rdkit →
201603.5+dfsg-1 →
armhf → 2017-12-23 10:17:25
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| rdkit 201603.5+dfsg-1 (armhf) Sat, 23 Dec 2017 07:04:00 +0000 |
+==============================================================================+
Package: rdkit
Version: 201603.5+dfsg-1
Source Version: 201603.5+dfsg-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-25300990-0c9b-4351-a5de-40d89f3e893d' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.5 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.2 MB]
Fetched 22.7 MB in 26s (844 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'rdkit' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debichem/packages/rdkit.git
Please use:
git clone https://anonscm.debian.org/git/debichem/packages/rdkit.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 22.7 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main rdkit 201603.5+dfsg-1 (dsc) [2560 B]
Get:2 http://172.17.0.1/private buster-staging/main rdkit 201603.5+dfsg-1 (tar) [22.7 MB]
Get:3 http://172.17.0.1/private buster-staging/main rdkit 201603.5+dfsg-1 (diff) [7932 B]
Fetched 22.7 MB in 2s (10.2 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/rdkit-rtOm54/rdkit-201603.5+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/rdkit-rtOm54' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-1udX6E/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-1udX6E/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-1udX6E/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-1udX6E/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-1udX6E/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-1udX6E/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-1udX6E/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-1udX6E/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (2814 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
e2fsprogs-l10n
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 58 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-1udX6E/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (19.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13079 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: bison, cmake, debhelper (>> 9), dh-python, doxygen, flex, libboost-dev, libboost-python-dev, libboost-regex-dev, libboost-system-dev, libboost-thread-dev, libsqlite3-dev, latexmk, pandoc, python-dev, python-epydoc, python-imaging, python-numpy, python-pandas, python-sphinx, texlive-fonts-recommended, texlive-generic-extra, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended
Filtered Build-Depends: bison, cmake, debhelper (>> 9), dh-python, doxygen, flex, libboost-dev, libboost-python-dev, libboost-regex-dev, libboost-system-dev, libboost-thread-dev, libsqlite3-dev, latexmk, pandoc, python-dev, python-epydoc, python-imaging, python-numpy, python-pandas, python-sphinx, texlive-fonts-recommended, texlive-generic-extra, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended
dpkg-deb: building package 'sbuild-build-depends-rdkit-dummy' in '/<<BUILDDIR>>/resolver-1udX6E/apt_archive/sbuild-build-depends-rdkit-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-rdkit-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-1udX6E/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-1udX6E/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-1udX6E/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-1udX6E/apt_archive ./ Sources [638 B]
Get:5 copy:/<<BUILDDIR>>/resolver-1udX6E/apt_archive ./ Packages [720 B]
Fetched 2691 B in 0s (3386 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install rdkit build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
e2fsprogs-l10n
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bison bsdmainutils ca-certificates
cmake cmake-data cpp-7 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism docutils-common doxygen file flex fontconfig-config
fonts-dejavu-core fonts-lmodern g++-7 gcc-7 gcc-7-base gettext gettext-base
groff-base icu-devtools intltool-debian latexmk libarchive-zip-perl
libarchive13 libasan4 libatomic1 libavahi-client3 libavahi-common-data
libavahi-common3 libbison-dev libblas3 libboost-atomic1.62-dev
libboost-atomic1.62.0 libboost-chrono1.62-dev libboost-chrono1.62.0
libboost-date-time1.62-dev libboost-date-time1.62.0 libboost-dev
libboost-python-dev libboost-python1.62-dev libboost-python1.62.0
libboost-regex-dev libboost-regex1.62-dev libboost-regex1.62.0
libboost-serialization1.62-dev libboost-serialization1.62.0
libboost-system-dev libboost-system1.62-dev libboost-system1.62.0
libboost-thread-dev libboost-thread1.62-dev libboost-thread1.62.0
libboost1.62-dev libbsd0 libcairo2 libcc1-0 libcilkrts5 libclang1-5.0
libcroco3 libcups2 libcupsimage2 libcurl3 libedit2 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgcc-7-dev
libgcc1 libgfortran4 libglib2.0-0 libgomp1 libgraphite2-3 libgs9
libgs9-common libgssapi-krb5-2 libharfbuzz-icu0 libharfbuzz0b libice6
libicu-dev libicu57 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo
libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp1 libk5crypto3
libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblapack3 liblcms2-2
libllvm5.0 liblua5.1-0 libluajit-5.1-2 libluajit-5.1-common liblzo2-2
libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libnspr4 libnss3 libopenjp2-7
libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpoppler72 libpotrace0
libpsl5 libptexenc1 libpython-dev libpython-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev
libpython3-stdlib libpython3.6 libpython3.6-dev libpython3.6-minimal
libpython3.6-stdlib librhash0 librtmp1 libsigsegv2 libsm6 libsqlite3-dev
libssh2-1 libssl1.0.2 libssl1.1 libstdc++-7-dev libstdc++6 libsynctex1
libtexlua52 libtexluajit2 libtiff5 libtimedate-perl libtool libubsan0 libuv1
libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxapian30 libxau6
libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2
libxmu6 libxpm4 libxrender1 libxt6 libyaml-0-2 libzzip-0-13 m4 man-db
mime-support openssl pandoc pandoc-data po-debconf poppler-data
preview-latex-style python python-alabaster python-babel
python-babel-localedata python-certifi python-chardet python-dateutil
python-dev python-docutils python-epydoc python-idna python-imagesize
python-imaging python-jinja2 python-markupsafe python-minimal python-numpy
python-olefile python-pandas python-pandas-lib python-pil
python-pkg-resources python-pygments python-requests python-roman python-six
python-sphinx python-typing python-tz python-urllib3 python2.7 python2.7-dev
python2.7-minimal python3 python3-dev python3-minimal python3.6
python3.6-dev python3.6-minimal sgml-base sphinx-common t1utils tex-common
texlive-base texlive-binaries texlive-fonts-recommended
texlive-generic-extra texlive-latex-base texlive-latex-extra
texlive-latex-recommended texlive-pictures texlive-plain-generic ucf
x11-common xdg-utils xml-core
Suggested packages:
autoconf-archive gnu-standards autoconf-doc bison-doc wamerican | wordlist
whois vacation ninja-build gcc-7-locales dh-make dwz doxygen-latex
doxygen-doc doxygen-gui graphviz gcc-7-doc libstdc++6-7-dbg libgcc1-dbg
libgomp1-dbg libitm1-dbg libatomic1-dbg libasan4-dbg liblsan0-dbg
libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg
gettext-doc libasprintf-dev libgettextpo-dev groff ghostscript lrzip
libboost-doc libboost1.62-doc gccxml libboost-context1.62-dev
libboost-coroutine1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev
libboost-filesystem1.62-dev libboost-graph1.62-dev
libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev
libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev
libboost-mpi1.62-dev libboost-mpi-python1.62-dev
libboost-program-options1.62-dev libboost-random1.62-dev
libboost-signals1.62-dev libboost-test1.62-dev libboost-timer1.62-dev
libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev
libmpfrc++-dev libntl-dev cups-common krb5-doc krb5-user icu-doc
liblcms2-utils sqlite3-doc libstdc++-7-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk xapian-tools m4-doc less www-browser apparmor
texlive-xetex texlive-luatex pandoc-citeproc context wkhtmltopdf
libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho
fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai
fonts-arphic-uming fonts-nanum python-doc python-tk fonts-linuxlibertine
| ttf-linux-libertine texlive-lang-french epydoc-doc python-jinja2-doc
gfortran python-nose python-numpy-dbg python-numpy-doc python-pandas-doc
python-pil-doc python-pil-dbg python-setuptools ttf-bitstream-vera
python-cryptography python-openssl python-socks python-sphinx-rtd-theme
libjs-mathjax dvipng imagemagick-6.q16 sphinx-doc python-ntlm python2.7-doc
binfmt-support python3-doc python3-tk python3-venv python3.6-venv
python3.6-doc sgml-base-doc gv | postscript-viewer perl-tk xpdf-reader
| pdf-viewer icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl
texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby
Recommended packages:
libfl-dev curl | wget | lynx-cur xpdf-reader | pdf-viewer gv
| postscript-viewer libcupsfilters1 libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs fonts-droid-fallback javascript-common
krb5-locales publicsuffix libltdl-dev libmail-sendmail-perl docutils-doc
python-tk graphviz python-scipy python-matplotlib python-tables
python-numexpr python-xlrd python-statsmodels python-openpyxl python-xlwt
python-bs4 python-html5lib python-lxml python-enum34 python-cryptography
python-ipaddress python-openssl lmodern tex-gyre
texlive-fonts-recommended-doc tipa texlive-latex-base-doc
texlive-latex-extra-doc texlive-latex-recommended-doc ruby
| ruby-interpreter texlive-pictures-doc tk libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bison bsdmainutils ca-certificates
cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism
docutils-common doxygen file flex fontconfig-config fonts-dejavu-core
fonts-lmodern gettext gettext-base groff-base icu-devtools intltool-debian
latexmk libarchive-zip-perl libarchive13 libavahi-client3
libavahi-common-data libavahi-common3 libbison-dev libblas3
libboost-atomic1.62-dev libboost-atomic1.62.0 libboost-chrono1.62-dev
libboost-chrono1.62.0 libboost-date-time1.62-dev libboost-date-time1.62.0
libboost-dev libboost-python-dev libboost-python1.62-dev
libboost-python1.62.0 libboost-regex-dev libboost-regex1.62-dev
libboost-regex1.62.0 libboost-serialization1.62-dev
libboost-serialization1.62.0 libboost-system-dev libboost-system1.62-dev
libboost-system1.62.0 libboost-thread-dev libboost-thread1.62-dev
libboost-thread1.62.0 libboost1.62-dev libbsd0 libcairo2 libclang1-5.0
libcroco3 libcups2 libcupsimage2 libcurl3 libedit2 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran4
libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgssapi-krb5-2
libharfbuzz-icu0 libharfbuzz0b libice6 libicu-dev libicu57 libijs-0.35
libjbig0 libjbig2dec0 libjpeg62-turbo libjs-jquery libjs-sphinxdoc
libjs-underscore libjsoncpp1 libk5crypto3 libkeyutils1 libkpathsea6
libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libllvm5.0 liblua5.1-0
libluajit-5.1-2 libluajit-5.1-common liblzo2-2 libmagic-mgc libmagic1
libmpdec2 libnghttp2-14 libnspr4 libnss3 libopenjp2-7 libpaper-utils
libpaper1 libpipeline1 libpixman-1-0 libpoppler72 libpotrace0 libpsl5
libptexenc1 libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev
libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib
libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib
librhash0 librtmp1 libsigsegv2 libsm6 libsqlite3-dev libssh2-1 libssl1.0.2
libssl1.1 libsynctex1 libtexlua52 libtexluajit2 libtiff5 libtimedate-perl
libtool libuv1 libwebp6 libwebpdemux2 libwebpmux3 libx11-6 libx11-data
libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-0-2
libzzip-0-13 m4 man-db mime-support openssl pandoc pandoc-data po-debconf
poppler-data preview-latex-style python python-alabaster python-babel
python-babel-localedata python-certifi python-chardet python-dateutil
python-dev python-docutils python-epydoc python-idna python-imagesize
python-imaging python-jinja2 python-markupsafe python-minimal python-numpy
python-olefile python-pandas python-pandas-lib python-pil
python-pkg-resources python-pygments python-requests python-roman python-six
python-sphinx python-typing python-tz python-urllib3 python2.7 python2.7-dev
python2.7-minimal python3 python3-dev python3-minimal python3.6
python3.6-dev python3.6-minimal sbuild-build-depends-rdkit-dummy sgml-base
sphinx-common t1utils tex-common texlive-base texlive-binaries
texlive-fonts-recommended texlive-generic-extra texlive-latex-base
texlive-latex-extra texlive-latex-recommended texlive-pictures
texlive-plain-generic ucf x11-common xdg-utils xml-core
The following packages will be upgraded:
cpp-7 g++-7 gcc-7 gcc-7-base libasan4 libatomic1 libcc1-0 libcilkrts5
libgcc-7-dev libgcc1 libgomp1 libstdc++-7-dev libstdc++6 libubsan0
14 upgraded, 228 newly installed, 0 to remove and 44 not upgraded.
Need to get 270 MB of archives.
After this operation, 984 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-1udX6E/apt_archive ./ sbuild-build-depends-rdkit-dummy 0.invalid.0 [1000 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 7.2.0-18 [63.1 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf gcc-7-base armhf 7.2.0-18 [183 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:7.2.0-18 [37.0 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 7.2.0-18 [6776 B]
Get:6 http://172.17.0.1/private buster-staging/main armhf libasan4 armhf 7.2.0-18 [301 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libubsan0 armhf 7.2.0-18 [106 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libcilkrts5 armhf 7.2.0-18 [35.3 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf cpp-7 armhf 7.2.0-18 [5136 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 7.2.0-18 [30.2 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf g++-7 armhf 7.2.0-18 [5585 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf gcc-7 armhf 7.2.0-18 [5468 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libgcc-7-dev armhf 7.2.0-18 [670 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libstdc++-7-dev armhf 7.2.0-18 [1499 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 7.2.0-18 [327 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-3 [95.9 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.14 [178 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-4 [1012 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf cmake-data all 3.9.5-1 [1285 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-8 [7411 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-5.2 [608 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libarchive13 armhf 3.2.2-3.1 [251 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9.2 [12.1 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.15.2-2 [58.6 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.15.2-2 [116 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.15.2-2 [263 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.15.2-2 [133 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.28.0-1 [72.3 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.19.1-4 [43.2 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2n-1 [887 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libcurl3 armhf 7.57.0-1 [275 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.3-2 [73.6 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf librhash0 armhf 1.3.4-3 [94.7 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.11.0-2 [78.9 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf cmake armhf 3.9.5-1 [2439 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf flex armhf 2.6.1-1.3 [414 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf poppler-data all 0.4.8-2 [1490 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.14-4 [393 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.14-4 [1075 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.14-4 [41.0 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libssl1.1 armhf 1.1.0g-2 [1100 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.14-4 [1841 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.14-4 [293 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.14-4 [20.4 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.14-4 [155 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.4~rc1-1 [564 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.4~rc1-1 [1232 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.3-2 [35.7 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-1 [67.5 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.4~rc1-1 [1833 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.4~rc1-1 [224 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.3-2 [19.1 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf dh-python all 2.20170125 [86.8 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.3-2 [22.1 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf sgml-base all 1.29 [14.8 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf ucf all 3.0036 [70.2 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf tex-common all 6.09 [53.2 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.32-1 [225 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.32-1 [105 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.32-1 [63.7 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libedit2 armhf 3.1-20170329-1 [69.0 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20171216.1 [75.9 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libbison-dev armhf 2:3.0.4.dfsg-1+b1 [433 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf bison armhf 2:3.0.4.dfsg-1+b1 [743 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf openssl armhf 1.1.0g-2 [707 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf ca-certificates all 20170717 [178 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 15 [16.2 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.1-1 [2653 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-2 [132 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf debhelper all 11 [990 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf xml-core all 0.18 [23.4 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf docutils-common all 0.14+dfsg-1 [204 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libllvm5.0 armhf 1:5.0~+rc2-1+rpi1 [11.7 MB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libclang1-5.0 armhf 1:5.0~+rc2-1+rpi1 [5529 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libxapian30 armhf 1.4.5-1 [940 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf doxygen armhf 1.8.13-9 [3258 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.12.6-0.1 [304 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf fonts-lmodern all 2.004.5-3 [4540 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 57.1-8 [156 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libkpathsea6 armhf 2017.20170613.44572-8 [151 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libptexenc1 armhf 2017.20170613.44572-8 [56.2 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libsynctex1 armhf 2017.20170613.44572-8 [58.9 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libtexlua52 armhf 2017.20170613.44572-8 [86.0 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libtexluajit2 armhf 2017.20170613.44572-8 [201 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf t1utils armhf 1.41-2 [52.0 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.8.1-0.1 [401 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.12.6-0.1 [351 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libpixman-1-0 armhf 0.34.0-2 [451 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.12-1 [129 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.4-3 [290 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.4-3 [683 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.12-1 [104 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.12-1 [95.9 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.15.8-2 [557 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.10-8 [71.9 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf libavahi-common-data armhf 0.7-3 [122 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf libavahi-common3 armhf 0.7-3 [50.6 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf libavahi-client3 armhf 0.7-3 [53.4 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf libcups2 armhf 2.2.6-2+rpi1+b1 [283 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf libcupsimage2 armhf 2.2.6-2+rpi1+b1 [126 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf libijs-0.35 armhf 0.35-12 [16.0 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf libjbig2dec0 armhf 0.13-5 [52.5 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf liblcms2-2 armhf 2.8-4 [118 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf libopenjp2-7 armhf 2.3.0-1 [139 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.9-1 [224 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf libgs9-common all 9.22~dfsg-1 [5242 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf libgs9 armhf 9.22~dfsg-1 [1820 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.6.2-1 [683 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 1.6.2-1 [497 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf x11-common all 1:7.7+19 [251 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf libnspr4 armhf 2:4.16-1 [95.5 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf libnss3 armhf 2:3.34-1 [942 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf libpoppler72 armhf 0.61.1-2 [1188 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf libpotrace0 armhf 1.14-2 [23.1 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf libsm6 armhf 2:1.2.2-1+b3 [31.2 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf libxmu6 armhf 2:1.1.2-2 [52.0 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf libxaw7 armhf 2:1.0.13-1 [164 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf libxi6 armhf 2:1.7.9-1 [77.8 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf libzzip-0-13 armhf 0.13.62-3.1 [51.5 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf texlive-binaries armhf 2017.20170613.44572-8 [5784 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.2-1 [72.7 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf texlive-base all 2017.20171128-1 [18.7 MB]
Get:156 http://172.17.0.1/private buster-staging/main armhf texlive-latex-base all 2017.20171128-1 [978 kB]
Get:157 http://172.17.0.1/private buster-staging/main armhf latexmk all 1:4.41-1 [376 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.2.0-18 [191 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.7.1-4 [103 kB]
Get:160 http://172.17.0.1/private buster-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-4+b2 [7053 kB]
Get:161 http://172.17.0.1/private buster-staging/main armhf libboost-atomic1.62.0 armhf 1.62.0+dfsg-4+b2 [31.4 kB]
Get:162 http://172.17.0.1/private buster-staging/main armhf libboost-atomic1.62-dev armhf 1.62.0+dfsg-4+b2 [29.8 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf libboost-system1.62.0 armhf 1.62.0+dfsg-4+b2 [32.4 kB]
Get:164 http://172.17.0.1/private buster-staging/main armhf libboost-chrono1.62.0 armhf 1.62.0+dfsg-4+b2 [36.0 kB]
Get:165 http://172.17.0.1/private buster-staging/main armhf libboost-chrono1.62-dev armhf 1.62.0+dfsg-4+b2 [37.6 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf libboost-date-time1.62.0 armhf 1.62.0+dfsg-4+b2 [41.5 kB]
Get:167 http://172.17.0.1/private buster-staging/main armhf libboost-serialization1.62.0 armhf 1.62.0+dfsg-4+b2 [106 kB]
Get:168 http://172.17.0.1/private buster-staging/main armhf libboost-serialization1.62-dev armhf 1.62.0+dfsg-4+b2 [171 kB]
Get:169 http://172.17.0.1/private buster-staging/main armhf libboost-date-time1.62-dev armhf 1.62.0+dfsg-4+b2 [51.4 kB]
Get:170 http://172.17.0.1/private buster-staging/main armhf libboost-dev armhf 1.62.0.1+b8 [3918 B]
Get:171 http://172.17.0.1/private buster-staging/main armhf libboost-python1.62.0 armhf 1.62.0+dfsg-4+b2 [120 kB]
Get:172 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.14-4 [884 kB]
Get:173 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.3-2 [125 kB]
Get:174 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.14-4 [27.6 MB]
Get:175 http://172.17.0.1/private buster-staging/main armhf libpython-dev armhf 2.7.14-4 [20.5 kB]
Get:176 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.14-4 [285 kB]
Get:177 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.14-4 [1208 B]
Get:178 http://172.17.0.1/private buster-staging/main armhf libpython3.6 armhf 3.6.4~rc1-1 [1227 kB]
Get:179 http://172.17.0.1/private buster-staging/main armhf libpython3.6-dev armhf 3.6.4~rc1-1 [2253 kB]
Get:180 http://172.17.0.1/private buster-staging/main armhf libpython3-dev armhf 3.6.3-2 [19.2 kB]
Get:181 http://172.17.0.1/private buster-staging/main armhf python3.6-dev armhf 3.6.4~rc1-1 [510 kB]
Get:182 http://172.17.0.1/private buster-staging/main armhf python3-dev armhf 3.6.3-2 [1236 B]
Get:183 http://172.17.0.1/private buster-staging/main armhf libboost-python1.62-dev armhf 1.62.0+dfsg-4+b2 [157 kB]
Get:184 http://172.17.0.1/private buster-staging/main armhf libboost-python-dev armhf 1.62.0.1+b8 [4088 B]
Get:185 http://172.17.0.1/private buster-staging/main armhf libboost-regex1.62.0 armhf 1.62.0+dfsg-4+b2 [232 kB]
Get:186 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 57.1-8 [15.8 MB]
Get:187 http://172.17.0.1/private buster-staging/main armhf libboost-regex1.62-dev armhf 1.62.0+dfsg-4+b2 [323 kB]
Get:188 http://172.17.0.1/private buster-staging/main armhf libboost-regex-dev armhf 1.62.0.1+b8 [3960 B]
Get:189 http://172.17.0.1/private buster-staging/main armhf libboost-system1.62-dev armhf 1.62.0+dfsg-4+b2 [33.4 kB]
Get:190 http://172.17.0.1/private buster-staging/main armhf libboost-system-dev armhf 1.62.0.1+b8 [3838 B]
Get:191 http://172.17.0.1/private buster-staging/main armhf libboost-thread1.62.0 armhf 1.62.0+dfsg-4+b2 [65.2 kB]
Get:192 http://172.17.0.1/private buster-staging/main armhf libboost-thread1.62-dev armhf 1.62.0+dfsg-4+b2 [71.5 kB]
Get:193 http://172.17.0.1/private buster-staging/main armhf libboost-thread-dev armhf 1.62.0.1+b8 [3730 B]
Get:194 http://172.17.0.1/private buster-staging/main armhf libjs-jquery all 3.2.1-1 [154 kB]
Get:195 http://172.17.0.1/private buster-staging/main armhf libjs-underscore all 1.8.3~dfsg-1 [63.8 kB]
Get:196 http://172.17.0.1/private buster-staging/main armhf libjs-sphinxdoc all 1.6.5-2 [86.1 kB]
Get:197 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.7.1-4 [1508 kB]
Get:198 http://172.17.0.1/private buster-staging/main armhf liblua5.1-0 armhf 5.1.5-8.1 [83.3 kB]
Get:199 http://172.17.0.1/private buster-staging/main armhf libluajit-5.1-common all 2.1.0~beta3+dfsg-5.1 [46.7 kB]
Get:200 http://172.17.0.1/private buster-staging/main armhf libluajit-5.1-2 armhf 2.1.0~beta3+dfsg-5.1 [191 kB]
Get:201 http://172.17.0.1/private buster-staging/main armhf libsqlite3-dev armhf 3.21.0-1 [631 kB]
Get:202 http://172.17.0.1/private buster-staging/main armhf libwebp6 armhf 0.6.0-4 [218 kB]
Get:203 http://172.17.0.1/private buster-staging/main armhf libwebpdemux2 armhf 0.6.0-4 [80.9 kB]
Get:204 http://172.17.0.1/private buster-staging/main armhf libwebpmux3 armhf 0.6.0-4 [88.3 kB]
Get:205 http://172.17.0.1/private buster-staging/main armhf libyaml-0-2 armhf 0.1.7-2 [39.9 kB]
Get:206 http://172.17.0.1/private buster-staging/main armhf pandoc-data all 1.19.2.4~dfsg-1 [236 kB]
Get:207 http://172.17.0.1/private buster-staging/main armhf pandoc armhf 1.19.2.4~dfsg-1+b1 [8608 kB]
Get:208 http://172.17.0.1/private buster-staging/main armhf preview-latex-style all 11.91-1 [201 kB]
Get:209 http://172.17.0.1/private buster-staging/main armhf python-babel-localedata all 2.4.0+dfsg.1-2 [3415 kB]
Get:210 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 38.2.4-1 [171 kB]
Get:211 http://172.17.0.1/private buster-staging/main armhf python-tz all 2017.2-2 [33.9 kB]
Get:212 http://172.17.0.1/private buster-staging/main armhf python-babel all 2.4.0+dfsg.1-2 [84.3 kB]
Get:213 http://172.17.0.1/private buster-staging/main armhf python-certifi all 2017.7.27.1-2 [166 kB]
Get:214 http://172.17.0.1/private buster-staging/main armhf python-chardet all 3.0.4-1 [80.2 kB]
Get:215 http://172.17.0.1/private buster-staging/main armhf python-six all 1.11.0-1 [14.9 kB]
Get:216 http://172.17.0.1/private buster-staging/main armhf python-dateutil all 2.6.1-1 [61.1 kB]
Get:217 http://172.17.0.1/private buster-staging/main armhf python-roman all 2.0.0-2 [8130 B]
Get:218 http://172.17.0.1/private buster-staging/main armhf python-docutils all 0.14+dfsg-1 [379 kB]
Get:219 http://172.17.0.1/private buster-staging/main armhf python-epydoc all 3.0.1+dfsg-16 [221 kB]
Get:220 http://172.17.0.1/private buster-staging/main armhf python-idna all 2.5-1 [33.1 kB]
Get:221 http://172.17.0.1/private buster-staging/main armhf python-imagesize all 0.7.1-1 [3814 B]
Get:222 http://172.17.0.1/private buster-staging/main armhf python-olefile all 0.44-1 [37.3 kB]
Get:223 http://172.17.0.1/private buster-staging/main armhf python-pil armhf 4.3.0-2 [336 kB]
Get:224 http://172.17.0.1/private buster-staging/main armhf python-imaging all 4.3.0-2 [55.1 kB]
Get:225 http://172.17.0.1/private buster-staging/main armhf python-markupsafe armhf 1.0-1+b1 [13.7 kB]
Get:226 http://172.17.0.1/private buster-staging/main armhf python-jinja2 all 2.10-1 [106 kB]
Get:227 http://172.17.0.1/private buster-staging/main armhf python-numpy armhf 1:1.13.3-2 [1727 kB]
Get:228 http://172.17.0.1/private buster-staging/main armhf python-pandas-lib armhf 0.20.3-10+rpi1 [2512 kB]
Get:229 http://172.17.0.1/private buster-staging/main armhf python-pandas all 0.20.3-10+rpi1 [2623 kB]
Get:230 http://172.17.0.1/private buster-staging/main armhf python-pygments all 2.2.0+dfsg-1 [590 kB]
Get:231 http://172.17.0.1/private buster-staging/main armhf python-urllib3 all 1.21.1-1 [97.0 kB]
Get:232 http://172.17.0.1/private buster-staging/main armhf python-requests all 2.18.1-1 [76.5 kB]
Get:233 http://172.17.0.1/private buster-staging/main armhf python-alabaster all 0.7.8-1 [18.4 kB]
Get:234 http://172.17.0.1/private buster-staging/main armhf python-typing all 3.6.2-1 [22.0 kB]
Get:235 http://172.17.0.1/private buster-staging/main armhf sphinx-common all 1.6.5-2 [420 kB]
Get:236 http://172.17.0.1/private buster-staging/main armhf python-sphinx all 1.6.5-2 [459 kB]
Get:237 http://172.17.0.1/private buster-staging/main armhf texlive-fonts-recommended all 2017.20171128-1 [5293 kB]
Get:238 http://172.17.0.1/private buster-staging/main armhf texlive-plain-generic all 2017.20171128-1 [23.7 MB]
Get:239 http://172.17.0.1/private buster-staging/main armhf texlive-generic-extra all 2017.20171128-1 [31.1 kB]
Get:240 http://172.17.0.1/private buster-staging/main armhf texlive-latex-recommended all 2017.20171128-1 [14.9 MB]
Get:241 http://172.17.0.1/private buster-staging/main armhf texlive-pictures all 2017.20171128-1 [4025 kB]
Get:242 http://172.17.0.1/private buster-staging/main armhf texlive-latex-extra all 2017.20171128-1 [10.6 MB]
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update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode
update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode
Setting up python-sphinx (1.6.5-2) ...
Setting up dh-autoreconf (15) ...
Setting up python3 (3.6.3-2) ...
Setting up python3-dev (3.6.3-2) ...
Setting up dh-strip-nondeterminism (0.040-1) ...
Setting up dh-python (2.20170125) ...
Setting up debhelper (11) ...
Setting up libboost-python1.62-dev (1.62.0+dfsg-4+b2) ...
Setting up libboost-python-dev (1.62.0.1+b8) ...
Setting up sbuild-build-depends-rdkit-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.25-2+rpi1) ...
Processing triggers for systemd (235-3) ...
