Raspbian Package Auto-Building

Build log for seer (1.1.4-4+b1) on armhf

seer1.1.4-4+b1armhf → 2020-10-25 20:54:45

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02

+==============================================================================+
| seer 1.1.4-4+b1 (armhf)                      Sun, 25 Oct 2020 20:24:28 +0000 |
+==============================================================================+

Package: seer
Version: 1.1.4-4+b1
Source Version: 1.1.4-4
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-fe7a164c-88d0-425a-8af1-062cebcb4eb7' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.5 MB in 24s (1021 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'seer' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/seer.git
Please use:
git clone https://salsa.debian.org/med-team/seer.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 982 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main seer 1.1.4-4 (dsc) [2041 B]
Get:2 http://172.17.0.1/private bullseye-staging/main seer 1.1.4-4 (tar) [972 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main seer 1.1.4-4 (diff) [8232 B]
Fetched 982 kB in 0s (3529 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/seer-mf0Gbv/seer-1.1.4' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/seer-mf0Gbv' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-2GKQzI/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-2GKQzI/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-2GKQzI/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-2GKQzI/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-2GKQzI/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-2GKQzI/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-2GKQzI/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-2GKQzI/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2644 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  bsdextrautils krb5-locales libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 856 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-2GKQzI/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 856 B in 0s (23.2 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12766 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), libarmadillo-dev (>= 1:6.700.6+dfsg-1~), libdlib-dev, libhdf5-dev, libgzstream-dev, libboost-dev, libboost-program-options-dev
Filtered Build-Depends: debhelper-compat (= 13), libarmadillo-dev (>= 1:6.700.6+dfsg-1~), libdlib-dev, libhdf5-dev, libgzstream-dev, libboost-dev, libboost-program-options-dev
dpkg-deb: building package 'sbuild-build-depends-seer-dummy' in '/<<BUILDDIR>>/resolver-2GKQzI/apt_archive/sbuild-build-depends-seer-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-seer-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-2GKQzI/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-2GKQzI/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-2GKQzI/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-2GKQzI/apt_archive ./ Sources [556 B]
Get:5 copy:/<<BUILDDIR>>/resolver-2GKQzI/apt_archive ./ Packages [637 B]
Fetched 2526 B in 1s (3193 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install seer build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev debhelper dh-autoreconf
  dh-strip-nondeterminism dwz file gettext gettext-base groff-base
  hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl
  libarmadillo-dev libarmadillo10 libarpack2 libarpack2-dev libblas-dev
  libblas3 libboost-dev libboost-program-options-dev
  libboost-program-options1.71-dev libboost-program-options1.71.0
  libboost1.71-dev libcroco3 libdebhelper-perl libdlib-data libdlib-dev
  libdlib19 libelf1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
  libgzstream-dev libgzstream0 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev
  libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100
  libicu67 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev
  liblapack3 libmagic-mgc libmagic1 libpipeline1 libpng16-16 libsigsegv2
  libsub-override-perl libsuperlu-dev libsuperlu5 libsz2 libtool libuchardet0
  libxml2 m4 man-db po-debconf zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev groff libitpp-dev liblapack-doc
  libboost-doc libboost1.71-doc libboost-atomic1.71-dev
  libboost-chrono1.71-dev libboost-container1.71-dev libboost-context1.71-dev
  libboost-contract1.71-dev libboost-coroutine1.71-dev
  libboost-date-time1.71-dev libboost-exception1.71-dev libboost-fiber1.71-dev
  libboost-filesystem1.71-dev libboost-graph1.71-dev
  libboost-graph-parallel1.71-dev libboost-iostreams1.71-dev
  libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev
  libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev
  libboost-python1.71-dev libboost-random1.71-dev libboost-regex1.71-dev
  libboost-serialization1.71-dev libboost-stacktrace1.71-dev
  libboost-system1.71-dev libboost-test1.71-dev libboost-thread1.71-dev
  libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev
  libboost1.71-tools-dev libmpfrc++-dev libntl-dev libhdf5-doc libsuperlu-doc
  libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
  www-browser libmail-box-perl
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev debhelper dh-autoreconf
  dh-strip-nondeterminism dwz file gettext gettext-base groff-base
  hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl
  libarmadillo-dev libarmadillo10 libarpack2 libarpack2-dev libblas-dev
  libblas3 libboost-dev libboost-program-options-dev
  libboost-program-options1.71-dev libboost-program-options1.71.0
  libboost1.71-dev libcroco3 libdebhelper-perl libdlib-data libdlib-dev
  libdlib19 libelf1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
  libgzstream-dev libgzstream0 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev
  libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100
  libicu67 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev
  liblapack3 libmagic-mgc libmagic1 libpipeline1 libpng16-16 libsigsegv2
  libsub-override-perl libsuperlu-dev libsuperlu5 libsz2 libtool libuchardet0
  libxml2 m4 man-db po-debconf sbuild-build-depends-seer-dummy zlib1g-dev
0 upgraded, 69 newly installed, 0 to remove and 0 not upgraded.
Need to get 108 MB of archives.
