/arm-linux-gnueabihf/libsnp-sites.so.1 -> libsnp-sites.so.1.0.0
-rw-r--r-- root/root 17880 2015-09-22 11:34 ./usr/lib/arm-linux-gnueabihf/libsnp-sites.so.1.0.0
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/share/
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/share/doc/libsnp-sites1/
-rw-r--r-- root/root 314 2015-09-16 13:31 ./usr/share/doc/libsnp-sites1/changelog.Debian.gz
-rw-r--r-- root/root 2178 2015-09-16 13:31 ./usr/share/doc/libsnp-sites1/copyright
snp-sites_2.0.2-1_armhf.deb
───────────────────────────
new debian package, version 2.0.
size 6916 bytes: control archive=1088 bytes.
1159 bytes, 24 lines control
406 bytes, 6 lines md5sums
Package: snp-sites
Version: 2.0.2-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 24
Depends: libc6 (>= 2.4), libsnp-sites1, zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://github.com/sanger-pathogens/snp_sites
Description: Binary code for the package snp-sites
This program finds single nucleotide polymorphism (SNP) sites from
multi-fasta alignment input files (which might be compressed). Its
output can be in various widely used formats (Multi Fasta Alignment,
Vcf, phylip).
.
The software has been developed at the Wellcome Trust Sanger Institute.
.
A Single Nucleotide - polymorphism (SNP, pronounced snip; plural snips)
is a DNA sequence variation occurring when a Single Nucleotide — A, T, C
or G — in the genome (or other shared sequence) differs between members
of a biological species or paired chromosomes. For example, two
sequenced DNA fragments from different individuals, AAGCCTA to AAGCTTA,
contain a difference in a single nucleotide. In this case there are two
alleles. Almost all common SNPs have only two alleles.
drwxr-xr-x root/root 0 2015-09-22 11:34 ./
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/bin/
-rwxr-xr-x root/root 5532 2015-09-22 11:34 ./usr/bin/snp-sites
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/share/
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/share/doc/snp-sites/
-rw-r--r-- root/root 378 2015-09-16 13:31 ./usr/share/doc/snp-sites/README.Debian
-rw-r--r-- root/root 1214 2015-09-03 10:15 ./usr/share/doc/snp-sites/README.md
-rw-r--r-- root/root 314 2015-09-16 13:31 ./usr/share/doc/snp-sites/changelog.Debian.gz
-rw-r--r-- root/root 2178 2015-09-16 13:31 ./usr/share/doc/snp-sites/copyright
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/share/man/
drwxr-xr-x root/root 0 2015-09-22 11:34 ./usr/share/man/man1/
-rw-r--r-- root/root 1135 2015-09-22 11:34 ./usr/share/man/man1/snp-sites.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 5804
Build-Time: 135
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 327
Job: snp-sites_2.0.2-1
Machine Architecture: armhf
Package: snp-sites
Package-Time: 520
Source-Version: 2.0.2-1
Space: 5804
Status: successful
Version: 2.0.2-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20150922-1134
Build needed 00:08:40, 5804k disc space