Processing triggers for ca-certificates (20170717) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for tex-common (6.09) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.29.1-8+rpi1 dpkg-dev_1.19.0.4 g++-7_7.2.0-18 gcc-7_7.2.0-18 libc6-dev_2.25-2+rpi1 libstdc++-7-dev_7.2.0-18 libstdc++6_7.2.0-18 linux-libc-dev_4.9.51-1+rpi3+b1
Package versions: adduser_3.116 apt_1.6~alpha5 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20171216.1 base-files_10+rpi1 base-passwd_3.5.44 bash_4.4-5 binutils_2.29.1-8+rpi1 binutils-arm-linux-gnueabihf_2.29.1-8+rpi1 binutils-common_2.29.1-8+rpi1 bison_2:3.0.4.dfsg-1+b1 bsdmainutils_9.0.14 bsdutils_1:2.30.2-0.1 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 cmake_3.9.5-1 cmake-data_3.9.5-1 coreutils_8.28-1 cpio_2.11+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.2.0-18 dash_0.5.8-2.5 debconf_1.5.65 debhelper_11 debianutils_4.8.3 dh-autoreconf_15 dh-python_2.20170125 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dirmngr_2.2.2-1+rpi1 dmsetup_2:1.02.145-4 docutils-common_0.14+dfsg-1 doxygen_1.8.13-9 dpkg_1.19.0.4 dpkg-dev_1.19.0.4 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 e2fsprogs-l10n_1.43.7-1 fakeroot_1.22-2 fdisk_2.30.2-0.1 file_1:5.32-1 findutils_4.6.0+git+20170828-2 flex_2.6.1-1.3 fontconfig-config_2.12.6-0.1 fonts-dejavu-core_2.37-1 fonts-lmodern_2.004.5-3 g++_4:7.2.0-1d1 g++-7_7.2.0-18 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-6-base_6.4.0-10 gcc-7_7.2.0-18 gcc-7-base_7.2.0-18 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnupg_2.2.2-1+rpi1 gnupg-l10n_2.2.2-1+rpi1 gnupg-utils_2.2.2-1+rpi1 gpg_2.2.2-1+rpi1 gpg-agent_2.2.2-1+rpi1 gpg-wks-client_2.2.2-1+rpi1 gpg-wks-server_2.2.2-1+rpi1 gpgconf_2.2.2-1+rpi1 gpgsm_2.2.2-1+rpi1 gpgv_2.2.2-1+rpi1 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 icu-devtools_57.1-8 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 latexmk_1:4.41-1 libacl1_2.2.52-3 libapparmor1_2.11.1-3 libapt-pkg5.0_1.6~alpha5 libarchive-zip-perl_1.59-1 libarchive13_3.2.2-3.1 libasan4_7.2.0-18 libassuan0_2.4.4-1 libatomic1_7.2.0-18 libattr1_1:2.4.47-2 libaudit-common_1:2.8.1-2 libaudit1_1:2.8.1-2 libavahi-client3_0.7-3 libavahi-common-data_0.7-3 libavahi-common3_0.7-3 libbinutils_2.29.1-8+rpi1 libbison-dev_2:3.0.4.dfsg-1+b1 libblas3_3.7.1-4 libblkid1_2.30.2-0.1 libboost-atomic1.62-dev_1.62.0+dfsg-4+b2 libboost-atomic1.62.0_1.62.0+dfsg-4+b2 libboost-chrono1.62-dev_1.62.0+dfsg-4+b2 libboost-chrono1.62.0_1.62.0+dfsg-4+b2 libboost-date-time1.62-dev_1.62.0+dfsg-4+b2 libboost-date-time1.62.0_1.62.0+dfsg-4+b2 libboost-dev_1.62.0.1+b8 libboost-python-dev_1.62.0.1+b8 libboost-python1.62-dev_1.62.0+dfsg-4+b2 libboost-python1.62.0_1.62.0+dfsg-4+b2 libboost-regex-dev_1.62.0.1+b8 libboost-regex1.62-dev_1.62.0+dfsg-4+b2 libboost-regex1.62.0_1.62.0+dfsg-4+b2 libboost-serialization1.62-dev_1.62.0+dfsg-4+b2 libboost-serialization1.62.0_1.62.0+dfsg-4+b2 libboost-system-dev_1.62.0.1+b8 libboost-system1.62-dev_1.62.0+dfsg-4+b2 libboost-system1.62.0_1.62.0+dfsg-4+b2 libboost-thread-dev_1.62.0.1+b8 libboost-thread1.62-dev_1.62.0+dfsg-4+b2 libboost-thread1.62.0_1.62.0+dfsg-4+b2 libboost1.62-dev_1.62.0+dfsg-4+b2 libbsd0_0.8.6-3 libbz2-1.0_1.0.6-8.1 libc-bin_2.25-2+rpi1 libc-dev-bin_2.25-2+rpi1 libc6_2.25-2+rpi1 libc6-dev_2.25-2+rpi1 libcairo2_1.15.8-2 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.1 libcc1-0_7.2.0-18 libcilkrts5_7.2.0-18 libclang1-5.0_1:5.0~+rc2-1+rpi1 libcomerr2_1.43.7-1 libcroco3_0.6.12-2 libcryptsetup4_2:1.7.5-1 libcups2_2.2.6-2+rpi1+b1 libcupsimage2_2.2.6-2+rpi1+b1 libcurl3_7.57.0-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.2-1 libdebconfclient0_0.232 libdevmapper1.02.1_2:1.02.145-4 libdpkg-perl_1.19.0.4 libdrm-common_2.4.88-1+rpi1 libdrm2_2.4.88-1+rpi1 libedit2_3.1-20170329-1 libexpat1_2.2.3-2 libexpat1-dev_2.2.3-2 libfakeroot_1.22-2 libfdisk1_2.30.2-0.1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.040-1 libfontconfig1_2.12.6-0.1 libfreetype6_2.8.1-0.1 libgcc-7-dev_7.2.0-18 libgcc1_1:7.2.0-18 libgcrypt20_1.8.1-4 libgdbm3_1.8.3-14 libgfortran4_7.2.0-18 libglib2.0-0_2.54.1-1 libgmp10_2:6.1.2+dfsg-1.1 libgnutls30_3.5.16-1 libgomp1_7.2.0-18 libgpg-error0_1.27-5 libgraphite2-3_1.3.10-8 libgs9_9.22~dfsg-1 libgs9-common_9.22~dfsg-1 libgssapi-krb5-2_1.15.2-2 libharfbuzz-icu0_1.6.2-1 libharfbuzz0b_1.6.2-1 libhogweed4_3.3-2 libice6_2:1.0.9-2 libicu-dev_57.1-8 libicu57_57.1-8 libidn11_1.33-2 libidn2-0_2.0.4-1.1 libijs-0.35_0.35-12 libip4tc0_1.6.1-2+b1 libisl15_0.18-1 libjbig0_2.1-3.1+b2 libjbig2dec0_0.13-5 libjpeg62-turbo_1:1.5.2-2+b1 libjs-jquery_3.2.1-1 libjs-sphinxdoc_1.6.5-2 libjs-underscore_1.8.3~dfsg-1 libjsoncpp1_1.7.4-3 libk5crypto3_1.15.2-2 libkeyutils1_1.5.9-9.2 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libkpathsea6_2017.20170613.44572-8 libkrb5-3_1.15.2-2 libkrb5support0_1.15.2-2 libksba8_1.3.5-2 liblapack3_3.7.1-4 liblcms2-2_2.8-4 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 libllvm5.0_1:5.0~+rc2-1+rpi1 liblocale-gettext-perl_1.07-3+b2 liblua5.1-0_5.1.5-8.1 libluajit-5.1-2_2.1.0~beta3+dfsg-5.1 libluajit-5.1-common_2.1.0~beta3+dfsg-5.1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.30.2-0.1 libmpc3_1.0.3-2 libmpdec2_2.4.2-1 libmpfr4_3.1.6-1 libncurses5_6.0+20170902-1 libncursesw5_6.0+20170902-1 libnettle6_3.3-2 libnghttp2-14_1.28.0-1 libnpth0_1.5-3 libnspr4_2:4.16-1 libnss3_2:3.34-1 libopenjp2-7_2.3.0-1 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpaper-utils_1.1.24+nmu5 libpaper1_1.1.24+nmu5 libpcre3_2:8.39-4 libperl5.26_5.26.1-2 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libplymouth4_0.9.3-1 libpng16-16_1.6.34-1 libpoppler72_0.61.1-2 libpotrace0_1.14-2 libprocps6_2:3.3.12-3 libpsl5_0.19.1-4 libptexenc1_2017.20170613.44572-8 libpython-dev_2.7.14-4 libpython-stdlib_2.7.14-4 libpython2.7_2.7.14-4 libpython2.7-dev_2.7.14-4 libpython2.7-minimal_2.7.14-4 libpython2.7-stdlib_2.7.14-4 libpython3-dev_3.6.3-2 libpython3-stdlib_3.6.3-2 libpython3.6_3.6.4~rc1-1 libpython3.6-dev_3.6.4~rc1-1 libpython3.6-minimal_3.6.4~rc1-1 libpython3.6-stdlib_3.6.4~rc1-1 libreadline7_7.0-3 librhash0_1.3.4-3 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libsm6_2:1.2.2-1+b3 libsmartcols1_2.30.2-0.1 libsqlite3-0_3.21.0-1 libsqlite3-dev_3.21.0-1 libss2_1.43.7-1 libssh2-1_1.8.0-1 libssl1.0.2_1.0.2n-1 libssl1.1_1.1.0g-2 libstdc++-7-dev_7.2.0-18 libstdc++6_7.2.0-18 libsynctex1_2017.20170613.44572-8 libsystemd0_235-3 libtasn1-6_4.12-2.1 libtexlua52_2017.20170613.44572-8 libtexluajit2_2017.20170613.44572-8 libtext-charwidth-perl_0.04-7.1 libtext-iconv-perl_1.7-5+b9 libtext-wrapi18n-perl_0.06-7.1 libtiff5_4.0.9-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170902-1 libtool_2.4.6-2 libubsan0_7.2.0-18 libudev1_235-3 libunistring2_0.9.7-2 libuuid1_2.30.2-0.1 libuv1_1.11.0-2 libwebp6_0.6.0-4 libwebpdemux2_0.6.0-4 libwebpmux3_0.6.0-4 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libxapian30_1.4.5-1 libxau6_1:1.0.8-1+b2 libxaw7_2:1.0.13-1 libxcb-render0_1.12-1 libxcb-shm0_1.12-1 libxcb1_1.12-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxi6_2:1.7.9-1 libxml2_2.9.4+dfsg1-5.2 libxmu6_2:1.1.2-2 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1 libyaml-0-2_0.1.7-2 libzzip-0-13_0.13.62-3.1 linux-base_4.5 linux-libc-dev_4.9.51-1+rpi3+b1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-4 mawk_1.3.3-17 mime-support_3.60 mount_2.30.2-0.1 multiarch-support_2.25-2+rpi1 ncurses-base_6.0+20170902-1 ncurses-bin_6.0+20170902-1 openssl_1.1.0g-2 pandoc_1.19.2.4~dfsg-1+b1 pandoc-data_1.19.2.4~dfsg-1 passwd_1:4.5-1 patch_2.7.5-1 perl_5.26.1-2 perl-base_5.26.1-2 perl-modules-5.26_5.26.1-2 pinentry-curses_1.0.0-3 plymouth_0.9.3-1 po-debconf_1.0.20 poppler-data_0.4.8-2 preview-latex-style_11.91-1 procps_2:3.3.12-3 python_2.7.14-4 python-alabaster_0.7.8-1 python-babel_2.4.0+dfsg.1-2 python-babel-localedata_2.4.0+dfsg.1-2 python-certifi_2017.7.27.1-2 python-chardet_3.0.4-1 python-dateutil_2.6.1-1 python-dev_2.7.14-4 python-docutils_0.14+dfsg-1 python-epydoc_3.0.1+dfsg-16 python-idna_2.5-1 python-imagesize_0.7.1-1 python-imaging_4.3.0-2 python-jinja2_2.10-1 python-markupsafe_1.0-1+b1 python-minimal_2.7.14-4 python-numpy_1:1.13.3-2 python-olefile_0.44-1 python-pandas_0.20.3-10+rpi1 python-pandas-lib_0.20.3-10+rpi1 python-pil_4.3.0-2 python-pkg-resources_38.2.4-1 python-pygments_2.2.0+dfsg-1 python-requests_2.18.1-1 python-roman_2.0.0-2 python-six_1.11.0-1 python-sphinx_1.6.5-2 python-typing_3.6.2-1 python-tz_2017.2-2 python-urllib3_1.21.1-1 python2.7_2.7.14-4 python2.7-dev_2.7.14-4 python2.7-minimal_2.7.14-4 python3_3.6.3-2 python3-dev_3.6.3-2 python3-minimal_3.6.3-2 python3.6_3.6.4~rc1-1 python3.6-dev_3.6.4~rc1-1 python3.6-minimal_3.6.4~rc1-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-rdkit-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.11 sgml-base_1.29 sphinx-common_1.6.5-2 systemd_235-3 sysvinit-utils_2.88dsf-59.10 t1utils_1.41-2 tar_1.29b-2 tex-common_6.09 texlive-base_2017.20171128-1 texlive-binaries_2017.20170613.44572-8 texlive-fonts-recommended_2017.20171128-1 texlive-generic-extra_2017.20171128-1 texlive-latex-base_2017.20171128-1 texlive-latex-extra_2017.20171128-1 texlive-latex-recommended_2017.20171128-1 texlive-pictures_2017.20171128-1 texlive-plain-generic_2017.20171128-1 tzdata_2017c-1 ucf_3.0036 udev_235-3 util-linux_2.30.2-0.1 x11-common_1:7.7+19 xdg-utils_1.1.2-1 xml-core_0.18 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Dec 18 11:43:53 2017 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./rdkit_201603.5+dfsg-1.dsc
dpkg-source: info: extracting rdkit in /<<BUILDDIR>>/rdkit-201603.5+dfsg
dpkg-source: info: unpacking rdkit_201603.5+dfsg.orig.tar.xz
dpkg-source: info: unpacking rdkit_201603.5+dfsg-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-25300990-0c9b-4351-a5de-40d89f3e893d
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package rdkit
dpkg-buildpackage: info: source version 201603.5+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build rdkit-201603.5+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2 --buildsystem=cmake --parallel
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg'
find /<<BUILDDIR>>/rdkit-201603.5+dfsg -name "*.pyc" | xargs rm -f
rm -f -r Projects/DbCLI/testData/bzr/ rdkit/Chem/inchi.py
rm -f -r Docs/Book/_build Code/docs rdkit/docs Code/doxygen_sqlite3.db
rm -f \
Code/ForceField/MMFF/test_data/MMFF94_dative_min.sdf \
Code/ForceField/MMFF/test_data/MMFF94_dative_min_from_SMILES.sdf \
Code/ForceField/MMFF/test_data/MMFF94_hypervalent_min.sdf \
Code/ForceField/MMFF/test_data/MMFF94_hypervalent_min_from_SMILES.sdf \
Code/ForceField/MMFF/test_data/MMFF94_reference.log \
Code/ForceField/MMFF/test_data/MMFF94s_reference.log \
Code/ForceField/MMFF/test_data/testMMFFForceField.log \
Code/GraphMol/Depictor/test_data/cis_trans_cpp.out.sdf \
Code/GraphMol/Depictor/test_data/collisions.out.sdf \
Code/GraphMol/Depictor/test_data/first_200.out.sdf \
Code/GraphMol/Depictor/test_data/test1.out.sdf \
Code/GraphMol/FileParsers/test_data/blah.sdf \
Code/GraphMol/FileParsers/test_data/cdk2_stereo.sdf \
Code/GraphMol/FileParsers/test_data/outNCI_few.sdf \
Code/GraphMol/FileParsers/test_data/outNCI_few.tdt \
Code/GraphMol/FileParsers/test_data/outNCI_first_200.props.sdf \
Code/GraphMol/FileParsers/test_data/outSmiles.csv \
Code/GraphMol/ForceFieldHelpers/UFF/test_data/Issue62.sdf \
Code/GraphMol/MolAlign/test_data/ref_e2_pyCrippenO3A.sdf \
Code/GraphMol/SLNParse/lex.yysln.cpp \
Code/GraphMol/SLNParse/sln.tab.cpp \
Code/GraphMol/SLNParse/sln.tab.hpp \
Code/GraphMol/SmilesParse/lex.yysmarts.cpp \
Code/GraphMol/SmilesParse/lex.yysmiles.cpp \
Code/GraphMol/SmilesParse/smarts.tab.cpp \
Code/GraphMol/SmilesParse/smarts.tab.hpp \
Code/GraphMol/SmilesParse/smiles.tab.cpp \
Code/GraphMol/SmilesParse/smiles.tab.hpp \
Code/GraphMol/Wrap/test_data/outNCI_few.sdf \
Code/GraphMol/Wrap/test_data/outSmiles.txt \
Code/RDGeneral/versions.cpp \
Docs/Book/Cartridge.rst \
Docs/Book/Cookbook.rst \
Docs/Book/Install.rst \
Docs/Book/Overview.rst \
rdkit/ML/Data/test_data/testgeneral.dat.pkl \
rdkit/ML/Data/test_data/testquant.qdat.pkl
dh_auto_clean
make[1]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg'
dh_clean -O--buildsystem=cmake -O--parallel
debian/rules build-arch
dh build-arch --with python2 --buildsystem=cmake --parallel
dh_update_autotools_config -a -O--buildsystem=cmake -O--parallel
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg'
dh_auto_configure -- \
-DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON \
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cd obj-arm-linux-gnueabihf && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF -DRDK_BUILD_THREADSAFE_SSS=ON -DRDK_BUILD_PYTHON_WRAPPERS=ON -DRDK_OPTIMIZE_NATIVE=OFF
-- The C compiler identification is GNU 7.2.0
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-- Found PythonInterp: /usr/bin/python (found version "2.7.14")
-- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython2.7.so (found version "2.7.14+")
-- Boost version: 1.62.0
-- Found the following Boost libraries:
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-- Found Threads: TRUE
-- Boost version: 1.62.0
-- Found the following Boost libraries:
-- thread
-- system
-- chrono
-- date_time
-- atomic
-- Boost version: 1.62.0
-- Found the following Boost libraries:
-- serialization
== Using strict rotor definition
== Updating Filters.cpp from pains file
== Done updating pains files
-- Boost version: 1.62.0
-- Found the following Boost libraries:
-- regex
-- Configuring done
-- Generating done
CMake Warning:
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make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
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cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/RDBoost /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color=
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/RDGeneral /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color=
Scanning dependencies of target RDBoost
Scanning dependencies of target testDict
Scanning dependencies of target testMatrices
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
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make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
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Scanning dependencies of target DataStructs
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make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 2%] Building CXX object Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o
[ 2%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDict.dir/testDict.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/testDict.cpp
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/testMatrices.cpp
[ 3%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/RDBoost && /usr/bin/c++ -DRDBoost_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/Wrap.cpp
[ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/BitVect.cpp
[ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/SparseBitVect.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/testDict.cpp:13:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function 'void testVectToString()':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 4%] Linking CXX executable testMatrices
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 4%] Linking CXX executable testDict
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1
[ 4%] Built target testMatrices
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testDict.dir/testDict.cpp.o -o testDict ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/EigenSolvers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/EigenSolvers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color=
Scanning dependencies of target EigenSolvers
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make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 5%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/EigenSolvers && /usr/bin/c++ -DEigenSolvers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 5%] Built target testDict
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Catalogs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Catalogs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color=
Scanning dependencies of target Catalogs
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
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make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Catalogs/Catalog.cpp
[ 5%] Linking CXX shared library ../../lib/libRDBoost.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libRDBoost.so.1 -o ../../lib/libRDBoost.so.1.2016.03.5 CMakeFiles/RDBoost.dir/Wrap.cpp.o ../../lib/libRDGeneral.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization -lpthread -lboost_thread -lboost_system
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDBoost.so.1.2016.03.5 ../../lib/libRDBoost.so.1 ../../lib/libRDBoost.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 5%] Built target RDBoost
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Query /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color=
Scanning dependencies of target testQuery
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 6%] Building CXX object Code/Query/CMakeFiles/testQuery.dir/test.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Query && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testQuery.dir/test.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/test.cpp
[ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/ExplicitBitVect.cpp
[ 6%] Linking CXX shared library ../../../lib/libEigenSolvers.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libEigenSolvers.so.1 -o ../../../lib/libEigenSolvers.so.1.2016.03.5 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1 ../../../lib/libEigenSolvers.so
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cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Catalogs/CatalogParams.cpp
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cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/Cluster/Murtagh && /usr/bin/c++ -DClustering_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/Cluster/Murtagh/Clustering.cpp
[ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o
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[ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/BitOps.cpp
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cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/SimDivPickers && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/SimDivPickers/MaxMinPicker.cpp
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[ 10%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o
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[ 10%] Linking CXX executable testChemicalFeatures
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make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 10%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/RDBoost/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/Wrap/RDBase.cpp
[ 10%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/DiscreteDistMat.cpp
[ 11%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o ../../../../lib/libhc.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 11%] Built target Clustering
[ 11%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/DiscreteValueVect.cpp
[ 12%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/FPBReader.cpp
[ 12%] Linking CXX shared library ../../lib/libSimDivPickers.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libSimDivPickers.so.1 -o ../../lib/libSimDivPickers.so.1.2016.03.5 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o ../../lib/libhc.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libSimDivPickers.so.1.2016.03.5 ../../lib/libSimDivPickers.so.1 ../../lib/libSimDivPickers.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 12%] Built target SimDivPickers
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/boost/dynamic_bitset/dynamic_bitset.hpp:24,
from /usr/include/boost/dynamic_bitset.hpp:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/ExplicitBitVect.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/FPBReader.cpp:15:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, unsigned int>}; _Tp = std::pair<double, unsigned int>; _Alloc = std::allocator<std::pair<double, unsigned int> >]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<std::pair<double, unsigned int> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<std::pair<double, unsigned int> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<double, unsigned int>}; _Tp = std::pair<double, unsigned int>; _Alloc = std::allocator<std::pair<double, unsigned int> >]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/Wrap/RDBase.cpp:15:0:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
" returning.");
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
In file included from /usr/include/c++/7/algorithm:62:0,
from /usr/include/boost/dynamic_bitset/dynamic_bitset.hpp:23,
from /usr/include/boost/dynamic_bitset.hpp:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/ExplicitBitVect.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/FPBReader.cpp:15:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<Rankers::pairGreater<double, unsigned int> >]':
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<Rankers::pairGreater<double, unsigned int> >]':
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
__final_insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /usr/include/boost/dynamic_bitset/dynamic_bitset.hpp:23,
from /usr/include/boost/dynamic_bitset.hpp:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/ExplicitBitVect.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/FPBReader.cpp:15:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >; _Distance = int; _Tp = std::pair<double, unsigned int>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<Rankers::pairGreater<double, unsigned int> >]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /usr/include/boost/dynamic_bitset/dynamic_bitset.hpp:23,
from /usr/include/boost/dynamic_bitset.hpp:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/ExplicitBitVect.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/FPBReader.cpp:15:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<Rankers::pairGreater<double, unsigned int> >]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In member function 'std::vector<std::pair<double, unsigned int> > RDKit::FPBReader::getTverskyNeighbors(const uint8_t*, double, double, double, bool) const':
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In member function 'std::vector<std::pair<double, unsigned int> > RDKit::FPBReader::getTanimotoNeighbors(const uint8_t*, double, bool) const':
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, unsigned int>*, std::vector<std::pair<double, unsigned int> > >' changed in GCC 7.1
std::__final_insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 12%] Linking CXX shared library ../../lib/libDataStructs.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libDataStructs.so.1 -o ../../lib/libDataStructs.so.1.2016.03.5 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libDataStructs.so.1 ../../lib/libDataStructs.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 12%] Built target DataStructs
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
Scanning dependencies of target testFPB
Scanning dependencies of target testDataStructs
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
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make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 13%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o
[ 14%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/testFPB.cpp
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/testDatastructs.cpp
Scanning dependencies of target cDataStructs
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/Wrap/DataStructs.cpp
[ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/Wrap/DiscreteValueVect.cpp
[ 15%] Linking CXX executable testFPB
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFPB.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testFPB.dir/testFPB.cpp.o -o testFPB ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 15%] Built target testFPB
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
Scanning dependencies of target RDGeometryLib
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 15%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.cpp
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:184:56: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
off_type py_pos = bp::extract<off_type>(py_tell());
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:154:58: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
off_type py_pos = bp::extract<off_type>(py_tell());
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(boost_adaptbx::python::streambuf::off_type, std::ios_base::seekdir, std::ios_base::openmode)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:335:16: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
result = off_type(bp::extract<off_type>(py_tell()));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 15%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Transform2D.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:15,
from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/Wrap/RDBase.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:15,
from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/Wrap/RDBase.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'void boost::python::container_utils::extend_container(Container&, boost::python::api::object) [with Container = std::vector<double>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In static member function 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::base_append(Container&, boost::python::api::object) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:15,
from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/Wrap/RDBase.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::iterator) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:165:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:165:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:15,
from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/Wrap/RDBase.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In static member function 'static void boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_delete_item(Container&, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; bool NoProxy = false; bool NoSlice = false; Data = double; Index = unsigned int; Key = double]':
/usr/include/c++/7/bits/stl_vector.h:1210:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
^
/usr/include/c++/7/bits/stl_vector.h: In function 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::index_type, boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::index_type, const data_type&) [with Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]':
/usr/include/c++/7/bits/stl_vector.h:1210:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
^
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:15,
from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/Wrap/RDBase.cpp:11:
/usr/include/c++/7/bits/vector.tcc:143:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(begin() + (__position - cbegin()), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /usr/include/boost/function/detail/prologue.hpp:13,
from /usr/include/boost/function/function_template.hpp:13,
from /usr/include/boost/function/detail/maybe_include.hpp:13,
from /usr/include/boost/function/function0.hpp:11,
from /usr/include/boost/python/errors.hpp:13,
from /usr/include/boost/python/handle.hpp:11,
from /usr/include/boost/python/args_fwd.hpp:10,
from /usr/include/boost/python/args.hpp:10,
from /usr/include/boost/python.hpp:11,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:2,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/Wrap/RDBase.cpp:11:
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const double>]':
/usr/include/c++/7/bits/stl_algo.h:112:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
__find_if(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:112:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h: In static member function 'static bool boost::python::indexing_suite<Container, DerivedPolicies, NoProxy, NoSlice, Data, Index, Key>::base_contains(Container&, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; bool NoProxy = false; bool NoSlice = false; Data = double; Index = unsigned int; Key = double]':
/usr/include/c++/7/bits/stl_algo.h:162:43: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__iterator_category(__first));
^
/usr/include/c++/7/bits/stl_algo.h:162:43: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
std::__iterator_category(__first));
^
[ 15%] Linking CXX executable testDataStructs
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
[ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/Wrap/SparseIntVect.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 15%] Built target testDataStructs
[ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/Wrap/wrap_SparseBV.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:15,
from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/Wrap/RDBase.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:15,
from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/Wrap/RDBase.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In static member function 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::base_extend(Container&, boost::python::api::object) [with Container = std::vector<double>; bool NoProxy = false; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>]':
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/Wrap/RDBase.cpp:11:
/usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp: In static member function 'static void boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::set_slice(Container&, boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::index_type, boost::python::vector_indexing_suite<Container, NoProxy, DerivedPolicies>::index_type, Iter, Iter) [with Iter = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; Container = std::vector<double>; bool NoProxy = true; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, true>]':
/usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:109:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
set_slice(Container& container, index_type from,
^~~~~~~~~
/usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:109:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:15,
from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/Wrap/RDBase.cpp:11:
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_vector.h:1210:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg));
^
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12:0,
from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/Wrap/RDBase.cpp:11:
/usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp: In static member function 'static void boost::python::detail::slice_helper<Container, DerivedPolicies, ProxyHandler, Data, Index>::base_set_slice(Container&, PySliceObject*, PyObject*) [with Container = std::vector<double>; DerivedPolicies = boost::python::detail::final_vector_derived_policies<std::vector<double>, false>; ProxyHandler = boost::python::detail::no_proxy_helper<std::vector<double>, boost::python::detail::final_vector_derived_policies<std::vector<double>, false>, boost::python::detail::container_element<std::vector<double>, unsigned int, boost::python::detail::final_vector_derived_policies<std::vector<double>, false> >, unsigned int>; Data = double; Index = unsigned int]':
/usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
DerivedPolicies::set_slice(container, from, to,
~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
temp.begin(), temp.end());
~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:685:47: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
[ 15%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Transform3D.cpp
[ 15%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/UniformGrid3D.cpp
[ 16%] Linking CXX shared module ../../../rdkit/rdBase.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 16%] Built target rdBase
[ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataManip/MetricMatrixCalc/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataManip/MetricMatrixCalc/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMetricMatrixCalc
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 16%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp
[ 17%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/GridUtils.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/GridUtils.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/GridUtils.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const RDGeom::Point3D&}; _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/GridUtils.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/GridUtils.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In function 'std::vector<RDGeom::Point3D> RDGeom::findGridTerminalPoints(const RDGeom::UniformGrid3D&, double, double)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 17%] Linking CXX shared library ../../lib/libRDGeometryLib.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libRDGeometryLib.so.1 -o ../../lib/libRDGeometryLib.so.1.2016.03.5 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1 ../../lib/libRDGeometryLib.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 17%] Built target RDGeometryLib
[ 17%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/Wrap/wrap_BitOps.cpp
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp:15:0:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h: In function 'double RDDataManip::EuclideanDistanceMetric(const T1&, const T2&, unsigned int) [with T1 = PySequenceHolder<double>; T2 = PySequenceHolder<double>]':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h:67:9: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
T res = python::extract<T>(d_seq[which]);
^~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h:67:9: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
T res = python::extract<T>(d_seq[which]);
^~~
[ 17%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 17%] Built target rdMetricMatrixCalc
[ 18%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/Wrap/wrap_FPB.cpp
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/SimDivPickers/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSimDivPickers
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 18%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/SimDivPickers/Wrap/MaxMinPicker.cpp
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/Wrap/SparseIntVect.cpp:18:0:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h: In function 'void {anonymous}::pyUpdateFromSequence(RDKit::SparseIntVect<IndexType>&, boost::python::api::object&) [with IndexType = long long int]':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h:67:9: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
T res = python::extract<T>(d_seq[which]);
^~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h: In function 'void {anonymous}::pyUpdateFromSequence(RDKit::SparseIntVect<IndexType>&, boost::python::api::object&) [with IndexType = long long unsigned int]':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h:67:9: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
T res = python::extract<T>(d_seq[which]);
^~~
[ 18%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/InfoTheory /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color=
Scanning dependencies of target InfoTheory
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 18%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/InfoTheory && /usr/bin/c++ -DInfoTheory_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/InfoBitRanker.cpp
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/SimDivPickers/Wrap/MaxMinPicker.cpp: In member function 'RDKit::INT_VECT RDPickers::MaxMinPicker::lazyPick(T&, unsigned int, unsigned int, RDKit::INT_VECT, int) const [with T = RDPickers::pyobjFunctor]':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/SimDivPickers/Wrap/MaxMinPicker.cpp:72:11: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
res = python::extract<double>(dp_obj(i, j));
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 18%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/Wrap/wrap_Utils.cpp
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /usr/include/boost/iterator/iterator_concepts.hpp:29,
from /usr/include/boost/range/concepts.hpp:20,
from /usr/include/boost/range/size_type.hpp:20,
from /usr/include/boost/range/size.hpp:21,
from /usr/include/boost/range/functions.hpp:20,
from /usr/include/boost/range/iterator_range_core.hpp:38,
from /usr/include/boost/range/iterator_range.hpp:13,
from /usr/include/boost/iostreams/traits.hpp:38,
from /usr/include/boost/iostreams/detail/call_traits.hpp:15,
from /usr/include/boost/iostreams/detail/adapter/device_adapter.hpp:22,
from /usr/include/boost/iostreams/tee.hpp:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/RDLog.h:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Invariant.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/InfoBitRanker.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/InfoBitRanker.cpp:11:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >; _Distance = int; _Tp = std::pair<double, int>; _Compare = __gnu_cxx::__ops::_Iter_comp_val<RDInfoTheory::gtDIPair>]':
/usr/include/c++/7/bits/stl_heap.h:128:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
__push_heap(_RandomAccessIterator __first,
^~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/InfoBitRanker.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/InfoBitRanker.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair<double, int>&}; _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<std::pair<double, int> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/InfoBitRanker.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/InfoBitRanker.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In member function 'double* RDInfoTheory::InfoBitRanker::getTopN(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, int>*, std::vector<std::pair<double, int> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 18%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp
[ 18%] Linking CXX shared library ../../../lib/libInfoTheory.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libInfoTheory.so.1 -o ../../../lib/libInfoTheory.so.1.2016.03.5 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libInfoTheory.so.1.2016.03.5 ../../../lib/libInfoTheory.so.1 ../../../lib/libInfoTheory.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 18%] Built target InfoTheory
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testTransforms
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
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make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 18%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/testTransforms.cpp
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
Scanning dependencies of target testGrid
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
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make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 18%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/testGrid.cpp
[ 18%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 18%] Built target cDataStructs
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
Scanning dependencies of target rdGeometry
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
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make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 18%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Wrap/Point.cpp
[ 19%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o ../../../lib/libSimDivPickers.so.1.2016.03.5 ../../../lib/libhc.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 19%] Built target rdSimDivPickers
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Alignment /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
Scanning dependencies of target Alignment
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 19%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment && /usr/bin/c++ -DAlignment_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Alignment/AlignPoints.cpp
[ 20%] Linking CXX executable testTransforms
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testTransforms.dir/testTransforms.cpp.o -o testTransforms ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 20%] Built target testTransforms
[ 20%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Wrap/UniformGrid3D.cpp
[ 20%] Linking CXX executable testGrid
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testGrid.dir/testGrid.cpp.o -o testGrid ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 20%] Built target testGrid
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Optimizer /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
Scanning dependencies of target Optimizer
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 20%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer && /usr/bin/c++ -DOptimizer_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Optimizer/BFGSOpt.cpp
[ 21%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer && /usr/bin/c++ -DOptimizer_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Optimizer/LinearSearch.cpp
[ 21%] Linking CXX shared library ../../../lib/libAlignment.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libAlignment.so.1 -o ../../../lib/libAlignment.so.1.2016.03.5 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libAlignment.so.1.2016.03.5 ../../../lib/libAlignment.so.1 ../../../lib/libAlignment.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 21%] Built target Alignment
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color=
Scanning dependencies of target GraphMol
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.cpp
[ 21%] Linking CXX shared library ../../../lib/libOptimizer.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libOptimizer.so.1 -o ../../../lib/libOptimizer.so.1.2016.03.5 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libOptimizer.so.1 ../../../lib/libOptimizer.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 21%] Built target Optimizer
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/InfoTheory/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
Scanning dependencies of target rdInfoTheory
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make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 21%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp
[ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o
[ 21%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/QueryAtom.cpp
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp
[ 21%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Wrap/rdGeometry.cpp
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/Data /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/Data /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
Scanning dependencies of target cQuantize
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 21%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/Data && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DcQuantize_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/Data/cQuantize.cpp
[ 22%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 22%] Built target rdGeometry
[ 22%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp
[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/QueryBond.cpp
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Alignment /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color=
Scanning dependencies of target testAlignment
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
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make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 22%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Alignment/testAlignment.cpp
[ 23%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/Data && /usr/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o ../../../lib/libInfoTheory.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 23%] Built target cQuantize
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Alignment/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
Scanning dependencies of target rdAlignment
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 23%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Alignment/Wrap/rdAlignment.cpp
[ 24%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o ../../../../lib/libInfoTheory.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 24%] Built target rdInfoTheory
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Optimizer /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color=
Scanning dependencies of target testOptimizer
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 24%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Optimizer/testOptimizer.cpp
[ 24%] Linking CXX executable testAlignment
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testAlignment.dir/testAlignment.cpp.o -o testAlignment ../../../lib/libAlignment.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
[ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Bond.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 24%] Built target testAlignment
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target ForceField
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/ForceField.cpp
[ 24%] Linking CXX executable testOptimizer
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/testOptimizer.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -o testOptimizer ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 24%] Built target testOptimizer
[ 24%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/AngleBend.cpp
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:16:0:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h: In function 'void RDNumeric::Alignments::GetPointsFromPythonSequence(boost::python::api::object&, RDGeom::Point3DConstPtrVect&)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h:67:9: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
T res = python::extract<T>(d_seq[which]);
^~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h:67:9: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
T res = python::extract<T>(d_seq[which]);
^~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h:67:9: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
T res = python::extract<T>(d_seq[which]);
^~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h: In function 'PyObject* RDNumeric::Alignments::AlignPointPairs(boost::python::api::object, boost::python::api::object, boost::python::api::object, bool, unsigned int)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h:67:9: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
T res = python::extract<T>(d_seq[which]);
^~~
[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolOps.cpp
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/BondStretch.cpp
[ 26%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o ../../../../lib/libAlignment.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 26%] Built target rdAlignment
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/Nonbonded.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FindRings.cpp
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.cpp
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/Inversion.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/boost/graph/adjacency_list.hpp:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h:26,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/GraphMol.h:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolOps.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/boost/graph/adjacency_list.hpp:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h:26,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/GraphMol.h:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolOps.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'std::map<T, boost::shared_ptr<RDKit::ROMol> > RDKit::MolOps::getMolFragsWithQuery(const RDKit::ROMol&, T (*)(const RDKit::ROMol&, const RDKit::Atom*), bool, const std::vector<T>*, bool) [with T = std::__cxx11::basic_string<char>]':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'std::map<T, boost::shared_ptr<RDKit::ROMol> > RDKit::MolOps::getMolFragsWithQuery(const RDKit::ROMol&, T (*)(const RDKit::ROMol&, const RDKit::Atom*), bool, const std::vector<T>*, bool) [with T = int]':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 26%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/TorsionAngle.cpp
/usr/include/c++/7/bits/stl_vector.h: In function 'std::map<T, boost::shared_ptr<RDKit::ROMol> > RDKit::MolOps::getMolFragsWithQuery(const RDKit::ROMol&, T (*)(const RDKit::ROMol&, const RDKit::Atom*), bool, const std::vector<T>*, bool) [with T = unsigned int]':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'std::vector<boost::shared_ptr<RDKit::ROMol> > RDKit::MolOps::getMolFrags(const RDKit::ROMol&, bool, RDKit::INT_VECT*, RDKit::VECT_INT_VECT*, bool)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RWMol.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/boost/graph/adjacency_list.hpp:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h:26,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.cpp:17:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PeriodicTable.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/boost/graph/adjacency_list.hpp:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h:26,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.cpp:17:
/usr/include/c++/7/bits/stl_vector.h: In member function 'unsigned int RDKit::ROMol::addAtom(RDKit::Atom*, bool, bool)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 27%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/DistanceConstraint.cpp
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/atomic_data.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PeriodicTable.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PeriodicTable.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const RDKit::atomicData&}; _Tp = RDKit::atomicData; _Alloc = std::allocator<RDKit::atomicData>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<RDKit::atomicData>::iterator {aka __gnu_cxx::__normal_iterator<RDKit::atomicData*, std::vector<RDKit::atomicData> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PeriodicTable.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PeriodicTable.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::PeriodicTable::PeriodicTable()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::atomicData*, std::vector<RDKit::atomicData> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/boost/graph/adjacency_list.hpp:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h:26,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RWMol.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RWMol.cpp:17:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/boost/graph/adjacency_list.hpp:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h:26,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RWMol.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RWMol.cpp:17:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 27%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/QueryOps.cpp
/usr/include/c++/7/bits/stl_vector.h: In member function 'unsigned int RDKit::RWMol::addAtom(bool)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'void RDKit::RWMol::insertMol(const RDKit::ROMol&)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/AngleConstraint.cpp
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolPickler.cpp
[ 28%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Canon.cpp
[ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/TorsionConstraint.cpp
[ 28%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/PositionConstraint.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolPickler.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolPickler.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In static member function 'static void RDKit::MolPickler::_addAtomFromPickleV1(std::istream&, RDKit::ROMol*)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 29%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/AtomIterators.cpp
[ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/Params.cpp
[ 29%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/AngleBend.cpp
[ 30%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/BondStretch.cpp
[ 30%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/StretchBend.cpp
[ 30%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/OopBend.cpp
[ 30%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/TorsionAngle.cpp
[ 30%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/BondIterators.cpp
[ 31%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Nonbonded.cpp
[ 31%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/DistanceConstraint.cpp
[ 31%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/AngleConstraint.cpp
[ 31%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Aromaticity.cpp
[ 31%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/TorsionConstraint.cpp
[ 31%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Kekulize.cpp
[ 31%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/PositionConstraint.cpp
[ 32%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Params.cpp
[ 32%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDiscriminators.cpp
[ 33%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ConjugHybrid.cpp
[ 33%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/AddHs.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Params.h:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Params.cpp:17:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ForceFields::MMFF::MMFFPBCI&}; _Tp = ForceFields::MMFF::MMFFPBCI; _Alloc = std::allocator<ForceFields::MMFF::MMFFPBCI>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<ForceFields::MMFF::MMFFPBCI>::iterator {aka __gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFPBCI*, std::vector<ForceFields::MMFF::MMFFPBCI> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ForceFields::MMFF::MMFFChg&}; _Tp = ForceFields::MMFF::MMFFChg; _Alloc = std::allocator<ForceFields::MMFF::MMFFChg>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<ForceFields::MMFF::MMFFChg>::iterator {aka __gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFChg*, std::vector<ForceFields::MMFF::MMFFChg> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ForceFields::MMFF::MMFFBond&}; _Tp = ForceFields::MMFF::MMFFBond; _Alloc = std::allocator<ForceFields::MMFF::MMFFBond>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<ForceFields::MMFF::MMFFBond>::iterator {aka __gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFBond*, std::vector<ForceFields::MMFF::MMFFBond> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ForceFields::MMFF::MMFFHerschbachLaurie&}; _Tp = ForceFields::MMFF::MMFFHerschbachLaurie; _Alloc = std::allocator<ForceFields::MMFF::MMFFHerschbachLaurie>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<ForceFields::MMFF::MMFFHerschbachLaurie>::iterator {aka __gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFHerschbachLaurie*, std::vector<ForceFields::MMFF::MMFFHerschbachLaurie> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ForceFields::MMFF::MMFFCovRadPauEle&}; _Tp = ForceFields::MMFF::MMFFCovRadPauEle; _Alloc = std::allocator<ForceFields::MMFF::MMFFCovRadPauEle>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<ForceFields::MMFF::MMFFCovRadPauEle>::iterator {aka __gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFCovRadPauEle*, std::vector<ForceFields::MMFF::MMFFCovRadPauEle> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ForceFields::MMFF::MMFFAngle&}; _Tp = ForceFields::MMFF::MMFFAngle; _Alloc = std::allocator<ForceFields::MMFF::MMFFAngle>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<ForceFields::MMFF::MMFFAngle>::iterator {aka __gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFAngle*, std::vector<ForceFields::MMFF::MMFFAngle> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ForceFields::MMFF::MMFFStbn&}; _Tp = ForceFields::MMFF::MMFFStbn; _Alloc = std::allocator<ForceFields::MMFF::MMFFStbn>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<ForceFields::MMFF::MMFFStbn>::iterator {aka __gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFStbn*, std::vector<ForceFields::MMFF::MMFFStbn> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ForceFields::MMFF::MMFFOop&}; _Tp = ForceFields::MMFF::MMFFOop; _Alloc = std::allocator<ForceFields::MMFF::MMFFOop>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<ForceFields::MMFF::MMFFOop>::iterator {aka __gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFOop*, std::vector<ForceFields::MMFF::MMFFOop> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ForceFields::MMFF::MMFFTor&}; _Tp = ForceFields::MMFF::MMFFTor; _Alloc = std::allocator<ForceFields::MMFF::MMFFTor>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<ForceFields::MMFF::MMFFTor>::iterator {aka __gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFTor*, std::vector<ForceFields::MMFF::MMFFTor> >}' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ForceFields::MMFF::MMFFVdW&}; _Tp = ForceFields::MMFF::MMFFVdW; _Alloc = std::allocator<ForceFields::MMFF::MMFFVdW>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<ForceFields::MMFF::MMFFVdW>::iterator {aka __gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFVdW*, std::vector<ForceFields::MMFF::MMFFVdW> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Params.h:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Params.cpp:17:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'ForceFields::MMFF::MMFFPBCICollection::MMFFPBCICollection(std::__cxx11::string)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFPBCI*, std::vector<ForceFields::MMFF::MMFFPBCI> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor 'ForceFields::MMFF::MMFFChgCollection::MMFFChgCollection(std::__cxx11::string)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFChg*, std::vector<ForceFields::MMFF::MMFFChg> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor 'ForceFields::MMFF::MMFFBondCollection::MMFFBondCollection(std::__cxx11::string)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFBond*, std::vector<ForceFields::MMFF::MMFFBond> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor 'ForceFields::MMFF::MMFFBndkCollection::MMFFBndkCollection(std::__cxx11::string)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFBond*, std::vector<ForceFields::MMFF::MMFFBond> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor 'ForceFields::MMFF::MMFFHerschbachLaurieCollection::MMFFHerschbachLaurieCollection(std::__cxx11::string)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFHerschbachLaurie*, std::vector<ForceFields::MMFF::MMFFHerschbachLaurie> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor 'ForceFields::MMFF::MMFFCovRadPauEleCollection::MMFFCovRadPauEleCollection(std::__cxx11::string)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFCovRadPauEle*, std::vector<ForceFields::MMFF::MMFFCovRadPauEle> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor 'ForceFields::MMFF::MMFFAngleCollection::MMFFAngleCollection(std::__cxx11::string)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFAngle*, std::vector<ForceFields::MMFF::MMFFAngle> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 33%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Matrices.cpp
/usr/include/c++/7/bits/stl_vector.h: In constructor 'ForceFields::MMFF::MMFFStbnCollection::MMFFStbnCollection(std::__cxx11::string)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFStbn*, std::vector<ForceFields::MMFF::MMFFStbn> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 33%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Chirality.cpp
/usr/include/c++/7/bits/stl_vector.h: In constructor 'ForceFields::MMFF::MMFFOopCollection::MMFFOopCollection(bool, std::__cxx11::string)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFOop*, std::vector<ForceFields::MMFF::MMFFOop> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor 'ForceFields::MMFF::MMFFTorCollection::MMFFTorCollection(bool, std::__cxx11::string)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFTor*, std::vector<ForceFields::MMFF::MMFFTor> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor 'ForceFields::MMFF::MMFFVdWCollection::MMFFVdWCollection(std::__cxx11::string)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<ForceFields::MMFF::MMFFVdW*, std::vector<ForceFields::MMFF::MMFFVdW> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 33%] Linking CXX shared library ../../lib/libForceField.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libForceField.so.1 -o ../../lib/libForceField.so.1.2016.03.5 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o ../../lib/libOptimizer.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libForceField.so.1.2016.03.5 ../../lib/libForceField.so.1 ../../lib/libForceField.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 33%] Built target ForceField
[ 34%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RingInfo.cpp
[ 34%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Conformer.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/AddHs.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/AddHs.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 34%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Renumber.cpp
[ 34%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/AdjustQuery.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Conformer.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Conformer.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const RDGeom::Point3D&}; _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Conformer.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Conformer.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In copy constructor 'RDKit::Conformer::Conformer(const RDKit::Conformer&)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 34%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Resonance.cpp