After this operation, 381 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-2GKQzI/apt_archive ./ sbuild-build-depends-seer-dummy 0.invalid.0 [920 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.181-1 [161 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.1-2 [1174 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.1 [578 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf hdf5-helpers armhf 1.10.6+repack-2 [40.0 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libaec-dev armhf 1.0.4-1 [17.8 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.0-13+rpi1 [231 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libarpack2 armhf 3.7.0-3 [85.7 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libsuperlu5 armhf 5.2.2+dfsg1-2 [128 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libarmadillo10 armhf 1:10.1.0+dfsg-2 [95.8 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libarpack2-dev armhf 3.7.0-3 [96.2 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103-1 armhf 1.10.6+repack-2 [1184 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-fortran-102 armhf 1.10.6+repack-2 [93.0 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-100 armhf 1.10.6+repack-2 [78.1 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.6+repack-2 [49.8 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.6+repack-2 [128 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.6+repack-2 [36.9 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [121 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.5-1.1 [241 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:2.0.5-1.1 [66.0 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-dev armhf 1.10.6+repack-2 [2167 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libsuperlu-dev armhf 5.2.2+dfsg1-2 [21.4 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libarmadillo-dev armhf 1:10.1.0+dfsg-2 [386 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libboost1.71-dev armhf 1.71.0-7 [9098 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.71.0.3+b3 [4620 B]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.71.0 armhf 1.71.0-7 [337 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options1.71-dev armhf 1.71.0-7 [392 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libboost-program-options-dev armhf 1.71.0.3+b3 [4412 B]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libdlib-data all 19.10-3 [63.4 MB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libdlib19 armhf 19.10-3 [3717 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libdlib-dev armhf 19.10-3 [1694 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libgzstream0 armhf 1.5+dfsg-5 [6268 B]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libgzstream-dev armhf 1.5+dfsg-5 [6728 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 108 MB in 8s (12.8 MB/s)
Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 12766 files and directories currently installed.)
Preparing to unpack .../00-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../01-groff-base_1.22.4-5_armhf.deb ...
Unpacking groff-base (1.22.4-5) ...
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Preparing to unpack .../02-libpipeline1_1.5.3-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.3-1) ...
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Preparing to unpack .../03-man-db_2.9.3-2_armhf.deb ...
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Preparing to unpack .../04-libmagic-mgc_1%3a5.38-5_armhf.deb ...
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Preparing to unpack .../05-libmagic1_1%3a5.38-5_armhf.deb ...
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Preparing to unpack .../08-libsigsegv2_2.12-2_armhf.deb ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
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Processing triggers for libc-bin (2.31-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.1-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-13+rpi1 gcc-10_10.2.0-13+rpi1 libc6-dev_2.31-4+rpi1 libstdc++-10-dev_10.2.0-13+rpi1 libstdc++6_10.2.0-13+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.10 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc1-2 binutils_2.35.1-2+rpi1 binutils-arm-linux-gnueabihf_2.35.1-2+rpi1 binutils-common_2.35.1-2+rpi1 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-13+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0-1 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-13+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-13+rpi1 gcc-10-base_10.2.0-13+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-6+rpi1+b1 gcc-8-base_8.4.0-4+rpi1+b1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hdf5-helpers_1.10.6+repack-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 krb5-locales_1.17-10 libacl1_2.2.53-8 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libarmadillo-dev_1:10.1.0+dfsg-2 libarmadillo10_1:10.1.0+dfsg-2 libarpack2_3.7.0-3 libarpack2-dev_3.7.0-3 libasan6_10.2.0-13+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-13+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libbinutils_2.35.1-2+rpi1 libblas-dev_3.9.0-3 libblas3_3.9.0-3 libblkid1_2.36-3 libboost-dev_1.71.0.3+b3 libboost-iostreams1.71.0_1.71.0-7 libboost-program-options-dev_1.71.0.3+b3 libboost-program-options1.71-dev_1.71.0-7 libboost-program-options1.71.0_1.71.0-7 libboost1.71-dev_1.71.0-7 libbz2-1.0_1.0.8-4 libc-bin_2.31-4+rpi1 libc-dev-bin_2.31-4+rpi1 libc6_2.31-4+rpi1 libc6-dev_2.31-4+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_10.2.0-13+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2+rpi1 libctf0_2.35.1-2+rpi1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.254 libdebhelper-perl_13.2.1 libdlib-data_19.10-3 libdlib-dev_19.10-3 libdlib19_19.10-3 libdpkg-perl_1.20.5+rpi1 libelf1_0.181-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libfdisk1_2.36-3 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-13+rpi1 libgcc-s1_10.2.0-13+rpi1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran5_10.2.0-13+rpi1 libglib2.0-0_2.66.1-2 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-13+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10+b3 libgzstream-dev_1.5+dfsg-5 libgzstream0_1.5+dfsg-5 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libjpeg-dev_1:2.0.5-1.1 libjpeg62-turbo_1:2.0.5-1.1 libjpeg62-turbo-dev_1:2.0.5-1.1 libk5crypto3_1.17-10+b3 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10+b3 libkrb5support0_1.17-10+b3 libksba8_1.4.0-2 liblapack-dev_3.9.0-3 liblapack3_3.9.0-3 libldap-2.4-2_2.4.53+dfsg-1+rpi1 libldap-common_2.4.53+dfsg-1+rpi1 liblocale-gettext-perl_1.07-4 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.21-2 libpam-cap_1:2.44-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.4-1+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.4-2 libsigsegv2_2.12-2 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssl1.1_1.1.1g-1 libstdc++-10-dev_10.2.0-13+rpi1 libstdc++6_10.2.0-13+rpi1 libsub-override-perl_0.09-2 libsuperlu-dev_5.2.2+dfsg1-2 libsuperlu5_5.2.2+dfsg1-2 libsystemd0_246.4-1+rpi1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-13+rpi1 libuchardet0_0.0.7-1 libudev1_246.4-1+rpi1 libunistring2_0.9.10-4 libuuid1_2.36-3 libxapian30_1.4.17-1 libxml2_2.9.10+dfsg-6.1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 netbase_6.2 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-seer-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020d-1 util-linux_2.36-3 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.xog7ZD47/trustedkeys.kbx': General error
gpgv: Signature made Wed Sep 16 12:55:22 2020 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./seer_1.1.4-4.dsc
dpkg-source: info: extracting seer in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking seer_1.1.4.orig.tar.gz
dpkg-source: info: unpacking seer_1.1.4-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_lib_location.patch
dpkg-source: info: applying hardening.patch

