r-cran-seurat →
4.3.0-1 →
armhf → 2022-12-17 17:46:07
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| r-cran-seurat 4.3.0-1 (armhf) Sat, 17 Dec 2022 16:55:10 +0000 |
+==============================================================================+
Package: r-cran-seurat
Version: 4.3.0-1
Source Version: 4.3.0-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-f5ff92f2-5df7-4e95-857e-201f88c2df0c' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-cran-seurat-Ww18nU/resolver-XRoxha' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.5 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.3 MB]
Fetched 27.8 MB in 11s (2597 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-seurat' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-seurat.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-seurat.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1504 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-cran-seurat 4.3.0-1 (dsc) [2930 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-cran-seurat 4.3.0-1 (tar) [1497 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-cran-seurat 4.3.0-1 (diff) [4360 B]
Fetched 1504 kB in 0s (5650 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-seurat-Ww18nU/r-cran-seurat-4.3.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-seurat-Ww18nU' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-cluster, r-cran-cowplot, r-cran-fitdistrplus, r-cran-future, r-cran-future.apply, r-cran-ggplot2 (>= 3.3.0), r-cran-ggrepel, r-cran-ggridges, r-cran-httr, r-cran-ica, r-cran-igraph, r-cran-irlba, r-cran-jsonlite, r-cran-kernsmooth, r-cran-leiden, r-cran-lmtest, r-cran-mass, r-cran-matrix (>= 1.5-0), r-cran-matrixstats, r-cran-miniui, r-cran-patchwork, r-cran-pbapply, r-cran-plotly (>= 4.9.0), r-cran-png, r-cran-progressr, r-cran-rann, r-cran-rcolorbrewer, r-cran-rcpp (>= 1.0.7), r-cran-rcppannoy (>= 0.0.18), r-cran-reticulate, r-cran-rlang, r-cran-rocr, r-cran-rtsne, r-cran-scales, r-cran-scattermore, r-cran-sctransform (>= 0.3.5), r-cran-seuratobject (>= 4.1.3), r-cran-shiny, r-cran-spatstat.explore, r-cran-spatstat.geom, r-cran-tibble, r-cran-uwot (>= 0.1.14), r-cran-rcppeigen, r-cran-rcppprogress, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-cluster, r-cran-cowplot, r-cran-fitdistrplus, r-cran-future, r-cran-future.apply, r-cran-ggplot2 (>= 3.3.0), r-cran-ggrepel, r-cran-ggridges, r-cran-httr, r-cran-ica, r-cran-igraph, r-cran-irlba, r-cran-jsonlite, r-cran-kernsmooth, r-cran-leiden, r-cran-lmtest, r-cran-mass, r-cran-matrix (>= 1.5-0), r-cran-matrixstats, r-cran-miniui, r-cran-patchwork, r-cran-pbapply, r-cran-plotly (>= 4.9.0), r-cran-png, r-cran-progressr, r-cran-rann, r-cran-rcolorbrewer, r-cran-rcpp (>= 1.0.7), r-cran-rcppannoy (>= 0.0.18), r-cran-reticulate, r-cran-rlang, r-cran-rocr, r-cran-rtsne, r-cran-scales, r-cran-scattermore, r-cran-sctransform (>= 0.3.5), r-cran-seuratobject (>= 4.1.3), r-cran-shiny, r-cran-spatstat.explore, r-cran-spatstat.geom, r-cran-tibble, r-cran-uwot (>= 0.1.14), r-cran-rcppeigen, r-cran-rcppprogress, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [963 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [678 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [766 B]
Fetched 2407 B in 0s (64.3 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap libperl5.34 perl-modules-5.34
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils bsdutils
ca-certificates cpp-12 dctrl-tools debhelper dh-autoreconf dh-r
dh-strip-nondeterminism dwz file fontconfig fontconfig-config
fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings g++-12
gcc-12 gcc-12-base gettext gettext-base gfortran gfortran-12 groff-base
icu-devtools intltool-debian javascript-common libalgorithm-c3-perl
libarchive-zip-perl libasan8 libatomic1 libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libblkid1 libboost-dev
libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libcc1-0
libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl
libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl
libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgcc-12-dev libgcc-s1 libgfortran-12-dev
libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js
libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js
libjs-jquery-ui libjs-json libjs-microplugin.js libjs-popper.js
libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3
liblerc4 liblwp-mediatypes-perl liblzma-dev liblzma5 libmagic-mgc libmagic1
libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmount1 libmpdec3 libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-8-0
libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libreadline-dev
libreadline8 libregexp-ipv6-perl librtmp1 libsm6 libsmartcols1 libssh2-1
libssl3 libstdc++-12-dev libstdc++6 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libubsan1 libuchardet0 liburi-perl libuuid1 libuv1 libvariable-magic-perl
libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db media-types
mount node-bootstrap-sass node-html5shiv node-normalize.css openssl
pkg-config pkgconf pkgconf-bin po-debconf python3 python3-minimal python3.10
python3.10-minimal r-base-core r-base-dev r-cran-abind r-cran-askpass
r-cran-base64enc r-cran-bh r-cran-bitops r-cran-bslib r-cran-cachem
r-cran-catools r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace
r-cran-colourpicker r-cran-commonmark r-cran-cowplot r-cran-cpp11
r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-deldir
r-cran-digest r-cran-dplyr r-cran-dqrng r-cran-ellipsis r-cran-fansi
r-cran-farver r-cran-fastmap r-cran-fitdistrplus r-cran-fnn
r-cran-fontawesome r-cran-fs r-cran-future r-cran-future.apply r-cran-gdata
r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-ggridges r-cran-globals
r-cran-glue r-cran-goftest r-cran-gplots r-cran-gridextra r-cran-gtable
r-cran-gtools r-cran-here r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv
r-cran-httr r-cran-ica r-cran-igraph r-cran-irlba r-cran-isoband
r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-labeling
r-cran-later r-cran-lattice r-cran-lazyeval r-cran-leiden r-cran-lifecycle
r-cran-listenv r-cran-littler r-cran-lmtest r-cran-magrittr r-cran-mass
r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime
r-cran-miniui r-cran-munsell r-cran-nlme r-cran-openssl r-cran-parallelly
r-cran-patchwork r-cran-pbapply r-cran-pillar r-cran-pkgconfig
r-cran-pkgkitten r-cran-plotly r-cran-plyr r-cran-png r-cran-polyclip
r-cran-progressr r-cran-promises r-cran-purrr r-cran-r6 r-cran-rann
r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy
r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcppprogress r-cran-rcpptoml
r-cran-reshape2 r-cran-reticulate r-cran-rlang r-cran-rocr r-cran-rprojroot
r-cran-rtsne r-cran-sass r-cran-scales r-cran-scattermore r-cran-sctransform
r-cran-seuratobject r-cran-shiny r-cran-shinyjs r-cran-sitmo
r-cran-sourcetools r-cran-sp r-cran-spatstat.data r-cran-spatstat.explore
r-cran-spatstat.geom r-cran-spatstat.random r-cran-spatstat.sparse
r-cran-spatstat.utils r-cran-stringi r-cran-stringr r-cran-survival
r-cran-sys r-cran-tensor r-cran-tibble r-cran-tidyr r-cran-tidyselect
r-cran-utf8 r-cran-uwot r-cran-vctrs r-cran-viridislite r-cran-withr
r-cran-xtable r-cran-yaml r-cran-zoo readline-common ucf unzip util-linux
util-linux-extra x11-common xauth xdg-utils xz-utils zip zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-12-locales cpp-12-doc
debtags dh-make postgresql-client-common gcc-12-doc gettext-doc
libasprintf-dev libgettextpo-dev gfortran-doc gfortran-12-doc
libcoarrays-dev groff apache2 | lighttpd | httpd liblapack-doc libboost-doc
libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev
libboost-container1.74-dev libboost-context1.74-dev
libboost-contract1.74-dev libboost-coroutine1.74-dev
libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-program-options1.74-dev libboost-python1.74-dev
libboost-random1.74-dev libboost-regex1.74-dev
libboost-serialization1.74-dev libboost-stacktrace1.74-dev
libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
low-memory-monitor icu-doc libjs-jquery-ui-docs liblzma-doc cryptsetup-bin
ncurses-doc libscalar-number-perl readline-doc libstdc++-12-doc tcl8.6 tk8.6
libtool-doc gcj-jdk libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev
m4-doc apparmor less www-browser nfs-common nodejs libmail-box-perl
python3-doc python3-tk python3-venv python3.10-venv python3.10-doc
binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-cran-rpart
r-cran-callr r-cran-covr r-cran-knitr r-cran-processx r-cran-ps
r-cran-rmarkdown r-cran-rstudioapi r-cran-whoami r-cran-kernlab
r-cran-mvtnorm r-cran-vcd r-cran-jpeg r-cran-viridis r-cran-testthat
r-cran-xml2 r-cran-cairo r-cran-forcats r-cran-gridgraphics r-cran-magick
r-cran-maps r-cran-ragg r-cran-venndiagram r-cran-bench r-cran-desc
r-cran-lobstr r-cran-spelling r-cran-bit64 r-cran-bit r-cran-r.utils
r-cran-xts r-cran-nanotime r-cran-unitizer r-cran-hmisc r-cran-r.rsp
r-cran-markdown r-cran-dbi r-cran-rsqlite r-cran-waldo r-cran-profvis
r-cran-readr r-cran-uuid r-cran-ape r-bioc-graph r-cran-rgl r-cran-sf
r-cran-devtools r-cran-network r-cran-remotes r-cran-lintr r-cran-tidyverse
r-cran-getopt r-cran-r.devices r-cran-formattable r-cran-palmerpenguins
r-cran-units r-cran-vdiffr r-cran-ggally r-cran-broom r-cran-webshot
r-cran-dendextend r-cran-irdisplay r-cran-doparallel r-cran-foreach
r-cran-iterators r-cran-itertools r-cran-pbmcapply r-cran-progress
r-cran-furrr r-cran-roxygen2 r-cran-inline r-cran-tinytest r-cran-usethis
r-cran-dichromat r-cran-rgeos r-cran-rgdal r-cran-gstat r-cran-maptools
r-cran-spatstat.linnet r-cran-sm r-cran-gsl r-cran-locfit r-cran-spatial
r-cran-spatstat r-cran-randomfields r-cran-randomfieldsutils r-cran-blob
r-cran-brio r-cran-evaluate r-cran-hms r-cran-pkgbuild r-cran-pkgload
r-cran-rspectra r-cran-pkgdown r-cran-zeallot r-cran-plm r-cran-runit
dosfstools kbd util-linux-locales
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs node-jquery
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