[ 35%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/new_canon.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/boost/graph/adjacency_list.hpp:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h:26,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/GraphMol.h:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Renumber.cpp:10:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/boost/graph/adjacency_list.hpp:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h:26,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/GraphMol.h:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Renumber.cpp:10:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'RDKit::ROMol* RDKit::MolOps::renumberAtoms(const RDKit::ROMol&, const std::vector<unsigned int>&)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 35%] Linking CXX shared library ../../lib/libGraphMol.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libGraphMol.so.1 -o ../../lib/libGraphMol.so.1.2016.03.5 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o ../../lib/libRDGeometryLib.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libGraphMol.so.1 ../../lib/libGraphMol.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 35%] Built target GraphMol
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolTransforms /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Substruct /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
Scanning dependencies of target MolTransforms
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
Scanning dependencies of target SubstructMatch
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
Scanning dependencies of target Depictor
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 35%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms && /usr/bin/c++ -DMolTransforms_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolTransforms/MolTransforms.cpp
[ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o
[ 35%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/RDDepictor.cpp
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Substruct/SubstructMatch.cpp
Scanning dependencies of target SmilesParse
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/SmilesParse.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/RDDepictor.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/RDDepictor.cpp:12:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/RDDepictor.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/RDDepictor.cpp:12:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'unsigned int RDDepict::copyCoordinate(RDKit::ROMol&, std::__cxx11::list<RDDepict::EmbeddedFrag>&, bool)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'unsigned int RDDepict::compute2DCoords(RDKit::ROMol&, const INT_POINT2D_MAP*, bool, bool, unsigned int, unsigned int, int, bool)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/EmbeddedFrag.cpp
[ 35%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/SmilesParseOps.cpp
[ 35%] Linking CXX shared library ../../../lib/libMolTransforms.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libMolTransforms.so.1 -o ../../../lib/libMolTransforms.so.1.2016.03.5 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libMolTransforms.so.1 ../../../lib/libMolTransforms.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 35%] Built target MolTransforms
[ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/DepictUtils.cpp
In file included from /usr/include/c++/7/map:60:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/EmbeddedFrag.cpp:11:
/usr/include/c++/7/bits/stl_tree.h: In member function 'std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = unsigned int; _Val = std::pair<const unsigned int, RDDepict::EmbeddedAtom>; _KeyOfValue = std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >]':
/usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const unsigned int&>, std::tuple<>}; _Key = unsigned int; _Val = std::pair<const unsigned int, RDDepict::EmbeddedAtom>; _KeyOfValue = std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/EmbeddedFrag.cpp:11:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = unsigned int; _Tp = RDDepict::EmbeddedAtom; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >]':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'void RDDepict::EmbeddedFrag::reflectIfNecessaryThirdPt(RDDepict::EmbeddedFrag&, unsigned int, unsigned int, unsigned int)':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'void RDDepict::EmbeddedFrag::reflectIfNecessaryDensity(RDDepict::EmbeddedFrag&, unsigned int, unsigned int)':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'RDGeom::Transform2D RDDepict::EmbeddedFrag::computeTwoAtomTrans(unsigned int, unsigned int, const INT_POINT2D_MAP&)':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'void RDDepict::EmbeddedFrag::updateNewNeighs(unsigned int)':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In constructor 'RDDepict::EmbeddedFrag::EmbeddedFrag(unsigned int, const RDKit::ROMol*)':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/map:60:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/EmbeddedFrag.cpp:11:
/usr/include/c++/7/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<unsigned int&&>, std::tuple<>}; _Key = unsigned int; _Val = std::pair<const unsigned int, RDDepict::EmbeddedAtom>; _KeyOfValue = std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/EmbeddedFrag.cpp:11:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = unsigned int; _Tp = RDDepict::EmbeddedAtom; _Compare = std::less<unsigned int>; _Alloc = std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'void RDDepict::EmbeddedFrag::computeNbrsAndAng(unsigned int, const INT_VECT&)':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'void RDDepict::EmbeddedFrag::permuteBonds(unsigned int, unsigned int, unsigned int)':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'void RDDepict::EmbeddedFrag::initFromRingCoords(const INT_VECT&, const INT_POINT2D_MAP&)':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In constructor 'RDDepict::EmbeddedFrag::EmbeddedFrag(const RDKit::ROMol*, const INT_POINT2D_MAP&)':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
[ 35%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Substruct/SubstructUtils.cpp
/usr/include/c++/7/bits/stl_map.h: In member function 'void RDDepict::EmbeddedFrag::reflectIfNecessaryCisTrans(RDDepict::EmbeddedFrag&, unsigned int, unsigned int, unsigned int)':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'RDGeom::Transform2D RDDepict::EmbeddedFrag::computeOneAtomTrans(unsigned int, const RDDepict::EmbeddedFrag&)':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'void RDDepict::EmbeddedFrag::mergeRing(const RDDepict::EmbeddedFrag&, unsigned int, const INT_VECT&)':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'void RDDepict::EmbeddedFrag::addAtomToAtomWithAng(unsigned int, unsigned int)':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'void RDDepict::EmbeddedFrag::mergeFragsWithComm(std::__cxx11::list<RDDepict::EmbeddedFrag>&)':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In member function 'void RDDepict::EmbeddedFrag::expandEfrag(RDKit::INT_LIST&, std::__cxx11::list<RDDepict::EmbeddedFrag>&)':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/DepictUtils.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const RDGeom::Point2D&}; _Tp = RDGeom::Point2D; _Alloc = std::allocator<RDGeom::Point2D>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<RDGeom::Point2D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point2D*, std::vector<RDGeom::Point2D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_map.h: In member function 'void RDDepict::EmbeddedFrag::removeCollisionsShortenBonds()':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/DepictUtils.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In function 'RDDepict::INT_PAIR_VECT RDDepict::findBondsPairsToPermuteDeg4(const RDGeom::Point2D&, const INT_VECT&, const VECT_C_POINT&)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point2D*, std::vector<RDGeom::Point2D> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_map.h: In member function 'void RDDepict::EmbeddedFrag::randomSampleFlipsAndPermutations(unsigned int, unsigned int, int, const DOUBLE_SMART_PTR*, double, bool)':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<unsigned int, std::pair<const unsigned int, RDDepict::EmbeddedAtom>, std::_Select1st<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >, std::less<unsigned int>, std::allocator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const unsigned int, RDDepict::EmbeddedAtom> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
[ 36%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/SmilesWrite.cpp
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend
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cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
Scanning dependencies of target PartialCharges
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make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 36%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges && /usr/bin/c++ -DPartialCharges_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges/GasteigerCharges.cpp
[ 37%] Linking CXX shared library ../../../lib/libDepictor.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libDepictor.so.1 -o ../../../lib/libDepictor.so.1.2016.03.5 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libDepictor.so.1 ../../../lib/libDepictor.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
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[ 37%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges && /usr/bin/c++ -DPartialCharges_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges/GasteigerParams.cpp
[ 37%] Linking CXX shared library ../../../lib/libSubstructMatch.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libSubstructMatch.so.1 -o ../../../lib/libSubstructMatch.so.1.2016.03.5 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1 ../../../lib/libSubstructMatch.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
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make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
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cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target Subgraphs
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 37%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs/Subgraphs.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges/GasteigerCharges.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges/GasteigerCharges.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges/GasteigerCharges.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges/GasteigerCharges.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In function 'void RDKit::computeGasteigerCharges(const RDKit::ROMol&, std::vector<double>&, int, bool)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolTransforms/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolTransforms
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 37%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp
[ 37%] Linking CXX shared library ../../../lib/libPartialCharges.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libPartialCharges.so.1 -o ../../../lib/libPartialCharges.so.1.2016.03.5 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libPartialCharges.so.1 ../../../lib/libPartialCharges.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 37%] Built target PartialCharges
[ 37%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.cpp
[ 37%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/SmartsWrite.cpp
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target ShapeHelpers
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 38%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs/Subgraphs.h:31,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs/Subgraphs.h:31,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'RDKit::ROMol* RDKit::Subgraphs::pathToSubmol(const RDKit::ROMol&, const PATH_TYPE&, bool, RDKit::INT_MAP_INT&)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 39%] Linking CXX shared library ../../../lib/libSubgraphs.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libSubgraphs.so.1 -o ../../../lib/libSubgraphs.so.1.2016.03.5 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1 ../../../lib/libSubgraphs.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 39%] Built target Subgraphs
[ 39%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target MolCatalog
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 40%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp
[ 40%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o ../../../../lib/libMolTransforms.so.1.2016.03.5 ../../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 40%] Built target rdMolTransforms
[ 40%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolCatalog/MolCatalogParams.cpp
[ 40%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/smarts.tab.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In function 'std::vector<double> RDKit::MolShapes::getConfDimensions(const RDKit::Conformer&, double, const RDGeom::Point3D*, bool)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 40%] Linking CXX shared library ../../../lib/libShapeHelpers.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libShapeHelpers.so.1 -o ../../../lib/libShapeHelpers.so.1.2016.03.5 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libShapeHelpers.so.1.2016.03.5 ../../../lib/libShapeHelpers.so.1 ../../../lib/libShapeHelpers.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 40%] Built target ShapeHelpers
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target SLNParse
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 41%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse/SLNParse.cpp
[ 41%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse/SLNAttribs.cpp
smarts.yy: In function 'void yysmarts_error(const char*, std::vector<RDKit::RWMol*>*, void*, const char*)':
smarts.yy:25:29: warning: unused parameter 'input' [-Wunused-parameter]
smarts.yy:26:46: warning: unused parameter 'ms' [-Wunused-parameter]
smarts.yy:27:9: warning: unused parameter 'scanner' [-Wunused-parameter]
[ 41%] Linking CXX shared library ../../../lib/libMolCatalog.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libMolCatalog.so.1 -o ../../../lib/libMolCatalog.so.1.2016.03.5 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libCatalogs.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolCatalog.so.1.2016.03.5 ../../../lib/libMolCatalog.so.1 ../../../lib/libMolCatalog.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 41%] Built target MolCatalog
[ 41%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse/sln.tab.cpp
[ 41%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/smiles.tab.cpp
sln.yy: In function 'void yysln_error(const char*, std::vector<RDKit::RWMol*>*, bool, void*, const char*)':
sln.yy:60:43: warning: unused parameter 'ms' [-Wunused-parameter]
sln.yy:60:51: warning: unused parameter 'doQ' [-Wunused-parameter]
sln.yy:61:13: warning: unused parameter 'scanner' [-Wunused-parameter]
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
Scanning dependencies of target rdqueries
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 41%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/rdqueries.cpp
[ 41%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/Queries.cpp
smiles.yy: In function 'void yysmiles_error(const char*, std::vector<RDKit::RWMol*>*, std::__cxx11::list<unsigned int>*, void*, const char*)':
smiles.yy:38:29: warning: unused parameter 'input' [-Wunused-parameter]
smiles.yy:40:42: warning: unused parameter 'branchPoints' [-Wunused-parameter]
smiles.yy:41:9: warning: unused parameter 'scanner' [-Wunused-parameter]
[ 41%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse/lex.yysln.cpp
[ 41%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/lex.yysmarts.cpp
/Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'void yy_fatal_error(const char*, yyscan_t)':
/Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2585:58: warning: unused parameter 'yyscanner' [-Wunused-parameter]
/Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'void* yysln_alloc(yy_size_t, yyscan_t)':
/Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2917:47: warning: unused parameter 'yyscanner' [-Wunused-parameter]
/Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'void* yysln_realloc(void*, yy_size_t, yyscan_t)':
/Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2922:62: warning: unused parameter 'yyscanner' [-Wunused-parameter]
/Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'void yysln_free(void*, yyscan_t)':
/Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2934:40: warning: unused parameter 'yyscanner' [-Wunused-parameter]
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ChemicalFeatures/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ChemicalFeatures/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target rdChemicalFeatures
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 41%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp
[ 41%] Linking CXX shared library ../../../lib/libSLNParse.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libSLNParse.so.1 -o ../../../lib/libSLNParse.so.1.2016.03.5 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 -lboost_regex ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSLNParse.so.1.2016.03.5 ../../../lib/libSLNParse.so.1 ../../../lib/libSLNParse.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 41%] Built target SLNParse
[ 41%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp
[ 42%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/lex.yysmiles.cpp
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target MolAlign
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 42%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/c++ -DMolAlign_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/AlignMolecules.cpp
/Users/landrgr1/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: In function 'void yy_fatal_error(const char*, yyscan_t)':
/Users/landrgr1/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:2240:58: warning: unused parameter 'yyscanner' [-Wunused-parameter]
/Users/landrgr1/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: In function 'void* yysmiles_alloc(yy_size_t, yyscan_t)':
/Users/landrgr1/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:2572:50: warning: unused parameter 'yyscanner' [-Wunused-parameter]
/Users/landrgr1/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: In function 'void* yysmiles_realloc(void*, yy_size_t, yyscan_t)':
/Users/landrgr1/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:2577:65: warning: unused parameter 'yyscanner' [-Wunused-parameter]
/Users/landrgr1/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: In function 'void yysmiles_free(void*, yyscan_t)':
/Users/landrgr1/RDKit_git/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:2589:43: warning: unused parameter 'yyscanner' [-Wunused-parameter]
[ 42%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 42%] Built target rdqueries
[ 42%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/c++ -DMolAlign_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp
[ 42%] Linking CXX shared library ../../../lib/libSmilesParse.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libSmilesParse.so.1 -o ../../../lib/libSmilesParse.so.1.2016.03.5 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1 ../../../lib/libSmilesParse.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 42%] Built target SmilesParse
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
Scanning dependencies of target rdPartialCharges
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 42%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp
[ 43%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../../lib/libChemicalFeatures.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 43%] Built target rdChemicalFeatures
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target MolChemicalFeatures
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 43%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Vector.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Matrix.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/SquareMatrix.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Transform3D.h:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/AlignMolecules.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/AlignMolecules.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdShapeHelpers
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 44%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp
[ 44%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp
[ 44%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o ../../../../lib/libPartialCharges.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 44%] Built target rdPartialCharges
[ 45%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp
[ 45%] Linking CXX shared library ../../../lib/libMolAlign.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libMolAlign.so.1 -o ../../../lib/libMolAlign.so.1.2016.03.5 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libAlignment.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolAlign.so.1.2016.03.5 ../../../lib/libMolAlign.so.1 ../../../lib/libMolAlign.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 45%] Built target MolAlign
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ReducedGraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target ReducedGraphs
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 45%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp
[ 45%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Conformer.h:13:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h:35,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h: In function 'boost::python::tuple RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+16).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
: Point(other), x(other.x), y(other.y), z(other.z) {}
~~~~~~^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+16).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
: Point(other), x(other.x), y(other.y), z(other.z) {}
~~~~~~^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+16).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
: Point(other), x(other.x), y(other.y), z(other.z) {}
~~~~~~^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+16).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
: Point(other), x(other.x), y(other.y), z(other.z) {}
~~~~~~^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+16).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
: Point(other), x(other.x), y(other.y), z(other.z) {}
~~~~~~^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+16).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
: Point(other), x(other.x), y(other.y), z(other.z) {}
~~~~~~^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+16).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
: Point(other), x(other.x), y(other.y), z(other.z) {}
~~~~~~^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+16).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
: Point(other), x(other.x), y(other.y), z(other.z) {}
~~~~~~^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+16).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
: Point(other), x(other.x), y(other.y), z(other.z) {}
~~~~~~^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:55:31: warning: '*((void*)(&<anonymous>)+16).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
: Point(other), x(other.x), y(other.y), z(other.z) {}
~~~~~~^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:55:43: warning: '*((void*)(&<anonymous>)+16).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized]
: Point(other), x(other.x), y(other.y), z(other.z) {}
~~~~~~^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:55:55: warning: '*((void*)(&<anonymous>)+16).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized]
: Point(other), x(other.x), y(other.y), z(other.z) {}
~~~~~~^
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target testSLNParse
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 45%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse/test.cpp
[ 45%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o ../../../../lib/libShapeHelpers.so.1.2016.03.5 ../../../../lib/libMolTransforms.so.1.2016.03.5 ../../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 45%] Built target rdShapeHelpers
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSLNParse
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 45%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.h:16,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc:630:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
[ 45%] Linking CXX shared library ../../../lib/libReducedGraphs.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libReducedGraphs.so.1 -o ../../../lib/libReducedGraphs.so.1.2016.03.5 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libReducedGraphs.so.1.2016.03.5 ../../../lib/libReducedGraphs.so.1 ../../../lib/libReducedGraphs.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 45%] Built target ReducedGraphs
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target ForceFieldHelpers
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 45%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.h:16,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In function 'RDKit::MolChemicalFeatureDef* RDKit::Local::parseFeatureDef(std::istream&, const string&, unsigned int&, const std::map<std::__cxx11::basic_string<char>, std::__cxx11::basic_string<char> >&)':
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
_M_range_insert(__pos, __first, __last,
~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
std::__iterator_category(__first));
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:1406:19: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
[ 45%] Linking CXX shared library ../../../lib/libMolChemicalFeatures.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libMolChemicalFeatures.so.1 -o ../../../lib/libMolChemicalFeatures.so.1.2016.03.5 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolChemicalFeatures.so.1.2016.03.5 ../../../lib/libMolChemicalFeatures.so.1 ../../../lib/libMolChemicalFeatures.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 45%] Built target MolChemicalFeatures
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
Scanning dependencies of target FileParsers
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/Mol2FileParser.cpp
[ 45%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o ../../../../lib/libSLNParse.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization -lboost_regex ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 45%] Built target rdSLNParse
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolqueryTest
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 45%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/querytest.cpp
[ 45%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/FileParsers.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/Mol2FileParser.cpp:37:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/FileParsers.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/Mol2FileParser.cpp:37:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/FileParsers.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/Mol2FileParser.cpp:37:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const RDGeom::Point3D&}; _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/FileParsers.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/Mol2FileParser.cpp:37:
/usr/include/c++/7/bits/stl_vector.h: In function 'RDKit::RWMol* RDKit::Mol2DataStreamToMol(std::istream*, bool, bool, RDKit::Mol2Type)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 46%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/MolFileParser.cpp
[ 46%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp
[ 47%] Linking CXX executable testSLNParse
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testSLNParse.dir/test.cpp.o -o testSLNParse ../../../lib/libSLNParse.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 -lboost_regex ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 47%] Built target testSLNParse
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolcpTest
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 47%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/cptest.cpp
[ 47%] Linking CXX executable graphmolqueryTest
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -o graphmolqueryTest ../../lib/libSubstructMatch.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 47%] Built target graphmolqueryTest
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestCanon
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 47%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/testCanon.cpp
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp: In member function 'void RDKit::MMFF::MMFFMolProperties::setMMFFHydrogenType(const RDKit::Atom*)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp:2218:13: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (isHOS) {
^~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp:2225:11: note: here
default:
^~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/cptest.cpp:10:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/cptest.cpp:10:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 48%] Linking CXX executable graphmolcpTest
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -o graphmolcpTest ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 48%] Built target graphmolcpTest
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolIterTest
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 49%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/itertest.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/FileParsers.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/MolFileParser.cpp:12:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/FileParsers.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/MolFileParser.cpp:12:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 49%] Linking CXX executable graphmoltestCanon
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -o graphmoltestCanon ../../lib/libSubstructMatch.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 49%] Built target graphmoltestCanon
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolMemTest1
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 49%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/memtest1.cpp
[ 50%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp
/usr/include/c++/7/bits/stl_vector.h: In function 'bool RDKit::FileParserUtils::ParseV2000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'void RDKit::{anonymous}::ParseV3000AtomBlock(std::istream*, unsigned int&, unsigned int, RDKit::RWMol*, RDKit::Conformer*)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 50%] Linking CXX executable graphmolIterTest
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -o graphmolIterTest ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 50%] Built target graphmolIterTest
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemTransforms /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target ChemTransforms
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 50%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DChemTransforms_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.cpp
[ 50%] Linking CXX executable graphmolMemTest1
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -o graphmolMemTest1 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 50%] Built target graphmolMemTest1
[ 51%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DChemTransforms_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemTransforms/MolFragmenter.cpp
[ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/MolFileStereochem.cpp
[ 51%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 51%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp
/usr/include/c++/7/bits/stl_vector.h: In function 'void RDKit::{anonymous}::updateSubMolConfs(const RDKit::ROMol&, RDKit::RWMol&, boost::dynamic_bitset<>&)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'RDKit::ROMol* RDKit::combineMols(const RDKit::ROMol&, const RDKit::ROMol&, RDGeom::Point3D)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/boost/graph/adjacency_list.hpp:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h:26,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemTransforms/MolFragmenter.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemTransforms/MolFragmenter.cpp:12:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'RDKit::ROMol* RDKit::replaceCore(const RDKit::ROMol&, const RDKit::ROMol&, bool, bool, bool)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/boost/graph/adjacency_list.hpp:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h:26,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemTransforms/MolFragmenter.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemTransforms/MolFragmenter.cpp:12:
/usr/include/c++/7/bits/stl_vector.h: In function 'RDKit::ROMol* RDKit::MolFragmenter::fragmentOnBonds(const RDKit::ROMol&, const std::vector<unsigned int>&, bool, const std::vector<std::pair<unsigned int, unsigned int> >*, const std::vector<RDKit::Bond::BondType>*, std::vector<unsigned int>*)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/MolFileWriter.cpp
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target smaTest1
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 51%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/smatest.cpp
[ 51%] Linking CXX shared library ../../../lib/libChemTransforms.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libChemTransforms.so.1 -o ../../../lib/libChemTransforms.so.1.2016.03.5 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1 ../../../lib/libChemTransforms.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 51%] Built target ChemTransforms
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target Fingerprints
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 51%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/Fingerprints.cpp
In file included from /usr/include/c++/7/algorithm:62:0,
from /usr/include/boost/iterator/iterator_concepts.hpp:29,
from /usr/include/boost/range/concepts.hpp:20,
from /usr/include/boost/range/size_type.hpp:20,
from /usr/include/boost/range/size.hpp:21,
from /usr/include/boost/range/functions.hpp:20,
from /usr/include/boost/range/iterator_range_core.hpp:38,
from /usr/include/boost/range/iterator_range.hpp:13,
from /usr/include/boost/iostreams/traits.hpp:38,
from /usr/include/boost/iostreams/detail/call_traits.hpp:15,
from /usr/include/boost/iostreams/detail/adapter/device_adapter.hpp:22,
from /usr/include/boost/iostreams/tee.hpp:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/RDLog.h:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Invariant.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/FileParsers.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/MolFileWriter.cpp:14:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<Rankers::pairLess<unsigned int, RDGeom::Point3D> >]':
/usr/include/c++/7/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >' changed in GCC 7.1
__unguarded_linear_insert(_RandomAccessIterator __last,
^~~~~~~~~~~~~~~~~~~~~~~~~
[ 51%] Linking CXX shared library ../../../lib/libForceFieldHelpers.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libForceFieldHelpers.so.1 -o ../../../lib/libForceFieldHelpers.so.1.2016.03.5 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libForceField.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../lib/libForceFieldHelpers.so.1 ../../../lib/libForceFieldHelpers.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 51%] Built target ForceFieldHelpers
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubgraphs1
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<Rankers::pairLess<unsigned int, RDGeom::Point3D> >]':
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >' changed in GCC 7.1
__insertion_sort(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >' changed in GCC 7.1
[ 52%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs/test1.cpp
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/string:40,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Invariant.h:16,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/FileParsers.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/MolFileWriter.cpp:14:
/usr/include/c++/7/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >; _ForwardIterator2 = __gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >]':
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >' changed in GCC 7.1
iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b)
^~~~~~~~~
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >' changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /usr/include/boost/iterator/iterator_concepts.hpp:29,
from /usr/include/boost/range/concepts.hpp:20,
from /usr/include/boost/range/size_type.hpp:20,
from /usr/include/boost/range/size.hpp:21,
from /usr/include/boost/range/functions.hpp:20,
from /usr/include/boost/range/iterator_range_core.hpp:38,
from /usr/include/boost/range/iterator_range.hpp:13,
from /usr/include/boost/iostreams/traits.hpp:38,
from /usr/include/boost/iostreams/detail/call_traits.hpp:15,
from /usr/include/boost/iostreams/detail/adapter/device_adapter.hpp:22,
from /usr/include/boost/iostreams/tee.hpp:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/RDLog.h:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Invariant.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/FileParsers.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/MolFileWriter.cpp:14:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >; _Distance = int; _Tp = std::pair<unsigned int, RDGeom::Point3D>; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<Rankers::pairLess<unsigned int, RDGeom::Point3D> >]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /usr/include/boost/iterator/iterator_concepts.hpp:29,
from /usr/include/boost/range/concepts.hpp:20,
from /usr/include/boost/range/size_type.hpp:20,
from /usr/include/boost/range/size.hpp:21,
from /usr/include/boost/range/functions.hpp:20,
from /usr/include/boost/range/iterator_range_core.hpp:38,
from /usr/include/boost/range/iterator_range.hpp:13,
from /usr/include/boost/iostreams/traits.hpp:38,
from /usr/include/boost/iostreams/detail/call_traits.hpp:15,
from /usr/include/boost/iostreams/detail/adapter/device_adapter.hpp:22,
from /usr/include/boost/iostreams/tee.hpp:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/RDLog.h:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Invariant.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/FileParsers.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/MolFileWriter.cpp:14:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<Rankers::pairLess<unsigned int, RDGeom::Point3D> >]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:84:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >' changed in GCC 7.1
std::iter_swap(__result, __b);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:86:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >' changed in GCC 7.1
std::iter_swap(__result, __c);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:88:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >' changed in GCC 7.1
std::iter_swap(__result, __a);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In function 'void RDKit::GetMolFileAtomProperties(const RDKit::Atom*, const RDKit::Conformer*, int&, int&, unsigned int&, double&, double&, double&)':
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >' changed in GCC 7.1
std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<unsigned int, RDGeom::Point3D>*, std::vector<std::pair<unsigned int, RDGeom::Point3D> > >' changed in GCC 7.1
std::__insertion_sort(__first, __last, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /usr/include/boost/iterator/iterator_concepts.hpp:29,
from /usr/include/boost/range/concepts.hpp:20,
from /usr/include/boost/range/size_type.hpp:20,
from /usr/include/boost/range/size.hpp:21,
from /usr/include/boost/range/functions.hpp:20,
from /usr/include/boost/range/iterator_range_core.hpp:38,
from /usr/include/boost/range/iterator_range.hpp:13,
from /usr/include/boost/iostreams/traits.hpp:38,
from /usr/include/boost/iostreams/detail/call_traits.hpp:15,
from /usr/include/boost/iostreams/detail/adapter/device_adapter.hpp:22,
from /usr/include/boost/iostreams/tee.hpp:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/RDLog.h:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Invariant.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/Fingerprints.cpp:12:
/usr/include/c++/7/bits/stl_algo.h: In function '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, std::random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val<const unsigned int>]':
/usr/include/c++/7/bits/stl_algo.h:112:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__find_if(_RandomAccessIterator __first, _RandomAccessIterator __last,
^~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:112:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/Fingerprints.cpp:12:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator {aka __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp
In file included from /usr/include/c++/7/algorithm:62:0,
from /usr/include/boost/iterator/iterator_concepts.hpp:29,
from /usr/include/boost/range/concepts.hpp:20,
from /usr/include/boost/range/size_type.hpp:20,
from /usr/include/boost/range/size.hpp:21,
from /usr/include/boost/range/functions.hpp:20,
from /usr/include/boost/range/iterator_range_core.hpp:38,
from /usr/include/boost/range/iterator_range.hpp:13,
from /usr/include/boost/iostreams/traits.hpp:38,
from /usr/include/boost/iostreams/detail/call_traits.hpp:15,
from /usr/include/boost/iostreams/detail/adapter/device_adapter.hpp:22,
from /usr/include/boost/iostreams/tee.hpp:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/RDLog.h:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Invariant.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/Fingerprints.cpp:12:
/usr/include/c++/7/bits/stl_algo.h: In function 'RDKit::SparseIntVect<long long unsigned int>* RDKit::getUnfoldedRDKFingerprintMol(const RDKit::ROMol&, unsigned int, unsigned int, bool, bool, bool, std::vector<unsigned int>*, const std::vector<unsigned int>*, std::vector<std::vector<long long unsigned int> >*, std::map<long long unsigned int, std::vector<std::vector<int> > >*)':
/usr/include/c++/7/bits/stl_algo.h:162:43: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__iterator_category(__first));
^
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/Fingerprints.cpp:12:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 52%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/PatternFingerprints.cpp
[ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/SDMolSupplier.cpp
[ 53%] Linking CXX executable testSubgraphs1
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testSubgraphs1.dir/test1.cpp.o -o testSubgraphs1 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 53%] Linking CXX executable smaTest1
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1
[ 53%] Built target testSubgraphs1
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/smaTest1.dir/smatest.cpp.o -o smaTest1 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubgraphs2
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 53%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/External/boost-numeric-bindings -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs/test2.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 53%] Built target smaTest1
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target FilterCatalog
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 53%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/Filters.cpp
[ 53%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/MorganFingerprints.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/BadFileException.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/SDMolSupplier.cpp:12:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::fpos<__mbstate_t>&}; _Tp = std::fpos<__mbstate_t>; _Alloc = std::allocator<std::fpos<__mbstate_t> >]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<std::fpos<__mbstate_t> >::iterator {aka __gnu_cxx::__normal_iterator<std::fpos<__mbstate_t>*, std::vector<std::fpos<__mbstate_t> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/BadFileException.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/SDMolSupplier.cpp:12:
/usr/include/c++/7/bits/stl_vector.h: In member function 'unsigned int RDKit::SDMolSupplier::length()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::fpos<__mbstate_t>*, std::vector<std::fpos<__mbstate_t> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/BadFileException.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/SDMolSupplier.cpp:12:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::fpos<__mbstate_t>}; _Tp = std::fpos<__mbstate_t>; _Alloc = std::allocator<std::fpos<__mbstate_t> >]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::fpos<__mbstate_t>*, std::vector<std::fpos<__mbstate_t> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/BadFileException.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/SDMolSupplier.cpp:12:
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual RDKit::ROMol* RDKit::SDMolSupplier::next()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::fpos<__mbstate_t>*, std::vector<std::fpos<__mbstate_t> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'void RDKit::SDMolSupplier::moveTo(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::fpos<__mbstate_t>*, std::vector<std::fpos<__mbstate_t> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/SDWriter.cpp
[ 53%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterCatalog.cpp
[ 53%] Linking CXX executable testSubgraphs2
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testSubgraphs2.dir/test2.cpp.o -o testSubgraphs2 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 53%] Built target testSubgraphs2
[ 53%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp
[ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp
[ 53%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/AtomPairs.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/BadFileException.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::fpos<__mbstate_t>}; _Tp = std::fpos<__mbstate_t>; _Alloc = std::allocator<std::fpos<__mbstate_t> >]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<std::fpos<__mbstate_t> >::iterator {aka __gnu_cxx::__normal_iterator<std::fpos<__mbstate_t>*, std::vector<std::fpos<__mbstate_t> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::fpos<__mbstate_t>}; _Tp = std::fpos<__mbstate_t>; _Alloc = std::allocator<std::fpos<__mbstate_t> >]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::fpos<__mbstate_t>*, std::vector<std::fpos<__mbstate_t> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/SmilesWriter.cpp
[ 53%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.cpp
[ 54%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/MACCS.cpp
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target FragCatalog
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 55%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp
[ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/TDTMolSupplier.cpp
[ 56%] Linking CXX shared library ../../../lib/libFilterCatalog.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libFilterCatalog.so.1 -o ../../../lib/libFilterCatalog.so.1.2016.03.5 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libCatalogs.so.1.2016.03.5 -lboost_serialization ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libFilterCatalog.so.1.2016.03.5 ../../../lib/libFilterCatalog.so.1 ../../../lib/libFilterCatalog.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 56%] Built target FilterCatalog
[ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/TDTWriter.cpp
[ 57%] Linking CXX shared library ../../../lib/libFingerprints.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libFingerprints.so.1 -o ../../../lib/libFingerprints.so.1.2016.03.5 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libFingerprints.so.1.2016.03.5 ../../../lib/libFingerprints.so.1 ../../../lib/libFingerprints.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 57%] Built target Fingerprints
[ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/TplFileParser.cpp
[ 57%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/BadFileException.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/TDTMolSupplier.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/BadFileException.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/TDTMolSupplier.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/BadFileException.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/TDTMolSupplier.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::fpos<__mbstate_t>}; _Tp = std::fpos<__mbstate_t>; _Alloc = std::allocator<std::fpos<__mbstate_t> >]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<std::fpos<__mbstate_t> >::iterator {aka __gnu_cxx::__normal_iterator<std::fpos<__mbstate_t>*, std::vector<std::fpos<__mbstate_t> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::fpos<__mbstate_t>}; _Tp = std::fpos<__mbstate_t>; _Alloc = std::allocator<std::fpos<__mbstate_t> >]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::fpos<__mbstate_t>*, std::vector<std::fpos<__mbstate_t> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:20:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/MolWriters.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/TDTWriter.cpp:16:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/TDTWriter.cpp: In destructor 'virtual RDKit::TDTWriter::~TDTWriter()':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Invariant.h:100:11: warning: throw will always call terminate() [-Wterminate]
throw inv; \
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/TDTWriter.cpp:64:5: note: in expansion of macro 'CHECK_INVARIANT'
CHECK_INVARIANT(dp_ostream,
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Invariant.h:100:11: note: in C++11 destructors default to noexcept
throw inv; \
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/TDTWriter.cpp:64:5: note: in expansion of macro 'CHECK_INVARIANT'
CHECK_INVARIANT(dp_ostream,
^
/usr/include/c++/7/bits/vector.tcc: In function 'void RDKit::TDTParseUtils::ParseNumberList(std::__cxx11::string, std::vector<T>&, std::istream*) [with T = double]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/BadFileException.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/TDTMolSupplier.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In member function 'RDKit::ROMol* RDKit::TDTMolSupplier::parseMol(std::__cxx11::string)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 57%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
Scanning dependencies of target testPartialCharges
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 57%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges/test1.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/boost/graph/adjacency_list.hpp:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Catalogs/Catalog.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/FileParsers.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/TplFileParser.cpp:12:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/set:60:0,
from /usr/include/boost/graph/adjacency_list.hpp:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Catalogs/Catalog.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.cpp:11:
/usr/include/c++/7/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const double&>, std::tuple<>}; _Key = double; _Val = std::pair<const double, int>; _KeyOfValue = std::_Select1st<std::pair<const double, int> >; _Compare = RDKit::ltDouble; _Alloc = std::allocator<std::pair<const double, int> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, int> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/FileParsers.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/TplFileParser.cpp:12:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/functional/hash/extensions.hpp:22,
from /usr/include/boost/functional/hash/hash.hpp:560,
from /usr/include/boost/functional/hash.hpp:6,
from /usr/include/boost/unordered/unordered_set.hpp:18,
from /usr/include/boost/unordered_set.hpp:17,
from /usr/include/boost/graph/adjacency_list.hpp:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Catalogs/Catalog.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.cpp:11:
/usr/include/c++/7/bits/stl_map.h: In function 'unsigned int RDKit::addOrder1Paths(RDKit::PATH_LIST&, const RDKit::ROMol&, RDKit::FragCatalog*, RDKit::DOUBLE_INT_MAP&, const MatchVectType&)':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, int> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, int> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/boost/graph/adjacency_list.hpp:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Catalogs/Catalog.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In function 'unsigned int RDKit::addHigherOrderPaths(const INT_PATH_LIST_MAP&, const RDKit::ROMol&, RDKit::FragCatalog*, RDKit::DOUBLE_INT_MAP&, const MatchVectType&)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/functional/hash/extensions.hpp:22,
from /usr/include/boost/functional/hash/hash.hpp:560,
from /usr/include/boost/functional/hash.hpp:6,
from /usr/include/boost/unordered/unordered_set.hpp:18,
from /usr/include/boost/unordered_set.hpp:17,
from /usr/include/boost/graph/adjacency_list.hpp:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Catalogs/Catalog.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.cpp:11:
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, int> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, int> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, int> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, int> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_vector.h: In function 'void RDKit::ParseTPLAtomLine(std::__cxx11::string, unsigned int, RDKit::RWMol*, RDKit::Conformer*)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'RDKit::Conformer* RDKit::ParseConfData(std::istream*, unsigned int&, RDKit::RWMol*, unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/TplFileWriter.cpp
[ 57%] Linking CXX executable testPartialCharges
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testPartialCharges.dir/test1.cpp.o -o testPartialCharges ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 57%] Built target testPartialCharges
[ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/PDBParser.cpp
[ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/PDBWriter.cpp
[ 57%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragCatParams.cpp
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/PDBWriter.cpp: In function 'std::__cxx11::string RDKit::GetPDBBondLines(const RDKit::Atom*, bool, bool, bool, unsigned int&)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/PDBWriter.cpp:163:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
v.push_back(dst);
~~~~~~~~~~~^~~~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/PDBWriter.cpp:164:7: note: here
case Bond::TRIPLE:
^~~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/PDBWriter.cpp:165:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
v.push_back(dst);
~~~~~~~~~~~^~~~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/PDBWriter.cpp:166:7: note: here
case Bond::DOUBLE:
^~~~
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdForceFieldHelpers
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 58%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/BadFileException.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/PDBParser.cpp:16:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/BadFileException.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/PDBParser.cpp:16:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'void RDKit::PDBConformerLine(RDKit::RWMol*, const char*, unsigned int, RDKit::Conformer*&, int&)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'void RDKit::PDBAtomLine(RDKit::RWMol*, const char*, unsigned int, unsigned int, std::map<int, RDKit::Atom*>&)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 58%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragFPGenerator.cpp
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolChemicalFeatures
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 58%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp
[ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/PDBSupplier.cpp
In file included from /usr/include/c++/7/set:60:0,
from /usr/include/boost/graph/adjacency_list.hpp:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Catalogs/Catalog.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragFPGenerator.cpp:11:
/usr/include/c++/7/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const double&>, std::tuple<>}; _Key = double; _Val = std::pair<const double, int>; _KeyOfValue = std::_Select1st<std::pair<const double, int> >; _Compare = RDKit::ltDouble; _Alloc = std::allocator<std::pair<const double, int> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, int> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/boost/detail/container_fwd.hpp:94,
from /usr/include/boost/functional/hash/extensions.hpp:22,
from /usr/include/boost/functional/hash/hash.hpp:560,
from /usr/include/boost/functional/hash.hpp:6,
from /usr/include/boost/unordered/unordered_set.hpp:18,
from /usr/include/boost/unordered_set.hpp:17,
from /usr/include/boost/graph/adjacency_list.hpp:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Catalogs/Catalog.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragFPGenerator.cpp:11:
/usr/include/c++/7/bits/stl_map.h: In member function 'void RDKit::FragFPGenerator::computeFP(const RDKit::ROMol&, const FragCatalog&, const MatchVectType&, ExplicitBitVect*)':
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, int> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, int> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, int> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, int> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, int> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type 'std::_Rb_tree<double, std::pair<const double, int>, std::_Select1st<std::pair<const double, int> >, RDKit::ltDouble, std::allocator<std::pair<const double, int> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const double, int> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
[ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/ProximityBonds.cpp
[ 60%] Linking CXX shared library ../../../lib/libFragCatalog.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libFragCatalog.so.1 -o ../../../lib/libFragCatalog.so.1.2016.03.5 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libCatalogs.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libFragCatalog.so.1.2016.03.5 ../../../lib/libFragCatalog.so.1 ../../../lib/libFragCatalog.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 60%] Built target FragCatalog
[ 61%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ReducedGraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target testReducedGraphs
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 61%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ReducedGraphs/test1.cpp
[ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/SequenceParsers.cpp
[ 61%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o ../../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libForceField.so.1.2016.03.5 ../../../../lib/libOptimizer.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
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[ 61%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/SequenceParsers.cpp: In function 'const char* RDKit::LookupHELMPeptideMonomer(const char*)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/SequenceParsers.cpp:826:7: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (ptr[1] == '\0') return "ASP";
^~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/SequenceParsers.cpp:827:5: note: here
case 'E':
^~~~
[ 61%] Linking CXX executable testReducedGraphs
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testReducedGraphs.dir/test1.cpp.o -o testReducedGraphs ../../../lib/libReducedGraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 61%] Built target testReducedGraphs
[ 61%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ReducedGraphs/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target rdReducedGraphs
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make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 62%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp
[ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/SequenceWriters.cpp
[ 63%] Linking CXX shared library ../../../lib/libFileParsers.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libFileParsers.so.1 -o ../../../lib/libFileParsers.so.1.2016.03.5 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libFileParsers.so.1 ../../../lib/libFileParsers.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 63%] Built target FileParsers
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
Scanning dependencies of target rdchem
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
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make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 63%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/rdchem.cpp
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
Scanning dependencies of target rdmolfiles
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make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 63%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/rdmolfiles.cpp
[ 63%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o ../../../../lib/libMolChemicalFeatures.so.1.2016.03.5 ../../../../lib/libCatalogs.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 63%] Built target rdMolChemicalFeatures
[ 63%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp
[ 63%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o ../../../../lib/libReducedGraphs.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 63%] Built target rdReducedGraphs
[ 63%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/Table.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/Table.cpp
