rapmap →
0.15.0+dfsg-2 →
armhf → 2021-10-17 09:37:55
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| rapmap 0.15.0+dfsg-2 (armhf) Sun, 17 Oct 2021 09:24:37 +0000 |
+==============================================================================+
Package: rapmap
Version: 0.15.0+dfsg-2
Source Version: 0.15.0+dfsg-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-715178fc-b33d-4e9f-bdd5-ad750eb66ca3' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.9 MB in 25s (1016 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'rapmap' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/rapmap.git
Please use:
git clone https://salsa.debian.org/med-team/rapmap.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 642 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main rapmap 0.15.0+dfsg-2 (dsc) [2347 B]
Get:2 http://172.17.0.1/private bookworm-staging/main rapmap 0.15.0+dfsg-2 (tar) [625 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main rapmap 0.15.0+dfsg-2 (diff) [14.8 kB]
Fetched 642 kB in 0s (3616 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/rapmap-R8fS28/rapmap-0.15.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/rapmap-R8fS28' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-RqxRwB/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-RqxRwB/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-RqxRwB/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-RqxRwB/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-RqxRwB/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-RqxRwB/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-RqxRwB/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-RqxRwB/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2902 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-RqxRwB/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libdivsufsort-dev, libcereal-dev, libjellyfish-2.0-dev, libjemalloc-dev, libsimde-dev, libsparsehash-dev, libspdlog-dev, libtclap-dev, pkg-config, python3-markdown, python3
Filtered Build-Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libdivsufsort-dev, libcereal-dev, libjellyfish-2.0-dev, libjemalloc-dev, libsimde-dev, libsparsehash-dev, libspdlog-dev, libtclap-dev, pkg-config, python3-markdown, python3
dpkg-deb: building package 'sbuild-build-depends-rapmap-dummy' in '/<<BUILDDIR>>/resolver-RqxRwB/apt_archive/sbuild-build-depends-rapmap-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-rapmap-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-RqxRwB/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-RqxRwB/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-RqxRwB/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-RqxRwB/apt_archive ./ Sources [586 B]
Get:5 copy:/<<BUILDDIR>>/resolver-RqxRwB/apt_archive ./ Packages [666 B]
Fetched 2585 B in 1s (3442 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install rapmap build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils catch2 cmake
cmake-data debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism
dwz emacsen-common file gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libarchive13 libbrotli1 libcereal-dev libcurl4
libdebhelper-perl libdivsufsort-dev libdivsufsort3 libelf1 libexpat1 libffi8
libfile-stripnondeterminism-perl libfmt-dev libfmt7 libglib2.0-0 libicu67
libjellyfish-2.0-2 libjellyfish-2.0-dev libjemalloc-dev libjemalloc2
libjsoncpp24 libmagic-mgc libmagic1 libmpdec3 libncurses6 libnghttp2-14
libpipeline1 libprocps8 libpsl5 libpython3-stdlib libpython3.9-minimal
libpython3.9-stdlib librhash0 librtmp1 libsigsegv2 libsimde-dev
libsparsehash-dev libspdlog-dev libspdlog1 libssh2-1 libsub-override-perl
libtclap-dev libtool libuchardet0 libuv1 libxml2 m4 man-db media-types
pkg-config po-debconf procps python3 python3-markdown python3-minimal
python3-pkg-resources python3.9 python3.9-minimal rapidjson-dev
sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make
gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libfmt-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-tk python3-venv
python-markdown-doc python3-setuptools python3.9-venv python3.9-doc
binfmt-support rapidjson-doc
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs libgpm2 publicsuffix libltdl-dev
libmail-sendmail-perl psmisc python3-pygments python3-yaml
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils catch2 cmake
cmake-data debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism
dwz emacsen-common file gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libarchive13 libbrotli1 libcereal-dev libcurl4
libdebhelper-perl libdivsufsort-dev libdivsufsort3 libelf1 libexpat1 libffi8
libfile-stripnondeterminism-perl libfmt-dev libfmt7 libglib2.0-0 libicu67
libjellyfish-2.0-2 libjellyfish-2.0-dev libjemalloc-dev libjemalloc2
libjsoncpp24 libmagic-mgc libmagic1 libmpdec3 libncurses6 libnghttp2-14
libpipeline1 libprocps8 libpsl5 libpython3-stdlib libpython3.9-minimal
libpython3.9-stdlib librhash0 librtmp1 libsigsegv2 libsimde-dev
libsparsehash-dev libspdlog-dev libspdlog1 libssh2-1 libsub-override-perl
libtclap-dev libtool libuchardet0 libuv1 libxml2 m4 man-db media-types
pkg-config po-debconf procps python3 python3-markdown python3-minimal
python3-pkg-resources python3.9 python3.9-minimal rapidjson-dev
sbuild-build-depends-rapmap-dummy sensible-utils zlib1g-dev
0 upgraded, 81 newly installed, 0 to remove and 35 not upgraded.