Check disc space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 1.1.4-4+b1

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-fe7a164c-88d0-425a-8af1-062cebcb4eb7
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package seer
dpkg-buildpackage: info: source version 1.1.4-4+b1
dpkg-buildpackage: info: source distribution bullseye-staging
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean
   dh_auto_clean
	make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd src && make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -f *.o ~* seer kmds map_back combineKmers filter_seer
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
cd test && make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/test'
rm -f *.o ~* tests_passed
make[2]: Leaving directory '/<<PKGBUILDDIR>>/test'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- LDFLAGS+=-L/usr/lib/arm-linux-gnueabihf/hdf5/serial
	make -j4 "INSTALL=install --strip-program=true" LDFLAGS\+=-L/usr/lib/arm-linux-gnueabihf/hdf5/serial
make[2]: Entering directory '/<<PKGBUILDDIR>>'
cd src && make all
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o sample.o sample.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o significant_kmer.o significant_kmer.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o kmer.o kmer.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o covar.o covar.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o seerCommon.o seerCommon.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o seerErr.o seerErr.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o seerIO.o seerIO.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o seerBasicFilter.o seerBasicFilter.cpp
seerCommon.cpp: In function 'arma::vec dlib_to_arma(const column_vector&)':
seerCommon.cpp:174:31: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'long int' [-Wsign-compare]
  174 |    for (unsigned int i = 0; i < dlib_vec.nr(); ++i)
      |                             ~~^~~~~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o seerMain.o seerMain.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o seerCmdLine.o seerCmdLine.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o seerStats.o seerStats.cpp
In file included from /usr/include/c++/10/bits/stl_algobase.h:71,
                 from /usr/include/c++/10/bits/char_traits.h:39,
                 from /usr/include/c++/10/ios:40,
                 from /usr/include/c++/10/ostream:38,
                 from /usr/include/c++/10/iostream:39,
                 from seercommon.hpp:10,
                 from seerIO.cpp:12:
/usr/include/c++/10/bits/predefined_ops.h: In function 'bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >; _Iterator2 = __gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >; _Compare = bool (*)(Sample, Sample)]':
/usr/include/c++/10/bits/predefined_ops.h:155:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
  155 |         operator()(_Iterator1 __it1, _Iterator2 __it2)
      |         ^~~~~~~~
/usr/include/c++/10/bits/predefined_ops.h:155:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
In file included from /usr/include/c++/10/vector:72,
                 from seercommon.hpp:18,
                 from seerIO.cpp:12:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Sample&}; _Tp = Sample; _Alloc = std::allocator<Sample>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Sample>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
                 from seercommon.hpp:15,
                 from seerIO.cpp:12:
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(Sample, Sample)>]':
/usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
 1819 |     __unguarded_linear_insert(_RandomAccessIterator __last,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Sample, Sample)>]':
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
 1839 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
In file included from /usr/include/c++/10/vector:72,
                 from seercommon.hpp:18,
                 from seerIO.cpp:12:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long int, std::allocator<long long int> >::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
                 from seercommon.hpp:18,
                 from seerIO.cpp:12:
/usr/include/c++/10/bits/stl_vector.h: In function 'static bool arma::diskio::save_hdf5_binary(const arma::Mat<eT>&, const arma::hdf5_name&, std::string&) [with eT = double]':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int, std::allocator<long long int> > >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
                 from /usr/include/c++/10/algorithm:62,
                 from seercommon.hpp:15,
                 from seerIO.cpp:12:
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >; _Distance = int; _Tp = Sample; _Compare = __gnu_cxx::__ops::_Iter_comp_val<bool (*)(Sample, Sample)>]':
/usr/include/c++/10/bits/stl_heap.h:134:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
  134 |     __push_heap(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >; _Distance = int; _Tp = Sample; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Sample, Sample)>]':
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
  223 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Sample, Sample)>]':
/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
  339 |     __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
      |     ^~~~~~~~~~~
/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
In file included from /usr/include/c++/10/algorithm:62,
                 from seercommon.hpp:15,
                 from seerIO.cpp:12:
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(Sample, Sample)>]':
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
 1945 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:82:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
   82 |       if (__comp(__a, __b))
      |           ~~~~~~^~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:84:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
   84 |    if (__comp(__b, __c))
      |        ~~~~~~^~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:86:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
   86 |    else if (__comp(__a, __c))
      |             ~~~~~~^~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:91:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