uuid-runtime libmail-sendmail-perl r-recommended r-doc-html r-cran-testthat
r-cran-rmarkdown r-cran-thematic r-cran-knitr r-cran-mockery r-cran-vdiffr
r-cran-decor r-cran-brio r-cran-progress r-cran-webutils r-cran-bench
r-cran-broom r-cran-callr r-cran-covr r-cran-dbi r-cran-dbplyr r-cran-lobstr
r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite libpcg-cpp-dev
r-cran-rgenoud r-cran-actuar r-cran-rsvg r-cran-pkgload r-cran-ragg
r-cran-hexbin r-cran-hmisc r-cran-interp r-cran-mapproj r-cran-maps
r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-rpart r-cran-sf
r-cran-svglite r-cran-xml2 r-cran-devtools r-cran-ggbeeswarm r-cran-readr
r-cran-markdown r-cran-runit r-cran-sodium r-cran-gridgraphics
r-cran-lubridate r-cran-ggthemes r-cran-rsclient r-cran-rversions
r-cran-domc r-cran-mockr r-cran-bit64 r-cran-hms r-cran-dygraphs
r-cran-formattable r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome
fonts-glyphicons-halflings gettext gettext-base gfortran gfortran-12
groff-base icu-devtools intltool-debian javascript-common
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev
libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
libjs-highlight.js libjs-jquery libjs-jquery-datatables
libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js
libjs-popper.js libjs-sifter.js libjs-twitter-bootstrap-datepicker
liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev
libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmpdec3 libmro-compat-perl libnamespace-clean-perl libncurses-dev
libncurses5-dev libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16
libpsl5 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib
libreadline-dev libregexp-ipv6-perl librtmp1 libsm6 libssh2-1
libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
libtry-tiny-perl libuchardet0 liburi-perl libuv1 libvariable-magic-perl
libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db media-types
node-bootstrap-sass node-html5shiv node-normalize.css openssl pkg-config
pkgconf pkgconf-bin po-debconf python3 python3-minimal python3.10
python3.10-minimal r-base-core r-base-dev r-cran-abind r-cran-askpass
r-cran-base64enc r-cran-bh r-cran-bitops r-cran-bslib r-cran-cachem
r-cran-catools r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace
r-cran-colourpicker r-cran-commonmark r-cran-cowplot r-cran-cpp11
r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-deldir
r-cran-digest r-cran-dplyr r-cran-dqrng r-cran-ellipsis r-cran-fansi
r-cran-farver r-cran-fastmap r-cran-fitdistrplus r-cran-fnn
r-cran-fontawesome r-cran-fs r-cran-future r-cran-future.apply r-cran-gdata
r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-ggridges r-cran-globals
r-cran-glue r-cran-goftest r-cran-gplots r-cran-gridextra r-cran-gtable
r-cran-gtools r-cran-here r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv
r-cran-httr r-cran-ica r-cran-igraph r-cran-irlba r-cran-isoband
r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-labeling
r-cran-later r-cran-lattice r-cran-lazyeval r-cran-leiden r-cran-lifecycle
r-cran-listenv r-cran-littler r-cran-lmtest r-cran-magrittr r-cran-mass
r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime
r-cran-miniui r-cran-munsell r-cran-nlme r-cran-openssl r-cran-parallelly
r-cran-patchwork r-cran-pbapply r-cran-pillar r-cran-pkgconfig
r-cran-pkgkitten r-cran-plotly r-cran-plyr r-cran-png r-cran-polyclip
r-cran-progressr r-cran-promises r-cran-purrr r-cran-r6 r-cran-rann
r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy
r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcppprogress r-cran-rcpptoml
r-cran-reshape2 r-cran-reticulate r-cran-rlang r-cran-rocr r-cran-rprojroot
r-cran-rtsne r-cran-sass r-cran-scales r-cran-scattermore r-cran-sctransform
r-cran-seuratobject r-cran-shiny r-cran-shinyjs r-cran-sitmo
r-cran-sourcetools r-cran-sp r-cran-spatstat.data r-cran-spatstat.explore
r-cran-spatstat.geom r-cran-spatstat.random r-cran-spatstat.sparse
r-cran-spatstat.utils r-cran-stringi r-cran-stringr r-cran-survival
r-cran-sys r-cran-tensor r-cran-tibble r-cran-tidyr r-cran-tidyselect
r-cran-utf8 r-cran-uwot r-cran-vctrs r-cran-viridislite r-cran-withr
r-cran-xtable r-cran-yaml r-cran-zoo sbuild-build-depends-main-dummy ucf
unzip x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
bsdutils cpp-12 g++-12 gcc-12 gcc-12-base libasan8 libatomic1 libblkid1
libcc1-0 libgcc-12-dev libgcc-s1 libgomp1 liblzma5 libmount1 libpcre2-8-0
libreadline8 libsmartcols1 libssl3 libstdc++-12-dev libstdc++6 libubsan1
libuuid1 mount readline-common util-linux util-linux-extra xz-utils zlib1g
28 upgraded, 344 newly installed, 0 to remove and 59 not upgraded.
Need to get 250 MB of archives.
After this operation, 650 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1180 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdutils armhf 1:2.38.1-4 [83.9 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38.1-4 [91.6 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf util-linux-extra armhf 2.38.1-4 [98.1 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf util-linux armhf 2.38.1-4 [1062 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf mount armhf 2.38.1-4 [126 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 12.2.0-9+rpi1 [32.2 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 12.2.0-9+rpi1 [95.4 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 12.2.0-9+rpi1 [8224 B]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libasan8 armhf 12.2.0-9+rpi1 [2089 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 12.2.0-9+rpi1 [861 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12.2.0-9+rpi1 [37.2 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12.2.0-9+rpi1 [504 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf g++-12 armhf 12.2.0-9+rpi1 [7913 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-12-dev armhf 12.2.0-9+rpi1 [2025 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libgcc-12-dev armhf 12.2.0-9+rpi1 [725 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf gcc-12 armhf 12.2.0-9+rpi1 [14.2 MB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf cpp-12 armhf 12.2.0-9+rpi1 [7156 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 12.2.0-9+rpi1 [36.1 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf zlib1g armhf 1:1.2.13.dfsg-1 [73.5 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libssl3 armhf 3.0.7-1 [1614 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-minimal armhf 3.10.9-1 [769 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf python3.10-minimal armhf 3.10.9-1 [1477 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.10.6-1 [38.7 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf media-types all 8.0.0 [33.4 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf liblzma5 armhf 5.2.9-0.0 [178 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf readline-common all 8.2-1.2 [68.5 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libreadline8 armhf 8.2-1.2 [142 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libuuid1 armhf 2.38.1-4 [27.1 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libpython3.10-stdlib armhf 3.10.9-1 [1597 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf python3.10 armhf 3.10.9-1 [509 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.10.6-1 [21.7 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.10.6-1 [38.2 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libblkid1 armhf 2.38.1-4 [131 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libmount1 armhf 2.38.1-4 [144 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-8-0 armhf 10.40-3 [222 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.1-1 [1341 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.7-1 [1349 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf xz-utils armhf 5.2.9-0.0 [336 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.1 [80.8 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-2 [19.4 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-2 [8556 B]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [570 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.1 [941 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-27 [152 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.39-2 [258 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.13.1-4.5 [281 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.5 [330 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.1-2 [308 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.1-2 [704 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Ign:96 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-7 [482 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.51.0-1 [60.5 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.86.0-2 [322 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.1-2 [1214 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-9+rpi1 [238 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.5 [416 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 5.2.0-2+b1 [1832 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.10+ds-1 [214 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.10+ds-1 [68.6 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.10+ds-1 [58.3 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-1 [906 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2+b1 [237 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-6 [278 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.13-1 [680 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.2.2.20221110-1 [25.6 MB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-12-dev armhf 12.2.0-9+rpi1 [285 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf gfortran-12 armhf 12.2.0-9+rpi1 [7509 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:12.2.0-1+rpi1 [1432 B]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-2 [114 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.1-2 [2847 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3+20220423-2 [289 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3+20220423-2 [940 B]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.2-1.2 [122 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.40-3 [209 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.40-3 [199 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.40-3 [53.2 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.40-3 [644 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-14 [239 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-14 [232 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-14 [150 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-14 [569 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [901 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.39-2 [336 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.9-0.0 [234 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 72.1-3 [175 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 72.1-3 [9959 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1.1-1 [36.9 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libpkgconf3 armhf 1.8.0-11 [30.8 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf pkgconf-bin armhf 1.8.0-11 [27.6 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf pkgconf armhf 1.8.0-11 [25.6 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 1.8.0-11 [13.4 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.2.2.20221110-1 [4488 B]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.17-1 [90.4 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.44-1 [81.7 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-3 [9724 B]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-2+b1 [12.2 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-2 [16.8 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2200-1+b2 [794 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.86.0-2 [318 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-8+b1 [55.9 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [164 kB]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf javascript-common all 11+nmu1 [6260 B]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-17+b1 [9508 kB]
Get:214 http://172.17.4.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b4 [4824 B]
Get:215 http://172.17.4.1/private bookworm-staging/main armhf libjs-bootstrap all 3.4.1+dfsg-2 [173 kB]
Get:216 http://172.17.4.1/private bookworm-staging/main armhf libjs-popper.js all 1.16.1+ds-6 [52.4 kB]
Get:217 http://172.17.4.1/private bookworm-staging/main armhf libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB]
Get:218 http://172.17.4.1/private bookworm-staging/main armhf libjs-d3 all 3.5.17-4 [132 kB]
Get:219 http://172.17.4.1/private bookworm-staging/main armhf libjs-es5-shim all 4.6.7-2 [47.4 kB]
Get:220 http://172.17.4.1/private bookworm-staging/main armhf libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB]
Get:221 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:222 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB]
Get:223 http://172.17.4.1/private bookworm-staging/main armhf libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB]
Get:224 http://172.17.4.1/private bookworm-staging/main armhf libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B]
Get:225 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB]
Get:226 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:227 http://172.17.4.1/private bookworm-staging/main armhf libjs-json all 0~20210531+~1.0.8-1 [20.7 kB]
Get:228 http://172.17.4.1/private bookworm-staging/main armhf libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB]
Get:229 http://172.17.4.1/private bookworm-staging/main armhf libuv1 armhf 1.44.2-1+rpi1 [125 kB]
Get:230 http://172.17.4.1/private bookworm-staging/main armhf r-cran-littler armhf 0.3.17-1 [92.5 kB]
Get:231 http://172.17.4.1/private bookworm-staging/main armhf littler all 0.3.17-1 [14.4 kB]
Get:232 http://172.17.4.1/private bookworm-staging/main armhf node-bootstrap-sass all 3.4.3-2 [186 kB]
Get:233 http://172.17.4.1/private bookworm-staging/main armhf node-html5shiv all 3.7.3+dfsg-5 [13.2 kB]
Get:234 http://172.17.4.1/private bookworm-staging/main armhf node-normalize.css all 8.0.1-5 [12.7 kB]
Get:235 http://172.17.4.1/private bookworm-staging/main armhf r-cran-abind all 1.4-5-2 [64.6 kB]
Get:236 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sys armhf 3.4.1-1 [42.4 kB]
Get:237 http://172.17.4.1/private bookworm-staging/main armhf r-cran-askpass armhf 1.1-2 [22.3 kB]
Get:238 http://172.17.4.1/private bookworm-staging/main armhf r-cran-base64enc armhf 0.1-3-3 [27.8 kB]
Get:239 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bh all 1.74.0-2 [5524 B]
Get:240 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:241 http://172.17.4.1/private bookworm-staging/main armhf r-cran-digest armhf 0.6.30-2 [177 kB]
Get:242 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rlang armhf 1.0.6-1 [1621 kB]
Get:243 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fastmap armhf 1.1.0-1 [63.1 kB]
Get:244 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ellipsis armhf 0.3.2-2 [35.1 kB]
Get:245 http://172.17.4.1/private bookworm-staging/main armhf r-cran-htmltools armhf 0.5.4-1 [368 kB]
Get:246 http://172.17.4.1/private bookworm-staging/main armhf r-cran-jsonlite armhf 1.8.4+dfsg-1 [439 kB]
Get:247 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fs armhf 1.5.2+dfsg-1 [224 kB]
Get:248 http://172.17.4.1/private bookworm-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:249 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rappdirs armhf 0.3.3-1 [47.3 kB]
Get:250 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sass armhf 0.4.4+dfsg-1 [826 kB]
Get:251 http://172.17.4.1/private bookworm-staging/main armhf r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB]
Get:252 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cachem armhf 1.0.6-1 [70.5 kB]
Get:253 http://172.17.4.1/private bookworm-staging/main armhf r-cran-memoise all 2.0.1-1 [53.8 kB]
Get:254 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bslib all 0.4.1+dfsg-1 [3723 kB]
Get:255 http://172.17.4.1/private bookworm-staging/main armhf r-cran-catools armhf 1.18.2-1 [200 kB]
Get:256 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cli armhf 3.4.1-1 [1242 kB]
Get:257 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cluster armhf 2.1.4-1 [563 kB]
Get:258 http://172.17.4.1/private bookworm-staging/main armhf r-cran-codetools all 0.2-18-1 [91.8 kB]
Get:259 http://172.17.4.1/private bookworm-staging/main armhf r-cran-colorspace armhf 2.0-3+dfsg-1 [1697 kB]
Get:260 http://172.17.4.1/private bookworm-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:261 http://172.17.4.1/private bookworm-staging/main armhf r-cran-gtable all 0.3.1+dfsg-1 [165 kB]
Get:262 http://172.17.4.1/private bookworm-staging/main armhf r-cran-isoband armhf 0.2.6-1 [1759 kB]
Get:263 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mass armhf 7.3-58.1-1 [1126 kB]
Get:264 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-45-3 [1176 kB]
Get:265 http://172.17.4.1/private bookworm-staging/main armhf r-cran-nlme armhf 3.1.160-1 [2241 kB]
Get:266 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.5-1-1 [3685 kB]
Get:267 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mgcv armhf 1.8-41-1 [3132 kB]
Get:268 http://172.17.4.1/private bookworm-staging/main armhf r-cran-farver armhf 2.1.1-1 [1390 kB]
Get:269 http://172.17.4.1/private bookworm-staging/main armhf r-cran-labeling all 0.4.2-1 [62.7 kB]
Get:270 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB]
Get:271 http://172.17.4.1/private bookworm-staging/main armhf r-cran-munsell all 0.5.0-2 [236 kB]
Get:272 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB]
Get:273 http://172.17.4.1/private bookworm-staging/main armhf r-cran-viridislite all 0.4.1-1 [1299 kB]
Get:274 http://172.17.4.1/private bookworm-staging/main armhf r-cran-scales all 1.2.1-1 [614 kB]
Get:275 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fansi armhf 1.0.3-1 [611 kB]
Get:276 http://172.17.4.1/private bookworm-staging/main armhf r-cran-magrittr armhf 2.0.3-1 [200 kB]
Get:277 http://172.17.4.1/private bookworm-staging/main armhf r-cran-utf8 armhf 1.2.2-1 [129 kB]
Get:278 http://172.17.4.1/private bookworm-staging/main armhf r-cran-vctrs armhf 0.5.1-1 [1318 kB]
Get:279 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pillar all 1.8.1+dfsg-1 [463 kB]
Get:280 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:281 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tibble armhf 3.1.8+dfsg-1 [516 kB]
Get:282 http://172.17.4.1/private bookworm-staging/main armhf r-cran-withr all 2.5.0-1 [236 kB]
Get:283 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ggplot2 all 3.3.6+dfsg-1 [3213 kB]
Get:284 http://172.17.4.1/private bookworm-staging/main armhf r-cran-yaml armhf 2.3.6-1 [92.2 kB]
Get:285 http://172.17.4.1/private bookworm-staging/main armhf r-cran-htmlwidgets all 1.5.4+dfsg-1 [124 kB]
Get:286 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get:287 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcpp armhf 1.0.9-1 [2036 kB]
Get:288 http://172.17.4.1/private bookworm-staging/main armhf r-cran-later armhf 1.3.0+dfsg-1 [108 kB]
Get:289 http://172.17.4.1/private bookworm-staging/main armhf r-cran-promises armhf 1.2.0.1+dfsg-1 [270 kB]
Get:290 http://172.17.4.1/private bookworm-staging/main armhf r-cran-httpuv armhf 1.6.6+dfsg-1 [442 kB]
Get:291 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mime armhf 0.12-1 [35.6 kB]
Get:292 http://172.17.4.1/private bookworm-staging/main armhf r-cran-xtable all 1:1.8-4-2 [689 kB]
Get:293 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fontawesome all 0.4.0-1 [1298 kB]
Get:294 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sourcetools armhf 0.1.7-3 [43.3 kB]
Get:295 http://172.17.4.1/private bookworm-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
Get:296 http://172.17.4.1/private bookworm-staging/main armhf r-cran-commonmark armhf 1.8.1-1 [97.6 kB]
Get:297 http://172.17.4.1/private bookworm-staging/main armhf r-cran-shiny all 1.7.3+dfsg-1 [2697 kB]