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp:23:0:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
" returning.");
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:184:56: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
off_type py_pos = bp::extract<off_type>(py_tell());
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:154:58: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
off_type py_pos = bp::extract<off_type>(py_tell());
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(boost_adaptbx::python::streambuf::off_type, std::ios_base::seekdir, std::ios_base::openmode)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:335:16: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
result = off_type(bp::extract<off_type>(py_tell()));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekpos(boost_adaptbx::python::streambuf::pos_type, std::ios_base::openmode)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:335:16: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
result = off_type(bp::extract<off_type>(py_tell()));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 64%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o
[ 64%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/Atom.cpp
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/SDMolSupplier.cpp
[ 64%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/TDTMolSupplier.cpp
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/UFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testUFFForceField
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 64%] Building CXX object Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/UFF && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/testUFFForceField.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:15,
from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/SDMolSupplier.cpp:13:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::fpos<__mbstate_t>}; _Tp = std::fpos<__mbstate_t>; _Alloc = std::allocator<std::fpos<__mbstate_t> >]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<std::fpos<__mbstate_t> >::iterator {aka __gnu_cxx::__normal_iterator<std::fpos<__mbstate_t>*, std::vector<std::fpos<__mbstate_t> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In function 'void RDKit::setStreamIndices(RDKit::SDMolSupplier&, boost::python::api::object)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::fpos<__mbstate_t>*, std::vector<std::fpos<__mbstate_t> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
[ 64%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/SmilesMolSupplier.cpp
Scanning dependencies of target DistGeometry
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 64%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/DistGeomUtils.cpp
[ 64%] Linking CXX executable testUFFForceField
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -o testUFFForceField ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libForceFieldHelpers.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libForceField.so.1.2016.03.5 ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 64%] Built target testUFFForceField
[ 64%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/SmilesWriter.cpp
[ 64%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/Bond.cpp
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/SmilesWriter.cpp:20:0:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
" returning.");
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 65%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/TriangleSmooth.cpp
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:184:56: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
off_type py_pos = bp::extract<off_type>(py_tell());
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:154:58: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
off_type py_pos = bp::extract<off_type>(py_tell());
^
[ 66%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/Mol.cpp
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(boost_adaptbx::python::streambuf::off_type, std::ios_base::seekdir, std::ios_base::openmode)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:335:16: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
result = off_type(bp::extract<off_type>(py_tell()));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekpos(boost_adaptbx::python::streambuf::pos_type, std::ios_base::openmode)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:335:16: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
result = off_type(bp::extract<off_type>(py_tell()));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 66%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/DistViolationContrib.cpp
[ 66%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/SDWriter.cpp
[ 66%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/ChiralViolationContrib.cpp
[ 66%] Linking CXX shared library ../../lib/libDistGeometry.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libDistGeometry.so.1 -o ../../lib/libDistGeometry.so.1.2016.03.5 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o ../../lib/libEigenSolvers.so.1.2016.03.5 ../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../lib/libForceField.so.1.2016.03.5 ../../lib/libOptimizer.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libSubstructMatch.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/SDWriter.cpp:21:0:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
" returning.");
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libDistGeometry.so.1.2016.03.5 ../../lib/libDistGeometry.so.1 ../../lib/libDistGeometry.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 66%] Built target DistGeometry
[ 66%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/Conformer.cpp
[ 67%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/TDTWriter.cpp
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:184:56: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
off_type py_pos = bp::extract<off_type>(py_tell());
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:154:58: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
off_type py_pos = bp::extract<off_type>(py_tell());
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(boost_adaptbx::python::streambuf::off_type, std::ios_base::seekdir, std::ios_base::openmode)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:335:16: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
result = off_type(bp::extract<off_type>(py_tell()));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekpos(boost_adaptbx::python::streambuf::pos_type, std::ios_base::openmode)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:335:16: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
result = off_type(bp::extract<off_type>(py_tell()));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 67%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/PDBWriter.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:15,
from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/Conformer.cpp:13:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:15,
from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/Conformer.cpp:13:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/Conformer.cpp:20:0:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h: In function 'void RDKit::SetAtomPos(RDKit::Conformer*, unsigned int, boost::python::api::object)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h:67:9: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
T res = python::extract<T>(d_seq[which]);
^~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h:67:9: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
T res = python::extract<T>(d_seq[which]);
^~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h:67:9: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
T res = python::extract<T>(d_seq[which]);
^~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:15,
from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/Conformer.cpp:13:
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/TDTWriter.cpp:21:0:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
" returning.");
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 67%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/RingInfo.cpp
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/PDBWriter.cpp:20:0:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
" returning.");
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:184:56: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
off_type py_pos = bp::extract<off_type>(py_tell());
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:154:58: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
off_type py_pos = bp::extract<off_type>(py_tell());
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(boost_adaptbx::python::streambuf::off_type, std::ios_base::seekdir, std::ios_base::openmode)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:335:16: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
result = off_type(bp::extract<off_type>(py_tell()));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekpos(boost_adaptbx::python::streambuf::pos_type, std::ios_base::openmode)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:335:16: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
result = off_type(bp::extract<off_type>(py_tell()));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:184:56: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
off_type py_pos = bp::extract<off_type>(py_tell());
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:154:58: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
off_type py_pos = bp::extract<off_type>(py_tell());
^
[ 67%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/EditableMol.cpp
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(boost_adaptbx::python::streambuf::off_type, std::ios_base::seekdir, std::ios_base::openmode)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:335:16: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
result = off_type(bp::extract<off_type>(py_tell()));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekpos(boost_adaptbx::python::streambuf::pos_type, std::ios_base::openmode)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:335:16: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
result = off_type(bp::extract<off_type>(py_tell()));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 68%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/MonomerInfo.cpp
[ 68%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 68%] Built target rdmolfiles
[ 68%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target rdForceField
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make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 68%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/Wrap/ForceField.cpp
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:20:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/EditableMol.cpp:22:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/EditableMol.cpp: In destructor 'RDKit::{anonymous}::EditableMol::~EditableMol()':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Invariant.h:108:11: warning: throw will always call terminate() [-Wterminate]
throw inv; \
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Invariant.h:108:11: note: in definition of macro 'PRECONDITION'
throw inv; \
^~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Invariant.h:108:11: note: in C++11 destructors default to noexcept
throw inv; \
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Invariant.h:108:11: note: in definition of macro 'PRECONDITION'
throw inv; \
^~~
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target testDistGeom
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
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make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 68%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/testDistGeom.cpp
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeom
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
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make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 68%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom/Wrap && /usr/bin/c++ -DDistGeom_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/Wrap/DistGeom.cpp
[ 68%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 68%] Built target rdchem
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolMolOpsTest
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 68%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/molopstest.cpp
[ 68%] Linking CXX executable testDistGeom
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -o testDistGeom ../../lib/libDistGeometry.so.1.2016.03.5 ../../lib/libEigenSolvers.so.1.2016.03.5 ../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../lib/libForceField.so.1.2016.03.5 ../../lib/libOptimizer.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libSubstructMatch.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 68%] Built target testDistGeom
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolTest1
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make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 68%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/test1.cpp
[ 69%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o ../../../lib/libDistGeometry.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libForceField.so.1.2016.03.5 ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 69%] Built target DistGeom
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestChirality
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 70%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/testChirality.cpp
[ 70%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o ../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../lib/libForceField.so.1.2016.03.5 ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 70%] Built target rdForceField
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestPickler
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 70%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/testPickler.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/test1.cpp:12:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/test1.cpp:12:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 70%] Linking CXX executable graphmolTest1
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/graphmolTest1.dir/test1.cpp.o -o graphmolTest1 ../../lib/libFileParsers.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/testPickler.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 70%] Built target graphmolTest1
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/testPickler.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
Scanning dependencies of target hanoiTest
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 70%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/hanoitest.cpp
[ 70%] Linking CXX executable graphmoltestPickler
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -o graphmoltestPickler ../../lib/libSubstructMatch.so.1.2016.03.5 ../../lib/libFileParsers.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 70%] Built target graphmoltestPickler
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
Scanning dependencies of target resMolSupplierTest
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 71%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/resMolSupplierTest.cpp
[ 71%] Linking CXX executable graphmoltestChirality
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -o graphmoltestChirality ../../lib/libFileParsers.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 71%] Built target graphmoltestChirality
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
Scanning dependencies of target testDepictor
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 71%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/testDepictor.cpp
[ 72%] Linking CXX executable hanoiTest
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -o hanoiTest ../../lib/libFileParsers.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 72%] Built target hanoiTest
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
Scanning dependencies of target rdDepictor
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 72%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp
[ 72%] Linking CXX executable resMolSupplierTest
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -o resMolSupplierTest ../../lib/libSubstructMatch.so.1.2016.03.5 ../../lib/libFileParsers.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 72%] Built target resMolSupplierTest
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target smiTest1
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 72%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/smiTest1.dir/test.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/test.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/molopstest.cpp:10:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/molopstest.cpp:10:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'void testIssue212()':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/set:60:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/SetQuery.h:12,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:28,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/testDepictor.cpp:13:
/usr/include/c++/7/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_erase_aux(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator) [with _Key = int; _Val = std::pair<const int, RDGeom::Point2D>; _KeyOfValue = std::_Select1st<std::pair<const int, RDGeom::Point2D> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point2D> >]':
/usr/include/c++/7/bits/stl_tree.h:2470:5: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point2D>, std::_Select1st<std::pair<const int, RDGeom::Point2D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point2D> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, RDGeom::Point2D> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'void testAddHsCoords()':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, RDGeom::Point2D>; _KeyOfValue = std::_Select1st<std::pair<const int, RDGeom::Point2D> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point2D> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point2D>, std::_Select1st<std::pair<const int, RDGeom::Point2D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point2D> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, RDGeom::Point2D> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:24,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/testDepictor.cpp:13:
/usr/include/c++/7/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](std::map<_Key, _Tp, _Compare, _Alloc>::key_type&&) [with _Key = int; _Tp = RDGeom::Point2D; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point2D> >]':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point2D>, std::_Select1st<std::pair<const int, RDGeom::Point2D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point2D> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, RDGeom::Point2D> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /usr/include/c++/7/set:60:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/SetQuery.h:12,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:28,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/testDepictor.cpp:13:
/usr/include/c++/7/bits/stl_tree.h: In function 'void test4()':
/usr/include/c++/7/bits/stl_tree.h:1125:14: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point2D>, std::_Select1st<std::pair<const int, RDGeom::Point2D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point2D> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, RDGeom::Point2D> >}' changed in GCC 7.1
_M_erase_aux(__position);
~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h:1125:14: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point2D>, std::_Select1st<std::pair<const int, RDGeom::Point2D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point2D> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, RDGeom::Point2D> >}' changed in GCC 7.1
_M_erase_aux(__position);
~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_tree.h:1125:14: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point2D>, std::_Select1st<std::pair<const int, RDGeom::Point2D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point2D> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, RDGeom::Point2D> >}' changed in GCC 7.1
_M_erase_aux(__position);
~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'void testAddConformers()':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/map:61:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:24,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/testDepictor.cpp:13:
/usr/include/c++/7/bits/stl_map.h: In function 'void testIssue3122141()':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point2D>, std::_Select1st<std::pair<const int, RDGeom::Point2D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point2D> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, RDGeom::Point2D> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In function 'void testIssue2091304()':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point2D>, std::_Select1st<std::pair<const int, RDGeom::Point2D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point2D> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, RDGeom::Point2D> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h: In function 'void testIssue2303566()':
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point2D>, std::_Select1st<std::pair<const int, RDGeom::Point2D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point2D> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, RDGeom::Point2D> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point2D>, std::_Select1st<std::pair<const int, RDGeom::Point2D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point2D> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, RDGeom::Point2D> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point2D>, std::_Select1st<std::pair<const int, RDGeom::Point2D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point2D> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, RDGeom::Point2D> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point2D>, std::_Select1st<std::pair<const int, RDGeom::Point2D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point2D> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, RDGeom::Point2D> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point2D>, std::_Select1st<std::pair<const int, RDGeom::Point2D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point2D> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, RDGeom::Point2D> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point2D>, std::_Select1st<std::pair<const int, RDGeom::Point2D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point2D> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, RDGeom::Point2D> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
[ 72%] Linking CXX executable testDepictor
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testDepictor.dir/testDepictor.cpp.o -o testDepictor ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 72%] Built target testDepictor
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
Scanning dependencies of target testSequence
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 72%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/testSequence.cpp
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Conformer.h:13:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h:35,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/RDDepictor.h:16,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:17:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h: In function 'unsigned int RDDepict::Compute2DCoords(RDKit::ROMol&, bool, bool, boost::python::dict&, unsigned int, unsigned int, int, bool, double)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:288:15: warning: '*((void*)(&<anonymous>)+16).RDGeom::Point2D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
x = other.x;
~~~~~~^
[ 72%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o ../../../../lib/libDepictor.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 72%] Built target rdDepictor
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target fileParsersTest1
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 72%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/test1.cpp
[ 72%] Linking CXX executable testSequence
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testSequence.dir/testSequence.cpp.o -o testSequence ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 72%] Built target testSequence
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolSupplier
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 73%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/testMolSupplier.cpp
[ 74%] Linking CXX executable graphmolMolOpsTest
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -o graphmolMolOpsTest ../../lib/libSubstructMatch.so.1.2016.03.5 ../../lib/libFileParsers.so.1.2016.03.5 ../../lib/libSmilesParse.so.1.2016.03.5 ../../lib/libGraphMol.so.1.2016.03.5 ../../lib/libRDGeometryLib.so.1.2016.03.5 ../../lib/libDataStructs.so.1.2016.03.5 ../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 74%] Built target graphmolMolOpsTest
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolWriter
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 74%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/testMolWriter.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/testMolSupplier.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::fpos<__mbstate_t>&}; _Tp = std::fpos<__mbstate_t>; _Alloc = std::allocator<std::fpos<__mbstate_t> >]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<std::fpos<__mbstate_t> >::iterator {aka __gnu_cxx::__normal_iterator<std::fpos<__mbstate_t>*, std::vector<std::fpos<__mbstate_t> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/testMolSupplier.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In function 'void testSetStreamIndices()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::fpos<__mbstate_t>*, std::vector<std::fpos<__mbstate_t> > >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 74%] Linking CXX executable testMolSupplier
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -o testMolSupplier ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 74%] Built target testMolSupplier
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
Scanning dependencies of target testTplParser
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 74%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/testTpls.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/testMolWriter.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/testMolWriter.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 75%] Linking CXX executable smiTest1
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/smiTest1.dir/test.cpp.o -o smiTest1 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 75%] Built target smiTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
Scanning dependencies of target testMol2ToMol
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 75%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/testMol2ToMol.cpp
/usr/include/c++/7/bits/stl_vector.h: In function 'void testIssue265()':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 75%] Linking CXX executable testTplParser
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testTplParser.dir/testTpls.cpp.o -o testTplParser ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 75%] Built target testTplParser
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Substruct /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubstructMatch
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 76%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Substruct/test1.cpp
[ 77%] Linking CXX executable testMolWriter
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -o testMolWriter ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 77%] Built target testMolWriter
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
Scanning dependencies of target Descriptors
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 77%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors/Crippen.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/test1.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/test1.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 77%] Linking CXX executable testMol2ToMol
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -o testMol2ToMol ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 77%] Built target testMol2ToMol
[ 77%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors/MolDescriptors.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/boost/graph/adjacency_list.hpp:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h:26,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/GraphMol.h:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors/Crippen.cpp:12:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const RDKit::Descriptors::CrippenParams&}; _Tp = RDKit::Descriptors::CrippenParams; _Alloc = std::allocator<RDKit::Descriptors::CrippenParams>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<RDKit::Descriptors::CrippenParams>::iterator {aka __gnu_cxx::__normal_iterator<RDKit::Descriptors::CrippenParams*, std::vector<RDKit::Descriptors::CrippenParams> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /usr/include/boost/graph/adjacency_list.hpp:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h:26,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/GraphMol.h:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors/Crippen.cpp:12:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Descriptors::CrippenParamCollection::CrippenParamCollection(const string&)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDKit::Descriptors::CrippenParams*, std::vector<RDKit::Descriptors::CrippenParams> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemTransforms /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testChemTransforms
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 77%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemTransforms/testChemTransforms.cpp
[ 77%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors/MolSurf.cpp
[ 77%] Linking CXX executable fileParsersTest1
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/fileParsersTest1.dir/test1.cpp.o -o fileParsersTest1 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 77%] Built target fileParsersTest1
[ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors/Lipinski.cpp
[ 78%] Linking CXX executable testSubstructMatch
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testSubstructMatch.dir/test1.cpp.o -o testSubstructMatch ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 78%] Built target testSubstructMatch
[ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
Scanning dependencies of target filterCatalogTest
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 78%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdfiltercatalog
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 78%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp
[ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors/MQN.cpp
[ 78%] Linking CXX executable filterCatalogTest
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -o filterCatalogTest ../../../lib/libFilterCatalog.so.1.2016.03.5 ../../../lib/libCatalogs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 -lboost_serialization ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 78%] Built target filterCatalogTest
[ 78%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp
[ 78%] Linking CXX executable testChemTransforms
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -o testChemTransforms ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
Scanning dependencies of target testFragCatalog
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
[ 78%] Built target testChemTransforms
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
[ 78%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/test1.cpp
Scanning dependencies of target rdfragcatalog
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 78%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp
[ 78%] Linking CXX shared library ../../../lib/libDescriptors.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libDescriptors.so.1 -o ../../../lib/libDescriptors.so.1.2016.03.5 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libDescriptors.so.1.2016.03.5 ../../../lib/libDescriptors.so.1 ../../../lib/libDescriptors.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 78%] Built target Descriptors
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target testFingerprints
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 78%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/test1.cpp
[ 78%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp
[ 78%] Linking CXX executable testFragCatalog
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testFragCatalog.dir/test1.cpp.o -o testFragCatalog ../../../lib/libFragCatalog.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libCatalogs.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 78%] Built target testFragCatalog
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolTransforms /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolTransforms
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 78%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolTransforms/test1.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolTransforms/test1.cpp:12:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolTransforms/test1.cpp:12:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In function 'void test1Canonicalization()':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:15,
from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp:12:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<double>::iterator {aka __gnu_cxx::__normal_iterator<double*, std::vector<double> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 78%] Linking CXX executable testMolTransforms
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testMolTransforms.dir/test1.cpp.o -o testMolTransforms ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 78%] Built target testMolTransforms
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolAlign
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 79%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp
[ 79%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp: In function 'RDKit::MolAlign::PyO3A* RDKit::MolAlign::getCrippenO3A(RDKit::ROMol&, RDKit::ROMol&, boost::python::list, boost::python::list, int, int, bool, unsigned int, unsigned int, boost::python::list, boost::python::list)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:431:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
(python::len(prbCrippenContribs) == prbNAtoms)) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:446:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
(python::len(refCrippenContribs) == refNAtoms)) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp: In function 'boost::python::tuple RDKit::MolAlign::getCrippenO3AForConfs(RDKit::ROMol&, RDKit::ROMol&, int, boost::python::list, boost::python::list, int, bool, unsigned int, unsigned int, boost::python::list, boost::python::list)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:514:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
(python::len(prbCrippenContribs) == prbNAtoms)) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:529:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
(python::len(refCrippenContribs) == refNAtoms)) {
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 79%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:23:0:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h: In function 'RDNumeric::DoubleVector* RDKit::_translateWeights(boost::python::api::object)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h:67:9: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
T res = python::extract<T>(d_seq[which]);
^~~
[ 80%] Linking CXX executable testFingerprints
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testFingerprints.dir/test1.cpp.o -o testFingerprints ../../../lib/libFingerprints.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 80%] Built target testFingerprints
[ 81%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp
[ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o ../../../../lib/libMolAlign.so.1.2016.03.5 ../../../../lib/libMolTransforms.so.1.2016.03.5 ../../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../../lib/libForceField.so.1.2016.03.5 ../../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../../lib/libAlignment.so.1.2016.03.5 ../../../../lib/libOptimizer.so.1.2016.03.5 ../../../../lib/libDescriptors.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libPartialCharges.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubgraphs.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 81%] Built target rdMolAlign
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target testFeatures
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 81%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testShapeHelpers
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 81%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp:15:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp:15:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 82%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o ../../../../lib/libFilterCatalog.so.1.2016.03.5 ../../../../lib/libSubgraphs.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libCatalogs.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lboost_serialization -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 82%] Built target rdfiltercatalog
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolCatalog
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 83%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolCatalog/test1.cpp
/usr/include/c++/7/bits/stl_vector.h: In function 'void test6()':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 83%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o ../../../../lib/libFragCatalog.so.1.2016.03.5 ../../../../lib/libSubgraphs.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libCatalogs.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 83%] Built target rdfragcatalog
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolCatalog/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolCatalog
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 83%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp
[ 83%] Linking CXX executable testFeatures
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testFeatures.dir/testFeatures.cpp.o -o testFeatures ../../../lib/libMolChemicalFeatures.so.1.2016.03.5 ../../../lib/libCatalogs.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 83%] Built target testFeatures
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target MolDraw2D
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 83%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.cpp
[ 83%] Linking CXX executable testShapeHelpers
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -o testShapeHelpers ../../../lib/libShapeHelpers.so.1.2016.03.5 ../../../lib/libMolAlign.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libAlignment.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 83%] Built target testShapeHelpers
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCS
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 83%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/FMCS.cpp
[ 83%] Linking CXX executable testMolCatalog
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testMolCatalog.dir/test1.cpp.o -o testMolCatalog ../../../lib/libMolCatalog.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libCatalogs.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 83%] Built target testMolCatalog
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolHash /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target MolHash
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 83%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash && /usr/bin/c++ -DMolHash_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolHash/MolHash.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/QueryOps.h:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.cpp:12:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {RDGeom::Point2D}; _Tp = RDGeom::Point2D; _Alloc = std::allocator<RDGeom::Point2D>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<RDGeom::Point2D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point2D*, std::vector<RDGeom::Point2D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void RDKit::MolDraw2D::extractAtomCoords(const RDKit::ROMol&, int)':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point2D*, std::vector<RDGeom::Point2D> >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 83%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp
[ 83%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Seed.cpp
[ 83%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o ../../../../lib/libMolCatalog.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libCatalogs.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 83%] Built target rdMolCatalog
[ 84%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash && /usr/bin/c++ -DMolHash_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolHash/HashToString.cpp
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MMPA /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target MMPA
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 84%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA && /usr/bin/c++ -DMMPA_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MMPA/MMPA.cpp
[ 85%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp
[ 85%] Linking CXX shared library ../../../lib/libMolHash.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libMolHash.so.1 -o ../../../lib/libMolHash.so.1.2016.03.5 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libDescriptors.so.1.2016.03.5 ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolHash.so.1.2016.03.5 ../../../lib/libMolHash.so.1 ../../../lib/libMolHash.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 85%] Built target MolHash
[ 85%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeomHelpers
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 85%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DDistGeomHelpers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const RDGeom::Point2D&}; _Tp = RDGeom::Point2D; _Alloc = std::allocator<RDGeom::Point2D>]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<RDGeom::Point2D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point2D*, std::vector<RDGeom::Point2D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp:11:
/usr/include/c++/7/bits/stl_vector.h: In function 'void RDKit::MolDraw2D_detail::arcPoints(const RDGeom::Point2D&, const RDGeom::Point2D&, std::vector<RDGeom::Point2D>&, float, float)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point2D*, std::vector<RDGeom::Point2D> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 85%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp
[ 86%] Linking CXX shared library ../../../lib/libMMPA.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libMMPA.so.1 -o ../../../lib/libMMPA.so.1.2016.03.5 CMakeFiles/MMPA.dir/MMPA.cpp.o ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMMPA.so.1.2016.03.5 ../../../lib/libMMPA.so.1 ../../../lib/libMMPA.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 86%] Built target MMPA
[ 87%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/SubstructMatchCustom.cpp
[ 87%] Linking CXX shared library ../../../lib/libMolDraw2D.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libMolDraw2D.so.1 -o ../../../lib/libMolDraw2D.so.1.2016.03.5 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolDraw2D.so.1.2016.03.5 ../../../lib/libMolDraw2D.so.1 ../../../lib/libMolDraw2D.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 87%] Built target MolDraw2D
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
Scanning dependencies of target ChemReactions
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make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/Reaction.cpp
[ 87%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DDistGeomHelpers_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers/Embedder.cpp
[ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/MDLParser.cpp
[ 87%] Linking CXX shared library ../../../lib/libFMCS.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libFMCS.so.1 -o ../../../lib/libFMCS.so.1.2016.03.5 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libFMCS.so.1.2016.03.5 ../../../lib/libFMCS.so.1 ../../../lib/libFMCS.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 87%] Built target FMCS
[ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/DaylightParser.cpp
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
Scanning dependencies of target testDescriptors
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 87%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors/test.cpp
[ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/ReactionPickler.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers/Embedder.h:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers/Embedder.cpp:12:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers/Embedder.h:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers/Embedder.cpp:12:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/ReactionWriter.cpp
/usr/include/c++/7/bits/stl_vector.h: In function 'void RDKit::DGeomHelpers::detail::embedHelper_(int, int, RDKit::DGeomHelpers::detail::EmbedArgs*)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 88%] Linking CXX shared library ../../../lib/libDistGeomHelpers.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libDistGeomHelpers.so.1 -o ../../../lib/libDistGeomHelpers.so.1.2016.03.5 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o ../../../lib/libDistGeometry.so.1.2016.03.5 ../../../lib/libAlignment.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libForceField.so.1.2016.03.5 ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libDistGeomHelpers.so.1.2016.03.5 ../../../lib/libDistGeomHelpers.so.1 ../../../lib/libDistGeomHelpers.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 88%] Built target DistGeomHelpers
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDescriptors
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 89%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDescriptors_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp
[ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/ReactionDepict.cpp
[ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp
[ 90%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/ReactionUtils.cpp
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMFFForceFieldHelpers
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 90%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp
[ 90%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/MoleculeParser.cpp
[ 91%] Linking CXX executable testDescriptors
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testDescriptors.dir/test.cpp.o -o testDescriptors ../../../lib/libDescriptors.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 91%] Built target testDescriptors
[ 91%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.cpp
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/UFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/UFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testUFFForceFieldHelpers
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 91%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp:15:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp:15:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/Reaction.h:36,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.cpp:34:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h:17,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h:19,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.h:23,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h:22,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/Reaction.h:36,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.cpp:34:
/usr/include/c++/7/bits/stl_vector.h: In function 'void RDKit::ReactionRunnerUtils::generateProductConformers(RDKit::Conformer*, const RDKit::ROMol&, RDKit::ReactionRunnerUtils::ReactantProductAtomMapping*)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 91%] Linking CXX executable testMMFFForceFieldHelpers
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -o testMMFFForceFieldHelpers ../../../../lib/libDistGeomHelpers.so.1.2016.03.5 ../../../../lib/libDistGeometry.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libMolAlign.so.1.2016.03.5 ../../../../lib/libAlignment.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../../lib/libForceField.so.1.2016.03.5 ../../../../lib/libOptimizer.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libMolTransforms.so.1.2016.03.5 ../../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 91%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/CrystalFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testCrystalForceField
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 91%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp
[ 91%] Linking CXX shared library ../../../lib/libChemReactions.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -Wl,-soname,libChemReactions.so.1 -o ../../../lib/libChemReactions.so.1.2016.03.5 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o ../../../lib/libDescriptors.so.1.2016.03.5 ../../../lib/libFingerprints.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libChemReactions.so.1.2016.03.5 ../../../lib/libChemReactions.so.1 ../../../lib/libChemReactions.so
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 91%] Built target ChemReactions
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
[ 91%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o ../../../../lib/libDescriptors.so.1.2016.03.5 ../../../../lib/libPartialCharges.so.1.2016.03.5 ../../../../lib/libFingerprints.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubgraphs.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
Scanning dependencies of target testDistGeomHelpers
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 92%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 92%] Built target rdMolDescriptors
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp:15:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
Scanning dependencies of target rdDistGeom
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 92%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++ -DBOOST_PYTHON_MAX_ARITY=32 -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp:15:
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 92%] Linking CXX executable testCrystalForceField
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -o testCrystalForceField ../../../../lib/libDistGeomHelpers.so.1.2016.03.5 ../../../../lib/libDistGeometry.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libMolAlign.so.1.2016.03.5 ../../../../lib/libAlignment.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../../lib/libForceField.so.1.2016.03.5 ../../../../lib/libOptimizer.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libMolTransforms.so.1.2016.03.5 ../../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 92%] Built target testCrystalForceField
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolAlign
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 92%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/testMolAlign.cpp
[ 93%] Linking CXX executable testUFFForceFieldHelpers
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -o testUFFForceFieldHelpers ../../../../lib/libDistGeomHelpers.so.1.2016.03.5 ../../../../lib/libDistGeometry.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libMolAlign.so.1.2016.03.5 ../../../../lib/libAlignment.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../../lib/libForceField.so.1.2016.03.5 ../../../../lib/libOptimizer.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libMolTransforms.so.1.2016.03.5 ../../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 93%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target moldraw2DTest1
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 94%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/test1.cpp
In file included from /usr/include/c++/7/map:60:0,
from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:16,
from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:11:
/usr/include/c++/7/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<int&&>, std::tuple<>}; _Key = int; _Val = std::pair<const int, RDGeom::Point3D>; _KeyOfValue = std::_Select1st<std::pair<const int, RDGeom::Point3D> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, RDGeom::Point3D> >]':
/usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, RDGeom::Point3D> >}' changed in GCC 7.1
_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Conformer.h:13:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h:35,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/GraphMol.h:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:17:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h: In function 'RDKit::INT_VECT RDKit::EmbedMultipleConfs(RDKit::ROMol&, unsigned int, unsigned int, int, bool, bool, double, bool, unsigned int, double, boost::python::dict&, double, bool, bool, int, bool, bool, bool)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+16).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
x = other.x;
~~~~~~^
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:16,
from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:11:
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, RDGeom::Point3D> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Conformer.h:13:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h:35,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/GraphMol.h:18,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:17:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h: In function 'int RDKit::EmbedMolecule(RDKit::ROMol&, unsigned int, int, bool, bool, double, bool, unsigned int, boost::python::dict&, double, bool, bool, bool, bool, bool)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h:84:15: warning: '*((void*)(&<anonymous>)+16).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized]
x = other.x;
~~~~~~^
In file included from /usr/include/c++/7/map:61:0,
from /usr/include/boost/python/suite/indexing/detail/indexing_suite_detail.hpp:16,
from /usr/include/boost/python/suite/indexing/indexing_suite.hpp:12,
from /usr/include/boost/python/suite/indexing/vector_indexing_suite.hpp:9,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h:4,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:11:
/usr/include/c++/7/bits/stl_map.h:512:4: note: parameter passing for argument of type 'std::_Rb_tree<int, std::pair<const int, RDGeom::Point3D>, std::_Select1st<std::pair<const int, RDGeom::Point3D> >, std::less<int>, std::allocator<std::pair<const int, RDGeom::Point3D> > >::const_iterator {aka std::_Rb_tree_const_iterator<std::pair<const int, RDGeom::Point3D> >}' changed in GCC 7.1
__i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
^~~
[ 95%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o ../../../../lib/libDistGeomHelpers.so.1.2016.03.5 ../../../../lib/libDistGeometry.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../../lib/libForceField.so.1.2016.03.5 ../../../../lib/libMolAlign.so.1.2016.03.5 ../../../../lib/libOptimizer.so.1.2016.03.5 ../../../../lib/libAlignment.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libMolTransforms.so.1.2016.03.5 ../../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Vector.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Matrix.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/SquareMatrix.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Transform3D.h:15,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/AlignMolecules.h:13,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/testMolAlign.cpp:11:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<double, double>}; _Tp = std::pair<double, double>; _Alloc = std::allocator<std::pair<double, double> >]':
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type 'std::vector<std::pair<double, double> >::iterator {aka __gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<double, double>}; _Tp = std::pair<double, double>; _Alloc = std::allocator<std::pair<double, double> >]':
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 95%] Built target rdDistGeom
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDraw2D
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 95%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp
[ 95%] Linking CXX executable testMolAlign
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -o testMolAlign ../../../lib/libMolAlign.so.1.2016.03.5 ../../../lib/libDescriptors.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libDistGeomHelpers.so.1.2016.03.5 ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libDistGeometry.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libAlignment.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libForceField.so.1.2016.03.5 ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 95%] Built target testMolAlign
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target testFMCS
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 95%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/testFMCS_Unit.cpp
[ 95%] Linking CXX executable moldraw2DTest1
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -o moldraw2DTest1 ../../../lib/libMolDraw2D.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 95%] Built target moldraw2DTest1
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target rdFMCS
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 95%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp
[ 95%] Linking CXX executable testDistGeomHelpers
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -o testDistGeomHelpers ../../../lib/libDistGeomHelpers.so.1.2016.03.5 ../../../lib/libDistGeometry.so.1.2016.03.5 ../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../lib/libForceField.so.1.2016.03.5 ../../../lib/libMolAlign.so.1.2016.03.5 ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libAlignment.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 95%] Built target testDistGeomHelpers
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Test /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCStest
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 95%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Test && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp: In function 'std::__cxx11::string testChEMBL_Txt(const char*, double, const char*)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:502:63: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::vector<boost::shared_ptr<RDKit::ROMol> >::size_type {aka unsigned int}' [-Wformat=]
fprintf(fres, "%s;%lu;%.1f;%.4f;%u;%u;%s;", test, mols.size(), th, sec,
~~~~~~~~~~~
res.NumAtoms, res.NumBonds, res.SmartsString.c_str());
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp: In function 'void testFileSDF_RandomSet_SMI(const char*, const char*)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1176:53: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::vector<boost::shared_ptr<RDKit::ROMol> >::size_type {aka unsigned int}' [-Wformat=]
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1174:52:
fprintf(fcsv, "%u;%lu;%s;%.3f;%u;%u;%s;", n, mols.size(),
~~~~~~~~~~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1176:53:
res.NumBonds, res.SmartsString.c_str());
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1188:53: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::vector<boost::shared_ptr<RDKit::ROMol> >::size_type {aka unsigned int}' [-Wformat=]
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1186:53:
fprintf(fcsv, "%u;%lu;%s;%.3f;%u;%u;%s\n", n, mols.size(),
~~~~~~~~~~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1188:53:
res.NumBonds, res.SmartsString.c_str());
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp: In function 'void testFileSDF_RandomSet(const char*, const char*)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1283:55: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::vector<boost::shared_ptr<RDKit::ROMol> >::size_type {aka unsigned int}' [-Wformat=]
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1281:54:
fprintf(fcsv, "%u;%lu;%s;%.5f;%u;%u;%s;", n, mols.size(),
~~~~~~~~~~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1283:55:
res.NumBonds, res.SmartsString.c_str());
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1332:53: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::vector<boost::shared_ptr<RDKit::ROMol> >::size_type {aka unsigned int}' [-Wformat=]
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1330:52:
fprintf(fcsv, "%u;%lu;%s;%.5f;%u;%u;%s;", n, mols.size(),
~~~~~~~~~~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1332:53:
res.NumBonds, res.SmartsString.c_str());
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1413:55: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::vector<boost::shared_ptr<RDKit::ROMol> >::size_type {aka unsigned int}' [-Wformat=]
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1411:54:
fprintf(fcsv, "%u;%lu;%s;%.5f;%u;%u;%s;", n, mols.size(),
~~~~~~~~~~~
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp:1413:55:
res.NumBonds, res.SmartsString.c_str());
^
[ 95%] Linking CXX executable testFMCS
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -o testFMCS ../../../lib/libFMCS.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 95%] Built target testFMCS
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolHash /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolHash
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 95%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolHash/testMolHash.cpp