Need to get 41.9 MB of archives.
After this operation, 156 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-RqxRwB/apt_archive ./ sbuild-build-depends-rapmap-dummy 0.invalid.0 [952 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-3 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.7-4+rpi1 [794 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-2 [80.3 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.7-4+rpi1 [1632 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf libffi8 armhf 3.4.2-3 [21.3 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.7-4+rpi1 [1618 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf python3.9 armhf 3.9.7-4+rpi1 [480 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf python3 armhf 3.9.2-3 [37.9 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.2+20201114-4 [79.7 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libprocps8 armhf 2:3.3.17-5 [60.5 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf procps armhf 2:3.3.17-5 [475 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf catch2 armhf 2.13.7-1 [437 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libarchive13 armhf 3.4.3-2 [294 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libcurl4 armhf 7.74.0-1.3 [305 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libjsoncpp24 armhf 1.9.4-5 [67.4 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf librhash0 armhf 1.4.2-1 [141 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libuv1 armhf 1.42.0-1 [121 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf dh-elpa-helper all 2.0.9 [11.2 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf emacsen-common all 3.0.4 [19.3 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf cmake-data all 3.21.3-4 [1878 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf cmake armhf 3.21.3-4 [3468 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf rapidjson-dev all 1.1.0+dfsg2-7 [98.9 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libcereal-dev all 1.3.0+dfsg-2 [210 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libdivsufsort3 armhf 2.0.1-5 [43.2 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libdivsufsort-dev armhf 2.0.1-5 [19.1 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libfmt7 armhf 7.1.3+ds1-5 [101 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libfmt-dev armhf 7.1.3+ds1-5 [142 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.0-1 [1208 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libjellyfish-2.0-2 armhf 2.3.0-12 [56.4 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libjellyfish-2.0-dev armhf 2.3.0-12 [129 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf libjemalloc2 armhf 5.2.1-3 [188 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libjemalloc-dev armhf 5.2.1-3 [416 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libsimde-dev all 0.7.2-5 [259 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libsparsehash-dev all 2.0.3-2 [76.8 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libspdlog1 armhf 1:1.8.5+ds-3 [80.9 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf libspdlog-dev armhf 1:1.8.5+ds-3 [180 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf libtclap-dev armhf 1.2.4-3 [7868 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf python3-pkg-resources all 58.2.0-1 [192 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf python3-markdown all 3.3.4-1 [71.4 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpython3.9-minimal:armhf (3.9.7-4+rpi1) ...
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Setting up python3.9 (3.9.7-4+rpi1) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
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Setting up sbuild-build-depends-rapmap-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-9+rpi1 gcc-10_10.3.0-9+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-3 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 catch2_2.13.7-1 cmake_3.21.3-4 cmake-data_3.21.3-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-9+rpi1 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-elpa-helper_2.0.9 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 emacsen-common_3.0.4 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-9+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-9+rpi1 gcc-10-base_10.3.0-9+rpi1 gcc-11-base_11.2.0-4+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libasan6_11.2.0-4+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-4+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-5+rpi1 libblkid1_2.37.2-1 libbrotli1_1.0.9-2+b1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-4+rpi1 libcereal-dev_1.3.0+dfsg-2 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl4_7.74.0-1.3 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdivsufsort-dev_2.0.1-5 libdivsufsort3_2.0.1-5 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libexpat1_2.4.1-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.12.0-1 libfmt-dev_7.1.3+ds1-5 libfmt7_7.1.3+ds1-5 libgcc-10-dev_10.3.0-9+rpi1 libgcc-s1_11.2.0-4+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libglib2.0-0_2.70.0-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-4+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.23-1 libjellyfish-2.0-2_2.3.0-12 libjellyfish-2.0-dev_2.3.0-12 libjemalloc-dev_5.2.1-3 libjemalloc2_5.2.1-3 libjsoncpp24_1.9.4-5 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-4 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libprocps8_2:3.3.17-5 libpsl5_0.21.0-1.2 libpython3-stdlib_3.9.2-3 libpython3.9-minimal_3.9.7-4+rpi1 libpython3.9-stdlib_3.9.7-4+rpi1 libreadline8_8.1-2 librhash0_1.4.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsimde-dev_0.7.2-5 libsmartcols1_2.37.2-1 libsparsehash-dev_2.0.3-2 libspdlog-dev_1:1.8.5+ds-3 libspdlog1_1:1.8.5+ds-3 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.9-1+rpi1 libtasn1-6_4.17.0-2 libtclap-dev_1.2.4-3 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-4+rpi1 libuchardet0_0.0.7-1 libudev1_247.9-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-1 libuv1_1.42.0-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mount_2.37.2-1 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 procps_2:3.3.17-5 python3_3.9.2-3 python3-markdown_3.3.4-1 python3-minimal_3.9.2-3 python3-pkg-resources_58.2.0-1 python3.9_3.9.7-4+rpi1 python3.9-minimal_3.9.7-4+rpi1 rapidjson-dev_1.1.0+dfsg2-7 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-rapmap-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.37.2-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.QWsM09Kq/trustedkeys.kbx': General error