Get:298 http://172.17.4.1/private bookworm-staging/main armhf r-cran-miniui all 0.1.1.1-3 [35.9 kB]
Get:299 http://172.17.4.1/private bookworm-staging/main armhf r-cran-shinyjs all 2.1.0-1 [1009 kB]
Get:300 http://172.17.4.1/private bookworm-staging/main armhf r-cran-colourpicker all 1.2.0+dfsg-1 [1165 kB]
Get:301 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cowplot all 1.1.1+dfsg-1 [636 kB]
Get:302 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cpp11 all 0.4.3-1 [223 kB]
Get:303 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lazyeval armhf 0.2.2-1+b1 [141 kB]
Get:304 http://172.17.4.1/private bookworm-staging/main armhf r-cran-crosstalk all 1.2.0+dfsg-1 [171 kB]
Get:305 http://172.17.4.1/private bookworm-staging/main armhf r-cran-curl armhf 4.3.3+dfsg-1 [152 kB]
Get:306 http://172.17.4.1/private bookworm-staging/main armhf r-cran-data.table armhf 1.14.6+dfsg-1 [1688 kB]
Get:307 http://172.17.4.1/private bookworm-staging/main armhf r-cran-deldir armhf 1.0-6-1 [276 kB]
Get:308 http://172.17.4.1/private bookworm-staging/main armhf r-cran-generics all 0.1.3-1 [81.4 kB]
Get:309 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tidyselect armhf 1.2.0+dfsg-1 [222 kB]
Get:310 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dplyr armhf 1.0.10-1 [1230 kB]
Get:311 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sitmo armhf 2.0.2-1 [126 kB]
Get:312 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dqrng armhf 0.3.0+dfsg-1 [116 kB]
Get:313 http://172.17.4.1/private bookworm-staging/main armhf r-cran-survival armhf 3.4-0-1 [5788 kB]
Get:314 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fitdistrplus all 1.1-8-1 [2784 kB]
Get:315 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fnn armhf 1.1.3.1-1 [114 kB]
Get:316 http://172.17.4.1/private bookworm-staging/main armhf r-cran-globals all 0.16.2-1 [118 kB]
Get:317 http://172.17.4.1/private bookworm-staging/main armhf r-cran-listenv all 0.8.0+dfsg-1 [105 kB]
Get:318 http://172.17.4.1/private bookworm-staging/main armhf r-cran-parallelly all 1.32.1-1 [314 kB]
Get:319 http://172.17.4.1/private bookworm-staging/main armhf r-cran-future all 1.29.0+dfsg-1 [634 kB]
Get:320 http://172.17.4.1/private bookworm-staging/main armhf r-cran-future.apply all 1.10.0+dfsg-1 [165 kB]
Get:321 http://172.17.4.1/private bookworm-staging/main armhf r-cran-gtools armhf 3.9.4-1 [360 kB]
Get:322 http://172.17.4.1/private bookworm-staging/main armhf r-cran-gdata all 2.18.0.1-1 [1033 kB]
Get:323 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ggrepel armhf 0.9.2-1 [243 kB]
Get:324 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ggridges all 0.5.4-1 [2205 kB]
Get:325 http://172.17.4.1/private bookworm-staging/main armhf r-cran-goftest armhf 1.2-3-1 [59.1 kB]
Get:326 http://172.17.4.1/private bookworm-staging/main armhf r-cran-kernsmooth armhf 2.23-20-1 [90.5 kB]
Get:327 http://172.17.4.1/private bookworm-staging/main armhf r-cran-gplots all 3.1.3-1 [607 kB]
Get:328 http://172.17.4.1/private bookworm-staging/main armhf r-cran-gridextra all 2.3-3 [1024 kB]
Get:329 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rprojroot all 2.0.3-1 [119 kB]
Get:330 http://172.17.4.1/private bookworm-staging/main armhf r-cran-here all 1.0.1-2 [48.7 kB]
Get:331 http://172.17.4.1/private bookworm-staging/main armhf r-cran-openssl armhf 2.0.5+dfsg-1 [388 kB]
Get:332 http://172.17.4.1/private bookworm-staging/main armhf r-cran-httr all 1.4.4+dfsg-1 [467 kB]
Get:333 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ica all 1.0-3-1 [86.7 kB]
Get:334 http://172.17.4.1/private bookworm-staging/main armhf r-cran-igraph armhf 1.3.4-1 [3321 kB]
Get:335 http://172.17.4.1/private bookworm-staging/main armhf r-cran-irlba armhf 2.3.5.1-1 [293 kB]
Get:336 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcpptoml armhf 0.1.7-2 [148 kB]
Get:337 http://172.17.4.1/private bookworm-staging/main armhf r-cran-png armhf 0.1-8-1 [40.2 kB]
Get:338 http://172.17.4.1/private bookworm-staging/main armhf r-cran-reticulate armhf 1.26+dfsg-1 [1323 kB]
Get:339 http://172.17.4.1/private bookworm-staging/main armhf r-cran-leiden all 0.4.3+dfsg-1 [71.5 kB]
Get:340 http://172.17.4.1/private bookworm-staging/main armhf r-cran-zoo armhf 1.8-11-1 [987 kB]
Get:341 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lmtest armhf 0.9.40-1 [400 kB]
Get:342 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrixstats armhf 0.63.0-1 [453 kB]
Get:343 http://172.17.4.1/private bookworm-staging/main armhf r-cran-patchwork all 1.1.2-1 [3247 kB]
Get:344 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pbapply all 1.6-0-1 [83.3 kB]
Get:345 http://172.17.4.1/private bookworm-staging/main armhf r-cran-purrr armhf 0.3.5-1 [400 kB]
Get:346 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tidyr armhf 1.2.1-1 [854 kB]
Get:347 http://172.17.4.1/private bookworm-staging/main armhf r-cran-plotly all 4.10.0+dfsg-1 [3279 kB]
Get:348 http://172.17.4.1/private bookworm-staging/main armhf r-cran-plyr armhf 1.8.8-1 [831 kB]
Get:349 http://172.17.4.1/private bookworm-staging/main armhf r-cran-polyclip armhf 1.10-4-1 [103 kB]
Get:350 http://172.17.4.1/private bookworm-staging/main armhf r-cran-progressr all 0.11.0-1 [273 kB]
Get:351 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rann armhf 2.6.1-1+b1 [38.3 kB]
Get:352 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcppannoy armhf 0.0.20-1 [212 kB]
Get:353 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcpparmadillo armhf 0.11.4.2.1-1 [841 kB]
Get:354 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcppeigen armhf 0.3.3.9.3-1 [1164 kB]
Get:355 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcppprogress all 0.4.2-2 [21.8 kB]
Get:356 http://172.17.4.1/private bookworm-staging/main armhf r-cran-stringi armhf 1.7.8-1+b1 [837 kB]
Get:357 http://172.17.4.1/private bookworm-staging/main armhf r-cran-stringr all 1.4.1-1 [202 kB]
Get:358 http://172.17.4.1/private bookworm-staging/main armhf r-cran-reshape2 armhf 1.4.4-2 [110 kB]
Get:359 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rocr all 1.0-11-2 [446 kB]
Get:360 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rtsne armhf 0.16-1 [90.1 kB]
Get:361 http://172.17.4.1/private bookworm-staging/main armhf r-cran-scattermore armhf 0.8-1 [45.2 kB]
Get:362 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sctransform armhf 0.3.5-1 [479 kB]
Get:363 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sp armhf 1:1.5-1+dfsg-1 [1539 kB]
Get:364 http://172.17.4.1/private bookworm-staging/main armhf r-cran-seuratobject armhf 4.1.3-1 [1050 kB]
Get:365 http://172.17.4.1/private bookworm-staging/main armhf r-cran-spatstat.utils armhf 3.0-1-1 [360 kB]
Get:366 http://172.17.4.1/private bookworm-staging/main armhf r-cran-spatstat.data all 3.0-0-1 [4075 kB]
Get:367 http://172.17.4.1/private bookworm-staging/main armhf r-cran-spatstat.geom armhf 3.0-3-1 [3726 kB]
Get:368 http://172.17.4.1/private bookworm-staging/main armhf r-cran-spatstat.random armhf 3.0-1-1 [943 kB]
Get:369 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tensor all 1.5-4 [15.6 kB]
Get:370 http://172.17.4.1/private bookworm-staging/main armhf r-cran-spatstat.sparse armhf 3.0-0-1 [212 kB]
Get:371 http://172.17.4.1/private bookworm-staging/main armhf r-cran-spatstat.explore armhf 3.0-5-2 [3156 kB]
Get:372 http://172.17.4.1/private bookworm-staging/main armhf r-cran-uwot armhf 0.1.14-2 [538 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
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Setting up libcurl4:armhf (7.86.0-2) ...
Setting up libx11-6:armhf (2:1.8.1-2) ...
Setting up libharfbuzz0b:armhf (5.2.0-2+b1) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.988-1) ...
Setting up libpython3-stdlib:armhf (3.10.6-1) ...
Setting up libhttp-message-perl (6.44-1) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up python3.10 (3.10.9-1) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up libstdc++-12-dev:armhf (12.2.0-9+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-8+b1) ...
Setting up python3 (3.10.6-1) ...
Setting up libgfortran-12-dev:armhf (12.2.0-9+rpi1) ...
Setting up man-db (2.11.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gcc-12 (12.2.0-9+rpi1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1) ...
Setting up xauth (1:1.1.1-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up g++-12 (12.2.0-9+rpi1) ...
Setting up libboost1.74-dev:armhf (1.74.0-17+b1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up debhelper (13.11.1) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up gfortran-12 (12.2.0-9+rpi1) ...
Setting up libpackage-deprecationmanager-perl (0.17-2) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up libboost-dev:armhf (1.74.0.3+b4) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-cran-bh (1.74.0-2) ...
Setting up libmoose-perl:armhf (2.2200-1+b2) ...
Setting up gfortran (4:12.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Processing triggers for libc-bin (2.35-2+rpi1) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.13.1-4.5) ...
Setting up fontconfig (2.13.1-4.5) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.13-1) ...
Setting up libpango-1.0-0:armhf (1.50.10+ds-1) ...
Setting up libcairo2:armhf (1.16.0-7) ...
Setting up libpangoft2-1.0-0:armhf (1.50.10+ds-1) ...
Setting up libpangocairo-1.0-0:armhf (1.50.10+ds-1) ...
Setting up r-base-core (4.2.2.20221110-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.2-1) ...
Setting up r-cran-gtable (0.3.1+dfsg-1) ...
Setting up r-cran-labeling (0.4.2-1) ...
Setting up r-cran-rcppprogress (0.4.2-2) ...
Setting up r-cran-sourcetools (0.1.7-3) ...
Setting up r-cran-lattice (0.20-45-3) ...
Setting up r-cran-nlme (3.1.160-1) ...
Setting up r-cran-farver (2.1.1-1) ...
Setting up r-cran-pbapply (1.6-0-1) ...
Setting up r-cran-spatstat.utils (3.0-1-1) ...
Setting up r-cran-viridislite (0.4.1-1) ...
Setting up r-cran-cluster (2.1.4-1) ...
Setting up r-cran-tensor (1.5-4) ...
Setting up r-cran-lazyeval (0.2.2-1+b1) ...