[ 95%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o ../../../../lib/libFMCS.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libDepictor.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libChemTransforms.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 95%] Built target rdFMCS
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolHash/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolHash
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 95%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp
[ 95%] Linking CXX executable FMCStest
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/FMCStest.dir/testFMCS.cpp.o -o FMCStest ../../../../lib/libFMCS.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../../lib/libDepictor.so.1.2016.03.5 ../../../../lib/libChemTransforms.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 95%] Built target FMCStest
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MMPA /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMPA
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 96%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MMPA/MMPA_UnitTest.cpp
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp: In function 'std::map<int, double>* RDKit::{anonymous}::pyDictToDoubleMap(boost::python::api::object)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp:55:59: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
double r = python::extract<double>(tDict.values()[i]);
^
[ 96%] Linking CXX executable testMolHash
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testMolHash.dir/testMolHash.cpp.o -o testMolHash ../../../lib/libMolHash.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libDescriptors.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 96%] Built target testMolHash
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MMPA/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMMPA
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 96%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp
[ 96%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o ../../../../lib/libMolDraw2D.so.1.2016.03.5 ../../../../lib/libDepictor.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libSubgraphs.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 96%] Built target rdMolDraw2D
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
Scanning dependencies of target rdmolops
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 96%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/rdmolops.cpp
[ 96%] Linking CXX executable testMMPA
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -o testMMPA ../../../lib/libMMPA.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 96%] Built target testMMPA
[ 96%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/MolOps.cpp
[ 97%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o ../../../../lib/libMolHash.so.1.2016.03.5 ../../../../lib/libDescriptors.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libPartialCharges.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubgraphs.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libDepictor.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 97%] Built target rdMolHash
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/MMFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMFFForceField
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 98%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/MMFF && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/testMMFFForceField.cpp
[ 98%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o ../../../../lib/libMMPA.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libDepictor.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libChemTransforms.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 98%] Built target rdMMPA
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
Scanning dependencies of target testReaction
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 98%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/testReaction.cpp
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target testReactionFingerprints
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 99%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp
In file included from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap/MolOps.cpp:31:0:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In destructor 'virtual boost_adaptbx::python::ostream::~ostream()':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:470:24: warning: throw will always call terminate() [-Wterminate]
" returning.");
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:470:24: note: in C++11 destructors default to noexcept
[ 99%] Linking CXX executable testReactionFingerprints
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -o testReactionFingerprints ../../../lib/libChemReactions.so.1.2016.03.5 ../../../lib/libDescriptors.so.1.2016.03.5 ../../../lib/libFingerprints.so.1.2016.03.5 ../../../lib/libSubgraphs.so.1.2016.03.5 ../../../lib/libChemTransforms.so.1.2016.03.5 ../../../lib/libDepictor.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libPartialCharges.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 99%] Built target testReactionFingerprints
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
Scanning dependencies of target rdChemReactions
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 99%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++ -DRDK_32BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/usr/include/python2.7 -I/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -fPIC -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp
[ 99%] Linking CXX executable testMMFFForceField
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -rdynamic CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -o testMMFFForceField ../../../lib/libDistGeomHelpers.so.1.2016.03.5 ../../../lib/libDistGeometry.so.1.2016.03.5 ../../../lib/libForceFieldHelpers.so.1.2016.03.5 ../../../lib/libForceField.so.1.2016.03.5 ../../../lib/libFileParsers.so.1.2016.03.5 ../../../lib/libSmilesParse.so.1.2016.03.5 ../../../lib/libMolAlign.so.1.2016.03.5 ../../../lib/libOptimizer.so.1.2016.03.5 ../../../lib/libAlignment.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread ../../../lib/libMolTransforms.so.1.2016.03.5 ../../../lib/libEigenSolvers.so.1.2016.03.5 ../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../lib/libGraphMol.so.1.2016.03.5 ../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../lib/libDataStructs.so.1.2016.03.5 ../../../lib/libRDGeneral.so.1.2016.03.5 -lboost_thread -lboost_system -lpthread
make[4]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 99%] Built target testMMFFForceField
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In constructor 'boost_adaptbx::python::streambuf::streambuf(boost::python::api::object&, std::size_t)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:184:56: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
off_type py_pos = bp::extract<off_type>(py_tell());
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:154:58: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
off_type py_pos = bp::extract<off_type>(py_tell());
^
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h: In member function 'virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(boost_adaptbx::python::streambuf::off_type, std::ios_base::seekdir, std::ios_base::openmode)':
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h:335:16: warning: '*((void*)&<anonymous> +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
result = off_type(bp::extract<off_type>(py_tell()));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/testReaction.cpp:34:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = RDGeom::Point3D; _Alloc = std::allocator<RDGeom::Point3D>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<RDGeom::Point3D>::iterator {aka __gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h:20,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h:21,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h:14,
from /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/testReaction.cpp:34:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void RDKit::Conformer::setAtomPos(unsigned int, const RDGeom::Point3D&)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In constructor 'RDKit::Conformer::Conformer(unsigned int)':
/usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RDGeom::Point3D*, std::vector<RDGeom::Point3D> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[100%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1
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/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/rdkit-201603.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wall -Wextra -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o ../../../../lib/libChemReactions.so.1.2016.03.5 ../../../../lib/libChemTransforms.so.1.2016.03.5 ../../../../lib/libDescriptors.so.1.2016.03.5 ../../../../lib/libFingerprints.so.1.2016.03.5 ../../../../lib/libSubgraphs.so.1.2016.03.5 ../../../../lib/libDepictor.so.1.2016.03.5 ../../../../lib/libFileParsers.so.1.2016.03.5 ../../../../lib/libSmilesParse.so.1.2016.03.5 ../../../../lib/libSubstructMatch.so.1.2016.03.5 ../../../../lib/libRDBoost.so.1.2016.03.5 -lpython2.7 -lboost_python -lboost_thread -lboost_system -lboost_chrono -lboost_date_time -lboost_atomic -lpthread -lboost_serialization ../../../../lib/libPartialCharges.so.1.2016.03.5 ../../../../lib/libGraphMol.so.1.2016.03.5 ../../../../lib/libRDGeometryLib.so.1.2016.03.5 ../../../../lib/libDataStructs.so.1.2016.03.5 ../../../../lib/libRDGeneral.so.1.2016.03.5 -lpthread -lboost_thread -lboost_system
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Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/MACCS.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/MorganFingerprints.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/MorganFingerprints.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Composition2N.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Composition2N.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/DebugTrace.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/DebugTrace.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/DuplicatedSeedCache.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/DuplicatedSeedCache.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/FMCS.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/FMCS.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Graph.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Graph.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/MatchTable.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/MatchTable.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/MaximumCommonSubgraph.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/MaximumCommonSubgraph.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/RingMatchTableSet.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/RingMatchTableSet.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Seed.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Seed.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/SeedSet.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/SeedSet.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/SubstructMatchCustom.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/SubstructMatchCustom.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/SubstructureCache.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/SubstructureCache.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Target.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Target.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/TargetMatch.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/TargetMatch.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/MMFF.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/MMFF.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/Builder.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/Builder.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/UFF.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/UFF.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragCatalogEntry.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragCatalogEntry.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragCatalogUtils.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragCatalogUtils.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragCatParams.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragCatParams.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragFPGenerator.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/FragFPGenerator.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/GraphMol.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/GraphMol.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MMPA/MMPA.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MMPA/MMPA.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/AlignMolecules.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/AlignMolecules.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/O3AAlignMolecules.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/O3AAlignMolecules.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolCatalog/MolCatalog.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolCatalog/MolCatalog.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolCatalog/MolCatalogEntry.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolCatalog/MolCatalogEntry.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolCatalog/MolCatalogParams.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolCatalog/MolCatalogParams.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DCairo.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DCairo.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DQt.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DQt.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DSVG.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DSVG.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DUtils.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DUtils.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2Dwx.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/MolDraw2Dwx.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDrawing/DrawingToCairo.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDrawing/DrawingToCairo.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDrawing/DrawingToSVG.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDrawing/DrawingToSVG.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDrawing/MolDrawing.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDrawing/MolDrawing.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolHash/MolHash.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolHash/MolHash.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolOps.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolOps.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolPickler.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolPickler.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolTransforms/MolTransforms.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolTransforms/MolTransforms.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MonomerInfo.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MonomerInfo.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/new_canon.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/new_canon.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges/GasteigerCharges.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges/GasteigerCharges.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges/GasteigerParams.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges/GasteigerParams.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PeriodicTable.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PeriodicTable.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/QueryAtom.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/QueryAtom.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/QueryBond.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/QueryBond.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/QueryOps.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/QueryOps.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitBase.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitQueries.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RDKitQueries.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Resonance.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Resonance.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RingInfo.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RingInfo.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Rings.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Rings.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ROMol.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RWMol.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/RWMol.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SanitException.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SanitException.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers/ShapeEncoder.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers/ShapeEncoder.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse/SLNAttribs.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse/SLNAttribs.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse/SLNParse.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse/SLNParse.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse/SLNParseOps.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse/SLNParseOps.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/primes.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/primes.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/SmartsWrite.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/SmartsWrite.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/SmilesParse.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/SmilesParse.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/SmilesParseOps.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/SmilesParseOps.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/SmilesWrite.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse/SmilesWrite.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs/Subgraphs.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs/Subgraphs.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Substruct/SubstructMatch.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Substruct/SubstructMatch.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Substruct/SubstructUtils.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Substruct/SubstructUtils.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Catalogs/Catalog.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Catalogs/Catalog.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Catalogs/CatalogEntry.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Catalogs/CatalogEntry.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Catalogs/CatalogParams.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Catalogs/CatalogParams.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/base64.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/base64.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/BitOps.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/BitOps.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/BitVect.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/BitVect.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/BitVects.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/BitVects.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/BitVectUtils.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/BitVectUtils.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/DatastructsException.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/DatastructsException.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/DiscreteDistMat.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/DiscreteDistMat.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/DiscreteValueVect.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/DiscreteValueVect.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/ExplicitBitVect.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/ExplicitBitVect.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/FPBReader.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/FPBReader.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/SparseBitVect.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/SparseBitVect.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/SparseIntVect.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/SparseIntVect.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/AndQuery.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/AndQuery.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/EqualityQuery.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/EqualityQuery.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/GreaterEqualQuery.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/GreaterEqualQuery.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/GreaterQuery.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/GreaterQuery.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/LessEqualQuery.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/LessEqualQuery.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/LessQuery.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/LessQuery.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/OrQuery.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/OrQuery.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/Query.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/QueryObjects.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/RangeQuery.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/RangeQuery.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/SetQuery.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/SetQuery.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/XOrQuery.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query/XOrQuery.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/CorrMatGenerator.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/CorrMatGenerator.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/InfoBitRanker.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/InfoBitRanker.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/InfoGainFuncs.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/InfoGainFuncs.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataManip/MetricMatrixCalc/MetricFuncs.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataManip/MetricMatrixCalc/MetricFuncs.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataManip/MetricMatrixCalc/MetricMatrixCalc.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataManip/MetricMatrixCalc/MetricMatrixCalc.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/SimDivPickers/DistPicker.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/SimDivPickers/DistPicker.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/SimDivPickers/HierarchicalClusterPicker.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/SimDivPickers/HierarchicalClusterPicker.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/SimDivPickers/MaxMinPicker.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/SimDivPickers/MaxMinPicker.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/BadFileException.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/BadFileException.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/BoostEndInclude.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/BoostEndInclude.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/BoostStartInclude.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/BoostStartInclude.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Dict.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Exceptions.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Exceptions.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/FileParseException.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/FileParseException.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/hanoiSort.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/hanoiSort.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Invariant.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Invariant.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/LocaleSwitcher.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/LocaleSwitcher.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Ranking.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/Ranking.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/RDLog.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/RDLog.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/RDThreads.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/RDThreads.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/StreamOps.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/StreamOps.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/types.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/utils.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/versions.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDGeneral/versions.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/import_array.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/import_array.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/iterator_next.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/iterator_next.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/pyint_api.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/pyint_api.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/PySequenceHolder.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/python_streambuf.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/BoundsMatrix.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/BoundsMatrix.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/ChiralSet.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/ChiralSet.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/ChiralViolationContrib.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/ChiralViolationContrib.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/DistGeomUtils.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/DistGeomUtils.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/DistViolationContrib.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/DistViolationContrib.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/FourthDimContrib.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/FourthDimContrib.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/TriangleSmooth.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/TriangleSmooth.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/Contrib.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/Contrib.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/ForceField.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/ForceField.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/AngleBend.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/AngleBend.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/AngleConstraint.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/AngleConstraint.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/BondStretch.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/BondStretch.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Contribs.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Contribs.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/DistanceConstraint.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/DistanceConstraint.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Nonbonded.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Nonbonded.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/OopBend.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/OopBend.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Params.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Params.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/PositionConstraint.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/PositionConstraint.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/StretchBend.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/StretchBend.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/TorsionAngle.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/TorsionAngle.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/TorsionConstraint.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/TorsionConstraint.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/AngleBend.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/AngleBend.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/AngleConstraint.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/AngleConstraint.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/BondStretch.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/BondStretch.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/Contribs.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/Contribs.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/DistanceConstraint.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/DistanceConstraint.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/Inversion.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/Inversion.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/Nonbonded.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Co/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Contribs.h:14: warning: the name `Contribs.h' supplied as the second argument in the \file statement matches the following input files:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Contribs.h
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/Contribs.h
Please use a more specific name by including a (larger) part of the path!
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/Contribs.h:12: warning: the name `Contribs.h' supplied as the second argument in the \file statement matches the following input files:
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Contribs.h
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/Contribs.h
Please use a more specific name by including a (larger) part of the path!
de/ForceField/UFF/Nonbonded.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/Params.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/Params.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/PositionConstraint.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/PositionConstraint.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/TorsionAngle.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/TorsionAngle.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/TorsionConstraint.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/TorsionConstraint.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Alignment/AlignPoints.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Alignment/AlignPoints.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/EigenSolvers/PowerEigenSolver.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/EigenSolvers/PowerEigenSolver.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Matrix.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Matrix.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Optimizer/BFGSOpt.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Optimizer/BFGSOpt.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/SquareMatrix.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/SquareMatrix.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/SymmMatrix.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/SymmMatrix.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Vector.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Vector.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Grid3D.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Grid3D.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/GridUtils.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/GridUtils.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/point.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Transform.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Transform.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Transform2D.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Transform2D.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Transform3D.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Transform3D.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/UniformGrid3D.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/UniformGrid3D.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Utils.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Utils.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Features/Feature.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Features/Feature.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ChemicalFeatures/ChemicalFeature.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ChemicalFeatures/ChemicalFeature.h...
Preprocessing /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ChemicalFeatures/FreeChemicalFeature.h...
Parsing file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ChemicalFeatures/FreeChemicalFeature.h...
Building group list...
Building directory list...
Building namespace list...
Building file list...
Building class list...
Associating documentation with classes...
Computing nesting relations for classes...
Building examp/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Bond.h:356: warning: Found unknown command `\Overload'
le list...
Searching for enumerations...
Searching for documented typedefs...
Searching for members imported via using declarations...
Searching for included using directives...
Searching for documented variables...
Building interface member list...
Building member list...
Searching for friends...
Searching for documented defines...
Computing class inheritance relations...
Computing class usage relations...
Flushing cached template relations that have become invalid...
Computing class relations...
Add enum values to enums...
Searching for member function documentation...
Creating members for template instances...
Building page list...
Search for main page...
Computing page relations...
Determining the scope of groups...
Sorting lists...
Freeing entry tree
Determining which enums are documented
Computing member relations...
Building full member lists recursively...
Adding members to member groups.
Computing member references...
Inheriting documentation...
Generating disk names...
Adding source references...
Adding xrefitems...
Sorting member lists...
Computing dependencies between directories...
Generating citations page...
Counting data structures...
Resolving user defined references...
Finding anchors and sections in the documentation...
Transferring function references...
Combining using relations...
Adding members to index pages...
Generating style sheet...
Generating search indices...
Generating example documentation...
Generating file sources...
Generating code for file AlignMolecules.h...
Generating code for file AlignPoints.h...
Generating code for file AndQuery.h...
Generating code for file AngleBend.h...
Generating code for file AngleBend.h...
Generating code for file AngleConstraint.h...
Generating code for file AngleConstraint.h...
Generating code for file Atom.h...
Generating code for file atomic_data.h...
Generating code for file AtomIterators.h...
Generating code for file AtomPairs.h...
Generating code for file AtomTyper.h...
Generating code for file AtomTyper.h...
Generating code for file BadFileException.h...
Generating code for file base64.h...
Generating code for file BFGSOpt.h...
Generating code for file BitOps.h...
Generating code for file BitVect.h...
Generating code for file BitVects.h...
Generating code for file BitVectUtils.h...
Generating code for file Bond.h...
Generating code for file BondIterators.h...
Generating code for file BondStretch.h...
Generating code for file BondStretch.h...
Generating code for file BoostEndInclude.h...
Generating code for file BoostStartInclude.h...
Generating code for file BoundsMatrix.h...
Generating code for file BoundsMatrixBuilder.h...
Generating code for file Builder.h...
Generating code for file Builder.h...
Generating code for file Canon.h...
Generating code for file Catalog.h...
Generating code for file CatalogEntry.h...
Generating code for file CatalogParams.h...
Generating code for file ChemicalFeature.h...
Generating code for file ChemTransforms.h...
Generating code for file Chirality.h...
Generating code for file ChiralSet.h...
Generating code for file ChiralViolationContrib.h...
Generating code for file Composition2N.h...
Generating code for file Conformer.h...
Generating code for file ConnectivityDescriptors.h...
Generating code for file Contrib.h...
Generating code for file Contribs.h...
Generating code for file Contribs.h...
Generating code for file CorrMatGenerator.h...
Generating code for file Crippen.h...
Generating code for file DatastructsException.h...
Generating code for file DebugTrace.h...
Generating code for file DepictUtils.h...
Generating code for file details.h...
Generating code for file Dict.h...
Generating code for file DiscreteDistMat.h...
Generating code for file DiscreteValueVect.h...
Generating code for file DistanceConstraint.h...
Generating code for file DistanceConstraint.h...
Generating code for file DistGeomUtils.h...
Generating code for file DistPicker.h...
Generating code for file DistViolationContrib.h...
Generating code for file DrawingToCairo.h...
Generating code for file DrawingToSVG.h...
Generating code for file DuplicatedSeedCache.h...
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Generating code for file PowerEige/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/BitOps.h:173: warning: found </c> at different nesting level (7) than expected (4)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/BitOps.h:174: warning: end of comment block while expecting command </code>
nSolver.h...
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Generati/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/AngleBend.h:30: warning: argument 'angleType' of command @param is not found in the argument list of ForceFields::MMFF::AngleBendContrib::AngleBendContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, const MMFFAngle *mmffAngleParams, const MMFFProp *mmffPropParamsCentralAtom)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/AngleBend.h:39: warning: The following parameters of ForceFields::MMFF::AngleBendContrib::AngleBendContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, const MMFFAngle *mmffAngleParams, const MMFFProp *mmffPropParamsCentralAtom) are not documented:
parameter 'mmffAngleParams'
parameter 'mmffPropParamsCentralAtom'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/AngleConstraint.h:26: warning: argument 'minAngle' of command @param is not found in the argument list of ForceFields::MMFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/AngleConstraint.h:26: warning: argument 'maxAngle' of command @param is not found in the argument list of ForceFields::MMFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/AngleConstraint.h:35: warning: The following parameters of ForceFields::MMFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) are not documented:
parameter 'minAngleDeg'
parameter 'maxAngleDeg'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/BondStretch.h:27: warning: argument 'bondType' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/BondStretch.h:27: warning: argument 'end1Params' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/BondStretch.h:27: warning: argument 'end2Params' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/BondStretch.h:35: warning: The following parameters of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) are not documented:
parameter 'mmffBondParams'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Nonbonded.h:58: warning: The following parameters of ForceFields::MMFF::EleContrib::EleContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, double chargeTerm, boost::uint8_t dielModel, bool is1_4) are not documented:
parameter 'chargeTerm'
parameter 'dielModel'
parameter 'is1_4'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Params.h:160: warning: argument 'mmffArom' of command @param is not found in the argument list of ForceFields::MMFF::MMFFAromCollection::getMMFFArom(const boost::uint8_t *aromatic_types=NULL)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Params.h:176: warning: The following parameters of ForceFields::MMFF::MMFFAromCollection::getMMFFArom(const boost::uint8_t *aromatic_types=NULL) are not documented:
parameter 'aromatic_types'
ng docs for file SubstructMatchCustom.h...
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Generating docs fo/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Params.h:1085: warning: The following parameters of ForceFields::MMFF::MMFFOopCollection::getMMFFOop(const bool isMMFFs=false, const std::string &mmffOop="") are not documented:
parameter 'isMMFFs'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Params.h:1214: warning: The following parameters of ForceFields::MMFF::MMFFTorCollection::getMMFFTor(const bool isMMFFs, const std::string &mmffTor="") are not documented:
parameter 'isMMFFs'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/PositionConstraint.h:27: warning: argument 'minDispl' of command @param is not found in the argument list of ForceFields::MMFF::PositionConstraintContrib::PositionConstraintContrib(ForceField *owner, unsigned int idx, double maxDispl, double forceConst)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/StretchBend.h:31: warning: argument 'angleType' of command @param is not found in the argument list of ForceFields::MMFF::StretchBendContrib::StretchBendContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const unsigned int idx3, const MMFFStbn *mmffStbnParams, const MMFFAngle *mmffAngleParams, const MMFFBond *mmffBondParams1, const MMFFBond *mmffBondParams2)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/StretchBend.h:40: warning: The following parameters of ForceFields::MMFF::StretchBendContrib::StretchBendContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const unsigned int idx3, const MMFFStbn *mmffStbnParams, const MMFFAngle *mmffAngleParams, const MMFFBond *mmffBondParams1, const MMFFBond *mmffBondParams2) are not documented:
parameter 'mmffStbnParams'
parameter 'mmffAngleParams'
parameter 'mmffBondParams1'
parameter 'mmffBondParams2'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/TorsionAngle.h:33: warning: argument 'torsionType' of command @param is not found in the argument list of ForceFields::MMFF::TorsionAngleContrib::TorsionAngleContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, const MMFFTor *mmffTorParams)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/TorsionAngle.h:44: warning: The following parameters of ForceFields::MMFF::TorsionAngleContrib::TorsionAngleContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, const MMFFTor *mmffTorParams) are not documented:
parameter 'mmffTorParams'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF/Nonbonded.h:34: warning: The following parameters of ForceFields::MMFF::VdWContrib::VdWContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, const MMFFVdWRijstarEps *mmffVdWConstants) are not documented:
parameter 'mmffVdWConstants'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/AngleConstraint.h:26: warning: argument 'minAngle' of command @param is not found in the argument list of ForceFields::UFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/AngleConstraint.h:26: warning: argument 'maxAngle' of command @param is not found in the argument list of ForceFields::UFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/AngleConstraint.h:35: warning: The following parameters of ForceFields::UFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) are not documented:
parameter 'minAngleDeg'
parameter 'maxAngleDeg'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF/PositionConstraint.h:27: warning: argument 'minDispl' of command @param is not found in the argument list of ForceFields::UFF::PositionConstraintContrib::PositionConstraintContrib(ForceField *owner, unsigned int idx, double maxDispl, double forceConst)
r compound ForceFields::MMFF::MMFFDef...
Generating docs for compound ForceFields::MMFF::MMFFDefCollection...
Generating docs for compound ForceFields::MMFF::MMFFDfsbCollection...
Generating docs for compound ForceFields::MMFF::MMFFHerschbachLaurie...
Generating docs for compound ForceFields::MMFF::MMFFHerschbachLaurieCollection...
Generating docs for compound ForceFields::MMFF::MMFFOop...
Generating docs for compound ForceFields::MMFF::MMFFOopCollection...
Generating docs for compound ForceFields::MMFF::MMFFPBCI...
Generating docs for compound ForceFields::MMFF::MMFFPBCICollection...
Generating docs for compound ForceFields::MMFF::MMFFProp...
Generating docs for compound ForceFields::MMFF::MMFFPropCollection...
Generating docs for compound ForceFields::MMFF::MMFFStbn...
Generating docs for compound ForceFields::MMFF::MMFFStbnCollection...
Generating docs for compound ForceFields::MMFF::MMFFTor...
Generating docs for compound ForceFields::MMFF::MMFFTorCollection...
Generating docs for compound ForceFields::MMFF::MMFFVdW...
Generating docs for compound ForceFields::MMFF::MMFFVdWCollection...
Generating docs for compound ForceFields::MMFF::MMFFVdWRijstarEps...
Generating docs for compound ForceFields::MMFF::OopBendContrib...
Generating docs for compound ForceFields::MMFF::PositionConstraintContrib...
Generating docs for compound ForceFields::MMFF::StretchBendContrib...
Generating docs for compound ForceFields::MMFF::TorsionAngleContrib...
Generating docs for compound ForceFields::MMFF::TorsionConstraintContrib...
Generating docs for compound ForceFields::MMFF::VdWContrib...
Generating docs for namespace ForceFields::MMFF::Utils
Generating docs for namespace ForceFields::UFF
Generating docs for compound ForceFields::UFF::AngleBendContrib...
Generating docs for compound ForceFields::UFF::AngleConstraintContrib...
Generating docs for compound ForceFields::UFF::AtomicParams...
Generating docs for compound ForceFields::UFF::BondStretchContrib...
Generating docs for compound ForceFields::UFF::DistanceConstraintContrib...
Generating docs for compound ForceFields::UFF::InversionContrib...
Generating docs for compound ForceFields::UFF::ParamCollection...
Generating docs for compound ForceFields::UFF::PositionConstraintContrib...
Generating docs for compound ForceFields::UFF::TorsionAngleContrib...
Generating docs for compound ForceFields::UFF::TorsionConstraintContrib...
Generating docs for compound ForceFields::UFF::UFFAngle...
Generating docs for compound ForceFields::UFF::UFFBond...
Generating docs for compound ForceFields::UFF::UFFInv...
Generating docs for compound ForceFields::UFF::UFFTor...
Generating docs for compound ForceFields::UFF::UFFVdW...
Generating docs for compound ForceFields::UFF::vdWContrib...
Generating docs for namespace ForceFields::UFF::Params
Generating docs for namespace ForceFields::UFF::Utils
Generating docs for namespace Invar
Generating docs for compound Invar::Invariant...
Generating docs for namespace MolTransforms
Generating docs for namespace Queries
Generating docs for compound Queries::AndQuery...
Generating docs for compound Queries::EqualityQuery...
Generating docs for compound Queries::GreaterEqualQuery...
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Generating docs for compound Queries::LessQuery...
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Generating docs for namespace Rankers
Generating docs for compound Rankers::argless...
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Generating docs for namespace RDCatalog
Generating docs for compound RDCatalog::Catalog...
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Generating docs for compound RDCatalog::CatalogParams...
Generating docs for compound RDCatalog::HierarchCat/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/SequenceParsers.h:51: warning: argument 'seq' of command @param is not found in the argument list of RDKit::HELMToMol(const char *helm, bool sanitize=true)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/SequenceParsers.h:56: warning: The following parameters of RDKit::HELMToMol(const char *helm, bool sanitize=true) are not documented:
parameter 'helm'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h:104: warning: The following parameters of RDKit::LayeredFingerprintMol(const ROMol &mol, unsigned int layerFlags=0xFFFFFFFF, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, std::vector< unsigned int > *atomCounts=0, ExplicitBitVect *setOnlyBits=0, bool branchedPaths=true, const std::vector< boost::uint32_t > *fromAtoms=0) are not documented:
parameter 'fromAtoms'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/FileParsers.h:228: warning: argument 'fName' of command @param is not found in the argument list of RDKit::MolToPDBFile(const ROMol &mol, const std::string &fname, int confId=-1, unsigned int flavor=0)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/FileParsers.h:239: warning: The following parameters of RDKit::MolToPDBFile(const ROMol &mol, const std::string &fname, int confId=-1, unsigned int flavor=0) are not documented:
parameter 'fname'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:183: warning: argument 'delimiter' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:183: warning: argument 'comment' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:183: warning: argument 'nameColumn' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:183: warning: argument 'smartsColumn' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h:25: warning: argument 'useBondOrders' of command @param is not found in the argument list of RDKit::RDKFingerprintMol(const ROMol &mol, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, unsigned int nBitsPerHash=2, bool useHs=true, double tgtDensity=0.0, unsigned int minSize=128, bool branchedPaths=true, bool useBondOrder=true, std::vector< boost::uint32_t > *atomInvariants=0, const std::vector< boost::uint32_t > *fromAtoms=0, std::vector< std::vector< boost::uint32_t > > *atomBits=0, std::map< boost::uint32_t, std::vector< std::vector< int > > > *bitInfo=0)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h:52: warning: The following parameters of RDKit::RDKFingerprintMol(const ROMol &mol, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, unsigned int nBitsPerHash=2, bool useHs=true, double tgtDensity=0.0, unsigned int minSize=128, bool branchedPaths=true, bool useBondOrder=true, std::vector< boost::uint32_t > *atomInvariants=0, const std::vector< boost::uint32_t > *fromAtoms=0, std::vector< std::vector< boost::uint32_t > > *atomBits=0, std::map< boost::uint32_t, std::vector< std::vector< int > > > *bitInfo=0) are not documented:
parameter 'useBondOrder'
parameter 'bitInfo'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h:93: warning: The following parameters of RDKit::reduceProductToSideChains(const ROMOL_SPTR &product, bool addDummyAtoms=true) are not documented:
parameter 'product'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h:61: warning: argument 'reactantTemplateIdx' of command @param is not found in the argument list of RDKit::run_Reactant(const ChemicalReaction &rxn, const ROMOL_SPTR &reactant, unsigned int reactantIdx)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h:74: warning: The following parameters of RDKit::run_Reactant(const ChemicalReaction &rxn, const ROMOL_SPTR &reactant, unsigned int reactantIdx) are not documented:
parameter 'rxn'
parameter 'reactantIdx'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Bond.h:356: warning: Found unknown command `\Overload'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Bond.h:356: warning: Found unknown command `\Overload'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:414: warning: argument 'matches' of command @param is not found in the argument list of RDKit::ExclusionList::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 92 in file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:414: warning: The following parameters of RDKit::ExclusionList::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented:
parameter 'matchVect'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h:92: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatcherBase::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const=0
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h:98: warning: The following parameters of RDKit::FilterMatcherBase::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const=0 are not documented:
parameter 'matchVect'
alog...
Generating docs for nested compound RDCatalog::HierarchCatalog::vertex_entry_t...
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Generating docs for compound RDKit::MolCatalogEntr/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Bond.h:356: warning: Found unknown command `\Overload'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Resonance.h:55: warning: argument 'numThreads' of command @param is not found in the argument list of RDKit::ResonanceMolSupplier::ResonanceMolSupplier(ROMol &mol, unsigned int flags=0, unsigned int maxStructs=1000)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:321: warning: argument 'matches' of command @param is not found in the argument list of RDKit::SmartsMatcher::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 92 in file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:321: warning: The following parameters of RDKit::SmartsMatcher::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented:
parameter 'matchVect'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:195: warning: argument 'delimiter' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:195: warning: argument 'smilesColumn' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:195: warning: argument 'nameColumn' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:195: warning: argument 'titleLine' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:195: warning: argument 'sanitize' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/AtomPairs.h:160: warning: The following parameters of RDKit::AtomPairs::getHashedAtomPairFingerprint(const ROMol &mol, unsigned int nBits=2048, unsigned int minLength=1, unsigned int maxLength=maxPathLen - 1, const std::vector< boost::uint32_t > *fromAtoms=0, const std::vector< boost::uint32_t > *ignoreAtoms=0, const std::vector< boost::uint32_t > *atomInvariants=0, bool includeChirality=false, bool use2D=true, int confId=-1) are not documented:
parameter 'confId'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/AtomPairs.h:210: warning: The following parameters of RDKit::AtomPairs::getTopologicalTorsionCode(const std::vector< boost::uint32_t > &atomCodes, bool includeChirality=false) are not documented:
parameter 'includeChirality'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Canon.h:110: warning: The following parameters of RDKit::Canon::canonicalizeFragment(ROMol &mol, int atomIdx, std::vector< AtomColors > &colors, const std::vector< unsigned int > &ranks, MolStack &molStack, const boost::dynamic_bitset<> *bondsInPlay=0, const std::vector< std::string > *bondSymbols=0, bool doIsomericSmiles=false) are not documented:
parameter 'bondsInPlay'
parameter 'bondSymbols'
parameter 'doIsomericSmiles'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors/Lipinski.h:42: warning: argument 'strict' of command @param is not found in the argument list of RDKit::Descriptors::calcNumRotatableBonds(const ROMol &mol, NumRotatableBondsOptions useStrictDefinition=Default)
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors/Lipinski.h:49: warning: The following parameters of RDKit::Descriptors::calcNumRotatableBonds(const ROMol &mol, NumRotatableBondsOptions useStrictDefinition=Default) are not documented:
parameter 'useStrictDefinition'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:85: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::And::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 92 in file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:85: warning: The following parameters of RDKit::FilterMatchOps::And::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented:
parameter 'matchVect'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:203: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::Not::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 92 in file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:203: warning: The following parameters of RDKit::FilterMatchOps::Not::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented:
parameter 'matchVect'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:147: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::Or::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 92 in file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:147: warning: The following parameters of RDKit::FilterMatchOps::Or::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented:
parameter 'matchVect'
y...
Generating docs for compound RDKit::MolCatalogParams...
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Generating docs for namespace RDKit::DGeomHelpers
Generating docs for namespace RDKit::Drawing
Generating docs for namespace RDKit::Drawing::detail
Generating docs for namespace RDKit::FileParserUtils
Generating docs for namespace RDKit::FilterMatchOps
Generating docs for compound RDKit::FilterMatchOps::And...
Generating docs for compound RDKit::FilterMatchOps::Not...
Generating docs for compound RDKit::FilterMatchOps::Or...
Generating docs for namespace RDKit::FMCS
Generating docs for compound RDKit::FMCS::Composition2N...
Generating docs for compound RDKit::FMCS::DuplicatedSeedCache...
Generating docs for nested compound RDKit::FMCS::DuplicatedSeedCache::TKey...
Generating docs for compound RDKit::FMCS::ExecStatistics...
Generating docs for compound RDKit::FMCS::Graph...
Generating docs for compound RDKit::FMCS::MaximumCommonSubgraph...
Generating docs for compound RDKit::FMCS::MolFragment...
Generating docs for compound RDKit::FMCS::NewBond...
Gene/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MMPA/MMPA.h:35: warning: The following parameters of RDKit::MMPA::fragmentMol(const ROMol &mol, std::vector< std::pair< ROMOL_SPTR, ROMOL_SPTR > > &result, unsigned int maxCuts=3, unsigned int maxCutBonds=20, const std::string &pattern="[#6+0;!$(*=,#[!#6])]!@!=!#[*]") are not documented:
parameter 'pattern'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolOps.h:577: warning: The following parameters of RDKit::MolOps::getAdjacencyMatrix(const ROMol &mol, bool useBO=false, int emptyVal=0, bool force=false, const char *propNamePrefix=0, const boost::dynamic_bitset<> *bondsToUse=0) are not documented:
parameter 'bondsToUse'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolOps.h:239: warning: The following parameters of RDKit::MolOps::mergeQueryHs(const ROMol &mol, bool mergeUnmappedOnly=false) are not documented:
parameter 'mergeUnmappedOnly'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints/MorganFingerprints.h:152: warning: The following parameters of RDKit::MorganFingerprints::getHashedFingerprint(const ROMol &mol, unsigned int radius, unsigned int nBits=2048, std::vector< boost::uint32_t > *invariants=0, const std::vector< boost::uint32_t > *fromAtoms=0, bool useChirality=false, bool useBondTypes=true, bool onlyNonzeroInvariants=false, BitInfoMap *atomsSettingBits=0) are not documented:
parameter 'nBits'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.h:33: warning: The following parameters of RDKit::ReducedGraphs::generateMolExtendedReducedGraph(const ROMol &mol, std::vector< boost::dynamic_bitset<> > *atomTypes=0) are not documented:
parameter 'atomTypes'
/<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/SimDivPickers/HierarchicalClusterPicker.h:79: warning: The following parameters of RDPickers::HierarchicalClusterPicker::pick(const double *distMat, unsigned int poolSize, unsigned int pickSize) const are not documented:
parameter 'distMat'
rating docs for compound RDKit::FMCS::RingMatchTableSet...
Generating docs for compound RDKit::FMCS::Seed...
Generating docs for compound RDKit::FMCS::SeedSet...
Generating docs for compound RDKit::FMCS::SubstructureCache...
Generating docs for nested compound RDKit::FMCS::SubstructureCache::HashKey...
Generating docs for nested compound RDKit::FMCS::SubstructureCache::KeyNumericMetrics...
Generating docs for compound RDKit::FMCS::Target...
Generating docs for compound RDKit::FMCS::TargetMatch...
Generating docs for compound RDKit::FMCS::TArray2D...
Generating docs for namespace RDKit::Local
Generating docs for namespace RDKit::MACCSFingerprints
Generating docs for namespace RDKit::MMFF
Generating docs for compound RDKit::MMFF::MMFFAtomProperties...
Generating docs for compound RDKit::MMFF::MMFFMolProperties...
Generating docs for namespace RDKit::MMFF::Tools
Generating docs for namespace RDKit::MMPA
Generating docs for namespace RDKit::MolAlign
Generating docs for compound RDKit::MolAlign::LAP...
Generating docs for compound RDKit::MolAlign::MolAlignException...
Generating docs for compound RDKit::MolAlign::MolHistogram...
Generating docs for compound RDKit::MolAlign::O3A...
Generating docs for compound RDKit::MolAlign::O3AConstraint...
Generating docs for compound RDKit::MolAlign::O3AConstraintVect...
Generating docs for compound RDKit::MolAlign::O3AFuncData...
Generating docs for compound RDKit::MolAlign::SDM...
Generating docs for namespace RDKit::MolDraw2D_detail
Generating docs for namespace RDKit::MolDraw2DUtils
Generating docs for namespace RDKit::MolFragmenter
Generating docs for compound RDKit::MolFragmenter::FragmenterBondType...
Generating docs for namespace RDKit::MolHash
Generating docs for compound RDKit::MolHash::HashSet...
Generating docs for namespace RDKit::MolOps
Generating docs for compound RDKit::MolOps::AdjustQueryParameters...
Generating docs for namespace RDKit::MolShapes
Generating docs for namespace RDKit::MorganFingerprints
Generating docs for namespace RDKit::ReactionRunnerUtils
Generating docs for namespace RDKit::ReducedGraphs
Generating docs for namespace RDKit::SLNParse
Generating docs for compound RDKit::SLNParse::AttribType...