   91 |       else if (__comp(__a, __c))
      |                ~~~~~~^~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:93:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
   93 |       else if (__comp(__b, __c))
      |                ~~~~~~^~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
 1959 |    std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1666:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
 1666 |       std::__make_heap(__first, __middle, __comp);
      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
                 from seercommon.hpp:18,
                 from seerIO.cpp:12:
/usr/include/c++/10/bits/stl_vector.h: In function 'void readPheno(const string&, std::vector<Sample>&, std::unordered_map<std::__cxx11::basic_string<char>, int>&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
                 from seercommon.hpp:15,
                 from seerIO.cpp:12:
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
 1974 |    std::__introsort_loop(__first, __last,
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1975 |     std::__lg(__last - __first) * 2,
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1976 |     __comp);
      |     ~~~~~~~              
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
 1886 |    std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |    ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Sample*, std::vector<Sample> >' changed in GCC 7.1
 1891 |  std::__insertion_sort(__first, __last, __comp);
      |  ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
                 from seercommon.hpp:18,
                 from linkFunction.hpp:6,
                 from seer.hpp:10,
                 from seerMain.cpp:8:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Kmer&}; _Tp = Kmer; _Alloc = std::allocator<Kmer>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Kmer>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
                 from seercommon.hpp:18,
                 from linkFunction.hpp:6,
                 from seer.hpp:10,
                 from seerMain.cpp:8:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Kmer; _Alloc = std::allocator<Kmer>]':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Kmer*, std::vector<Kmer> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function 'int main(int, char**)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Kmer*, std::vector<Kmer> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o seerContinuousAssoc.o seerContinuousAssoc.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o seerBinaryAssoc.o seerBinaryAssoc.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o logitFunction.o logitFunction.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o linearFunction.o linearFunction.cpp
In file included from /usr/include/c++/10/vector:72,
                 from seercommon.hpp:18,
                 from linkFunction.hpp:6,
                 from seer.hpp:10,
                 from seerContinuousAssoc.cpp:8:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
                 from seercommon.hpp:18,
                 from linkFunction.hpp:6,
                 from seer.hpp:10,
                 from seerContinuousAssoc.cpp:8:
/usr/include/c++/10/bits/stl_vector.h: In function 'void doLinear(Kmer&, const vec&, const mat&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o kmdsMain.o kmdsMain.cpp
In file included from /usr/include/c++/10/vector:72,
                 from seercommon.hpp:18,
                 from linkFunction.hpp:6,
                 from seer.hpp:10,
                 from seerBinaryAssoc.cpp:8:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o kmdsStruct.o kmdsStruct.cpp
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const arma::Col<double>&}; _Tp = arma::Col<double>; _Alloc = std::allocator<arma::Col<double> >]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<arma::Col<double> >::iterator' changed in GCC 7.1
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o kmdsCmdLine.o kmdsCmdLine.cpp
In file included from /usr/include/c++/10/vector:67,
                 from seercommon.hpp:18,
                 from linkFunction.hpp:6,
                 from seer.hpp:10,
                 from seerBinaryAssoc.cpp:8:
/usr/include/c++/10/bits/stl_vector.h: In function 'void newtonRaphson(Kmer&, const vec&, const mat&, bool)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<arma::Col<double>*, std::vector<arma::Col<double> > >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<arma::Col<double>*, std::vector<arma::Col<double> > >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In function 'void doLogit(Kmer&, const vec&, const mat&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o fasta.o fasta.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o mapMain.o mapMain.cpp
In file included from /usr/include/c++/10/vector:72,
                 from seercommon.hpp:18,
                 from kmds.hpp:9,
                 from kmdsStruct.cpp:8:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const DistanceElement&}; _Tp = DistanceElement; _Alloc = std::allocator<DistanceElement>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<DistanceElement>::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<DistanceElement>::iterator' changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
                 from seercommon.hpp:18,
                 from kmds.hpp:9,
                 from kmdsStruct.cpp:8:
/usr/include/c++/10/bits/stl_vector.h: In function 'arma::mat dissimiliarityMatrix(const mat&, unsigned int)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<DistanceElement*, std::vector<DistanceElement> >' changed in GCC 7.1
 1198 |    _M_realloc_insert(end(), __x);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o mapCmdLine.o mapCmdLine.cpp
In file included from /usr/include/c++/10/vector:72,
                 from seercommon.hpp:18,
                 from kmds.hpp:9,
                 from kmdsMain.cpp:8:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {arma::Col<double>}; _Tp = arma::Col<double>; _Alloc = std::allocator<arma::Col<double> >]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<arma::Col<double> >::iterator' changed in GCC 7.1