Setting up r-cran-commonmark (1.8.1-1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.2-2) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-cran-rappdirs (0.3.3-1) ...
Setting up r-cran-littler (0.3.17-1) ...
Setting up r-cran-fs (1.5.2+dfsg-1) ...
Setting up r-cran-rcpp (1.0.9-1) ...
Setting up r-cran-curl (4.3.3+dfsg-1) ...
Setting up r-cran-codetools (0.2-18-1) ...
Setting up r-cran-rlang (1.0.6-1) ...
Setting up r-cran-matrixstats (0.63.0-1) ...
Setting up r-base-dev (4.2.2.20221110-1) ...
Setting up r-cran-listenv (0.8.0+dfsg-1) ...
Setting up littler (0.3.17-1) ...
Setting up r-cran-sys (3.4.1-1) ...
Setting up r-cran-withr (2.5.0-1) ...
Setting up r-cran-mime (0.12-1) ...
Setting up r-cran-generics (0.1.3-1) ...
Setting up r-cran-base64enc (0.1-3-3) ...
Setting up r-cran-abind (1.4-5-2) ...
Setting up r-cran-digest (0.6.30-2) ...
Setting up r-cran-yaml (2.3.6-1) ...
Setting up r-cran-ica (1.0-3-1) ...
Setting up r-cran-rann (2.6.1-1+b1) ...
Setting up r-cran-fansi (1.0.3-1) ...
Setting up r-cran-mass (7.3-58.1-1) ...
Setting up r-cran-gtools (3.9.4-1) ...
Setting up r-cran-data.table (1.14.6+dfsg-1) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-xtable (1:1.8-4-2) ...
Setting up r-cran-polyclip (1.10-4-1) ...
Setting up r-cran-cli (3.4.1-1) ...
Setting up r-cran-lifecycle (1.0.3+dfsg-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-cran-rprojroot (2.0.3-1) ...
Setting up r-cran-fnn (1.1.3.1-1) ...
Setting up r-cran-progressr (0.11.0-1) ...
Setting up r-cran-deldir (1.0-6-1) ...
Setting up r-cran-goftest (1.2-3-1) ...
Setting up r-cran-askpass (1.1-2) ...
Setting up r-cran-fastmap (1.1.0-1) ...
Setting up r-cran-png (0.1-8-1) ...
Setting up r-cran-jsonlite (1.8.4+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-sp (1:1.5-1+dfsg-1) ...
Setting up r-cran-utf8 (1.2.2-1) ...
Setting up r-cran-colorspace (2.0-3+dfsg-1) ...
Setting up r-cran-parallelly (1.32.1-1) ...
Setting up r-cran-stringi (1.7.8-1+b1) ...
Setting up r-cran-cpp11 (0.4.3-1) ...
Setting up r-cran-sitmo (2.0.2-1) ...
Setting up r-cran-plyr (1.8.8-1) ...
Setting up r-cran-rcolorbrewer (1.1-3-1) ...
Setting up r-cran-isoband (0.2.6-1) ...
Setting up r-cran-gridextra (2.3-3) ...
Setting up r-cran-purrr (0.3.5-1) ...
Setting up r-cran-zoo (1.8-11-1) ...
Setting up r-cran-later (1.3.0+dfsg-1) ...
Setting up r-cran-matrix (1.5-1-1) ...
Setting up r-cran-spatstat.sparse (3.0-0-1) ...
Setting up r-cran-here (1.0.1-2) ...
Setting up r-cran-irlba (2.3.5.1-1) ...
Setting up r-cran-kernsmooth (2.23-20-1) ...
Setting up r-cran-rcpptoml (0.1.7-2) ...
Setting up r-cran-mgcv (1.8-41-1) ...
Setting up r-cran-cachem (1.0.6-1) ...
Setting up r-cran-lmtest (0.9.40-1) ...
Setting up r-cran-catools (1.18.2-1) ...
Setting up r-cran-rtsne (0.16-1) ...
Setting up r-cran-rcpparmadillo (0.11.4.2.1-1) ...
Setting up r-cran-dqrng (0.3.0+dfsg-1) ...
Setting up dh-r (20210816) ...
Setting up r-cran-reticulate (1.26+dfsg-1) ...
Setting up r-cran-globals (0.16.2-1) ...
Setting up r-cran-gdata (2.18.0.1-1) ...
Setting up r-cran-vctrs (0.5.1-1) ...
Setting up r-cran-rcppeigen (0.3.3.9.3-1) ...
Setting up r-cran-pillar (1.8.1+dfsg-1) ...
Setting up r-cran-ellipsis (0.3.2-2) ...
Setting up r-cran-rcppannoy (0.0.20-1) ...
Setting up r-cran-openssl (2.0.5+dfsg-1) ...
Setting up r-cran-stringr (1.4.1-1) ...
Setting up r-cran-munsell (0.5.0-2) ...
Setting up r-cran-tibble (3.1.8+dfsg-1) ...
Setting up r-cran-survival (3.4-0-1) ...
Setting up r-cran-igraph (1.3.4-1) ...
Setting up r-cran-future (1.29.0+dfsg-1) ...
Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
Setting up r-cran-reshape2 (1.4.4-2) ...
Setting up r-cran-future.apply (1.10.0+dfsg-1) ...
Setting up r-cran-httr (1.4.4+dfsg-1) ...
Setting up r-cran-scales (1.2.1-1) ...
Setting up r-cran-memoise (2.0.1-1) ...
Setting up r-cran-promises (1.2.0.1+dfsg-1) ...
Setting up r-cran-spatstat.data (3.0-0-1) ...
Setting up r-cran-htmltools (0.5.4-1) ...
Setting up r-cran-seuratobject (4.1.3-1) ...
Setting up r-cran-spatstat.geom (3.0-3-1) ...
Setting up r-cran-sass (0.4.4+dfsg-1) ...
Setting up r-cran-dplyr (1.0.10-1) ...
Setting up r-cran-gplots (3.1.3-1) ...
Setting up r-cran-uwot (0.1.14-2) ...
Setting up r-cran-leiden (0.4.3+dfsg-1) ...
Setting up r-cran-rocr (1.0-11-2) ...
Setting up r-cran-fitdistrplus (1.1-8-1) ...
Setting up r-cran-ggplot2 (3.3.6+dfsg-1) ...
Setting up r-cran-scattermore (0.8-1) ...
Setting up r-cran-httpuv (1.6.6+dfsg-1) ...
Setting up r-cran-fontawesome (0.4.0-1) ...
Setting up r-cran-spatstat.random (3.0-1-1) ...
Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
Setting up r-cran-htmlwidgets (1.5.4+dfsg-1) ...
Setting up r-cran-bslib (0.4.1+dfsg-1) ...
Setting up r-cran-spatstat.explore (3.0-5-2) ...
Setting up r-cran-ggrepel (0.9.2-1) ...
Setting up r-cran-tidyr (1.2.1-1) ...
Setting up r-cran-ggridges (0.5.4-1) ...
Setting up r-cran-cowplot (1.1.1+dfsg-1) ...
Setting up r-cran-sctransform (0.3.5-1) ...
Setting up r-cran-patchwork (1.1.2-1) ...
Setting up r-cran-shiny (1.7.3+dfsg-1) ...
Setting up r-cran-shinyjs (2.1.0-1) ...
Setting up r-cran-miniui (0.1.1.1-3) ...
Setting up r-cran-crosstalk (1.2.0+dfsg-1) ...
Setting up r-cran-colourpicker (1.2.0+dfsg-1) ...
Setting up r-cran-plotly (4.10.0+dfsg-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.35-2+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-9+rpi1 gcc-12_12.2.0-9+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-9+rpi1 libstdc++6_12.2.0-9+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-9+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 dctrl-tools_2.24-3 debconf_1.5.79 debhelper_13.11.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig_2.13.1-4.5 fontconfig-config_2.13.1-4.5 fonts-dejavu-core_2.37-2 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1 fonts-glyphicons-halflings_1.009~3.4.1+dfsg-2 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-9+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-9+rpi1 gcc-12-base_12.2.0-9+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-10 gettext-base_0.21-10 gfortran_4:12.2.0-1+rpi1 gfortran-12_12.2.0-9+rpi1 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 grep_3.7-1 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23 icu-devtools_72.1-3 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20211215-1 javascript-common_11+nmu1 krb5-locales_1.20-1 libacl1_2.3.1-1 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.5.3 libarchive-zip-perl_1.68-1 libasan8_12.2.0-9+rpi1 libassuan0_2.5.5-4 libatomic1_12.2.0-9+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.39-6+rpi1 libblas-dev_3.10.1-2 libblas3_3.10.1-2 libblkid1_2.38.1-4 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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: r-cran-seurat
Binary: r-cran-seurat
Architecture: any
Version: 4.3.0-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Steffen Moeller <moeller@debian.org>
Homepage: https://cran.r-project.org/package=Seurat
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-cran-seurat
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-cran-seurat.git
Testsuite: autopkgtest, autopkgtest-pkg-r
Testsuite-Triggers: r-cran-hdf5r, r-cran-testthat
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-cluster, r-cran-cowplot, r-cran-fitdistrplus, r-cran-future, r-cran-future.apply, r-cran-ggplot2 (>= 3.3.0), r-cran-ggrepel, r-cran-ggridges, r-cran-httr, r-cran-ica, r-cran-igraph, r-cran-irlba, r-cran-jsonlite, r-cran-kernsmooth, r-cran-leiden, r-cran-lmtest, r-cran-mass, r-cran-matrix (>= 1.5-0), r-cran-matrixstats, r-cran-miniui, r-cran-patchwork, r-cran-pbapply, r-cran-plotly (>= 4.9.0), r-cran-png, r-cran-progressr, r-cran-rann, r-cran-rcolorbrewer, r-cran-rcpp (>= 1.0.7), r-cran-rcppannoy (>= 0.0.18), r-cran-reticulate, r-cran-rlang, r-cran-rocr, r-cran-rtsne, r-cran-scales, r-cran-scattermore, r-cran-sctransform (>= 0.3.5), r-cran-seuratobject (>= 4.1.3), r-cran-shiny, r-cran-spatstat.explore, r-cran-spatstat.geom, r-cran-tibble, r-cran-uwot (>= 0.1.14), r-cran-rcppeigen, r-cran-rcppprogress
Package-List:
r-cran-seurat deb gnu-r optional arch=any
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.wcBh6gD7/trustedkeys.kbx': General error
gpgv: Signature made Mon Dec 12 13:20:01 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./r-cran-seurat_4.3.0-1.dsc
dpkg-source: info: extracting r-cran-seurat in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-cran-seurat_4.3.0.orig.tar.gz
dpkg-source: info: unpacking r-cran-seurat_4.3.0-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
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XDG_SESSION_ID=c76430
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-cran-seurat
dpkg-buildpackage: info: source version 4.3.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-cran-seurat/ -a -O--buildsystem=R
I: R packages needed for DEP8: testthat, hdf5r
I: R Package: Seurat Version: 4.3.0
I: Building using R version 4.2.2.20221110-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Mon, 12 Dec 2022 14:12:20 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-seurat/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-seurat/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 12 Dec 2022 14:12:20 +0100'"
* installing *source* package ‘Seurat’ ...