gpgv: Signature made Tue Oct 12 10:10:36 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./rapmap_0.15.0+dfsg-2.dsc
dpkg-source: info: extracting rapmap in /<<BUILDDIR>>/rapmap-0.15.0+dfsg
dpkg-source: info: unpacking rapmap_0.15.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking rapmap_0.15.0+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use-debian-libs.patch
dpkg-source: info: applying use_shared_libs.patch
dpkg-source: info: applying avoid_privacy_breach.patch
dpkg-source: info: applying spelling
dpkg-source: info: applying portable_pause
dpkg-source: info: applying no_gomp_needed
dpkg-source: info: applying simde
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-715178fc-b33d-4e9f-bdd5-ad750eb66ca3
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package rapmap
dpkg-buildpackage: info: source version 0.15.0+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg'
dh_clean README.html sample_data/sample_quasi_index/ sample_data/sample_quasi_index_ph/ sample_data/sample_quasi_map.sam sample_data/sample_quasi_map_ph.sam
make[1]: Leaving directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg'
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg'
dh_auto_configure -- -DJELLYFISH_ROOT=/usr -DNO_NATIVE_ARCH=true
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DJELLYFISH_ROOT=/usr -DNO_NATIVE_ARCH=true ..
CC: gcc
CC version:
-- The C compiler identification is GNU 10.3.0
-- The CXX compiler identification is GNU 10.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
version: 0.6.0
-- DISABLING NATIVE ARCH.
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
Making Default build type
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Found Cereal: /usr/include (Required is at least version "1.2.2")
-- Cereal found (include: /usr/include)
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2")
-- Found Jemalloc: /usr/lib/arm-linux-gnueabihf/libjemalloc.so (found version "5.2.1-0-gea6b3e973b477b8061e0076bb257dbd7f3faa756")
Found Jemalloc library --- using this memory allocator
CPACK_SOURCE_IGNORE_FILES = .git/
CMAKE_SYSTEM_PROCESSOR: armv7l
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
JELLYFISH_ROOT
-- Build files have been written to: /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg'
dh_auto_build
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[2]: Entering directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<BUILDDIR>>/rapmap-0.15.0+dfsg -B/<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/depend
make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf'
make[4]: Entering directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rapmap-0.15.0+dfsg /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/ksw2pp_sse2.dir/DependInfo.cmake --color=
cd /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rapmap-0.15.0+dfsg /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/ksw2pp_basic.dir/DependInfo.cmake --color=
make[4]: Leaving directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf'
make[4]: Leaving directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/ksw2pp_basic.dir/build.make src/CMakeFiles/ksw2pp_basic.dir/build
make -f src/CMakeFiles/ksw2pp_sse2.dir/build.make src/CMakeFiles/ksw2pp_sse2.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf'
make[4]: Entering directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf'
[ 7%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o
[ 7%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o
cd /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/digestpp -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external/cereal/include -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o -c /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extz2_sse.c
cd /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/digestpp -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external/cereal/include -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o -c /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extd2_sse.c
[ 11%] Building C object src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o
cd /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/digestpp -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external/cereal/include -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o -c /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extf2_sse.c
[ 15%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o
cd /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o -c /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/ksw2pp/kalloc.c
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/ksw2pp/kalloc.c: In function 'morecore':
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/ksw2pp/kalloc.c:49:33: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
49 | fprintf(stderr, "[morecore] %lu bytes requested but not available.\n", rnu * sizeof(size_t));