  426 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o combineInit.o combineInit.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o combineCmdLine.o combineCmdLine.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o combineKmers.o combineKmers.cpp
/usr/include/c++/10/bits/vector.tcc: In function 'int main(int, char**)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<arma::Col<double>*, std::vector<arma::Col<double> > >' changed in GCC 7.1
  121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o filter_seer.o filter_seer.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1  -c -o filterCmdLine.o filterCmdLine.cpp
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial  sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerIO.o seerBasicFilter.o seerMain.o seerCmdLine.o seerStats.o seerContinuousAssoc.o seerBinaryAssoc.o logitFunction.o linearFunction.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -o seer
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial  sample.o significant_kmer.o kmer.o covar.o seerCommon.o seerErr.o seerIO.o seerBasicFilter.o kmdsMain.o kmdsStruct.o kmdsCmdLine.o -lhdf5 -lgzstream -lz -larmadillo -lboost_program_options -llapack -lblas -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -o kmds
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial  fasta.o significant_kmer.o mapMain.o mapCmdLine.o -lboost_program_options -lpthread -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -o map_back
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial  combineInit.o combineCmdLine.o combineKmers.o -lgzstream -lz -lboost_program_options -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -o combineKmers
In file included from /usr/include/c++/10/list:63,
                 from filter_seer.hpp:11,
                 from filter_seer.cpp:7:
/usr/include/c++/10/bits/stl_list.h: In member function 'void std::__cxx11::list<_Tp, _Alloc>::_M_insert(std::__cxx11::list<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Significant_kmer&}; _Tp = Significant_kmer; _Alloc = std::allocator<Significant_kmer>]':
/usr/include/c++/10/bits/stl_list.h:1909:8: note: parameter passing for argument of type 'std::__cxx11::list<Significant_kmer>::iterator' changed in GCC 7.1
 1909 |        _M_insert(iterator __position, _Args&&... __args)
      |        ^~~~~~~~~
/usr/include/c++/10/bits/stl_list.h: In function 'int main(int, char**)':
/usr/include/c++/10/bits/stl_list.h:1212:24: note: parameter passing for argument of type 'std::_List_iterator<Significant_kmer>' changed in GCC 7.1
 1212 |       { this->_M_insert(end(), __x); }
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O3 -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -D DLIB_NO_GUI_SUPPORT=1 -D DLIB_USE_BLAS=1 -D DLIB_USE_LAPACK=1 -DARMA_USE_HDF5=1 -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial  significant_kmer.o filter_seer.o filterCmdLine.o -lboost_program_options -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -o filter_seer
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
if dh_auto_test ; then echo Test passed ; else echo '****************************** TEST FAILED.  Please contact upstream *******************************' ; fi
	make -j4 test
make[2]: Entering directory '/<<PKGBUILDDIR>>'
cd src && make all
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
cd test && make test
make[3]: Entering directory '/<<PKGBUILDDIR>>/test'
./run_test.pl && touch tests_passed
PASSED test 1, basic filters
PASSED test 2, binary phenotype assocation
PASSED test 3, print output
PASSED test 4, continuous phenotype assocation
PASSED test 5, assocation with population structure
PASSED test 6, assocation with covariates
PASSED test 7, filter output
PASSED test 8, map k-mers
make[3]: Leaving directory '/<<PKGBUILDDIR>>/test'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
Test passed
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a
   dh_prep -a
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install -- PREFIX=/<<PKGBUILDDIR>>/debian/seer/usr
	make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/seer AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=/<<PKGBUILDDIR>>/debian/seer/usr
make[2]: Entering directory '/<<PKGBUILDDIR>>'
cd src && make all
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
cd src && make install
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
install -d /<<PKGBUILDDIR>>/debian/seer/usr/bin
install seer kmds map_back combineKmers filter_seer /<<PKGBUILDDIR>>/debian/seer/usr/bin
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
for pl in scripts/*.pl ; do \
    plbase=`basename ${pl} .pl` ; \
    sed "s+Usage: ./${plbase}.pl+Usage: ${plbase}+" ${pl} > /<<PKGBUILDDIR>>/debian/seer/usr/bin/${plbase} ; \
done
# Fix broken usage hint:
sed -i "s+Usage: ./hits_to_matrix.pl+Usage: reformat_output+" /<<PKGBUILDDIR>>/debian/seer/usr/bin/reformat_output
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installexamples -a
   dh_installman -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
find debian -name Makefile -exec chmod -x \{\} \;
find debian -name "*.fa" -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_missing -a
   dh_dwz -a -a
   dh_strip -a -a
   dh_makeshlibs -a -a
   dh_shlibdeps -a -a
dpkg-shlibdeps: warning: debian/seer/usr/bin/combineKmers contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/seer/usr/bin/seer contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/seer/usr/bin/kmds contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/seer/usr/bin/map_back contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/seer/usr/bin/filter_seer contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/seer/usr/bin/combineKmers debian/seer/usr/bin/seer debian/seer/usr/bin/kmds debian/seer/usr/bin/map_back debian/seer/usr/bin/filter_seer were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/seer/usr/bin/combineKmers was not linked against libz.so.1 (it uses none of the library's symbols)
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'seer-dbgsym' in '../seer-dbgsym_1.1.4-4+b1_armhf.deb'.
dpkg-deb: building package 'seer' in '../seer_1.1.4-4+b1_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../seer_1.1.4-4+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-10-25T20:54:31Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