Generating docs for namespace RDKit::SmartsWrite
Generating docs for namespace RDKit::SmilesWrite
Generating docs for namespace RDKit::Subgraphs
Generating docs for namespace RDKit::UFF
Generating docs for namespace RDKit::UFF::Tools
Generating docs for namespace RDKit::Utils
Generating docs for compound RDKit::Utils::LocaleSwitcher...
Generating docs for namespace RDKit::Utils::detail
Generating docs for namespace RDLog
Generating docs for namespace RDNumeric
Generating docs for compound RDNumeric::Matrix...
Generating docs for compound RDNumeric::SquareMatrix...
Generating docs for compound RDNumeric::SymmMatrix...
Generating docs for compound RDNumeric::Vector...
Generating docs for namespace RDNumeric::Alignments
Generating docs for namespace RDNumeric::EigenSolvers
Generating docs for namespace RDPickers
Generating docs for compound RDPickers::DistPicker...
Generating docs for compound RDPickers::HierarchicalClusterPicker...
Generating docs for compound RDPickers::MaxMinPicker...
Generating docs for namespace RingUtils
Generating docs for namespace SmilesParseOps
Generating graph info page...
Generating directory documentation...
Generating index page...
Generating page index...
Generating module index...
Generating namespace index...
Generating namespace member index...
Generating annotated compound index...
Generating alphabetical compound index...
Generating hierarchical class index...
Generating member index...
Generating file index...
Generating file member index...
Generating example index...
finalizing index lists...
writing tag file...
lookup cache used 10576/65536 hits=80875 misses=11521
finished...
(cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit; epydoc --config epydoc.config)
[
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/__init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| ReducedGraphs.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/PyMol.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| FragmentMatcher.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/MCS.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/inchi.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| PropertyMol.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/MolCatalog.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/MACCSkeys.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| FunctionalGroups.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| GraphDescriptors.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| FragmentCatalog.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/SATIS.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/AllChem.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| FastSDMolSupplier.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| PandasTools.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Fragments.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Randomize.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/MolSurf.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Recap.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Lipinski.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| Descriptors.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| FeatFinderCLI.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| FilterCatalog.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Graphs.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/BRICS.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| TorsionFingerprints.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| BuildFragmentCatalog.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| SaltRemover.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| ChemicalFeatures.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/DSViewer.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Crippen.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/ShowMols.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| ChemicalForceFields.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| TemplateAlign.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/
| PeriodicTable.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Subshape/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Subshape/
| SubshapeBuilder.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Subshape/
| SubshapeAligner.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Subshape/
| BuilderUtils.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Subshape/
| SubshapeObjects.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/MolKey/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/MolKey/
| MolKey.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/MolKey/
| InchiInfo.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Scaffolds/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Scaffolds/
| MurckoScaffold.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/AtomPairs/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/AtomPairs/
| Pairs.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/AtomPairs/
| Sheridan.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/AtomPairs/
| Utils.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/AtomPairs/
| Torsions.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Pharm3D/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Pharm3D/
| Pharmacophore.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Pharm3D/
| EmbedLib.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Pharm3D/
| ExcludedVolume.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/ChemUtils/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/ChemUtils/
| TemplateExpand.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/ChemUtils/
| AlignDepict.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/ChemUtils/
| SDFToCSV.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/ChemUtils/
| BulkTester.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Suppliers/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Suppliers/
| DbMolSupplier.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Suppliers/
| MolSupplier.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Draw/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Draw/
| canvasbase.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Draw/
| MolDrawing.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Draw/
| SimilarityMaps.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Draw/
| cairoCanvas.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Draw/
| spingCanvas.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Draw/
| aggCanvas.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Draw/
| IPythonConsole.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Draw/
| qtCanvas.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Draw/
| mplCanvas.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Features/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Features/
| FeatDirUtilsRD.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Features/
| ShowFeats.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Fingerprints/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Fingerprints/
| ClusterMols.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Fingerprints/
| FingerprintMols.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Fingerprints/
| SimilarityScreener.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Fingerprints/
| MolSimilarity.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Fingerprints/
| DbFpSupplier.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Pharm2D/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.....
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Pharm2D/
| Matcher.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Pharm2D/
| Utils.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Pharm2D/
| SigFactory.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Pharm2D/
| LazyGenerator.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Pharm2D/
| Generate.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Pharm2D/
| Gobbi_Pharm2D.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/SimpleEnum/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/SimpleEnum/
| Enumerator.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/fmcs/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/fmcs/fmcs.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/FeatMaps/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/FeatMaps/
| FeatMapUtils.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/FeatMaps/
| FeatMapParser.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/FeatMaps/
| FeatMaps.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/FeatMaps/
| FeatMapPoint.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Fraggle/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/Fraggle/
| FraggleSim.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/EState/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/EState/
| Fingerprinter.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/EState/
| EState_VSA.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/EState/
| EState.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/EState/
| AtomTypes.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.......
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/MolDb/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/MolDb/
| Loader_orig.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/MolDb/
| Loader.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/MolDb/
| Loader_sa.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Chem/MolDb/
| FingerprintUtils.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/DataManip/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/DataManip/Metric/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/DataStructs/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/DataStructs/
| VectCollection.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/DataStructs/
| LazySignature.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/DataStructs/
| BitEnsemble.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/DataStructs/
| HierarchyVis.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/DataStructs/
| BitUtils.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/DataStructs/
| TopNContainer.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/DataStructs/
| BitEnsembleDb.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Dbase/__init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Dbase/
| DbConnection.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Dbase/DbReport.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Dbase/
| StorageUtils.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Dbase/
| DbResultSet.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Dbase/DbModule.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Dbase/DbInfo.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Dbase/DbUtils.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/DistanceGeometry/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ForceField/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Geometry/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/__init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/
| AnalyzeComposite.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/EnrichPlot.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/CompositeRun.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/
| GrowComposite.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/
| ScreenComposite.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/
| BuildComposite.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/files.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/MatOps.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/ModelPackage/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/ModelPackage/
| Packager.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/ModelPackage/
| PackageUtils.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/SLT/__init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/SLT/Risk.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/InfoTheory/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/InfoTheory/
| BitRank.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/InfoTheory/
| entropy.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/InfoTheory/
| BitClusterer.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Cluster/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Cluster/
| ClusterUtils.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Cluster/
| ClusterVis.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Cluster/
| Clusters.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Cluster/
| Resemblance.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Cluster/
| Murtagh.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Cluster/
| Standardize.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...........
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Cluster/
| Butina.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Neural/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Neural/
| Trainers.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Neural/
| ActFuncs.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Neural/
| NetNode.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Neural/
| Network.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Neural/
| CrossValidate.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/NaiveBayes/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/NaiveBayes/
| ClassificationModel.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/NaiveBayes/
| CrossValidate.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Composite/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Composite/
| BayesComposite.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Composite/
| Composite.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Composite/
| AdjustComposite.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Descriptors/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Descriptors/
| CompoundDescriptors.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Descriptors/
| Parser.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Descriptors/
| Descriptors.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Descriptors/
| MoleculeDescriptors.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Scoring/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Scoring/
| Scoring.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Data/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Data/
| DataUtils.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Data/
| Transforms.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Data/
| FindQuantBounds.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Data/Stats.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Data/
| Quantize.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Data/
| SplitData.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/Data/MLData.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/KNN/__init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/KNN/KNNModel.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/KNN/
| CrossValidate.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[..............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/KNN/
| KNNRegressionModel.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/KNN/
| DistFunctions.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/KNN/
| KNNClassificationModel.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/DecTree/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/DecTree/
| DecTree.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/DecTree/ID3.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/DecTree/Tree.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/DecTree/
| TreeVis.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/DecTree/
| SigTree.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/DecTree/
| Forest.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[...............
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/DecTree/
| BuildSigTree.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/DecTree/
| BuildQuantTree.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/DecTree/
| QuantTree.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/DecTree/
| TreeUtils.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/DecTree/
| CrossValidate.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/DecTree/
| PruneTree.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/MLUtils/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/ML/MLUtils/
| VoteImg.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Numerics/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[................
+---------------------------------------------------------------------
| In rdBase:
| No documentation available!
| Error: Import failed:
| ImportError: No module named rdBase
|
[................
+---------------------------------------------------------------------
| In RDConfig:
| No documentation available!
| Error: Import failed:
| ImportError: No module named rdkit.RDPaths (line 37)
|
Error: Two of the specified items, 'rdBase' and 'RDConfig', have the
same canonical name ("None"). This may mean that you
specified two different files that both use the same module
name. Ignoring the second item ('rdBase')
[................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/SimDivFilters/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/SimDivFilters/
| SimilarityPickers.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/VLib/__init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/VLib/Supply.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/VLib/Node.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/VLib/Output.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/VLib/Filter.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/VLib/Transform.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/VLib/NodeLib/
| __init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/VLib/NodeLib/
| SmilesDupeFilter.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/VLib/NodeLib/
| SDSupply.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/VLib/NodeLib/
| DbMolSupply.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/VLib/NodeLib/
| DbPickleSupplier.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/VLib/NodeLib/
| demo.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/VLib/NodeLib/
| SmartsMolFilter.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/VLib/NodeLib/
| SmartsRemover.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/VLib/NodeLib/
| SmilesOutput.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/VLib/NodeLib/
| SmilesSupply.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[.................
+---------------------------------------------------------------------
| In /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/Avalon/__init__.py:
| Import failed (but source code parsing was successful).
| Error: ImportError: No module named rdBase (line 2)
|
[....................
Warning: No information available for
rdkit.Chem.ChemUtils.SDFToCSV.TestCase's base
unittest.TestCase
[....................
Warning: No information available for
rdkit.Chem.FastSDMolSupplier.FastSDMolSupplier's base
rdkit.Chem.SDMolSupplier
[....................
Warning: No information available for
rdkit.Chem.FeatMaps.FeatMapPoint.FeatMapPoint's base
rdkit.Chem.ChemicalFeatures.FreeChemicalFeature
[....................
Warning: rdkit.Chem.MolDb.Loader_sa.Compound's base declarative_base()
is not a class
[....................
Warning: No information available for
rdkit.Chem.MolKey.InchiInfo.TestInchiInfo's base
unittest.TestCase
[....................
Warning: No information available for
rdkit.Chem.PropertyMol.PropertyMol's base rdkit.Chem.Mol
[................................
Warning: No information available for
rdkit.Chem.ChemUtils.SDFToCSV.TestCase's base
unittest.TestCase
[................................
Warning: No information available for
rdkit.Chem.FastSDMolSupplier.FastSDMolSupplier's base
rdkit.Chem.SDMolSupplier
[................................
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rdkit.Chem.FeatMaps.FeatMapPoint.FeatMapPoint's base
rdkit.Chem.ChemicalFeatures.FreeChemicalFeature
[................................
Warning: rdkit.Chem.MolDb.Loader_sa.Compound's base declarative_base()
is not a class
[................................
Warning: No information available for
rdkit.Chem.MolKey.InchiInfo.TestInchiInfo's base
unittest.TestCase
[................................
Warning: No information available for
rdkit.Chem.PropertyMol.PropertyMol's base rdkit.Chem.Mol
[.........................................................................]
(cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/Docs/Book; RDBASE=/<<BUILDDIR>>/rdkit-201603.5+dfsg /usr/bin/make html)
make[2]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/Docs/Book'
mkdir -p _build/html/api
mkdir -p _build/html/cppapi
cp /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/docs/* _build/html/api
cp -r /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/docs/* _build/html/cppapi
pandoc -t rst -f markdown_github -o Overview.rst Overview.md
pandoc -t rst -f markdown_github -o Cartridge.rst Cartridge.md
pandoc -t rst -f markdown_github -o Cookbook.rst Cookbook.md
pandoc -t rst -f markdown_github -o Install.rst Install.md
sphinx-build -b html -d _build/doctrees . _build/html
Running Sphinx v1.6.5
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done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 3 warnings.
Build finished. The HTML pages are in _build/html.
make[2]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/Docs/Book'
(cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/Docs/Book; RDBASE=/<<BUILDDIR>>/rdkit-201603.5+dfsg /usr/bin/make latexpdf)
make[2]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/Docs/Book'
mkdir -p _build/html/api
mkdir -p _build/html/cppapi
cp /<<BUILDDIR>>/rdkit-201603.5+dfsg/rdkit/docs/* _build/html/api
cp -r /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/docs/* _build/html/cppapi
sphinx-build -b latex -d _build/doctrees . _build/latex
Running Sphinx v1.6.5
making output directory...
Generating grammar tables from /usr/share/sphinx/pycode/Grammar-py2.txt
loading pickled environment... done
building [mo]: targets for 0 po files that are out of date
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updating environment: 0 added, 0 changed, 0 removed
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processing RDKit.tex...index Overview Install GettingStartedInPython RDKit_Book Cookbook Cartridge
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copying TeX support files...
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build succeeded.
Running LaTeX files through pdflatex...
make -C _build/latex all-pdf
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/Docs/Book/_build/latex'
latexmk -pdf -dvi- -ps- 'RDKit.tex'
Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41.
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Chapter 1.
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Chapter 2.
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Chapter 3.
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Chapter 4.
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Chapter 5.
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Chapter 6.
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Chapter 7.
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Chapter 2.
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[]\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq
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Chapter 3.
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[]\T1/ptm/m/n/10 More fine-grained con-trol can be ob-tained us-ing the core fu
nc-tion \T1/pcr/m/n/10 rdkit.Chem.rdDepictor.
[26 <./picture_2.png> <./picture_4.png>] [27] [28] [29 <./cdk2_mol1.png> <./cdk
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[31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42 <./similarity_map_fp
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[45] [46 <./similarity_map_charges.png>] [47 <./similarity_map_crippen.png>]
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[]\T1/ptm/m/n/10 Or we can use the bit rank-ing func-tion-al-ity from the \T1/p
cr/m/n/10 rdkit.ML.InfoTheory.rdInfoTheory.
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[]|\T1/ptm/m/n/10 Number of bridge-head atoms
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\T1/ptm/m/n/10 tions [][]$http : / / www . chemcomp . com /
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[]\T1/ptm/m/n/10 Acidic|
[62] [63 <./picture_5.png (PNG copy)>] [64]
Chapter 4.
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Chapter 5.
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[]\T1/ptm/m/n/10 IPython note-book: [][]$http : / / nbviewer . ipython . org /
gist / greglandrum / 8351725$[][] [][]$https : / / gist . github . com / gregla
ndrum /
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Chapter 6.
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Chapter 7.
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Chapter 1.
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Chapter 2.
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[]\T1/ptm/m/n/10 You can en-able sup-port for the Avalon toolkit by adding the
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for the in-stalled ver-sion of
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Chapter 3.
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[]\T1/ptm/m/n/10 More fine-grained con-trol can be ob-tained us-ing the core fu
nc-tion \T1/pcr/m/n/10 rdkit.Chem.rdDepictor.
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[]\T1/ptm/m/n/10 Acidic|
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Chapter 4.
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Chapter 5.
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[]\T1/ptm/m/n/10 IPython note-book: [][]$http : / / nbviewer . ipython . org /
gist / greglandrum / 8351725$[][] [][]$https : / / gist . github . com / gregla
ndrum /
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Chapter 6.
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3[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C[C[]@[][]@[]][]4[](O)c5ccc(Cl)cc5N
[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]34[])C([]=[]O)N[C[]\T1/pcr/b/n/9 @H
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pcr/m/n/9 ](C([]=[]O)N1CCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N(
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4N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]N2C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T
1/pcr/m/n/9 ][]2[]CCCNN2C([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)N
(C)C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCNN2C([]=[]O)[C[]@[][]\
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9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCNC
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[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/
pcr/m/n/9 ](CCCCN)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)N[C[
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@H[]\T1/pcr/m/n/9 ](CCCNC([]=[]N)N)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pc
r/m/n/9 ](CCCNC([]=[]N)N)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C
c2cnc[nH][]2[])C([]=[]O)O)C(C)C)NC([]=[]O)CNC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/
pcr/m/n/9 ](CC(C)C)NC([]=[]O)CNC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C
O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)NC([]=[]O)[C[]\T1/pcr/b/n/
9 @H[]\T1/pcr/m/n/9 ](CO)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)NC1
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[101]
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[102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112]
Chapter 7.
(./RDKit.ind) [113] (./RDKit.aux)
LaTeX Warning: There were undefined references.
)
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/usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb></usr/share/te
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dist/fonts/type1/urw/helvetic/uhvb8a.pfb></usr/share/texlive/texmf-dist/fonts/t
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Output written on RDKit.pdf (119 pages, 1552132 bytes).
Transcript written on RDKit.log.
Latexmk: Index file 'RDKit.idx' was written
Latexmk: Log file says output to 'RDKit.pdf'
Latexmk: All targets (RDKit.pdf) are up-to-date
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/Docs/Book/_build/latex'
pdflatex finished; the PDF files are in _build/latex.
make[2]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/Docs/Book'
make[1]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg'
cp -r rdkit obj-*/
find /<<BUILDDIR>>/rdkit-201603.5+dfsg -name rdchem.so
/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/rdkit/Chem/rdchem.so
#export RDBASE=/<<BUILDDIR>>/rdkit-201603.5+dfsg PYTHONPATH=/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/ LD_LIBRARY_PATH="/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf//lib:"
RDBASE=/<<BUILDDIR>>/rdkit-201603.5+dfsg PYTHONPATH=/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/:/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf//rdkit/Chem/ LD_LIBRARY_PATH="/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf//lib:" dh_auto_test
cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=-j4
make[2]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
Running tests...
/usr/bin/ctest --force-new-ctest-process -j4
Test project /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf
Start 1: testDict
Start 2: testDataStructs
Start 3: testFPB
Start 4: pyBV
1/102 Test #3: testFPB .......................... Passed 0.11 sec
2/102 Test #2: testDataStructs .................. Passed 0.29 sec
3/102 Test #1: testDict ......................... Passed 0.32 sec
Start 5: pyDiscreteValueVect
Start 6: pySparseIntVect
Start 7: pyFPB
4/102 Test #5: pyDiscreteValueVect .............. Passed 1.68 sec
Start 8: testTransforms
5/102 Test #6: pySparseIntVect .................. Passed 1.67 sec
6/102 Test #7: pyFPB ............................ Passed 1.66 sec
7/102 Test #8: testTransforms ................... Passed 0.13 sec
Start 9: testGrid
Start 10: testPyGeometry
Start 11: testMatrices
8/102 Test #11: testMatrices ..................... Passed 0.04 sec
Start 12: testAlignment
9/102 Test #12: testAlignment .................... Passed 0.08 sec
10/102 Test #9: testGrid ......................... Passed 0.66 sec
Start 13: pyAlignment
Start 14: testOptimizer
11/102 Test #14: testOptimizer .................... Passed 0.13 sec
Start 15: testUFFForceField
12/102 Test #10: testPyGeometry ................... Passed 1.48 sec
Start 16: testMMFFForceField
13/102 Test #13: pyAlignment ...................... Passed 1.15 sec
Start 17: pyForceFieldConstraints
14/102 Test #15: testUFFForceField ................ Passed 1.22 sec
Start 18: testDistGeom
15/102 Test #18: testDistGeom ..................... Passed 0.16 sec
Start 19: pyDistGeom
16/102 Test #19: pyDistGeom ....................... Passed 0.92 sec
Start 20: graphmolTest1
17/102 Test #20: graphmolTest1 .................... Passed 0.98 sec
18/102 Test #17: pyForceFieldConstraints .......... Passed 3.28 sec
Start 21: graphmolcpTest
Start 22: graphmolqueryTest
19/102 Test #22: graphmolqueryTest ................ Passed 0.17 sec
20/102 Test #4: pyBV ............................. Passed 7.35 sec
21/102 Test #21: graphmolcpTest ................... Passed 0.26 sec
Start 23: graphmolMolOpsTest
Start 24: graphmoltestCanon
Start 25: graphmoltestChirality
22/102 Test #24: graphmoltestCanon ................ Passed 0.39 sec
Start 26: graphmoltestPickler
23/102 Test #25: graphmoltestChirality ............ Passed 0.70 sec
Start 27: graphmolIterTest
24/102 Test #27: graphmolIterTest ................. Passed 0.34 sec
Start 28: hanoiTest
25/102 Test #26: graphmoltestPickler .............. Passed 2.49 sec
Start 29: graphmolMemTest1
26/102 Test #29: graphmolMemTest1 ................. Passed 0.34 sec
Start 30: resMolSupplierTest
27/102 Test #30: resMolSupplierTest ............... Passed 7.16 sec
Start 31: testDepictor
28/102 Test #23: graphmolMolOpsTest ............... Passed 11.84 sec
Start 32: pyDepictor
29/102 Test #31: testDepictor ..................... Passed 2.60 sec
Start 33: smiTest1
30/102 Test #32: pyDepictor ....................... Passed 2.57 sec
Start 34: smaTest1
31/102 Test #33: smiTest1 ......................... Passed 1.91 sec
Start 35: fileParsersTest1
32/102 Test #34: smaTest1 ......................... Passed 11.89 sec
Start 36: testMolSupplier
33/102 Test #36: testMolSupplier .................. Passed 1.48 sec
Start 37: testMolWriter
34/102 Test #37: testMolWriter .................... Passed 2.38 sec
Start 38: testTplParser
35/102 Test #38: testTplParser .................... Passed 0.33 sec
Start 39: testMol2ToMol
36/102 Test #39: testMol2ToMol .................... Passed 0.36 sec
Start 40: testSequence
37/102 Test #40: testSequence ..................... Passed 0.36 sec
Start 41: testSubstructMatch
38/102 Test #41: testSubstructMatch ............... Passed 4.85 sec
Start 42: testReaction
39/102 Test #42: testReaction ..................... Passed 1.12 sec
Start 43: testReactionFingerprints
40/102 Test #43: testReactionFingerprints ......... Passed 0.31 sec
Start 44: pyChemReactions
41/102 Test #44: pyChemReactions .................. Passed 1.51 sec
Start 45: testChemTransforms
42/102 Test #45: testChemTransforms ............... Passed 0.76 sec
Start 46: testSubgraphs1
43/102 Test #46: testSubgraphs1 ................... Passed 2.77 sec
Start 47: testSubgraphs2
44/102 Test #47: testSubgraphs2 ................... Passed 0.36 sec
Start 48: filterCatalogTest
45/102 Test #48: filterCatalogTest ................ Passed 1.58 sec
Start 49: pyFilterCatalog
46/102 Test #49: pyFilterCatalog .................. Passed 6.74 sec
Start 50: testFragCatalog
47/102 Test #50: testFragCatalog .................. Passed 8.04 sec
Start 51: pyFragCatalog
48/102 Test #51: pyFragCatalog .................... Passed 1.91 sec
Start 52: testDescriptors
49/102 Test #52: testDescriptors .................. Passed 47.29 sec
Start 53: pyMolDescriptors
50/102 Test #53: pyMolDescriptors ................. Passed 1.92 sec
Start 54: testFingerprints
51/102 Test #35: fileParsersTest1 ................. Passed 126.23 sec
Start 55: testPartialCharges
52/102 Test #55: testPartialCharges ............... Passed 0.31 sec
Start 56: pyPartialCharges
53/102 Test #56: pyPartialCharges ................. Passed 4.29 sec
Start 57: testMolTransforms
54/102 Test #57: testMolTransforms ................ Passed 0.35 sec
Start 58: pyMolTransforms
55/102 Test #58: pyMolTransforms .................. Passed 2.22 sec
Start 59: testMMFFForceFieldHelpers
56/102 Test #54: testFingerprints ................. Passed 93.36 sec
Start 60: testUFFForceFieldHelpers
57/102 Test #16: testMMFFForceField ............... Passed 248.15 sec
Start 61: testCrystalForceField
58/102 Test #61: testCrystalForceField ............ Passed 1.28 sec
Start 62: pyForceFieldHelpers
59/102 Test #62: pyForceFieldHelpers .............. Passed 3.23 sec
Start 63: testDistGeomHelpers
60/102 Test #28: hanoiTest ........................ Passed 430.69 sec
Start 64: pyDistGeom
61/102 Test #60: testUFFForceFieldHelpers ......... Passed 255.91 sec
Start 65: testMolAlign
62/102 Test #64: pyDistGeom ....................... Passed 62.58 sec
Start 66: pyMolAlign
63/102 Test #59: testMMFFForceFieldHelpers ........ Passed 376.30 sec
Start 67: testFeatures
64/102 Test #67: testFeatures ..................... Passed 0.27 sec
Start 68: pyChemicalFeatures
65/102 Test #68: pyChemicalFeatures ............... Passed 1.01 sec
Start 69: testShapeHelpers
66/102 Test #69: testShapeHelpers ................. Passed 0.80 sec
Start 70: pyShapeHelpers
67/102 Test #70: pyShapeHelpers ................... Passed 1.81 sec
Start 71: testMolCatalog
68/102 Test #71: testMolCatalog ................... Passed 0.26 sec
Start 72: pyMolCatalog
69/102 Test #72: pyMolCatalog ..................... Passed 1.01 sec
Start 73: moldraw2DTest1
70/102 Test #73: moldraw2DTest1 ................... Passed 21.52 sec
Start 74: pyMolDraw2D
71/102 Test #74: pyMolDraw2D ...................... Passed 2.23 sec
Start 75: testFMCS
72/102 Test #75: testFMCS ......................... Passed 10.24 sec
Start 76: pyFMCS
73/102 Test #76: pyFMCS ........................... Passed 9.05 sec
Start 77: FMCStest
74/102 Test #77: FMCStest ......................... Passed 0.29 sec
Start 78: testMolHash
75/102 Test #78: testMolHash ...................... Passed 1.53 sec
Start 79: pyMolHash
76/102 Test #79: pyMolHash ........................ Passed 1.42 sec
Start 80: testMMPA
77/102 Test #80: testMMPA ......................... Passed 2.24 sec
Start 81: pyMMPA
78/102 Test #81: pyMMPA ........................... Passed 7.91 sec
Start 82: testReducedGraphs
79/102 Test #82: testReducedGraphs ................ Passed 0.97 sec
Start 83: pyReducedGraphs
80/102 Test #83: pyReducedGraphs .................. Passed 1.83 sec
Start 84: testSLNParse
81/102 Test #84: testSLNParse ..................... Passed 1.01 sec
Start 85: pySLNParse
82/102 Test #85: pySLNParse ....................... Passed 2.24 sec
Start 86: pyGraphMolWrap
83/102 Test #66: pyMolAlign ....................... Passed 168.27 sec
Start 87: pyTestConformerWrap
84/102 Test #87: pyTestConformerWrap .............. Passed 2.12 sec
Start 88: pyTestThreads
85/102 Test #88: pyTestThreads .................... Passed 7.74 sec
Start 89: testQuery
86/102 Test #89: testQuery ........................ Passed 0.46 sec
Start 90: testMatCalc
87/102 Test #90: testMatCalc ...................... Passed 0.19 sec
Start 91: pyMatCalc
88/102 Test #91: pyMatCalc ........................ Passed 7.15 sec
Start 92: pySimDivPickers
89/102 Test #86: pyGraphMolWrap ................... Passed 117.28 sec
Start 93: pyRanker
90/102 Test #93: pyRanker ......................... Passed 2.23 sec
Start 94: testChemicalFeatures
91/102 Test #94: testChemicalFeatures ............. Passed 0.26 sec
Start 95: pyFeatures
92/102 Test #92: pySimDivPickers .................. Passed 34.44 sec
Start 96: pythonTestDbCLI
93/102 Test #95: pyFeatures ....................... Passed 1.34 sec
Start 97: pythonTestDirML
94/102 Test #97: pythonTestDirML .................. Passed 47.62 sec
Start 98: pythonTestDirDataStructs
95/102 Test #98: pythonTestDirDataStructs ......... Passed 9.14 sec
Start 99: pythonTestDirDbase
96/102 Test #99: pythonTestDirDbase ............... Passed 6.82 sec
Start 100: pythonTestDirSimDivFilters
97/102 Test #100: pythonTestDirSimDivFilters ....... Passed 1.51 sec
Start 101: pythonTestDirVLib
98/102 Test #101: pythonTestDirVLib ................ Passed 13.14 sec
Start 102: pythonTestDirChem
99/102 Test #63: testDistGeomHelpers .............. Passed 579.43 sec
100/102 Test #96: pythonTestDbCLI .................. Passed 145.78 sec
101/102 Test #102: pythonTestDirChem ................***Failed 392.50 sec
....
----------------------------------------------------------------------
Ran 4 tests in 0.395s
OK
......
----------------------------------------------------------------------
Ran 6 tests in 0.387s
OK
....[10:00:05]
****
Pre-condition Violation
valence not defined for atoms not associated with molecules
Violation occurred on line 279 in file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Atom.cpp
Failed Expression: dp_mol
****
.
----------------------------------------------------------------------
Ran 5 tests in 0.092s
OK
....
----------------------------------------------------------------------
Ran 4 tests in 0.096s
OK
..
----------------------------------------------------------------------
Ran 2 tests in 0.090s
OK
......................
----------------------------------------------------------------------
Ran 22 tests in 0.327s
OK
.......................
----------------------------------------------------------------------
Ran 23 tests in 1.377s
OK
..
----------------------------------------------------------------------
Ran 2 tests in 1.986s
OK
testing first 200 mols from NCI:
testing a problem with the acceptor definition: ..........................................
----------------------------------------------------------------------
Ran 42 tests in 1.574s
OK
....
----------------------------------------------------------------------
Ran 4 tests in 0.190s
OK
.
----------------------------------------------------------------------
Ran 1 test in 0.096s
OK
first set of test cases: ......
----------------------------------------------------------------------
Ran 6 tests in 0.345s
OK
..[10:00:31] SMILES Parse Error: syntax error for input: 'fail'
[10:00:31] ERROR: Smiles parse error on line 2
[10:00:31] ERROR: Cannot create molecule from : 'fail'
.
----------------------------------------------------------------------
Ran 3 tests in 0.526s
OK
..
----------------------------------------------------------------------
Ran 2 tests in 0.928s
OK
..[10:00:34] WARNING: More than one matching pattern found - picking one
[10:00:34] WARNING: More than one matching pattern found - picking one
.[10:00:34] WARNING: More than one matching pattern found - picking one
..
----------------------------------------------------------------------
Ran 5 tests in 0.947s
OK
........
----------------------------------------------------------------------
Ran 8 tests in 1.142s
OK
..................
----------------------------------------------------------------------
Ran 18 tests in 0.602s
OK
.............
----------------------------------------------------------------------
Ran 13 tests in 15.548s
OK
....
----------------------------------------------------------------------
Ran 4 tests in 38.290s
OK
[10:01:41] WARNING: More than one matching pattern found - picking one
[10:01:41] WARNING: More than one matching pattern found - picking one
[10:01:44] SMARTS Parse Error: syntax error for input: '[Cl,fail]'
....
----------------------------------------------------------------------
Ran 4 tests in 13.949s
OK
......
----------------------------------------------------------------------
Ran 6 tests in 3.472s
OK
Traceback (most recent call last):
File "PandasTools.py", line 132, in <module>
from pandas.core import format as fmt # older versions
ImportError: cannot import name format
Traceback (most recent call last):
File "UnitTestPandasTools.py", line 8, in <module>
from rdkit.Chem import PandasTools
File "/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/rdkit/Chem/PandasTools.py", line 132, in <module>
from pandas.core import format as fmt # older versions
ImportError: cannot import name format
...
----------------------------------------------------------------------
Ran 3 tests in 6.078s
OK
..
----------------------------------------------------------------------
Ran 2 tests in 0.900s
OK
.....
----------------------------------------------------------------------
Ran 5 tests in 0.123s
OK
.
----------------------------------------------------------------------
Ran 1 test in 0.112s
OK
..
----------------------------------------------------------------------
Ran 2 tests in 0.134s
OK
.
----------------------------------------------------------------------
Ran 1 test in 0.849s
OK
........
----------------------------------------------------------------------
Ran 8 tests in 0.011s
OK
.
----------------------------------------------------------------------
Ran 1 test in 0.005s
OK
..
----------------------------------------------------------------------
Ran 2 tests in 0.022s
OK
......
----------------------------------------------------------------------
Ran 6 tests in 0.179s
OK
...
----------------------------------------------------------------------
Ran 3 tests in 0.129s
OK
...
----------------------------------------------------------------------
Ran 3 tests in 42.233s
OK
..........
----------------------------------------------------------------------
Ran 10 tests in 0.800s
OK
.....
----------------------------------------------------------------------
Ran 5 tests in 0.003s
OK
.....
----------------------------------------------------------------------
Ran 5 tests in 0.676s
OK
.....
----------------------------------------------------------------------
Ran 5 tests in 59.709s
OK
mol_197
218.80,35.75,110.33,11.58,109.66,11.09,90.35,2.95,0.00
mol_223
259.19,6.27,134.13,1.12,134.06,1.12,85.74,0.61,0.00
mol_269
204.51,7.89,103.89,1.20,102.66,1.20,88.07,1.21,6.00
...[10:04:26]
****
Pre-condition Violation
molecule has no conformers
Violation occurred on line 37 in file /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
Failed Expression: dp_mol->getNumConformers()
****
.
----------------------------------------------------------------------
Ran 4 tests in 0.303s
OK
.
----------------------------------------------------------------------
Ran 1 test in 105.437s
OK
generate all possible
Compute centroids: 1467
remove points: 1467
[10:04:47] INFO: Generating triangle matches
[10:04:48] INFO: Got 1162 possible alignments in 0.3 seconds
[10:04:48] INFO: Doing direction pruning
[10:04:48] INFO: 94 possible alignments remain. (0.6 seconds required)
[10:04:48] INFO: Shape-based Pruning
[10:04:54] INFO: Generating triangle matches
[10:04:55] INFO: Got 1771 possible alignments in 0.3 seconds
[10:04:55] INFO: Doing direction pruning
[10:04:55] INFO: 214 possible alignments remain. (0.8 seconds required)
[10:04:55] INFO: Shape-based Pruning
[10:05:00] INFO: processed 100 of 214. 139 alignments remain
[10:05:05] INFO: processed 200 of 214. 52 alignments remain
[10:05:06] INFO: Generating triangle matches
[10:05:06] INFO: Got 754 possible alignments in 0.2 seconds
[10:05:06] INFO: Doing direction pruning
[10:05:06] INFO: 86 possible alignments remain. (0.4 seconds required)
[10:05:06] INFO: Shape-based Pruning
.
----------------------------------------------------------------------
Ran 1 test in 0.790s
OK
..[10:06:15] SMILES Parse Error: syntax error for input: 'fail'
[10:06:15] ERROR: Smiles parse error on line 2
[10:06:15] ERROR: Cannot create molecule from : 'fail'
[10:06:15] SMILES Parse Error: syntax error for input: 'fail'
[10:06:15] ERROR: Smiles parse error on line 2
[10:06:15] ERROR: Cannot create molecule from : 'fail'
.
----------------------------------------------------------------------
Ran 3 tests in 0.102s
OK
..
----------------------------------------------------------------------
Ran 2 tests in 3.393s
OK
.............
----------------------------------------------------------------------
Ran 13 tests in 1.538s
OK
[10:06:22] INFO: Skipping agg test
[10:06:22] INFO: Skipping cairo test
[10:06:26] non-ring atom 1 marked aromatic
[10:06:26] non-ring atom 1 marked aromatic
[10:06:26] non-ring atom 1 marked aromatic
[10:06:27] non-ring atom 1 marked aromatic
[10:06:27] non-ring atom 1 marked aromatic
[10:06:27] non-ring atom 1 marked aromatic
[10:06:27] non-ring atom 1 marked aromatic
[10:06:27] non-ring atom 1 marked aromatic
[10:06:27] non-ring atom 1 marked aromatic
[10:06:27] non-ring atom 1 marked aromatic
[10:06:27] non-ring atom 1 marked aromatic
[10:06:27] non-ring atom 1 marked aromatic
[10:06:29] non-ring atom 1 marked aromatic
[10:06:29] non-ring atom 1 marked aromatic
[10:06:29] non-ring atom 1 marked aromatic
[10:06:29] non-ring atom 1 marked aromatic
[10:06:29] non-ring atom 1 marked aromatic
[10:06:29] non-ring atom 1 marked aromatic
[10:06:29] non-ring atom 1 marked aromatic
[10:06:29] non-ring atom 1 marked aromatic
[10:06:29] non-ring atom 1 marked aromatic
[10:06:29] non-ring atom 1 marked aromatic
[10:06:29] non-ring atom 1 marked aromatic
[10:06:29] non-ring atom 1 marked aromatic
[10:06:30] non-ring atom 1 marked aromatic
[10:06:30] non-ring atom 1 marked aromatic
[10:06:30] non-ring atom 1 marked aromatic
[10:06:30] non-ring atom 1 marked aromatic
[10:06:30] non-ring atom 1 marked aromatic
[10:06:30] non-ring atom 1 marked aromatic
[10:06:30] non-ring atom 1 marked aromatic
[10:06:30] non-ring atom 1 marked aromatic
[10:06:30] non-ring atom 1 marked aromatic
[10:06:30] non-ring atom 1 marked aromatic
[10:06:30] non-ring atom 1 marked aromatic
[10:06:30] non-ring atom 1 marked aromatic
.[10:06:31] non-ring atom 1 marked aromatic
[10:06:31] non-ring atom 1 marked aromatic
[10:06:31] non-ring atom 1 marked aromatic
[10:06:31] non-ring atom 1 marked aromatic
[10:06:31] non-ring atom 1 marked aromatic
[10:06:31] non-ring atom 1 marked aromatic
[10:06:31] non-ring atom 1 marked aromatic
[10:06:31] non-ring atom 1 marked aromatic
[10:06:31] non-ring atom 1 marked aromatic
[10:06:31] non-ring atom 1 marked aromatic
[10:06:31] non-ring atom 1 marked aromatic
.