| ~~^ ~~~~~~~~~~~~~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/ksw2pp/kalloc.c: In function 'km_stat':
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/ksw2pp/kalloc.c:212:35: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
212 | fprintf(stderr, "[kr_stat] tot=%lu, free=%lu, n_block=%u, max_block=%lu, frag_len=%.3fK\n",
| ~~^
| |
| long unsigned int
| %u
213 | km->total_allocated, n_units * sizeof(size_t), n_blocks, max_block * sizeof(size_t), frag);
| ~~~~~~~~~~~~~~~~~~~
| |
| size_t {aka unsigned int}
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/ksw2pp/kalloc.c:212:45: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'unsigned int' [-Wformat=]
212 | fprintf(stderr, "[kr_stat] tot=%lu, free=%lu, n_block=%u, max_block=%lu, frag_len=%.3fK\n",
| ~~^
| |
| long unsigned int
| %u
213 | km->total_allocated, n_units * sizeof(size_t), n_blocks, max_block * sizeof(size_t), frag);
| ~~~~~~~~~~~~~~~~~~~~~~~~
| |
| unsigned int
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/ksw2pp/kalloc.c:212:72: warning: format '%lu' expects argument of type 'long unsigned int', but argument 6 has type 'size_t' {aka 'unsigned int'} [-Wformat=]
212 | fprintf(stderr, "[kr_stat] tot=%lu, free=%lu, n_block=%u, max_block=%lu, frag_len=%.3fK\n",
| ~~^
| |
| long unsigned int
| %u
213 | km->total_allocated, n_units * sizeof(size_t), n_blocks, max_block * sizeof(size_t), frag);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| size_t {aka unsigned int}
[ 19%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o
cd /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o -c /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_extd.c
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[ 26%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o
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[ 30%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o
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[ 34%] Building C object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o
cd /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cc -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o -c /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_gg2_sse.c
[ 38%] Building CXX object src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o
cd /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o -c /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/ksw2pp/KSW2Aligner.cpp
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cd /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/rapmap-0.15.0+dfsg /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/ksw2pp.dir/DependInfo.cmake --color=
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make[4]: Entering directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf'
[ 42%] Linking CXX static library libksw2pp.a
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cd /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksw2pp.dir/link.txt --verbose=1
/usr/bin/ar qc libksw2pp.a CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o
/usr/bin/ranlib libksw2pp.a
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make[4]: Entering directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf'
[ 46%] Building CXX object src/CMakeFiles/rapmap.dir/RapMap.cpp.o
[ 50%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapUtils.cpp.o
cd /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/digestpp -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external/cereal/include -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMap.cpp.o -MF CMakeFiles/rapmap.dir/RapMap.cpp.o.d -o CMakeFiles/rapmap.dir/RapMap.cpp.o -c /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/RapMap.cpp
cd /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/digestpp -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external/cereal/include -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapUtils.cpp.o -MF CMakeFiles/rapmap.dir/RapMapUtils.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapUtils.cpp.o -c /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/RapMapUtils.cpp
[ 57%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o
[ 57%] Building CXX object src/CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o
cd /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/digestpp -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external/cereal/include -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o -MF CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o -c /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp
cd /<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/digestpp -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external/cereal/include -I/<<BUILDDIR>>/rapmap-0.15.0+dfsg/external/install/include -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/rapmap-0.15.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -pthread -funroll-loops -fPIC -fomit-frame-pointer -O4 -DHAVE_ANSI_TERM -Wall -Wno-unused-function -Wno-unused-local-typedef -std=c++14 -static-libstdc++ -Wno-unknown-pragmas -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -std=c++14 -MD -MT src/CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o -MF CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o.d -o CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o -c /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp
In file included from /<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/BooMap.hpp:4,
from /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/RapMapUtils.cpp:32:
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/BooPHF.hpp: In function 'uint64_t boomphf::fastrange64(uint64_t, uint64_t)':
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/BooPHF.hpp:818:23: error: '__uint128_t' was not declared in this scope; did you mean '__uint32_t'?