seer_1.1.4-4+b1_armhf.changes:
------------------------------

Format: 1.8
Date: Tue, 15 Sep 2020 06:05:45 +0200
Source: seer (1.1.4-4)
Binary: seer seer-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 1.1.4-4+b1
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
 seer       - genomic sequence element (kmer) enrichment analysis
Changes:
 seer (1.1.4-4+b1) bullseye-staging; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for armhf; no source changes.
   * rebuild due to debcheck failure
Checksums-Sha1:
 b637c0795609435f829713ee66cd183840741d35 8674464 seer-dbgsym_1.1.4-4+b1_armhf.deb
 ea0a266c6f77fb1d371ba169bc4ceea728c32f4d 6473 seer_1.1.4-4+b1_armhf.buildinfo
 fafa2cd71a23dc65aabfedb0412038f70b22d602 1082188 seer_1.1.4-4+b1_armhf.deb
Checksums-Sha256:
 903cd5fc76efe19abe3ca91aac9f229f5315cdfaaeff133770e16c87372ec634 8674464 seer-dbgsym_1.1.4-4+b1_armhf.deb
 cd60052d27dcf966be8ed4928565f8ac454a9230b007b7dec205d836ec3ca24f 6473 seer_1.1.4-4+b1_armhf.buildinfo
 4490df2ec09112514b2c83434e0ce3881a259cfd5cce6bbd278823fb5c66b310 1082188 seer_1.1.4-4+b1_armhf.deb
Files:
 ecdd8b2e0881c567126a8e623bd197fb 8674464 debug optional seer-dbgsym_1.1.4-4+b1_armhf.deb
 3540563e79fe75b27c18b04c2720ffde 6473 science optional seer_1.1.4-4+b1_armhf.buildinfo
 232217c1a2f8b1a2001750db161822ea 1082188 science optional seer_1.1.4-4+b1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


seer-dbgsym_1.1.4-4+b1_armhf.deb
--------------------------------

 new Debian package, version 2.0.
 size 8674464 bytes: control archive=812 bytes.
     539 bytes,    12 lines      control              
     614 bytes,     6 lines      md5sums              
 Package: seer-dbgsym
 Source: seer (1.1.4-4)
 Version: 1.1.4-4+b1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 9076
 Depends: seer (= 1.1.4-4+b1)
 Section: debug
 Priority: optional
 Description: debug symbols for seer
 Build-Ids: 1adb70f687d8f8a4cb16dbcaaf1d32d36eaffbd8 229a2414d547394a98204d959352112e6163ef64 382277319e27c269083557634b4e41d2578ce695 9ca202a5e539a89ae65c538bc4e4ebdc4e8268a6 a48203a4f5805fcf931018cbe4bb29fe9a08ef72

drwxr-xr-x root/root         0 2020-09-15 04:05 ./
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/lib/
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/lib/debug/.build-id/1a/
-rw-r--r-- root/root   3393908 2020-09-15 04:05 ./usr/lib/debug/.build-id/1a/db70f687d8f8a4cb16dbcaaf1d32d36eaffbd8.debug
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/lib/debug/.build-id/22/
-rw-r--r-- root/root    543156 2020-09-15 04:05 ./usr/lib/debug/.build-id/22/9a2414d547394a98204d959352112e6163ef64.debug
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/lib/debug/.build-id/38/
-rw-r--r-- root/root   1088084 2020-09-15 04:05 ./usr/lib/debug/.build-id/38/2277319e27c269083557634b4e41d2578ce695.debug
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/lib/debug/.build-id/9c/
-rw-r--r-- root/root   2796080 2020-09-15 04:05 ./usr/lib/debug/.build-id/9c/a202a5e539a89ae65c538bc4e4ebdc4e8268a6.debug
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/lib/debug/.build-id/a4/
-rw-r--r-- root/root    381816 2020-09-15 04:05 ./usr/lib/debug/.build-id/a4/8203a4f5805fcf931018cbe4bb29fe9a08ef72.debug
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root   1072124 2020-09-15 04:05 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/seer.debug
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/share/
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-09-15 04:05 ./usr/share/doc/seer-dbgsym -> seer