** package ‘Seurat’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ModularityOptimizer.cpp -o ModularityOptimizer.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RModularityOptimizer.cpp -o RModularityOptimizer.o
In file included from /usr/include/c++/12/vector:70,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60,
from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:26,
from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25,
from RModularityOptimizer.cpp:9:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘Rcpp::IntegerVector RunModularityClusteringCpp(Eigen::SparseMatrix<double, 0, int>, int, double, int, int, int, int, bool, std::string)’ at RModularityOptimizer.cpp:79:33:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:188,
from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:26,
from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25,
from RcppExports.cpp:4:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function ‘SEXPREC* Rcpp::internal::primitive_range_wrap__impl__nocast(InputIterator, InputIterator, std::random_access_iterator_tag) [with InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; T = double]’:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double> >’ changed in GCC 7.1
112 | inline SEXP primitive_range_wrap__impl__nocast(InputIterator first, InputIterator last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double> >’ changed in GCC 7.1
In function ‘SEXPREC* Rcpp::internal::primitive_range_wrap__impl(InputIterator, InputIterator, Rcpp::traits::false_type) [with InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; T = double]’,
inlined from ‘SEXPREC* Rcpp::internal::range_wrap_dispatch___impl(InputIterator, InputIterator, Rcpp::traits::r_type_primitive_tag) [with InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; T = double]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:179:63,
inlined from ‘SEXPREC* Rcpp::internal::range_wrap_dispatch(InputIterator, InputIterator) [with InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; T = double]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:419:63,
inlined from ‘SEXPREC* Rcpp::internal::range_wrap(InputIterator, InputIterator) [with InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:429:153,
inlined from ‘SEXPREC* Rcpp::internal::wrap_range_sugar_expression(const T&, Rcpp::traits::false_type) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:544:23,
inlined from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_iterable__logical(const T&, Rcpp::traits::false_type) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:552:47,
inlined from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_iterable__matrix_interface(const T&, Rcpp::traits::false_type) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:559:59,
inlined from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_iterable(const T&, Rcpp::traits::true_type) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:661:68,
inlined from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown(const T&, Rcpp::traits::false_type) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:732:43,
inlined from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::false_type) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:770:41,
inlined from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:787:39,
inlined from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:807:52,
inlined from ‘SEXPREC* Rcpp::wrap(const T&) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38,
inlined from ‘SEXPREC* _Seurat_SNN_SmallestNonzero_Dist(SEXP, SEXP, SEXP, SEXP)’ at RcppExports.cpp:358:33:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double> >’ changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘SEXPREC* Rcpp::internal::primitive_range_wrap__impl(InputIterator, InputIterator, Rcpp::traits::false_type) [with InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; T = double]’,
inlined from ‘SEXPREC* Rcpp::internal::range_wrap_dispatch___impl(InputIterator, InputIterator, Rcpp::traits::r_type_primitive_tag) [with InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; T = double]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:179:63,
inlined from ‘SEXPREC* Rcpp::internal::range_wrap_dispatch(InputIterator, InputIterator) [with InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; T = double]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:419:63,
inlined from ‘SEXPREC* Rcpp::internal::range_wrap(InputIterator, InputIterator) [with InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:429:153,
inlined from ‘SEXPREC* Rcpp::internal::wrap_range_sugar_expression(const T&, Rcpp::traits::false_type) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:544:23,
inlined from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_iterable__logical(const T&, Rcpp::traits::false_type) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:552:47,
inlined from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_iterable__matrix_interface(const T&, Rcpp::traits::false_type) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:559:59,
inlined from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_iterable(const T&, Rcpp::traits::true_type) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:661:68,
inlined from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown(const T&, Rcpp::traits::false_type) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:732:43,
inlined from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::false_type) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:770:41,
inlined from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:787:39,
inlined from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:807:52,
inlined from ‘SEXPREC* Rcpp::wrap(const T&) [with T = std::vector<double>]’ at /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38,
inlined from ‘SEXPREC* _Seurat_ScoreHelper(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’ at RcppExports.cpp:309:33:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<const double*, std::vector<double> >’ changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c data_manipulation.cpp -o data_manipulation.o
In file included from /usr/include/c++/12/vector:70,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60,
from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:26,
from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25,
from data_manipulation.cpp:1:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘Rcpp::List GraphToNeighborHelper(Eigen::SparseMatrix<double, 0, int>)’ at data_manipulation.cpp:446:24:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘Rcpp::List GraphToNeighborHelper(Eigen::SparseMatrix<double, 0, int>)’ at data_manipulation.cpp:447:25:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fast_NN_dist.cpp -o fast_NN_dist.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c integration.cpp -o integration.o
In file included from /usr/include/c++/12/vector:70,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60,
from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:26,
from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25,
from integration.cpp:1:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Eigen::Triplet<double, int>}; _Tp = Eigen::Triplet<double>; _Alloc = std::allocator<Eigen::Triplet<double> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Triplet<double> >::iterator’ changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::vector<double> ScoreHelper(Eigen::SparseMatrix<double, 0, int>, Eigen::MatrixXd, Eigen::MatrixXd, Eigen::MatrixXd, int, bool, bool)’ at integration.cpp:117:24:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::vector<double> ScoreHelper(Eigen::SparseMatrix<double, 0, int>, Eigen::MatrixXd, Eigen::MatrixXd, Eigen::MatrixXd, int, bool, bool)’ at integration.cpp:131:27:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘std::vector<double> ScoreHelper(Eigen::SparseMatrix<double, 0, int>, Eigen::MatrixXd, Eigen::MatrixXd, Eigen::MatrixXd, int, bool, bool)’ at integration.cpp:163:21:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Triplet<double, int>}; _Tp = Eigen::Triplet<double>; _Alloc = std::allocator<Eigen::Triplet<double> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Eigen::Triplet<double>; _Alloc = std::allocator<Eigen::Triplet<double> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘Eigen::SparseMatrix<double, 0, int> FindWeightsC(Rcpp::NumericVector, Eigen::MatrixXd, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, Eigen::MatrixXd, Eigen::VectorXd, double, double, bool)’ at integration.cpp:50:30:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Triplet<double>*, std::vector<Eigen::Triplet<double> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c snn.cpp -o snn.o