----------------------------------------------------------------------
Ran 2 tests in 0.809s
OK
[10:06:33] reaction has no reactants
[10:06:33] reaction has no products
[10:06:33] initialization failed
[10:06:33] reaction has no reactants
[10:06:33] reaction has no products
102/102 Test #65: testMolAlign ..................... Passed 825.02 sec
99% tests passed, 1 tests failed out of 102
Total Test time (real) = 1292.66 sec
The following tests FAILED:
102 - pythonTestDirChem (Failed)
Errors while running CTest
Makefile:143: recipe for target 'test' failed
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debian/rules:96: recipe for target 'override_dh_auto_test' failed
make[1]: [override_dh_auto_test] Error 2 (ignored)
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fakeroot debian/rules binary-arch
dh binary-arch --with python2 --buildsystem=cmake --parallel
dh_testroot -a -O--buildsystem=cmake -O--parallel
dh_prep -a -O--buildsystem=cmake -O--parallel
dh_auto_install -a -O--buildsystem=cmake -O--parallel
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make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/DataStructs.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/Numerics/CMakeFiles/testMatrices.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 2%] Built target testDict
[ 3%] Built target RDBoost
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Catalogs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Catalogs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/EigenSolvers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/EigenSolvers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color=
[ 5%] Built target DataStructs
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Query /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Query /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color=
[ 6%] Built target testMatrices
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataManip/MetricMatrixCalc /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataManip/MetricMatrixCalc /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/Catalogs/CMakeFiles/Catalogs.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/Query/CMakeFiles/testQuery.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 8%] Built target EigenSolvers
[ 8%] Built target Catalogs
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/SimDivPickers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/SimDivPickers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataManip/MetricMatrixCalc/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataManip/MetricMatrixCalc/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
[ 9%] Built target testQuery
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend
[ 9%] Built target testMatCalc
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/Cluster/Murtagh /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/Cluster/Murtagh /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/InfoTheory /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 9%] Built target InfoTheory
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend
[ 9%] Built target rdMetricMatrixCalc
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ChemicalFeatures /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ChemicalFeatures /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/RDBoost/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/RDBoost/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color=
[ 10%] Built target SimDivPickers
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
[ 11%] Built target Clustering
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testDataStructs.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testFPB.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 13%] Built target rdBase
[ 13%] Built target testChemicalFeatures
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DataStructs/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
[ 14%] Built target testDataStructs
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
[ 15%] Built target testFPB
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/SimDivPickers/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/InfoTheory/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/InfoTheory/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/RDGeometryLib.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build
[ 17%] Built target cDataStructs
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 18%] Built target RDGeometryLib
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ML/Data /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/Data /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 19%] Built target rdSimDivPickers
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
[ 20%] Built target rdInfoTheory
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Geometry/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/testTransforms.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/ML/Data/CMakeFiles/cQuantize.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build
[ 21%] Built target testTransforms
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/testGrid.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Alignment /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
[ 22%] Built target cQuantize
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Optimizer /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
[ 22%] Built target testGrid
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
[ 23%] Built target rdGeometry
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color=
[ 23%] Built target Alignment
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Alignment /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Alignment/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
[ 24%] Built target Optimizer
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/Numerics/Optimizer /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/GraphMol.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build
[ 24%] Built target testAlignment
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend
[ 24%] Built target rdAlignment
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color=
[ 30%] Built target GraphMol
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Substruct /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
[ 30%] Built target testOptimizer
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolTransforms /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/ForceField/CMakeFiles/ForceField.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 30%] Built target SubstructMatch
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
[ 30%] Built target MolTransforms
[ 32%] Built target SmilesParse
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
[ 37%] Built target ForceField
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolTransforms/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 38%] Built target Depictor
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend
[ 39%] Built target PartialCharges
[ 39%] Built target Subgraphs
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
[ 39%] Built target rdMolTransforms
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ReducedGraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build'.
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 40%] Built target MolCatalog
[ 41%] Built target MolChemicalFeatures
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
[ 41%] Built target ReducedGraphs
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
[ 42%] Built target ShapeHelpers
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ChemicalFeatures/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ChemicalFeatures/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
[ 43%] Built target SLNParse
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
[ 44%] Built target rdChemicalFeatures
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
[ 44%] Built target rdqueries
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
[ 45%] Built target ForceFieldHelpers
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 45%] Built target MolAlign
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
[ 45%] Built target graphmolqueryTest
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
[ 46%] Built target graphmolcpTest
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
[ 51%] Built target FileParsers
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemTransforms /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 51%] Built target graphmoltestCanon
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
[ 52%] Built target graphmolIterTest
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 52%] Built target graphmolMemTest1
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SmilesParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build
[ 53%] Built target ChemTransforms
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 54%] Built target smiTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
[ 54%] Built target smaTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
[ 54%] Built target rdDepictor
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build
[ 54%] Built target testSequence
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
[ 54%] Built target fileParsersTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
[ 55%] Built target testMolSupplier
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Substruct /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
[ 56%] Built target testMolWriter
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 56%] Built target testTplParser
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend
make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 56%] Built target testMol2ToMol
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemTransforms /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
[ 57%] Built target testSubstructMatch
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 57%] Built target testChemTransforms
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Subgraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
[ 58%] Built target testSubgraphs1
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build
[ 59%] Built target Descriptors
[ 60%] Built target Fingerprints
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 60%] Built target testSubgraphs2
make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Descriptors/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
[ 61%] Built target FilterCatalog
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Fingerprints /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 62%] Built target testDescriptors
[ 63%] Built target rdMolDescriptors
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
[ 65%] Built target FragCatalog
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolTransforms /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/PartialCharges/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
[ 66%] Built target testFingerprints
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 66%] Built target testPartialCharges
[ 66%] Built target rdPartialCharges
[ 66%] Built target testMolTransforms
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
[ 67%] Built target rdForceFieldHelpers
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 67%] Built target testFeatures
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ShapeHelpers/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
[ 68%] Built target rdMolAlign
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
[ 69%] Built target rdMolChemicalFeatures
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
[ 69%] Built target testShapeHelpers
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolCatalog/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 70%] Built target testMolCatalog
[ 70%] Built target rdMolCatalog
[ 71%] Built target rdShapeHelpers
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolHash /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
[ 72%] Built target MolDraw2D
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MMPA /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ReducedGraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 73%] Built target MolHash
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
[ 74%] Built target FMCS
[ 75%] Built target MMPA
[ 75%] Built target testReducedGraphs
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ReducedGraphs/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/SLNParse/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 76%] Built target testSLNParse
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
[ 76%] Built target rdSLNParse
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
[ 77%] Built target rdReducedGraphs
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/UFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/UFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color=
[ 78%] Built target rdmolops
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/DistGeom/CMakeFiles/DistGeometry.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 78%] Built target testUFFForceField
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
[ 81%] Built target DistGeometry
[ 81%] Built target rdmolfiles
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
[ 83%] Built target rdchem
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build'.
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 83%] Built target graphmolTest1
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
[ 83%] Built target rdForceField
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
[ 85%] Built target graphmoltestChirality
[ 85%] Built target graphmolMolOpsTest
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/Depictor /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/hanoiTest.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 85%] Built target graphmoltestPickler
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
[ 86%] Built target resMolSupplierTest
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
[ 86%] Built target testDepictor
[ 87%] Built target hanoiTest
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FilterCatalog/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 87%] Built target filterCatalogTest
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
[ 90%] Built target rdfiltercatalog
[ 90%] Built target ChemReactions
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
[ 90%] Built target testFragCatalog
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolDraw2D /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FragCatalog/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 91%] Built target moldraw2DTest1
[ 91%] Built target rdMolDraw2D
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
[ 91%] Built target testFMCS
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/FMCS/Test /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Test /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolHash /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
[ 92%] Built target rdfragcatalog
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolHash/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 92%] Built target FMCStest
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
[ 92%] Built target testMolHash
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MMPA /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
[ 92%] Built target rdFMCS
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MMPA/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
[ 93%] Built target rdMolHash
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/DistGeom/CMakeFiles/testDistGeom.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 94%] Built target testMMPA
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
[ 94%] Built target rdMMPA
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/DistGeom/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
[ 94%] Built target testDistGeom
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
[ 94%] Built target DistGeomHelpers
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ChemReactions/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 94%] Built target testReaction
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
[ 95%] Built target DistGeom
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/UFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/UFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
[ 96%] Built target testReactionFingerprints
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/CrystalFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
[ 96%] Built target rdChemReactions
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 96%] Built target testMMFFForceFieldHelpers
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
[ 97%] Built target testUFFForceFieldHelpers
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/DistGeomHelpers/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/Wrap /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/GraphMol/MolAlign /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 97%] Built target testCrystalForceField
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rdkit-201603.5+dfsg /<<BUILDDIR>>/rdkit-201603.5+dfsg/Code/ForceField/MMFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/MMFF /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
[ 98%] Built target testDistGeomHelpers
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
[ 98%] Built target testMolAlign
[ 99%] Built target rdDistGeom
[100%] Built target testMMFFForceField
make[2]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/rdkit-targets.cmake
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/rdkit-targets-none.cmake
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/rdkit-config.cmake
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/rdkit-config-version.cmake
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Avalon
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Avalon/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AllChem.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/Pairs.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/Sheridan.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/Torsions.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/Utils.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/BRICS.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/BuildFragmentCatalog.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemUtils
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemUtils/AlignDepict.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemUtils/BulkTester.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemUtils/SDFToCSV.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemUtils/TemplateExpand.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemUtils/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemicalFeatures.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemicalForceFields.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Crippen.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/DSViewer.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Descriptors.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/FreeSans.ttf
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/IPythonConsole.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/MolDrawing.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/SimilarityMaps.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/aggCanvas.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/cairoCanvas.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/canvasbase.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/mplCanvas.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/qtCanvas.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/spingCanvas.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState/AtomTypes.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState/EState.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState/EState_VSA.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState/Fingerprinter.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FastSDMolSupplier.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FeatFinderCLI.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FeatMaps
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FeatMaps/FeatMapParser.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FeatMaps/FeatMapPoint.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FeatMaps/FeatMapUtils.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FeatMaps/FeatMaps.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FeatMaps/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Features
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Features/FeatDirUtilsRD.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Features/ShowFeats.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Features/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FilterCatalog.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/ClusterMols.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/DbFpSupplier.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/FingerprintMols.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/MolSimilarity.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/SimilarityScreener.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fraggle
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fraggle/FraggleSim.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fraggle/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FragmentCatalog.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FragmentMatcher.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fragments.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FunctionalGroups.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/GraphDescriptors.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Graphs.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Lipinski.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MACCSkeys.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MCS.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolCatalog.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb/FingerprintUtils.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb/Loader.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb/Loader_orig.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb/Loader_sa.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolKey
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolKey/InchiInfo.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolKey/MolKey.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolKey/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolSurf.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/PandasTools.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/PeriodicTable.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm2D
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm2D/Generate.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm2D/LazyGenerator.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm2D/Matcher.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm2D/SigFactory.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm2D/Utils.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm2D/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/EmbedLib.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/ExcludedVolume.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/Pharmacophore.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/Pharmacophore.pyc
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/ExcludedVolume.pyc
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/EmbedLib.pyc
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/PropertyMol.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/PyMol.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Randomize.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Recap.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ReducedGraphs.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/SATIS.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/SaltRemover.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Scaffolds
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Scaffolds/MurckoScaffold.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Scaffolds/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Scaffolds/test_MurckoScaffold.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ShowMols.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/SimpleEnum
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/SimpleEnum/Enumerator.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/SimpleEnum/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape/BuilderUtils.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape/SubshapeAligner.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape/SubshapeBuilder.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape/SubshapeObjects.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape/testCombined.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Suppliers
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Suppliers/DbMolSupplier.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Suppliers/MolSupplier.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Suppliers/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/TemplateAlign.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/TorsionFingerprints.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/fmcs
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/fmcs/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/fmcs/fmcs
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/fmcs/fmcs.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/inchi.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataManip
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataManip/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/BitEnsemble.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/BitEnsembleDb.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/BitUtils.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/HierarchyVis.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/LazySignature.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/TopNContainer.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/VectCollection.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbConnection.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbInfo.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbModule.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbReport.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbResultSet.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbUtils.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/StorageUtils.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ForceField
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ForceField/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Geometry
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Geometry/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/AnalyzeComposite.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/BuildComposite.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Butina.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/ClusterUtils.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/ClusterVis.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Clusters.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Murtagh.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Resemblance.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Standardize.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/murtagh_test.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Composite
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Composite/AdjustComposite.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Composite/BayesComposite.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Composite/Composite.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Composite/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/CompositeRun.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/DataUtils.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/FindQuantBounds.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/MLData.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/Quantize.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/SplitData.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/Stats.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/Transforms.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/BuildQuantTree.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/BuildSigTree.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/CrossValidate.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/DecTree.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/Forest.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/ID3.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/PruneTree.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/QuantTree.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/SigTree.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/Tree.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/TreeUtils.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/TreeVis.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/randomtest.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/DecTree.pyc
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/BuildSigTree.pyc
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors/CompoundDescriptors.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors/Descriptors.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors/MoleculeDescriptors.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors/Parser.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors/Parser.pyc
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/EnrichPlot.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/GrowComposite.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/BitClusterer.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/BitRank.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/entropy.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/testBitRanker.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/testCorrMatGen.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/KNN
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/KNN/CrossValidate.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/KNN/DistFunctions.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/KNN/KNNClassificationModel.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/KNN/KNNModel.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/KNN/KNNRegressionModel.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/KNN/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/MLUtils
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/MLUtils/VoteImg.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/MLUtils/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/MatOps.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/ModelPackage
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/ModelPackage/PackageUtils.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/ModelPackage/Packager.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/ModelPackage/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/NaiveBayes
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/NaiveBayes/ClassificationModel.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/NaiveBayes/CrossValidate.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/NaiveBayes/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/ActFuncs.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/CrossValidate.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/NetNode.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/Network.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/Trainers.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/architecture.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/SLT
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/SLT/Risk.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/SLT/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Scoring
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Scoring/Scoring.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Scoring/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/ScreenComposite.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/files.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Numerics
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Numerics/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/RDConfig.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/RDLogger.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/RDRandom.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/SimilarityPickers.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/TestRunner.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Filter.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Node.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/DbMolSupply.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SDSupply.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmartsRemover.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmilesOutput.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmilesSupply.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/demo.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Output.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Supply.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Transform.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/_py2_pickle.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/epydoc.config
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/six.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfdoc.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfgen.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfgeom.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfmetrics.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfutils.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pidPDF.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pidPIL.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-10.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-10.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-12.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-12.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-14.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-14.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-18.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-18.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-24.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-24.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-8.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-8.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-8.pil.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/metrics.dat
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/removemedium.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-10.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-10.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-12.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-12.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-14.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-14.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-18.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-18.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-24.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-24.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-8.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-8.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-10.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-10.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-12.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-12.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-14.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-14.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-18.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-18.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-24.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-24.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-8.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-8.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pbm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pil
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/fontinfo.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/latin1MetricsCache.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/pidPS.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/psmetrics.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart/Fontmapping.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart/pidPyart.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt/pidQt.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt/pidQt4.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/README
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/ReportLab
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/ReportLab/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/ReportLab/pidReportLab.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/SVG
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/SVG/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/SVG/pidSVG.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/TK
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/TK/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/TK/pidTK.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/WX
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/WX/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/WX/pidWX.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/WX/pidWxDc.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/colors.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples/formatted-strings.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples/tkCanvas-with-scrollbars.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/pagesizes.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/patches
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/patches/Imaging-1.1-fixplugin-path
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/patches/Imaging-1.1.1.diff
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/pid.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/stringformat.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/pidtest.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/pstests.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/testallps.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/util
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/util/HTMLPiddler.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/util/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/utils.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/12h.gif
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/__init__.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/cactvs.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/chemdraw.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/chemdraw_qax.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/chemutils.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/comhack.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/fileutils.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/listutils.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/retest.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/spiral.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/test1.gif
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.DataStructs.BitEnsembleDb-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.DataStructs.BitUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.DataStructs.HierarchyVis-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.DataStructs.LazySignature-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.DataStructs.TopNContainer-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.DataStructs.VectCollection-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.DataStructs-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Dbase.DbConnection-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Dbase.DbInfo-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Dbase.DbModule-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Dbase.DbReport-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Dbase.DbResultSet-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Dbase.DbUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Dbase.StorageUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Dbase-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.DistanceGeometry-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ForceField-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Geometry-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.AnalyzeComposite-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.BuildComposite-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Cluster.Butina-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Cluster.ClusterUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Cluster.ClusterVis-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Cluster.Clusters-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Cluster.Murtagh-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Cluster.Resemblance-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Cluster.Standardize-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Cluster-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Composite.AdjustComposite-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Composite.BayesComposite-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Composite.Composite-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Composite-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.CompositeRun-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Data.DataUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Data.FindQuantBounds-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Data.MLData-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Data.Quantize-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Data.SplitData-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Data.Stats-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Data.Transforms-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Data-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.DecTree.BuildQuantTree-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.DecTree.BuildSigTree-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.DecTree.CrossValidate-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.DecTree.DecTree-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.DecTree.Forest-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.DecTree.ID3-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.DecTree.PruneTree-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.DecTree.QuantTree-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.DecTree.SigTree-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.DecTree.Tree-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.DecTree.TreeUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.DecTree.TreeVis-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.DecTree-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Descriptors.CompoundDescriptors-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Descriptors.Descriptors-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Descriptors.MoleculeDescriptors-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Descriptors.Parser-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Descriptors-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.EnrichPlot-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.GrowComposite-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.InfoTheory.BitClusterer-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.InfoTheory.BitRank-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.InfoTheory-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.InfoTheory.entropy-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.KNN.CrossValidate-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.KNN.DistFunctions-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.KNN.KNNClassificationModel-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.KNN.KNNModel-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.KNN.KNNRegressionModel-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.KNN-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.MLUtils.VoteImg-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.MLUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.MatOps-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.ModelPackage.PackageUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.ModelPackage.Packager-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.ModelPackage-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.NaiveBayes.ClassificationModel-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.NaiveBayes.CrossValidate-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.NaiveBayes-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Neural.ActFuncs-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Neural.CrossValidate-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Neural.NetNode-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Neural.Network-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Neural.Trainers-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Neural-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.SLT.Risk-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.SLT-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Scoring.Scoring-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.Scoring-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.ScreenComposite-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.ML.files-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.Numerics-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.SimDivFilters.SimilarityPickers-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.SimDivFilters-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.Filter-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.Node-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.NodeLib.DbMolSupply-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.NodeLib.DbPickleSupplier-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.NodeLib.SDSupply-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.NodeLib.SmartsMolFilter-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.NodeLib.SmartsRemover-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.NodeLib.SmilesDupeFilter-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.NodeLib.SmilesOutput-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.NodeLib.SmilesSupply-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.NodeLib-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.NodeLib.demo-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.Output-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.Supply-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib.Transform-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-rdkit.VLib-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/toc-RDRandom-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Avalon-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.AllChem-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.AtomPairs.Pairs-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.AtomPairs.Sheridan-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.AtomPairs.Torsions-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.AtomPairs.Utils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.AtomPairs-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.BRICS-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.BuildFragmentCatalog-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.ChemUtils.AlignDepict-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.ChemUtils.BulkTester-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.ChemUtils.SDFToCSV-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.ChemUtils.TemplateExpand-module.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.ChemicalForceFields-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Crippen-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.DSViewer-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Descriptors-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.IPythonConsole-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.MolDrawing-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.SimilarityMaps-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.aggCanvas-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.cairoCanvas-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.canvasbase-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.mplCanvas-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.qtCanvas-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.spingCanvas-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.EState.AtomTypes-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.EState.EState-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.EState.EState_VSA-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.EState.Fingerprinter-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.EState-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FastSDMolSupplier-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatFinderCLI-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMapParser-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMapPoint-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMapUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMaps-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Features.FeatDirUtilsRD-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Features.ShowFeats-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Features-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FilterCatalog-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.ClusterMols-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.DbFpSupplier-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.FingerprintMols-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.MolSimilarity-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.SimilarityScreener-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fraggle.FraggleSim-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fraggle-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FragmentCatalog-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FragmentMatcher-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fragments-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FunctionalGroups-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.GraphDescriptors-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Graphs-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Lipinski-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MACCSkeys-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MCS-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolCatalog-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolDb.FingerprintUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolDb.Loader-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolDb.Loader_orig-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolDb.Loader_sa-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolDb-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolKey.InchiInfo-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolKey.MolKey-module.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolSurf-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.PandasTools-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.PeriodicTable-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D.Generate-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D.Gobbi_Pharm2D-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D.LazyGenerator-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D.Matcher-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D.SigFactory-module.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm3D.EmbedLib-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm3D.ExcludedVolume-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm3D.Pharmacophore-module.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.ReducedGraphs-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.SATIS-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.SaltRemover-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Scaffolds.MurckoScaffold-module.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.SimpleEnum.Enumerator-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.SimpleEnum-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.BuilderUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.SubshapeAligner-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.SubshapeBuilder-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.SubshapeObjects-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Suppliers.DbMolSupplier-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Suppliers.MolSupplier-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Suppliers-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.TemplateAlign-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.TorsionFingerprints-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.inchi-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataManip.Metric-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataManip-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.BitEnsemble-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.BitEnsembleDb-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.BitUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.HierarchyVis-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.LazySignature-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.TopNContainer-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.VectCollection-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbConnection-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbInfo-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbModule-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbReport-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbResultSet-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.StorageUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DistanceGeometry-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ForceField-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Geometry-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.AnalyzeComposite-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.BuildComposite-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.Butina-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.ClusterUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.ClusterVis-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.Clusters-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.Murtagh-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.Resemblance-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.Standardize-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Composite.AdjustComposite-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Composite.BayesComposite-module.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.CompositeRun-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Data.DataUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Data.FindQuantBounds-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Data.MLData-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Data.Quantize-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Data.SplitData-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Data.Stats-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Data.Transforms-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Data-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.BuildQuantTree-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.BuildSigTree-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.CrossValidate-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.DecTree-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.Forest-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.ID3-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.PruneTree-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.QuantTree-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.SigTree-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.Tree-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.TreeUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.TreeVis-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors.CompoundDescriptors-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors.Descriptors-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors.MoleculeDescriptors-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors.Parser-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.EnrichPlot-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.GrowComposite-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.InfoTheory.BitClusterer-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.InfoTheory.BitRank-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.InfoTheory-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.InfoTheory.entropy-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.KNN.CrossValidate-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.KNN.DistFunctions-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.KNN.KNNClassificationModel-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.KNN.KNNModel-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.KNN.KNNRegressionModel-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.KNN-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.MLUtils.VoteImg-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.MLUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.MatOps-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.ModelPackage.PackageUtils-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.ModelPackage.Packager-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.ModelPackage-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.NaiveBayes.ClassificationModel-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.NaiveBayes.CrossValidate-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.NaiveBayes-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.ActFuncs-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.CrossValidate-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.NetNode-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.Network-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.Trainers-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.SLT.Risk-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.SLT-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Scoring.Scoring-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Scoring-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.ScreenComposite-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.files-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Numerics-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.SimDivFilters.SimilarityPickers-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.SimDivFilters-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.Filter-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.Node-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.DbMolSupply-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.DbPickleSupplier-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SDSupply-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SmartsMolFilter-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SmartsRemover-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SmilesDupeFilter-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SmilesOutput-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SmilesSupply-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.demo-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.Output-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.Supply-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.Transform-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/RDRandom-module.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/buffer-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.BuildFragmentCatalog.RunDetails-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.ChemUtils.SDFToCSV.TestCase-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.DSViewer.Displayable-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.DSViewer.MolViewer-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.MolDrawing.DrawingOptions-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.MolDrawing.Font-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.MolDrawing.MolDrawing-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.aggCanvas.Canvas-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.cairoCanvas.Canvas-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.canvasbase.CanvasBase-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.mplCanvas.Canvas-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.qtCanvas.Canvas-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.spingCanvas.Canvas-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FastSDMolSupplier.FastSDMolSupplier-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMapParser.FeatMapParseError-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMapParser.FeatMapParser-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMapPoint.FeatMapPoint-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMapUtils.DirMergeMode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMapUtils.MergeMethod-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMapUtils.MergeMetric-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMaps.FeatDirScoreMode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMaps.FeatMap-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMaps.FeatMapParams-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMaps.FeatMapParams.FeatProfile-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMaps.FeatMapScoreMode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FilterCatalog.FilterMatcher-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.DbFpSupplier.DbFpSupplier-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.DbFpSupplier.ForwardDbFpSupplier-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.DbFpSupplier.RandomAccessDbFpSupplier-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.FingerprintMols.FingerprinterDetails-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.SimilarityScreener.SimilarityScreener-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.SimilarityScreener.ThresholdScreener-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.SimilarityScreener.TopNScreener-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FragmentCatalog.BitGainsInfo-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FragmentMatcher.FragmentMatcher-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FunctionalGroups.FGHierarchyNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FunctionalGroups.FuncGroupFileParseError-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MCS.MCSResult-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolDb.FingerprintUtils.LayeredOptions-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolDb.Loader_sa.Compound-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolKey.InchiInfo.InchiInfo-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolKey.InchiInfo.TestInchiInfo-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolKey.MolKey.BadMoleculeException-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolKey.MolKey.MolIdentifierException-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D.LazyGenerator.Generator-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D.Matcher.MatchError-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D.SigFactory.SigFactory-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm3D.ExcludedVolume.ExcludedVolume-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm3D.Pharmacophore.ExplicitPharmacophore-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm3D.Pharmacophore.Pharmacophore-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.PropertyMol.PropertyMol-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.PyMol.MolViewer-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Recap.RecapHierarchyNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.SaltRemover.SaltRemover-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.SubshapeAligner.SubshapeAligner-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.SubshapeAligner.SubshapeAlignment-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.SubshapeAligner.SubshapeDistanceMetric-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.SubshapeBuilder.SubshapeBuilder-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.SubshapeBuilder.SubshapeCombineOperations-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.SubshapeObjects.ShapeWithSkeleton-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.SubshapeObjects.SkeletonPoint-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.SubshapeObjects.SubshapeShape-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Suppliers.DbMolSupplier.DbMolSupplier-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Suppliers.DbMolSupplier.ForwardDbMolSupplier-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Suppliers.DbMolSupplier.RandomAccessDbMolSupplier-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Suppliers.MolSupplier.MolSupplier-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.AtomSmartsNoAromaticity-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.CachingTargetsMatcher-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.CangenNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.Default-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.FragmentedTypedMolecule-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.MCSResult-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.SingleBestAtoms-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.SingleBestAtomsCompleteRingsOnly-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.SingleBestBonds-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.SingleBestBondsCompleteRingsOnly-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.Timer-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.TypedFragment-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.TypedMolecule-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.Uniquer-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.VerboseCachingTargetsMatcher-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.VerboseHeapOps-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs._SingleBest-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs.fmcs.starting_from-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.BitEnsemble.BitEnsemble-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.HierarchyVis.VisOpts-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.LazySignature.LazySig-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.TopNContainer.TopNContainer-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.VectCollection.VectCollection-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbConnection.DbConnect-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbConnection.DbError-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbReport.CDXImageTransformer-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbReport.CactvsImageTransformer-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbReport.RDImageTransformer-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbReport.ReportLabImageTransformer-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbResultSet.DbResultBase-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbResultSet.DbResultSet-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbResultSet.RandomAccessDbResultSet-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.ClusterVis.ClusterRenderer-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.ClusterVis.VisOpts-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.Clusters.Cluster-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Composite.BayesComposite.BayesComposite-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Composite.Composite.Composite-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.CompositeRun.CompositeRun-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Data.MLData.MLDataSet-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Data.MLData.MLQuantDataSet-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.DecTree.DecTreeNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.Forest.Forest-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.QuantTree.QuantTreeNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.SigTree.SigTreeNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.Tree.TreeNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.TreeVis.VisOpts-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors.CompoundDescriptors.CompoundDescriptorCalculator-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors.Descriptors.DescriptorCalculator-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors.MoleculeDescriptors.MolecularDescriptorCalculator-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.InfoTheory.BitClusterer.BitClusterer-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.KNN.KNNClassificationModel.KNNClassificationModel-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.KNN.KNNModel.KNNModel-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.KNN.KNNRegressionModel.KNNRegressionModel-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.ModelPackage.Packager.ClassificationError-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.ModelPackage.Packager.DescriptorCalculationError-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.ModelPackage.Packager.ModelPackage-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.NaiveBayes.ClassificationModel.NaiveBayesClassifier-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.ActFuncs.ActFunc-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.ActFuncs.Sigmoid-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.ActFuncs.TanH-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.NetNode.NetNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.Network.Network-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.Trainers.BackProp-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.Trainers.Trainer-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.files.ReFile-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.SimDivFilters.SimilarityPickers.GenericPicker-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.SimDivFilters.SimilarityPickers.SpreadPicker-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.SimDivFilters.SimilarityPickers.TopNOverallPicker-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.Filter.FilterNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.Node.VLibNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.DbMolSupply.DbMolSupplyNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.DbPickleSupplier.DbPickleSupplyNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.DbPickleSupplier._lazyDataSeq-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SDSupply.SDSupplyNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SmartsMolFilter.SmartsFilter-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SmartsRemover.SmartsRemover-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SmilesDupeFilter.DupeFilter-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SmilesOutput.OutputNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SmilesSupply.SmilesSupplyNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.Output.OutputNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.Supply.SupplyNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.Transform.TransformNode-class.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.ChemUtils.AlignDepict-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.BRICS-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ForceField-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.ModelPackage-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.AtomPairs-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMapUtils-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.BuilderUtils-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.Standardize-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.EnrichPlot-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.GrowComposite-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolKey-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolDb.FingerprintUtils-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMapPoint-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolKey.MolKey-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.AtomPairs.Utils-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.BuildComposite-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.DecTree-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.FingerprintMols-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D.Matcher-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbModule-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.SLT.Risk-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Graphs-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.SimpleEnum.Enumerator-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.fmcs-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.KNN.DistFunctions-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.spingCanvas-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SDSupply-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolDb.Loader-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMapParser-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.EState.EState_VSA-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors.CompoundDescriptors-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fraggle-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.Butina-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatMaps.FeatMaps-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.DbFpSupplier-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.SaltRemover-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Descriptors-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.InfoTheory-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm3D.Pharmacophore-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.InfoTheory.entropy-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.inchi-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Descriptors-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.DbPickleSupplier-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.AnalyzeComposite-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.CrossValidate-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.CompositeRun-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.MolSimilarity-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.aggCanvas-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D.Generate-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.KNN.KNNModel-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.InfoTheory.BitClusterer-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.CrossValidate-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.ChemUtils.SDFToCSV-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.BuildSigTree-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.MLUtils.VoteImg-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.MolDrawing-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolKey.InchiInfo-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.mplCanvas-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.AtomPairs.Sheridan-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.SimilarityMaps-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.demo-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Scaffolds-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/RDRandom-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Suppliers-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Subshape.SubshapeAligner-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolDb.Loader_orig-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm3D-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.ShowMols-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.QuantTree-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.AtomPairs.Pairs-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.BuildFragmentCatalog-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.ChemUtils.BulkTester-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.TorsionFingerprints-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolDb-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MCS-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.Node-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.Murtagh-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.files-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FunctionalGroups-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FeatFinderCLI-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.SATIS-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Geometry-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.MatOps-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.MolDb.Loader_sa-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints.SimilarityScreener-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D.Gobbi_Pharm2D-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Draw.IPythonConsole-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Scaffolds.MurckoScaffold-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Composite.Composite-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Dbase.DbConnection-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Cluster.ClusterUtils-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.KNN.CrossValidate-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.NaiveBayes.ClassificationModel-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Data.DataUtils-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.PandasTools-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm2D.Utils-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.BuildQuantTree-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.DecTree.SigTree-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Neural.Trainers-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.PropertyMol-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.SmartsRemover-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm3D.ExcludedVolume-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.NaiveBayes.CrossValidate-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Suppliers.DbMolSupplier-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Pharm3D.EmbedLib-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.FilterCatalog-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.Composite.BayesComposite-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.VLib.NodeLib.DbMolSupply-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.Chem.Fingerprints-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.DataStructs.HierarchyVis-pysrc.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/docs/rdkit.ML.MLUtils-pysrc.html
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Data/NCI/first_5k.tpsa.csv
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/fps.1000.counts.pkl.gz
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/mols.1000.pkl.gz
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_Correlation.csv
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_Correlation.csv
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/README
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis/ForceField/ForceFieldTerms.new.odt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis/ForceField/UFF Parameters.ods
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/Cartridge.md
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/Cookbook.md
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/GettingStartedInPython.rst
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/Install.md
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/Makefile
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/Overview.md
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/RDKit_Book.rst
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/conf.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/5ht3ligs.sdf
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/AmideBond.rxn
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/MinimalFeatures.fdef
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf.gz
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/bzr.sdf
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/bzr.smi
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/cdk2.sdf
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/chiral.mol
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/input.mol
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/invalid.mol
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/solubility.test.sdf
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/solubility.train.sdf
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/exts
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/exts/extapi.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/exts/extapi.pyc
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_mol1.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_mol2.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_molgrid.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_molgrid_aligned.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/indole1.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_0.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_1.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_10.jpg
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_10.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_11.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_2.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_3.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_4.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_5.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_6.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_7.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_8.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_9.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_charges.png
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/index.rst
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/Overview.rst
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/Cartridge.rst
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/Cookbook.rst
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/Install.rst
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Code
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/Chem
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/Chem/FragmentCatalogs.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.ai
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.jpg
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.ai
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.jpg
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/CodingStandards.md
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Images
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Images/logo.ai
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Images/logo.inkscape.svg
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Images/logo.lrg.png
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Images/logo_plain.inkscape.svg
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Images/wiki
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Images/wiki/morganfp_atomenv1.png
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot1.jpg
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot2.jpg
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot3.jpg
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/AddingMolecules.htm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/AddingPoints.htm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/BuildingBoundsMatrix.htm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/EditingMolecules.htm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/ExploringHits.htm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/FDefFile.htm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/FindingMappings.htm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/GeneratingStructures.htm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/GettingStarted.htm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/Icon.ico
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/ImproveAlignments.htm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/Index.hhk
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/Intro.htm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/MatchingPharmacophores.htm
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/MethodOverview.htm
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D.hhc
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/References.htm
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Docs/RD.css
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/ConformerParser.cpp
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/rdConformerParser.cpp
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/testConformerParser.py
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/test_data
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/LEF
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/LEF/CreateFps.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/LEF/DistancePlot.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/LEF/DistancePredict.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/LEF/README.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/M_Kossner
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/M_Kossner/README
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/NP_Score
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/PBF
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/PBF/README
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/PBF/pbf.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/PBF/testData
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/PBF/testData/egfr.sdf
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/SA_Score
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/SA_Score/README
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/SA_Score/UnitTestSAScore.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/SA_Score/data
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/SA_Score/data/zim.100.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/SA_Score/fpscores.pkl.gz
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/SA_Score/sascorer.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/atomcontrib.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/cxn_tversky.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/data
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/ChEMBL_11265_actives.smi
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/final_fraggle_results.csv
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/fragmentation_tversky_out
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/query.smi
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/query_fragmentation.csv
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/fraggle.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/rdkit_tversky.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/readme.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/README.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/cansmirk.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/create_mmp_db.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample.smi
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_cansmirks.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_smi.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_subs.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_subs_smarts.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_trans.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_trans_smarts.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_smi_output.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_output.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_smart_output.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_output.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_smarts_output.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_fragmented.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_default.csv
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_maxheavy.csv
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_maxratio.csv
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_sym.csv
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_sym_maxheavy.csv
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mol_trans_output.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_smiles_mol_trans.smi
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_smirks.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_smirks_mol_trans.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_transfroms.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/indexing.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/mol_transform.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/rfrag.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/search_mmp_db.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/pzc
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/pzc/p_con.html
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/pzc/p_con.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Contrib/pzc/readme.md
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/CreateDb.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/SearchDb.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/TestDbCLI.py
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/moe_like.dsc
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/README
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr.2.smi
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr.sdf
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr.smi
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr_q1.mol
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/pubchem.200.sdf
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/loadErrors.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/Compounds.sqlt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/AtomPairs.sqlt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/Fingerprints.sqlt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/Descriptors.sqlt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/README
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/share/RDKit/license.txt
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libRDGeneral.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libRDGeneral.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libRDGeneral.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/Exceptions.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/BadFileException.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/BoostStartInclude.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/BoostEndInclude.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/Dict.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/FileParseException.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/Invariant.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/RDLog.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/StreamOps.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/types.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/utils.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/versions.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/LocaleSwitcher.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/Ranking.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hanoiSort.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/detail
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/detail/float_functions.hpp
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/detail/hash_float.hpp
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/extensions.hpp
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/hash.hpp
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/hash_fwd.hpp
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libRDBoost.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libRDBoost.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libRDBoost.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDBoost/Wrap.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDBoost/PySequenceHolder.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDBoost/list_indexing_suite.hpp
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDBoost/python.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/RDBoost/python_streambuf.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/rdBase.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libDataStructs.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libDataStructs.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libDataStructs.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DataStructs/base64.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DataStructs/BitOps.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DataStructs/BitVect.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DataStructs/BitVects.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DataStructs/BitVectUtils.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DataStructs/DatastructsException.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DataStructs/DiscreteDistMat.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DataStructs/DiscreteValueVect.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DataStructs/ExplicitBitVect.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DataStructs/SparseBitVect.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DataStructs/SparseIntVect.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DataStructs/FPBReader.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/cDataStructs.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libRDGeometryLib.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libRDGeometryLib.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libRDGeometryLib.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Geometry/Grid3D.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Geometry/GridUtils.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Geometry/point.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Geometry/Transform2D.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Geometry/Transform3D.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Geometry/Transform.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Geometry/UniformGrid3D.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Geometry/Utils.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Geometry/rdGeometry.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Numerics/Matrix.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Numerics/SquareMatrix.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Numerics/SymmMatrix.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Numerics/Vector.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libAlignment.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libAlignment.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libAlignment.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Numerics/Alignment/AlignPoints.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Numerics/rdAlignment.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libEigenSolvers.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libEigenSolvers.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libEigenSolvers.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libOptimizer.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libOptimizer.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libOptimizer.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Numerics/Optimizer/BFGSOpt.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libForceField.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libForceField.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libForceField.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/Contrib.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/ForceField.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/AngleBend.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/BondStretch.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/Contribs.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/DistanceConstraint.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/AngleConstraint.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/TorsionConstraint.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/PositionConstraint.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/Nonbonded.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/Params.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/Inversion.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/TorsionAngle.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/AngleBend.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/BondStretch.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/StretchBend.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/OopBend.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/TorsionAngle.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/Nonbonded.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/Contribs.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/AngleConstraint.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/PositionConstraint.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/Params.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libDistGeometry.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libDistGeometry.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libDistGeometry.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DistGeom/BoundsMatrix.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DistGeom/ChiralSet.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DistGeom/ChiralViolationContrib.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DistGeom/DistGeomUtils.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DistGeom/DistViolationContrib.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DistGeom/FourthDimContrib.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DistGeom/TriangleSmooth.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libCatalogs.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libCatalogs.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libCatalogs.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Catalogs/CatalogEntry.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Catalogs/Catalog.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Catalogs/CatalogParams.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libGraphMol.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libGraphMol.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libGraphMol.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Atom.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/atomic_data.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/AtomIterators.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Bond.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/BondIterators.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Canon.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Chirality.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Conformer.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/details.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/GraphMol.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolOps.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolPickler.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/PeriodicTable.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/QueryAtom.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/QueryBond.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/QueryOps.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/RDKitBase.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/RDKitQueries.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Resonance.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/RingInfo.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Rings.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ROMol.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/RWMol.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SanitException.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MonomerInfo.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/new_canon.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libDepictor.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libDepictor.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libDepictor.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Depictor/DepictUtils.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Depictor/RDDepictor.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDepictor.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libSmilesParse.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libSmilesParse.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libSmilesParse.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/primes.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libFileParsers.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libFileParsers.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libFileParsers.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/FileParsers.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/FileParserUtils.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MolSupplier.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MolWriters.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/SequenceParsers.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/SequenceWriters.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libSubstructMatch.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libSubstructMatch.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libSubstructMatch.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Substruct/SubstructMatch.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Substruct/SubstructUtils.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libChemReactions.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libChemReactions.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libChemReactions.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/Reaction.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionParser.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libChemTransforms.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libChemTransforms.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libChemTransforms.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libSubgraphs.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libSubgraphs.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libSubgraphs.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Subgraphs/Subgraphs.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libFilterCatalog.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libFilterCatalog.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libFilterCatalog.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfiltercatalog.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libFragCatalog.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libFragCatalog.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libFragCatalog.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatParams.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfragcatalog.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libDescriptors.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libDescriptors.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libDescriptors.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Crippen.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Lipinski.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MolDescriptors.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MolSurf.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MQN.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libFingerprints.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libFingerprints.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libFingerprints.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/AtomPairs.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/Fingerprints.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/MACCS.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libPartialCharges.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libPartialCharges.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libPartialCharges.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdPartialCharges.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolTransforms.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolTransforms.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolTransforms.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolTransforms/MolTransforms.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libForceFieldHelpers.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libForceFieldHelpers.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libForceFieldHelpers.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libDistGeomHelpers.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libDistGeomHelpers.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libDistGeomHelpers.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolAlign.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolAlign.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolAlign.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolAlign/AlignMolecules.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolChemicalFeatures.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolChemicalFeatures.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolChemicalFeatures.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolChemicalFeatures.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libShapeHelpers.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libShapeHelpers.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libShapeHelpers.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolCatalog.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolCatalog.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolCatalog.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolCatalog/MolCatalog.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolCatalog.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolDrawing/DrawingToCairo.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolDrawing/DrawingToSVG.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolDrawing/MolDrawing.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/MolDraw2D.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/MolDraw2DSVG.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/MolDraw2Dwx.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/MolDraw2DUtils.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolDraw2D.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolDraw2D.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolDraw2D.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libFMCS.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libFMCS.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libFMCS.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/FMCS.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/Graph.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/Seed.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/SeedSet.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/MatchTable.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/RingMatchTableSet.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/SubstructureCache.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/SubstructMatchCustom.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFMCS.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolHash.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolHash.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMolHash.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolHash/MolHash.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMMPA.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMMPA.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libMMPA.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MMPA/MMPA.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMMPA.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libReducedGraphs.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libReducedGraphs.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libReducedGraphs.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdReducedGraphs.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libSLNParse.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libSLNParse.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libSLNParse.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdchem.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdqueries.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolfiles.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Query/AndQuery.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Query/EqualityQuery.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Query/GreaterEqualQuery.h
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Query/OrQuery.h
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-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Query/QueryObjects.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Query/RangeQuery.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Query/SetQuery.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Query/XOrQuery.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/Features/Feature.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libSimDivPickers.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libSimDivPickers.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libSimDivPickers.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/SimDivPickers/DistPicker.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/SimDivPickers/MaxMinPicker.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/rdSimDivPickers.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libhc.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libhc.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libhc.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Clustering.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libInfoTheory.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libInfoTheory.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libInfoTheory.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/cQuantize.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libChemicalFeatures.so.1.2016.03.5
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libChemicalFeatures.so.1
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/libChemicalFeatures.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemicalFeatures.so
-- Installing: /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/RDPaths.py
make[1]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg/obj-arm-linux-gnueabihf'
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg'
dh_numpy
dh_install --list-missing
dh_install: Please use dh_missing --list-missing/--fail-missing instead
dh_install: This feature will be removed in compat 12.