seer_1.1.4-4+b1_armhf.deb
-------------------------

 new Debian package, version 2.0.
 size 1082188 bytes: control archive=2696 bytes.
    1446 bytes,    25 lines      control              
    4327 bytes,    62 lines      md5sums              
 Package: seer
 Source: seer (1.1.4-4)
 Version: 1.1.4-4+b1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 4529
 Depends: libarmadillo10 (>= 1:10.1.0+dfsg), libblas3 | libblas.so.3, libboost-program-options1.71.0, libc6 (>= 2.29), libgcc-s1 (>= 3.5), libgzstream0 (>= 1.5+dfsg), libhdf5-103-1, libstdc++6 (>= 7), zlib1g (>= 1:1.1.4), libtext-csv-perl
 Suggests: fsm-lite
 Section: science
 Priority: optional
 Homepage: https://github.com/johnlees/seer
 Description: genomic sequence element (kmer) enrichment analysis
  Bacterial genomes vary extensively in terms of both gene content and
  gene sequence - this plasticity hampers the use of traditional SNP-based
  methods for identifying all genetic associations with phenotypic
  variation. SEER provides a computationally scalable and widely
  applicable statistical method for the identification of sequence
  elements that are significantly enriched in a phenotype of interest.
  SEER is applicable to even tens of thousands of genomes by counting variable-
  length k-mers using a distributed string-mining algorithm. Robust
  options are provided for association analysis that also correct for the
  clonal population structure of bacteria. Using large collections of
  genomes of the major human pathogen Streptococcus pneumoniae, SEER
  identifies relevant previously characterised resistance determinants for
  several antibiotics.