In file included from /usr/include/c++/12/vector:70,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60,
from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:26,
from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25,
from snn.cpp:1:
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Eigen::Triplet<double, int>}; _Tp = Eigen::Triplet<double>; _Alloc = std::allocator<Eigen::Triplet<double> >]’:
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<Eigen::Triplet<double> >::iterator’ changed in GCC 7.1
In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Triplet<double, int>}; _Tp = Eigen::Triplet<double>; _Alloc = std::allocator<Eigen::Triplet<double> >]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Eigen::Triplet<double>; _Alloc = std::allocator<Eigen::Triplet<double> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from ‘Eigen::SparseMatrix<double, 0, int> ComputeSNN(Eigen::MatrixXd, double)’ at snn.cpp:22:28:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Triplet<double>*, std::vector<Eigen::Triplet<double> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::vector<double> SNN_SmallestNonzero_Dist(Eigen::SparseMatrix<double, 0, int>, Eigen::MatrixXd, int, std::vector<double>)’ at snn.cpp:94:24:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::vector<double> SNN_SmallestNonzero_Dist(Eigen::SparseMatrix<double, 0, int>, Eigen::MatrixXd, int, std::vector<double>)’ at snn.cpp:111:24:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::vector<double> SNN_SmallestNonzero_Dist(Eigen::SparseMatrix<double, 0, int>, Eigen::MatrixXd, int, std::vector<double>)’ at snn.cpp:123:22:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stats.cpp -o stats.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c valid_pointer.c -o valid_pointer.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o Seurat.so ModularityOptimizer.o RModularityOptimizer.o RcppExports.o data_manipulation.o fast_NN_dist.o integration.o snn.o stats.o valid_pointer.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-cran-seurat/usr/lib/R/site-library/00LOCK-r-cran-seurat-4.3.0/00new/Seurat/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Seurat)
rm -f /<<PKGBUILDDIR>>/debian/r-cran-seurat/usr/lib/R/site-library/Seurat/LICENSE
W: Ignoring specified R dependency: R (>= 4.0.0)
I: Using r-cran-testthat for Recommends:testthat
I: Using r-cran-hdf5r for Recommends:hdf5r
I: Using r-cran-ape for Suggests:ape
I: Using r-cran-rsvd for Suggests:rsvd
I: Using r-bioc-s4vectors for Suggests:S4Vectors
I: Using r-bioc-summarizedexperiment for Suggests:SummarizedExperiment
I: Using r-bioc-singlecellexperiment for Suggests:SingleCellExperiment
W: Cannot find a debian package for Suggests:MAST
I: Using r-bioc-deseq2 for Suggests:DESeq2
I: Using r-bioc-biocgenerics for Suggests:BiocGenerics
I: Using r-bioc-genomicranges for Suggests:GenomicRanges
I: Using r-bioc-genomeinfodb for Suggests:GenomeInfoDb
I: Using r-bioc-iranges for Suggests:IRanges
I: Using r-bioc-rtracklayer for Suggests:rtracklayer
W: Cannot find a debian package for Suggests:Rfast2
I: Using r-bioc-monocle for Suggests:monocle
I: Using r-bioc-biobase for Suggests:Biobase
I: Using r-cran-vgam for Suggests:VGAM
I: Using r-bioc-limma for Suggests:limma
I: Using r-cran-metap for Suggests:metap
W: Cannot find a debian package for Suggests:enrichR
I: Using r-cran-mixtools for Suggests:mixtools
I: Using r-cran-ggrastr for Suggests:ggrastr
I: Using r-cran-data.table for Suggests:data.table
I: Using r-cran-r.utils for Suggests:R.utils
I: Using r-cran-cluster for Imports:cluster
I: Using r-cran-cowplot for Imports:cowplot
I: Using r-cran-fitdistrplus for Imports:fitdistrplus
I: Using r-cran-future for Imports:future
I: Using r-cran-future.apply for Imports:future.apply
I: Using r-cran-ggplot2 for Imports:ggplot2 (>= 3.3.0)
I: Using r-cran-ggrepel for Imports:ggrepel
I: Using r-cran-ggridges for Imports:ggridges
I: Using r-cran-httr for Imports:httr
I: Using r-cran-ica for Imports:ica
I: Using r-cran-igraph for Imports:igraph
I: Using r-cran-irlba for Imports:irlba
I: Using r-cran-jsonlite for Imports:jsonlite
I: Using r-cran-kernsmooth for Imports:KernSmooth
I: Using r-cran-leiden for Imports:leiden (>= 0.3.1)
I: Using r-cran-lmtest for Imports:lmtest
I: Using r-cran-mass for Imports:MASS
I: Using r-cran-matrix for Imports:Matrix (>= 1.5-0)
I: Using r-cran-matrixstats for Imports:matrixStats
I: Using r-cran-miniui for Imports:miniUI
I: Using r-cran-patchwork for Imports:patchwork
I: Using r-cran-pbapply for Imports:pbapply
I: Using r-cran-plotly for Imports:plotly (>= 4.9.0)
I: Using r-cran-png for Imports:png
I: Using r-cran-progressr for Imports:progressr
I: Using r-cran-rann for Imports:RANN
I: Using r-cran-rcolorbrewer for Imports:RColorBrewer
I: Using r-cran-rcpp for Imports:Rcpp (>= 1.0.7)
I: Using r-cran-rcppannoy for Imports:RcppAnnoy (>= 0.0.18)
I: Using r-cran-reticulate for Imports:reticulate
I: Using r-cran-rlang for Imports:rlang
I: Using r-cran-rocr for Imports:ROCR
I: Using r-cran-rtsne for Imports:Rtsne
I: Using r-cran-scales for Imports:scales
I: Using r-cran-scattermore for Imports:scattermore (>= 0.7)
I: Using r-cran-sctransform for Imports:sctransform (>= 0.3.5)
I: Using r-cran-seuratobject for Imports:SeuratObject (>= 4.1.3)
I: Using r-cran-shiny for Imports:shiny
I: Using r-cran-spatstat.explore for Imports:spatstat.explore
I: Using r-cran-spatstat.geom for Imports:spatstat.geom
I: Using r-cran-tibble for Imports:tibble
I: Using r-cran-uwot for Imports:uwot (>= 0.1.14)
I: Using r-cran-rcpp for LinkingTo:Rcpp (>= 0.11.0)
I: Using r-cran-rcppeigen for LinkingTo:RcppEigen
I: Using r-cran-rcppprogress for LinkingTo:RcppProgress
I: Use r-cran-seurat as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-seurat-dbgsym' in '../r-cran-seurat-dbgsym_4.3.0-1_armhf.deb'.
dpkg-deb: building package 'r-cran-seurat' in '../r-cran-seurat_4.3.0-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-cran-seurat_4.3.0-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../r-cran-seurat_4.3.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-12-17T17:45:59Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-seurat_4.3.0-1_armhf.changes:
------------------------------------
Format: 1.8
Date: Mon, 12 Dec 2022 14:12:20 +0100
Source: r-cran-seurat
Binary: r-cran-seurat r-cran-seurat-dbgsym
Architecture: armhf
Version: 4.3.0-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-cran-seurat - Tools for Single Cell Genomics
Changes:
r-cran-seurat (4.3.0-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* dh-update-R to update Build-Depends (routine-update)
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Files:
506b99e85a8a863f90117922d93c5ddb 2847652 debug optional r-cran-seurat-dbgsym_4.3.0-1_armhf.deb
0781bebb45b30c6fe9f1ffaf90af3e63 15188 gnu-r optional r-cran-seurat_4.3.0-1_armhf.buildinfo
91fd0cde2fd163ae41d6a39f81a077ff 3037624 gnu-r optional r-cran-seurat_4.3.0-1_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: r-cran-seurat
Binary: r-cran-seurat r-cran-seurat-dbgsym
Architecture: armhf
Version: 4.3.0-1
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sat, 17 Dec 2022 17:45:57 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.71-2),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-10),
autotools-dev (= 20220109.1),
base-files (= 12.3+rpi1),
base-passwd (= 3.6.1),
bash (= 5.2~rc2-2),
binutils (= 2.39-6+rpi1),
binutils-arm-linux-gnueabihf (= 2.39-6+rpi1),