dh_missing: usr/lib/rdkit-targets.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/rdkit-targets-none.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/rdkit-config.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/lib/rdkit-config-version.cmake exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/README exists in debian/tmp but is not installed to anywhere
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dh_missing: usr/share/RDKit/Docs/Book/images/similarity_map_charges.png exists in debian/tmp but is not installed to anywhere
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dh_missing: usr/share/RDKit/Docs/Book/images/similarity_map_rf.png exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Code/CodingStandards.md exists in debian/tmp but is not installed to anywhere
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dh_missing: usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.ai exists in debian/tmp but is not installed to anywhere
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dh_missing: usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.ai exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.jpg exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Images/logo.ai exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Images/logo.inkscape.svg exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Images/logo.lrg.png exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Images/logo.png exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Images/logo_plain.inkscape.svg exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Images/logo_plain.png exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Images/wiki/morganfp_atomenv1.png exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot1.jpg exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot2.jpg exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot3.jpg exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddingMolecules.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddingPoints.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/BuildingBoundsMatrix.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/EditingMolecules.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/ExploringHits.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/FDefFile.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/FindingMappings.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/GeneratingStructures.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/GettingStarted.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Icon.ico exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/ImproveAlignments.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Index.hhk exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Intro.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/MatchingPharmacophores.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/MethodOverview.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/RD.css exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D-Splash.jpg exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D.hhc exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D.hhp exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/References.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Refine-shot1.jpg exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Refine-shot2.jpg exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/SavingResults.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/ScoringAlignments.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Using.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/ViewOptions.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/contents.htm exists in debian/tmp but is not installed to anywhere
dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/index.htm exists in debian/tmp but is not installed to anywhere
The following debhelper tools have reported what they installed (with files per package)
* dh_install: librdkit-dev (41), librdkit1 (80), python-rdkit (1), rdkit-data (3), rdkit-doc (0)
If the missing files are installed by another tool, please file a bug against it.
When filing the report, if the tool is not part of debhelper itself, please reference the
"Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+).
(in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz)
Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built
For a short-term work-around: Add the files to debian/not-installed
mkdir -p /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/rdkit-doc/usr/share/doc/rdkit/
cp /<<BUILDDIR>>/rdkit-201603.5+dfsg/Docs/Book/_build/latex/RDKit.pdf /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/rdkit-doc/usr/share/doc/rdkit/
cp -a /<<BUILDDIR>>/rdkit-201603.5+dfsg/Docs/Book/_build/html /<<BUILDDIR>>/rdkit-201603.5+dfsg/debian/rdkit-doc/usr/share/doc/rdkit/
make[1]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg'
dh_installdocs -a -O--buildsystem=cmake -O--parallel
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg'
dh_installchangelogs ReleaseNotes.md
make[1]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg'
debian/rules override_dh_python2
make[1]: Entering directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg'
dh_python2 -ppython-rdkit
I: dh_python2 fs:322: renaming rdBase.so to rdBase.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdBase.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdChemReactions.so to rdChemReactions.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdChemReactions.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdChemicalFeatures.so to rdChemicalFeatures.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdChemicalFeatures.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdDepictor.so to rdDepictor.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdDepictor.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdDistGeom.so to rdDistGeom.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdDistGeom.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdFMCS.so to rdFMCS.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdFMCS.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdForceFieldHelpers.so to rdForceFieldHelpers.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdForceFieldHelpers.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdMMPA.so to rdMMPA.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMMPA.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdMolAlign.so to rdMolAlign.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolAlign.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdMolCatalog.so to rdMolCatalog.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolCatalog.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdMolChemicalFeatures.so to rdMolChemicalFeatures.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolChemicalFeatures.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdMolDescriptors.so to rdMolDescriptors.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolDescriptors.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdMolHash.so to rdMolHash.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolHash.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdMolTransforms.so to rdMolTransforms.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolTransforms.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdPartialCharges.so to rdPartialCharges.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdPartialCharges.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdReducedGraphs.so to rdReducedGraphs.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdReducedGraphs.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdSLNParse.so to rdSLNParse.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdSLNParse.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdShapeHelpers.so to rdShapeHelpers.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdShapeHelpers.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdchem.so to rdchem.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdchem.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdfiltercatalog.so to rdfiltercatalog.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdfiltercatalog.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdfragcatalog.so to rdfragcatalog.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdfragcatalog.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdmolfiles.so to rdmolfiles.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdmolfiles.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdmolops.so to rdmolops.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdmolops.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdqueries.so to rdqueries.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdqueries.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdMolDraw2D.so to rdMolDraw2D.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolDraw2D.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdMetricMatrixCalc.so to rdMetricMatrixCalc.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMetricMatrixCalc.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming cDataStructs.so to cDataStructs.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: cDataStructs.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming DistGeom.so to DistGeom.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: DistGeom.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdForceField.so to rdForceField.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdForceField.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdGeometry.so to rdGeometry.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdGeometry.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming Clustering.so to Clustering.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: Clustering.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming cQuantize.so to cQuantize.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: cQuantize.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdInfoTheory.so to rdInfoTheory.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdInfoTheory.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdAlignment.so to rdAlignment.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdAlignment.arm-linux-gnueabihf.so
I: dh_python2 fs:322: renaming rdSimDivPickers.so to rdSimDivPickers.arm-linux-gnueabihf.so
W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdSimDivPickers.arm-linux-gnueabihf.so
dh_numpy -ppython-rdkit
make[1]: Leaving directory '/<<BUILDDIR>>/rdkit-201603.5+dfsg'
dh_lintian -a -O--buildsystem=cmake -O--parallel
dh_perl -a -O--buildsystem=cmake -O--parallel
dh_link -a -O--buildsystem=cmake -O--parallel
dh_strip_nondeterminism -a -O--buildsystem=cmake -O--parallel
dh_compress -a -O--buildsystem=cmake -O--parallel
dh_fixperms -a -O--buildsystem=cmake -O--parallel
dh_missing -a -O--buildsystem=cmake -O--parallel
dh_strip -a -O--buildsystem=cmake -O--parallel
dh_makeshlibs -a -O--buildsystem=cmake -O--parallel
dh_shlibdeps -a -O--buildsystem=cmake -O--parallel
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libMMPA.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libChemTransforms.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libCatalogs.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libReducedGraphs.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libInfoTheory.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libRDGeneral.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libMolChemicalFeatures.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libGraphMol.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libChemicalFeatures.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libFragCatalog.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libFingerprints.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libSubstructMatch.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libAlignment.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libFMCS.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libPartialCharges.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libDistGeomHelpers.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libDistGeometry.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libSmilesParse.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libMolDraw2D.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libMolAlign.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libForceField.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libChemReactions.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libDepictor.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libFileParsers.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libRDGeometryLib.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libRDBoost.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libSubgraphs.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libMolCatalog.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libSimDivPickers.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libMolHash.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libMolTransforms.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libForceFieldHelpers.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libShapeHelpers.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libDataStructs.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libDescriptors.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libEigenSolvers.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libSLNParse.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libFilterCatalog.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/librdkit1/usr/lib/libOptimizer.so.1.2016.03.5 found in none of the libraries
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librdkit1/usr/lib/libRDBoost.so.1.2016.03.5 was not linked against libboost_atomic.so.1.62.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librdkit1/usr/lib/libRDBoost.so.1.2016.03.5 was not linked against libboost_chrono.so.1.62.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librdkit1/usr/lib/libDistGeomHelpers.so.1.2016.03.5 debian/librdkit1/usr/lib/libDistGeometry.so.1.2016.03.5 debian/librdkit1/usr/lib/libForceField.so.1.2016.03.5 debian/librdkit1/usr/lib/libForceFieldHelpers.so.1.2016.03.5 were not linked against libOptimizer.so.1 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librdkit1/usr/lib/libRDBoost.so.1.2016.03.5 was not linked against libboost_date_time.so.1.62.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdchem.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/rdSimDivPickers.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/rdInfoTheory.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFMCS.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMMPA.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DataStructs/cDataStructs.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Clustering.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfragcatalog.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/rdBase.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDepictor.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdReducedGraphs.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdPartialCharges.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemicalFeatures.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolfiles.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/Data/cQuantize.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Numerics/rdAlignment.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Geometry/rdGeometry.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolChemicalFeatures.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfiltercatalog.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolCatalog.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdqueries.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.arm-linux-gnueabihf.so were not linked against libboost_chrono.so.1.62.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdchem.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/rdSimDivPickers.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/rdInfoTheory.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFMCS.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMMPA.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DataStructs/cDataStructs.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Clustering.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfragcatalog.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/rdBase.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDepictor.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdReducedGraphs.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdPartialCharges.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemicalFeatures.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolfiles.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/Data/cQuantize.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Numerics/rdAlignment.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Geometry/rdGeometry.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolChemicalFeatures.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfiltercatalog.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolCatalog.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdqueries.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.arm-linux-gnueabihf.so were not linked against libboost_date_time.so.1.62.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdchem.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/rdSimDivPickers.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/rdInfoTheory.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFMCS.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMMPA.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DataStructs/cDataStructs.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Clustering.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfragcatalog.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/rdBase.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDepictor.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdReducedGraphs.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdPartialCharges.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemicalFeatures.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolfiles.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/Data/cQuantize.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Numerics/rdAlignment.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Geometry/rdGeometry.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolChemicalFeatures.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfiltercatalog.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolCatalog.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdqueries.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.arm-linux-gnueabihf.so were not linked against libboost_atomic.so.1.62.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdchem.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/rdSimDivPickers.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/rdInfoTheory.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFMCS.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMMPA.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DataStructs/cDataStructs.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Clustering.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfragcatalog.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/rdBase.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDepictor.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdReducedGraphs.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdPartialCharges.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemicalFeatures.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolfiles.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/Data/cQuantize.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Numerics/rdAlignment.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Geometry/rdGeometry.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolChemicalFeatures.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfiltercatalog.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolCatalog.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdqueries.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.arm-linux-gnueabihf.so were not linked against libboost_serialization.so.1.62.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.arm-linux-gnueabihf.so was not linked against libboost_regex.so.1.62.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.arm-linux-gnueabihf.so were not linked against libEigenSolvers.so.1 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.arm-linux-gnueabihf.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.arm-linux-gnueabihf.so were not linked against libOptimizer.so.1 (they use none of the library's symbols)
dh_installdeb -a -O--buildsystem=cmake -O--parallel
dh_gencontrol -a -O--buildsystem=cmake -O--parallel
dpkg-gencontrol: warning: Depends field of package librdkit-dev: unknown substitution variable ${shlibs:Depends}
dpkg-gencontrol: warning: package librdkit-dev: unused substitution variable ${python:Depends}
dpkg-gencontrol: warning: package librdkit1: unused substitution variable ${python:Depends}
dpkg-gencontrol: warning: package librdkit1: unused substitution variable ${python:Depends}
dh_md5sums -a -O--buildsystem=cmake -O--parallel
dh_builddeb -a -O--buildsystem=cmake -O--parallel
dpkg-deb: building package 'librdkit-dev' in '../librdkit-dev_201603.5+dfsg-1_armhf.deb'.
dpkg-deb: building package 'python-rdkit' in '../python-rdkit_201603.5+dfsg-1_armhf.deb'.
dpkg-deb: building package 'librdkit1' in '../librdkit1_201603.5+dfsg-1_armhf.deb'.
dpkg-deb: building package 'librdkit1-dbgsym' in '../librdkit1-dbgsym_201603.5+dfsg-1_armhf.deb'.
dpkg-deb: building package 'python-rdkit-dbgsym' in '../python-rdkit-dbgsym_201603.5+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../rdkit_201603.5+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build rdkit-201603.5+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-12-23T10:13:59Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
rdkit_201603.5+dfsg-1_armhf.changes:
------------------------------------
Format: 1.8
Date: Mon, 18 Dec 2017 12:09:00 +0100
Source: rdkit
Binary: python-rdkit rdkit-doc rdkit-data librdkit1 librdkit-dev
Architecture: armhf
Version: 201603.5+dfsg-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
librdkit-dev - Collection of cheminformatics and machine-learning software (deve
librdkit1 - Collection of cheminformatics and machine-learning software (shar
python-rdkit - Collection of cheminformatics and machine-learning software
rdkit-data - Collection of cheminformatics and machine-learning software (data
rdkit-doc - Collection of cheminformatics and machine-learning software (docu
Closes: 872246
Changes:
rdkit (201603.5+dfsg-1) unstable; urgency=medium
.
* Team upload.
* Moved packaging from SVN to Git
* DEP5
* Repack tarball to exclude *.chm file
* Build-Depends: latexmk
Closes: #872246
* Standards-Version: 4.1.2
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570f6238479f889f5621ea84d8c6972ec10adfd1d4fe75cee7aac66911977ec1 1723700 librdkit1_201603.5+dfsg-1_armhf.deb
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15f5404c329ea50a23005991dfd6d0c5063f5485c943110520311391a37b5cbb 3096728 python-rdkit_201603.5+dfsg-1_armhf.deb
e2ea1a7338b03f16962fe2187572ce61bb68e5aee04f31ce3880b694c35baf29 12125 rdkit_201603.5+dfsg-1_armhf.buildinfo
Files:
b2da0e115ed7d349a813cf6cfb52f89b 232500 libdevel optional librdkit-dev_201603.5+dfsg-1_armhf.deb
1508e509375ec680be2324e0ac0fa05d 34778284 debug optional librdkit1-dbgsym_201603.5+dfsg-1_armhf.deb
4908dfb5002e71ca1a2ee1040dbe5e9a 1723700 libs optional librdkit1_201603.5+dfsg-1_armhf.deb
5b3a96e9acbb70d9831ca7109e1418d4 25725420 debug optional python-rdkit-dbgsym_201603.5+dfsg-1_armhf.deb
efd1aa08b44560b037ab46de5ccd8467 3096728 python optional python-rdkit_201603.5+dfsg-1_armhf.deb
e5796bd12a7a2d615a426748b9864e6b 12125 science optional rdkit_201603.5+dfsg-1_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
librdkit-dev_201603.5+dfsg-1_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 232500 bytes: control archive=7092 bytes.
1512 bytes, 37 lines control
18622 bytes, 228 lines md5sums
Package: librdkit-dev
Source: rdkit
Version: 201603.5+dfsg-1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 1353
Depends: librdkit1 (= 201603.5+dfsg-1)
Section: libdevel
Priority: optional
Homepage: http://www.rdkit.org
Description: Collection of cheminformatics and machine-learning software (development files)
RDKit is a Python/C++ based cheminformatics and machine-learning software
environment. Features Include:
.
* Chemical reaction handling and transforms
* Substructure searching with SMARTS
* Canonical SMILES
* Molecule-molecule alignment
* Large number of molecular descriptors, including topological,
compositional, EState, SlogP/SMR, VSA and Feature-map vectors
* Fragmentation using RECAP rules
* 2D coordinate generation and depiction, including constrained depiction
* 3D coordinate generation using geometry embedding
* UFF and MMFF94 forcefields
* Chirality support, including calculation of (R/S) stereochemistry codes
* 2D pharmacophore searching
* Fingerprinting, including Daylight-like, atom pairs, topological
torsions, Morgan alogrithm and MACCS keys
* Calculation of shape similarity
* Multi-molecule maximum common substructure
* Machine-learning via clustering and information theory algorithms
* Gasteiger-Marsili partial charge calculation
.
File formats RDKit supports include MDL Mol, PDB, SDF, TDT, SMILES and RDKit
binary format.
.
This package contains the header files.
drwxr-xr-x root/root 0 2017-12-18 11:09 ./
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/Catalogs/
-rw-r--r-- root/root 16493 2016-10-10 08:34 ./usr/include/rdkit/Catalogs/Catalog.h
-rw-r--r-- root/root 1309 2016-10-10 08:34 ./usr/include/rdkit/Catalogs/CatalogEntry.h
-rw-r--r-- root/root 1169 2016-10-10 08:34 ./usr/include/rdkit/Catalogs/CatalogParams.h
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/ChemicalFeatures/
-rw-r--r-- root/root 991 2016-10-10 08:34 ./usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h
-rw-r--r-- root/root 2754 2016-10-10 08:34 ./usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/DataManip/
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/DataManip/MetricMatrixCalc/
-rw-r--r-- root/root 1811 2016-10-10 08:34 ./usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h
-rw-r--r-- root/root 3476 2016-10-10 08:34 ./usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/DataStructs/
-rw-r--r-- root/root 9645 2016-10-10 08:34 ./usr/include/rdkit/DataStructs/BitOps.h
-rw-r--r-- root/root 2454 2016-10-10 08:34 ./usr/include/rdkit/DataStructs/BitVect.h
-rw-r--r-- root/root 1010 2016-10-10 08:34 ./usr/include/rdkit/DataStructs/BitVectUtils.h
-rw-r--r-- root/root 554 2016-10-10 08:34 ./usr/include/rdkit/DataStructs/BitVects.h
-rw-r--r-- root/root 786 2016-10-10 08:34 ./usr/include/rdkit/DataStructs/DatastructsException.h
-rw-r--r-- root/root 789 2016-10-10 08:34 ./usr/include/rdkit/DataStructs/DiscreteDistMat.h
-rw-r--r-- root/root 4257 2016-10-10 08:34 ./usr/include/rdkit/DataStructs/DiscreteValueVect.h
-rw-r--r-- root/root 3045 2016-10-10 08:34 ./usr/include/rdkit/DataStructs/ExplicitBitVect.h
-rw-r--r-- root/root 9338 2016-10-10 08:34 ./usr/include/rdkit/DataStructs/FPBReader.h
-rw-r--r-- root/root 2904 2016-10-10 08:34 ./usr/include/rdkit/DataStructs/SparseBitVect.h
-rw-r--r-- root/root 16329 2016-10-10 08:34 ./usr/include/rdkit/DataStructs/SparseIntVect.h
-rw-r--r-- root/root 1147 2016-10-10 08:34 ./usr/include/rdkit/DataStructs/base64.h
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/DistGeom/
-rw-r--r-- root/root 3405 2016-10-10 08:34 ./usr/include/rdkit/DistGeom/BoundsMatrix.h
-rw-r--r-- root/root 1574 2016-10-10 08:34 ./usr/include/rdkit/DistGeom/ChiralSet.h
-rw-r--r-- root/root 3493 2016-10-10 08:34 ./usr/include/rdkit/DistGeom/ChiralViolationContrib.h
-rw-r--r-- root/root 6996 2016-10-10 08:34 ./usr/include/rdkit/DistGeom/DistGeomUtils.h
-rw-r--r-- root/root 1769 2016-10-10 08:34 ./usr/include/rdkit/DistGeom/DistViolationContrib.h
-rw-r--r-- root/root 1923 2016-10-10 08:34 ./usr/include/rdkit/DistGeom/FourthDimContrib.h
-rw-r--r-- root/root 1101 2016-10-10 08:34 ./usr/include/rdkit/DistGeom/TriangleSmooth.h
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/Features/
-rw-r--r-- root/root 2858 2016-10-10 08:34 ./usr/include/rdkit/Features/Feature.h
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/ForceField/
-rw-r--r-- root/root 1046 2016-10-10 08:34 ./usr/include/rdkit/ForceField/Contrib.h
-rw-r--r-- root/root 6512 2016-10-10 08:34 ./usr/include/rdkit/ForceField/ForceField.h
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/ForceField/MMFF/
-rw-r--r-- root/root 2383 2016-10-10 08:34 ./usr/include/rdkit/ForceField/MMFF/AngleBend.h
-rw-r--r-- root/root 2041 2016-10-10 08:34 ./usr/include/rdkit/ForceField/MMFF/AngleConstraint.h
-rw-r--r-- root/root 2000 2016-10-10 08:34 ./usr/include/rdkit/ForceField/MMFF/BondStretch.h
-rw-r--r-- root/root 633 2016-10-10 08:34 ./usr/include/rdkit/ForceField/MMFF/Contribs.h
-rw-r--r-- root/root 1971 2016-10-10 08:34 ./usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h
-rw-r--r-- root/root 3515 2016-10-10 08:34 ./usr/include/rdkit/ForceField/MMFF/Nonbonded.h
-rw-r--r-- root/root 2037 2016-10-10 08:34 ./usr/include/rdkit/ForceField/MMFF/OopBend.h
-rw-r--r-- root/root 55346 2016-10-10 08:34 ./usr/include/rdkit/ForceField/MMFF/Params.h
-rw-r--r-- root/root 1595 2016-10-10 08:34 ./usr/include/rdkit/ForceField/MMFF/PositionConstraint.h
-rw-r--r-- root/root 2219 2016-10-10 08:34 ./usr/include/rdkit/ForceField/MMFF/StretchBend.h
-rw-r--r-- root/root 2579 2016-10-10 08:34 ./usr/include/rdkit/ForceField/MMFF/TorsionAngle.h
-rw-r--r-- root/root 2326 2016-10-10 08:34 ./usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/ForceField/UFF/
-rw-r--r-- root/root 3331 2016-10-10 08:34 ./usr/include/rdkit/ForceField/UFF/AngleBend.h
-rw-r--r-- root/root 2037 2016-10-10 08:34 ./usr/include/rdkit/ForceField/UFF/AngleConstraint.h
-rw-r--r-- root/root 2409 2016-10-10 08:34 ./usr/include/rdkit/ForceField/UFF/BondStretch.h
-rw-r--r-- root/root 569 2016-10-10 08:34 ./usr/include/rdkit/ForceField/UFF/Contribs.h
-rw-r--r-- root/root 1968 2016-10-10 08:34 ./usr/include/rdkit/ForceField/UFF/DistanceConstraint.h
-rw-r--r-- root/root 2445 2016-10-10 08:34 ./usr/include/rdkit/ForceField/UFF/Inversion.h
-rw-r--r-- root/root 2750 2016-10-10 08:34 ./usr/include/rdkit/ForceField/UFF/Nonbonded.h
-rw-r--r-- root/root 4269 2016-10-10 08:34 ./usr/include/rdkit/ForceField/UFF/Params.h
-rw-r--r-- root/root 1592 2016-10-10 08:34 ./usr/include/rdkit/ForceField/UFF/PositionConstraint.h
-rw-r--r-- root/root 4105 2016-10-10 08:34 ./usr/include/rdkit/ForceField/UFF/TorsionAngle.h
-rw-r--r-- root/root 2323 2016-10-10 08:34 ./usr/include/rdkit/ForceField/UFF/TorsionConstraint.h
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/Geometry/
-rw-r--r-- root/root 1454 2016-10-10 08:34 ./usr/include/rdkit/Geometry/Grid3D.h
-rw-r--r-- root/root 1416 2016-10-10 08:34 ./usr/include/rdkit/Geometry/GridUtils.h
-rw-r--r-- root/root 419 2016-10-10 08:34 ./usr/include/rdkit/Geometry/Transform.h
-rw-r--r-- root/root 2500 2016-10-10 08:34 ./usr/include/rdkit/Geometry/Transform2D.h
-rw-r--r-- root/root 2659 2016-10-10 08:34 ./usr/include/rdkit/Geometry/Transform3D.h
-rw-r--r-- root/root 8119 2016-10-10 08:34 ./usr/include/rdkit/Geometry/UniformGrid3D.h
-rw-r--r-- root/root 3283 2016-10-10 08:34 ./usr/include/rdkit/Geometry/Utils.h
-rw-r--r-- root/root 13354 2016-10-10 08:34 ./usr/include/rdkit/Geometry/point.h
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/GraphMol/
-rw-r--r-- root/root 16667 2016-10-10 08:34 ./usr/include/rdkit/GraphMol/Atom.h
-rw-r--r-- root/root 5471 2016-10-10 08:34 ./usr/include/rdkit/GraphMol/AtomIterators.h
-rw-r--r-- root/root 13541 2016-10-10 08:34 ./usr/include/rdkit/GraphMol/Bond.h
-rw-r--r-- root/root 2268 2016-10-10 08:34 ./usr/include/rdkit/GraphMol/BondIterators.h
-rw-r--r-- root/root 3686 2016-10-10 08:34 ./usr/include/rdkit/GraphMol/Canon.h
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/GraphMol/ChemReactions/
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-rw-r--r-- root/root 5936 2016-10-10 08:34 ./usr/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h
-rw-r--r-- root/root 4919 2016-10-10 08:34 ./usr/include/rdkit/GraphMol/ChemReactions/ReactionParser.h
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drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/GraphMol/ChemTransforms/
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-rw-r--r-- root/root 3847 2016-10-10 08:34 ./usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h
-rw-r--r-- root/root 859 2016-10-10 08:34 ./usr/include/rdkit/GraphMol/Chirality.h
-rw-r--r-- root/root 4141 2016-10-10 08:34 ./usr/include/rdkit/GraphMol/Conformer.h
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/GraphMol/Depictor/
-rw-r--r-- root/root 11517 2016-10-10 08:34 ./usr/include/rdkit/GraphMol/Depictor/DepictUtils.h
-rw-r--r-- root/root 18827 2016-10-10 08:34 ./usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h
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drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/GraphMol/Descriptors/
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drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/GraphMol/DistGeomHelpers/
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drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/GraphMol/FMCS/
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-rw-r--r-- root/root 643 2016-10-10 08:34 ./usr/include/rdkit/GraphMol/Fingerprints/MACCS.h
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drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/
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drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/
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drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/
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drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/GraphMol/FragCatalog/
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drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/GraphMol/MMPA/
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drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/GraphMol/MolCatalog/
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drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/include/rdkit/GraphMol/MolDrawing/
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libFMCS.so -> libFMCS.so.1
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libFingerprints.so -> libFingerprints.so.1
lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libForceField.so -> libForceField.so.1
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librdkit1-dbgsym_201603.5+dfsg-1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 34778284 bytes: control archive=2344 bytes.
1973 bytes, 12 lines control
4240 bytes, 40 lines md5sums
Package: librdkit1-dbgsym
Source: rdkit
Version: 201603.5+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 35930
Depends: librdkit1 (= 201603.5+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for librdkit1
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/share/doc/librdkit1-dbgsym -> librdkit1
librdkit1_201603.5+dfsg-1_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 1723700 bytes: control archive=2652 bytes.
1750 bytes, 37 lines control
3158 bytes, 44 lines md5sums
1069 bytes, 40 lines shlibs
63 bytes, 2 lines triggers
Package: librdkit1
Source: rdkit
Version: 201603.5+dfsg-1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 7228
Depends: libboost-atomic1.62.0, libboost-chrono1.62.0, libboost-date-time1.62.0, libboost-python1.62.0, libboost-regex1.62.0, libboost-serialization1.62.0, libboost-system1.62.0, libboost-thread1.62.0, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libpython2.7 (>= 2.7), libstdc++6 (>= 5.2)
Section: libs
Priority: optional
Homepage: http://www.rdkit.org
Description: Collection of cheminformatics and machine-learning software (shared libraries)
RDKit is a Python/C++ based cheminformatics and machine-learning software
environment. Features Include:
.
* Chemical reaction handling and transforms
* Substructure searching with SMARTS
* Canonical SMILES
* Molecule-molecule alignment
* Large number of molecular descriptors, including topological,
compositional, EState, SlogP/SMR, VSA and Feature-map vectors
* Fragmentation using RECAP rules
* 2D coordinate generation and depiction, including constrained depiction
* 3D coordinate generation using geometry embedding
* UFF and MMFF94 forcefields
* Chirality support, including calculation of (R/S) stereochemistry codes
* 2D pharmacophore searching
* Fingerprinting, including Daylight-like, atom pairs, topological
torsions, Morgan alogrithm and MACCS keys
* Calculation of shape similarity
* Multi-molecule maximum common substructure
* Machine-learning via clustering and information theory algorithms
* Gasteiger-Marsili partial charge calculation
.
File formats RDKit supports include MDL Mol, PDB, SDF, TDT, SMILES and RDKit
binary format.
.
This package contains the shared libraries.
drwxr-xr-x root/root 0 2017-12-18 11:09 ./
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-rw-r--r-- root/root 26276 2017-12-18 11:09 ./usr/lib/libAlignment.so.1.2016.03.5
lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libCatalogs.so.1 -> libCatalogs.so.1.2016.03.5
-rw-r--r-- root/root 5556 2017-12-18 11:09 ./usr/lib/libCatalogs.so.1.2016.03.5
lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libChemReactions.so.1 -> libChemReactions.so.1.2016.03.5
-rw-r--r-- root/root 265264 2017-12-18 11:09 ./usr/lib/libChemReactions.so.1.2016.03.5
lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libChemTransforms.so.1 -> libChemTransforms.so.1.2016.03.5
-rw-r--r-- root/root 187244 2017-12-18 11:09 ./usr/lib/libChemTransforms.so.1.2016.03.5
lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libChemicalFeatures.so.1 -> libChemicalFeatures.so.1.2016.03.5
-rw-r--r-- root/root 13852 2017-12-18 11:09 ./usr/lib/libChemicalFeatures.so.1.2016.03.5
lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libDataStructs.so.1 -> libDataStructs.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libDepictor.so.1 -> libDepictor.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libDescriptors.so.1 -> libDescriptors.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libDistGeomHelpers.so.1 -> libDistGeomHelpers.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libEigenSolvers.so.1 -> libEigenSolvers.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libFMCS.so.1 -> libFMCS.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libFileParsers.so.1 -> libFileParsers.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libFilterCatalog.so.1 -> libFilterCatalog.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libFingerprints.so.1 -> libFingerprints.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libForceField.so.1 -> libForceField.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libForceFieldHelpers.so.1 -> libForceFieldHelpers.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libFragCatalog.so.1 -> libFragCatalog.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libInfoTheory.so.1 -> libInfoTheory.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libMMPA.so.1 -> libMMPA.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libMolAlign.so.1 -> libMolAlign.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libMolCatalog.so.1 -> libMolCatalog.so.1.2016.03.5
-rw-r--r-- root/root 30452 2017-12-18 11:09 ./usr/lib/libMolCatalog.so.1.2016.03.5
lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libMolChemicalFeatures.so.1 -> libMolChemicalFeatures.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libMolHash.so.1 -> libMolHash.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libMolTransforms.so.1 -> libMolTransforms.so.1.2016.03.5
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/lib/libRDGeneral.so.1 -> libRDGeneral.so.1.2016.03.5
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drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/share/doc/librdkit1/
-rw-r--r-- root/root 2656 2017-12-18 11:09 ./usr/share/doc/librdkit1/changelog.Debian.gz
-rw-r--r-- root/root 43384 2016-10-10 08:34 ./usr/share/doc/librdkit1/changelog.gz
-rw-r--r-- root/root 6729 2017-12-18 11:09 ./usr/share/doc/librdkit1/copyright
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/share/lintian/
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-rw-r--r-- root/root 107 2017-12-18 11:09 ./usr/share/lintian/overrides/librdkit1
python-rdkit-dbgsym_201603.5+dfsg-1_armhf.deb
---------------------------------------------
new Debian package, version 2.0.
size 25725420 bytes: control archive=2148 bytes.
1797 bytes, 13 lines control
3710 bytes, 35 lines md5sums
Package: python-rdkit-dbgsym
Source: rdkit
Version: 201603.5+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 29646
Depends: python-rdkit (= 201603.5+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for python-rdkit
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lrwxrwxrwx root/root 0 2017-12-18 11:09 ./usr/share/doc/python-rdkit-dbgsym -> python-rdkit
python-rdkit_201603.5+dfsg-1_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 3096728 bytes: control archive=31180 bytes.
1927 bytes, 38 lines control
142156 bytes, 1274 lines md5sums
162 bytes, 9 lines * postinst #!/bin/sh
263 bytes, 14 lines * prerm #!/bin/sh
Package: python-rdkit
Source: rdkit
Version: 201603.5+dfsg-1
Architecture: armhf
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 32958
Depends: fonts-freefont-ttf, rdkit-data, python (<< 2.8), python (>= 2.7~), python-numpy (>= 1:1.13.1), python-numpy-abi9, python:any (<< 2.8), python:any (>= 2.7.5-5~), libboost-atomic1.62.0, libboost-chrono1.62.0, libboost-date-time1.62.0, libboost-python1.62.0, libboost-regex1.62.0, libboost-serialization1.62.0, libboost-system1.62.0, libboost-thread1.62.0, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libpython2.7 (>= 2.7), librdkit1, libstdc++6 (>= 5.2)
Suggests: rdkit-doc
Provides: python2.7-rdkit
Section: python
Priority: optional
Homepage: http://www.rdkit.org
Description: Collection of cheminformatics and machine-learning software
RDKit is a Python/C++ based cheminformatics and machine-learning software
environment. Features Include:
.
* Chemical reaction handling and transforms
* Substructure searching with SMARTS
* Canonical SMILES
* Molecule-molecule alignment
* Large number of molecular descriptors, including topological,
compositional, EState, SlogP/SMR, VSA and Feature-map vectors
* Fragmentation using RECAP rules
* 2D coordinate generation and depiction, including constrained depiction
* 3D coordinate generation using geometry embedding
* UFF and MMFF94 forcefields
* Chirality support, including calculation of (R/S) stereochemistry codes
* 2D pharmacophore searching
* Fingerprinting, including Daylight-like, atom pairs, topological
torsions, Morgan alogrithm and MACCS keys
* Calculation of shape similarity
* Multi-molecule maximum common substructure
* Machine-learning via clustering and information theory algorithms
* Gasteiger-Marsili partial charge calculation
.
File formats RDKit supports include MDL Mol, PDB, SDF, TDT, SMILES and RDKit
binary format.
Python-Version: 2.7
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drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/share/pyshared/
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/share/pyshared/rdkit/
drwxr-xr-x root/root 0 2017-12-18 11:09 ./usr/share/pyshared/rdkit/Chem/
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 1596336
Build-Time: 9326
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 2013
Job: rdkit_201603.5+dfsg-1
Machine Architecture: armhf
Package: rdkit
Package-Time: 11399
Source-Version: 201603.5+dfsg-1
Space: 1596336
Status: successful
Version: 201603.5+dfsg-1
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Finished at 2017-12-23T10:13:59Z
Build needed 03:09:59, 1596336k disc space