drwxr-xr-x root/root         0 2020-09-15 04:05 ./
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/bin/
-rwxr-xr-x root/root      4597 2020-09-15 04:05 ./usr/bin/R_mds
-rwxr-xr-x root/root      3794 2020-09-15 04:05 ./usr/bin/blast_top_hits
-rwxr-xr-x root/root      2152 2020-09-15 04:05 ./usr/bin/blastn_to_phandango
-rwxr-xr-x root/root    108172 2020-09-15 04:05 ./usr/bin/combineKmers
-rwxr-xr-x root/root     71308 2020-09-15 04:05 ./usr/bin/filter_seer
-rwxr-xr-x root/root      1869 2020-09-15 04:05 ./usr/bin/hits_to_fastq
-rwxr-xr-x root/root    432268 2020-09-15 04:05 ./usr/bin/kmds
-rwxr-xr-x root/root    185996 2020-09-15 04:05 ./usr/bin/map_back
-rwxr-xr-x root/root      3200 2020-09-15 04:05 ./usr/bin/mapping_to_phandango
-rwxr-xr-x root/root      1208 2020-09-15 04:05 ./usr/bin/mash2matrix
-rwxr-xr-x root/root      2295 2020-09-15 04:05 ./usr/bin/reformat_output
-rwxr-xr-x root/root    608428 2020-09-15 04:05 ./usr/bin/seer
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/share/
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/share/doc/seer/
-rw-r--r-- root/root       684 2020-09-15 04:05 ./usr/share/doc/seer/README.Debian
-rw-r--r-- root/root       328 2020-09-15 04:05 ./usr/share/doc/seer/README.source
-rw-r--r-- root/root       278 2020-09-15 04:05 ./usr/share/doc/seer/README.test
-rw-r--r-- root/root       219 2020-09-15 04:05 ./usr/share/doc/seer/changelog.Debian.armhf.gz
-rw-r--r-- root/root      1013 2020-09-15 04:05 ./usr/share/doc/seer/changelog.Debian.gz
-rw-r--r-- root/root      1009 2020-09-15 04:05 ./usr/share/doc/seer/copyright
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/share/doc/seer/examples/
-rw-r--r-- root/root   2168438 2017-06-20 09:43 ./usr/share/doc/seer/examples/6259_5_16.fa
-rw-r--r-- root/root       121 2017-06-20 09:43 ./usr/share/doc/seer/examples/Makefile
-rw-r--r-- root/root    196442 2017-06-20 09:43 ./usr/share/doc/seer/examples/all_structure_new
-rw-r--r-- root/root     29617 2017-06-20 09:43 ./usr/share/doc/seer/examples/all_structure_new.samples
-rw-r--r-- root/root        23 2017-06-20 09:43 ./usr/share/doc/seer/examples/assembly_locations.txt
-rw-r--r-- root/root      3011 2017-06-20 09:43 ./usr/share/doc/seer/examples/covariates.txt
-rw-r--r-- root/root     65372 2017-06-20 09:43 ./usr/share/doc/seer/examples/example.pheno
-rw-r--r-- root/root     63448 2020-09-15 04:05 ./usr/share/doc/seer/examples/example_kmers.gz
-rwxr-xr-x root/root      6542 2017-06-20 09:43 ./usr/share/doc/seer/examples/example_wrapper.py
-rw-r--r-- root/root     18732 2017-06-20 09:43 ./usr/share/doc/seer/examples/filter_in.txt
-rwxr-xr-x root/root      1115 2017-06-20 09:43 ./usr/share/doc/seer/examples/generate_test.pl
-rw-r--r-- root/root       233 2017-06-20 09:43 ./usr/share/doc/seer/examples/map_in.txt
-rwxr-xr-x root/root      2031 2017-06-20 09:43 ./usr/share/doc/seer/examples/run_test.pl
-rw-r--r-- root/root      4530 2017-06-20 09:43 ./usr/share/doc/seer/examples/subset.cont.pheno
-rw-r--r-- root/root      4238 2017-06-20 09:43 ./usr/share/doc/seer/examples/subset.pheno
-rw-r--r-- root/root       168 2017-06-20 09:43 ./usr/share/doc/seer/examples/test1.e.txt
-rw-r--r-- root/root        63 2017-06-20 09:43 ./usr/share/doc/seer/examples/test1.o.txt
-rw-r--r-- root/root       171 2017-06-20 09:43 ./usr/share/doc/seer/examples/test2.e.txt
-rw-r--r-- root/root     18732 2017-06-20 09:43 ./usr/share/doc/seer/examples/test2.o.txt
-rw-r--r-- root/root       170 2017-06-20 09:43 ./usr/share/doc/seer/examples/test3.e.txt
-rw-r--r-- root/root    496392 2017-06-20 09:43 ./usr/share/doc/seer/examples/test3.o.txt
-rw-r--r-- root/root       174 2017-06-20 09:43 ./usr/share/doc/seer/examples/test4.e.txt
-rw-r--r-- root/root      9798 2017-06-20 09:43 ./usr/share/doc/seer/examples/test4.o.txt
-rw-r--r-- root/root       171 2017-06-20 09:43 ./usr/share/doc/seer/examples/test5.e.txt
-rw-r--r-- root/root     24941 2017-06-20 09:43 ./usr/share/doc/seer/examples/test5.o.txt
-rw-r--r-- root/root       171 2017-06-20 09:43 ./usr/share/doc/seer/examples/test6.e.txt
-rw-r--r-- root/root     24672 2017-06-20 09:43 ./usr/share/doc/seer/examples/test6.o.txt
-rw-r--r-- root/root        55 2017-06-20 09:43 ./usr/share/doc/seer/examples/test7.e.txt
-rw-r--r-- root/root     15565 2017-06-20 09:43 ./usr/share/doc/seer/examples/test7.o.txt
-rw-r--r-- root/root       121 2017-06-20 09:43 ./usr/share/doc/seer/examples/test8.e.txt
-rw-r--r-- root/root        62 2017-06-20 09:43 ./usr/share/doc/seer/examples/test8.o.txt
-rw-r--r-- root/root         0 2020-09-15 04:05 ./usr/share/doc/seer/examples/tests_passed
-rw-r--r-- root/root      1803 2020-09-15 04:05 ./usr/share/doc/seer/run-unit-test
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/share/man/
drwxr-xr-x root/root         0 2020-09-15 04:05 ./usr/share/man/man1/
-rw-r--r-- root/root       506 2020-09-15 04:05 ./usr/share/man/man1/R_mds.1.gz
-rw-r--r-- root/root       501 2020-09-15 04:05 ./usr/share/man/man1/blast_top_hits.1.gz
-rw-r--r-- root/root       461 2020-09-15 04:05 ./usr/share/man/man1/combineKmers.1.gz
-rw-r--r-- root/root       543 2020-09-15 04:05 ./usr/share/man/man1/filter_seer.1.gz
-rw-r--r-- root/root       408 2020-09-15 04:05 ./usr/share/man/man1/hits_to_fastq.1.gz
-rw-r--r-- root/root       906 2020-09-15 04:05 ./usr/share/man/man1/kmds.1.gz
-rw-r--r-- root/root       458 2020-09-15 04:05 ./usr/share/man/man1/map_back.1.gz
-rw-r--r-- root/root       432 2020-09-15 04:05 ./usr/share/man/man1/mapping_to_phandango.1.gz
-rw-r--r-- root/root       466 2020-09-15 04:05 ./usr/share/man/man1/mash2matrix.1.gz
-rw-r--r-- root/root       422 2020-09-15 04:05 ./usr/share/man/man1/reformat_output.1.gz
-rw-r--r-- root/root       995 2020-09-15 04:05 ./usr/share/man/man1/seer.1.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 113568
Build-Time: 1008
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 738
Job: seer_1.1.4-4
Machine Architecture: armhf
Package: seer
Package-Time: 1803
Source-Version: 1.1.4-4
Space: 113568
Status: successful
Version: 1.1.4-4+b1
--------------------------------------------------------------------------------
Finished at 2020-10-25T20:54:31Z
Build needed 00:30:03, 113568k disc space