818 | return (uint64_t)(((__uint128_t)word * (__uint128_t)p) >> 64);
| ^~~~~~~~~~~
| __uint32_t
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/BooPHF.hpp:818:35: error: expected ')' before 'word'
818 | return (uint64_t)(((__uint128_t)word * (__uint128_t)p) >> 64);
| ~ ^~~~
| )
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/BooPHF.hpp:818:64: error: expected ')' before ';' token
818 | return (uint64_t)(((__uint128_t)word * (__uint128_t)p) >> 64);
| ~ ^
| )
In file included from /<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/BooMap.hpp:4,
from /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/RapMapSAIndexer.cpp:51:
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/BooPHF.hpp: In function 'uint64_t boomphf::fastrange64(uint64_t, uint64_t)':
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/BooPHF.hpp:818:23: error: '__uint128_t' was not declared in this scope; did you mean '__uint32_t'?
818 | return (uint64_t)(((__uint128_t)word * (__uint128_t)p) >> 64);
| ^~~~~~~~~~~
| __uint32_t
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/BooPHF.hpp:818:35: error: expected ')' before 'word'
818 | return (uint64_t)(((__uint128_t)word * (__uint128_t)p) >> 64);
| ~ ^~~~
| )
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/BooPHF.hpp:818:64: error: expected ')' before ';' token
818 | return (uint64_t)(((__uint128_t)word * (__uint128_t)p) >> 64);
| ~ ^
| )
In file included from /<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/zstr/zstr.hpp:16,
from /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:62:
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/zstr/strict_fstream.hpp: In static member function 'static void strict_fstream::detail::static_method_holder::check_peek(std::istream*, const string&, std::ios_base::openmode)':
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/zstr/strict_fstream.hpp:128:39: warning: catching polymorphic type 'class std::ios_base::failure' by value [-Wcatch-value=]
128 | catch (std::ios_base::failure e) {}
| ^
In file included from /<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/BooMap.hpp:4,
from /<<BUILDDIR>>/rapmap-0.15.0+dfsg/src/RapMapSAMapper.cpp:70:
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/BooPHF.hpp: In function 'uint64_t boomphf::fastrange64(uint64_t, uint64_t)':
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/BooPHF.hpp:818:23: error: '__uint128_t' was not declared in this scope; did you mean '__uint32_t'?
818 | return (uint64_t)(((__uint128_t)word * (__uint128_t)p) >> 64);
| ^~~~~~~~~~~
| __uint32_t
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/BooPHF.hpp:818:35: error: expected ')' before 'word'
818 | return (uint64_t)(((__uint128_t)word * (__uint128_t)p) >> 64);
| ~ ^~~~
| )
/<<BUILDDIR>>/rapmap-0.15.0+dfsg/include/BooPHF.hpp:818:64: error: expected ')' before ';' token
818 | return (uint64_t)(((__uint128_t)word * (__uint128_t)p) >> 64);
| ~ ^
| )
At global scope:
cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics
make[4]: *** [src/CMakeFiles/rapmap.dir/build.make:107: src/CMakeFiles/rapmap.dir/RapMapUtils.cpp.o] Error 1
make[4]: *** Waiting for unfinished jobs....
At global scope:
cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics
make[4]: *** [src/CMakeFiles/rapmap.dir/build.make:93: src/CMakeFiles/rapmap.dir/RapMapSAIndexer.cpp.o] Error 1
At global scope:
cc1plus: note: unrecognized command-line option '-Wno-unused-local-typedef' may have been intended to silence earlier diagnostics
make[4]: *** [src/CMakeFiles/rapmap.dir/build.make:121: src/CMakeFiles/rapmap.dir/RapMapSAMapper.cpp.o] Error 1
make[4]: Leaving directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: *** [CMakeFiles/Makefile2:213: src/CMakeFiles/rapmap.dir/all] Error 2
make[3]: Leaving directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf'
make[2]: *** [Makefile:169: all] Error 2
make[2]: Leaving directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg/obj-arm-linux-gnueabihf'
dh_auto_build: error: cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2
make[1]: *** [debian/rules:22: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<BUILDDIR>>/rapmap-0.15.0+dfsg'
make: *** [debian/rules:16: binary-arch] Error 2
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2021-10-17T09:37:51Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 109
Distribution: bookworm-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 637
Job: rapmap_0.15.0+dfsg-2
Machine Architecture: armhf
Package: rapmap
Package-Time: 794
Source-Version: 0.15.0+dfsg-2
Space: 0
Status: failed
Version: 0.15.0+dfsg-2
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Finished at 2021-10-17T09:37:51Z
Build needed 00:00:00, 0k disc space