binutils-common (= 2.39-6+rpi1),
bsdextrautils (= 2.38.1-4),
bsdutils (= 1:2.38.1-4),
build-essential (= 12.9),
bzip2 (= 1.0.8-5+b2),
ca-certificates (= 20211016),
coreutils (= 9.1-1),
cpp (= 4:12.2.0-1+rpi1),
cpp-12 (= 12.2.0-9+rpi1),
dash (= 0.5.11+git20210903+057cd650a4ed-9),
dctrl-tools (= 2.24-3),
debconf (= 1.5.79),
debhelper (= 13.11.1),
debianutils (= 5.7-0.3),
dh-autoreconf (= 20),
dh-r (= 20210816),
dh-strip-nondeterminism (= 1.13.0-2),
diffutils (= 1:3.8-1),
dpkg (= 1.21.9+rpi1),
dpkg-dev (= 1.21.9+rpi1),
dwz (= 0.14+20220924-2),
file (= 1:5.41-4),
findutils (= 4.9.0-3),
fontconfig (= 2.13.1-4.5),
fontconfig-config (= 2.13.1-4.5),
fonts-dejavu-core (= 2.37-2),
fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-4.1),
fonts-glyphicons-halflings (= 1.009~3.4.1+dfsg-2),
g++ (= 4:12.2.0-1+rpi1),
g++-12 (= 12.2.0-9+rpi1),
gcc (= 4:12.2.0-1+rpi1),
gcc-12 (= 12.2.0-9+rpi1),
gcc-12-base (= 12.2.0-9+rpi1),
gettext (= 0.21-10),
gettext-base (= 0.21-10),
gfortran (= 4:12.2.0-1+rpi1),
gfortran-12 (= 12.2.0-9+rpi1),
grep (= 3.7-1),
groff-base (= 1.22.4-9),
gzip (= 1.12-1),
hostname (= 3.23),
icu-devtools (= 72.1-3),
init-system-helpers (= 1.64),
intltool-debian (= 0.35.0+20060710.6),
javascript-common (= 11+nmu1),
libacl1 (= 2.3.1-1),
libalgorithm-c3-perl (= 0.11-2),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 12.2.0-9+rpi1),
libatomic1 (= 12.2.0-9+rpi1),
libattr1 (= 1:2.5.1-1),
libaudit-common (= 1:3.0.7-1.1),
libaudit1 (= 1:3.0.7-1.1),
libb-hooks-endofscope-perl (= 0.26-1),
libb-hooks-op-check-perl (= 0.22-2+b1),
libbinutils (= 2.39-6+rpi1),
libblas-dev (= 3.10.1-2),
libblas3 (= 3.10.1-2),
libblkid1 (= 2.38.1-4),
libboost-dev (= 1.74.0.3+b4),
libboost1.74-dev (= 1.74.0-17+b1),
libbrotli1 (= 1.0.9-2+b2),
libbsd0 (= 0.11.7-1),
libbz2-1.0 (= 1.0.8-5+b2),
libbz2-dev (= 1.0.8-5+b2),
libc-bin (= 2.35-2+rpi1),
libc-dev-bin (= 2.35-2+rpi1),
libc6 (= 2.35-2+rpi1),
libc6-dev (= 2.35-2+rpi1),
libcairo2 (= 1.16.0-7),
libcap-ng0 (= 0.8.3-1),
libcap2 (= 1:2.44-1),
libcc1-0 (= 12.2.0-9+rpi1),
libclass-c3-perl (= 0.35-2),
libclass-load-perl (= 0.25-2),
libclass-load-xs-perl (= 0.10-2+b1),
libclone-perl (= 0.46-1),
libcom-err2 (= 1.46.6~rc1-1),
libcrypt-dev (= 1:4.4.28-2),
libcrypt1 (= 1:4.4.28-2),
libctf-nobfd0 (= 2.39-6+rpi1),
libctf0 (= 2.39-6+rpi1),
libcurl3-gnutls (= 7.86.0-2),
libcurl4 (= 7.86.0-2),
libdata-optlist-perl (= 0.112-1),
libdatrie1 (= 0.2.13-2+b2),
libdb5.3 (= 5.3.28+dfsg1-0.10),
libdebconfclient0 (= 0.264),
libdebhelper-perl (= 13.11.1),
libdeflate0 (= 1.14-1),
libdevel-callchecker-perl (= 0.008-2),
libdevel-globaldestruction-perl (= 0.14-4),
libdevel-overloadinfo-perl (= 0.007-1),
libdevel-stacktrace-perl (= 2.0400-2),
libdist-checkconflicts-perl (= 0.11-2),
libdpkg-perl (= 1.21.9+rpi1),
libdynaloader-functions-perl (= 0.003-3),
libelf1 (= 0.187-2+rpi2),
libencode-locale-perl (= 1.05-3),
libeval-closure-perl (= 0.14-3),
libexpat1 (= 2.5.0-1),
libffi8 (= 3.4.2-4),
libfile-stripnondeterminism-perl (= 1.13.0-2),
libfile-which-perl (= 1.27-2),
libfontconfig1 (= 2.13.1-4.5),
libfreetype6 (= 2.12.1+dfsg-3),
libfribidi0 (= 1.0.8-2.1),
libgcc-12-dev (= 12.2.0-9+rpi1),
libgcc-s1 (= 12.2.0-9+rpi1),
libgcrypt20 (= 1.10.1-2+b2),
libgdbm-compat4 (= 1.23-3),
libgdbm6 (= 1.23-3),
libgfortran-12-dev (= 12.2.0-9+rpi1),
libgfortran5 (= 12.2.0-9+rpi1),
libglib2.0-0 (= 2.74.1-2),
libgmp10 (= 2:6.2.1+dfsg1-1.1),
libgnutls30 (= 3.7.8-2),
libgomp1 (= 12.2.0-9+rpi1),
libgpg-error0 (= 1.45-2),
libgraphite2-3 (= 1.3.14-1),
libgssapi-krb5-2 (= 1.20-1),
libharfbuzz0b (= 5.2.0-2+b1),
libhogweed6 (= 3.8.1-2),
libhttp-date-perl (= 6.05-2),
libhttp-message-perl (= 6.44-1),
libice6 (= 2:1.0.10-1),
libicu-dev (= 72.1-3),
libicu72 (= 72.1-3),
libidn2-0 (= 2.3.3-1),
libio-html-perl (= 1.004-3),
libisl23 (= 0.25-1),
libjbig0 (= 2.1-6.1),
libjpeg-dev (= 1:2.1.2-1),
libjpeg62-turbo (= 1:2.1.2-1),
libjpeg62-turbo-dev (= 1:2.1.2-1),
libjs-bootstrap (= 3.4.1+dfsg-2),
libjs-bootstrap4 (= 4.6.1+dfsg1-4),
libjs-d3 (= 3.5.17-4),
libjs-es5-shim (= 4.6.7-2),
libjs-highlight.js (= 9.18.5+dfsg1-2),
libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
libjs-jquery-datatables (= 1.11.5+dfsg-2),
libjs-jquery-selectize.js (= 0.12.6+dfsg-1.1),
libjs-jquery-ui (= 1.13.2+dfsg-1),
libjs-json (= 0~20210531+~1.0.8-1),
libjs-microplugin.js (= 0.0.3+dfsg-1.1),
libjs-popper.js (= 1.16.1+ds-6),
libjs-sifter.js (= 0.6.0+dfsg-3),
libjs-twitter-bootstrap-datepicker (= 1.3.1+dfsg1-4.1),
libk5crypto3 (= 1.20-1),
libkeyutils1 (= 1.6.3-1),
libkrb5-3 (= 1.20-1),
libkrb5support0 (= 1.20-1),
liblapack-dev (= 3.10.1-2),
liblapack3 (= 3.10.1-2),
libldap-2.5-0 (= 2.5.13+dfsg-2+rpi1),
liblerc4 (= 4.0.0+ds-2),
liblwp-mediatypes-perl (= 6.04-2),
liblz4-1 (= 1.9.4-1+rpi1),
liblzma-dev (= 5.2.9-0.0),
liblzma5 (= 5.2.9-0.0),
libmagic-mgc (= 1:5.41-4),
libmagic1 (= 1:5.41-4),
libmd0 (= 1.0.4-2),
libmodule-implementation-perl (= 0.09-2),
libmodule-runtime-conflicts-perl (= 0.003-2),
libmodule-runtime-perl (= 0.016-2),
libmoose-perl (= 2.2200-1+b2),
libmount1 (= 2.38.1-4),
libmpc3 (= 1.2.1-2),
libmpdec3 (= 2.5.1-2+rpi1),
libmpfr6 (= 4.1.0-3),
libmro-compat-perl (= 0.15-2),
libnamespace-clean-perl (= 0.27-2),
libncurses-dev (= 6.3+20220423-2),
libncurses5-dev (= 6.3+20220423-2),
libncurses6 (= 6.3+20220423-2),
libncursesw6 (= 6.3+20220423-2),
libnettle8 (= 3.8.1-2),
libnghttp2-14 (= 1.51.0-1),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libp11-kit0 (= 0.24.1-1),
libpackage-deprecationmanager-perl (= 0.17-2),
libpackage-stash-perl (= 0.40-1),
libpackage-stash-xs-perl (= 0.30-1+b1),
libpam-modules (= 1.5.2-5),
libpam-modules-bin (= 1.5.2-5),
libpam-runtime (= 1.5.2-5),
libpam0g (= 1.5.2-5),
libpango-1.0-0 (= 1.50.10+ds-1),
libpangocairo-1.0-0 (= 1.50.10+ds-1),
libpangoft2-1.0-0 (= 1.50.10+ds-1),
libpaper-utils (= 1.1.28),
libpaper1 (= 1.1.28),
libparams-classify-perl (= 0.015-2+b1),
libparams-util-perl (= 1.102-2+b1),
libpcre16-3 (= 2:8.39-14),
libpcre2-16-0 (= 10.40-3),
libpcre2-32-0 (= 10.40-3),
libpcre2-8-0 (= 10.40-3),
libpcre2-dev (= 10.40-3),
libpcre2-posix3 (= 10.40-3),
libpcre3 (= 2:8.39-14),
libpcre3-dev (= 2:8.39-14),
libpcre32-3 (= 2:8.39-14),
libpcrecpp0v5 (= 2:8.39-14),
libperl5.36 (= 5.36.0-4),
libpipeline1 (= 1.5.7-1),
libpixman-1-0 (= 0.42.2-1),
libpkgconf3 (= 1.8.0-11),
libpng-dev (= 1.6.39-2),
libpng16-16 (= 1.6.39-2),
libpsl5 (= 0.21.0-1.2),
libpython3-stdlib (= 3.10.6-1),
libpython3.10-minimal (= 3.10.9-1),
libpython3.10-stdlib (= 3.10.9-1),
libreadline-dev (= 8.2-1.2),
libreadline8 (= 8.2-1.2),
libregexp-ipv6-perl (= 0.03-3),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.28+dfsg-8),
libsasl2-modules-db (= 2.1.28+dfsg-8),
libseccomp2 (= 2.5.4-1+rpi1),
libselinux1 (= 3.4-1),
libsm6 (= 2:1.2.3-1),
libsmartcols1 (= 2.38.1-4),
libsqlite3-0 (= 3.39.4-1),
libssh2-1 (= 1.10.0-3+b1),
libssl3 (= 3.0.7-1),
libstdc++-12-dev (= 12.2.0-9+rpi1),
libstdc++6 (= 12.2.0-9+rpi1),
libsub-exporter-perl (= 0.988-1),
libsub-exporter-progressive-perl (= 0.001013-3),
libsub-identify-perl (= 0.14-3),
libsub-install-perl (= 0.928-3),
libsub-name-perl (= 0.26-2+b1),
libsub-override-perl (= 0.09-4),
libswitch-perl (= 2.17-3),
libsystemd0 (= 251.5-1+rpi1),
libtasn1-6 (= 4.19.0-2),
libtcl8.6 (= 8.6.13+dfsg-1),
libthai-data (= 0.1.29-1),
libthai0 (= 0.1.29-1),
libtiff5 (= 4.4.0-6),
libtimedate-perl (= 2.3300-2),
libtinfo6 (= 6.3+20220423-2),
libtirpc-common (= 1.3.3+ds-1),
libtirpc-dev (= 1.3.3+ds-1),
libtirpc3 (= 1.3.3+ds-1),
libtk8.6 (= 8.6.13-1),
libtool (= 2.4.7-5),
libtry-tiny-perl (= 0.31-2),
libubsan1 (= 12.2.0-9+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 251.5-1+rpi1),
libunistring2 (= 1.0-2),
liburi-perl (= 5.17-1),
libuuid1 (= 2.38.1-4),
libuv1 (= 1.44.2-1+rpi1),
libvariable-magic-perl (= 0.63-1+b1),
libwebp7 (= 1.2.2-2+b1),
libwww-curl-perl (= 4.17-8+b1),
libwww-curl-simple-perl (= 0.100191-3),
libx11-6 (= 2:1.8.1-2),
libx11-data (= 2:1.8.1-2),
libxau6 (= 1:1.0.9-1),
libxcb-render0 (= 1.15-1),
libxcb-shm0 (= 1.15-1),
libxcb1 (= 1.15-1),
libxdmcp6 (= 1:1.1.2-3),
libxext6 (= 2:1.3.4-1),
libxft2 (= 2.3.6-1),
libxml2 (= 2.9.14+dfsg-1.1),
libxmuu1 (= 2:1.1.3-3),
libxrender1 (= 1:0.9.10-1.1),
libxss1 (= 1:1.2.3-1),
libxt6 (= 1:1.2.1-1),
libzstd1 (= 1.5.2+dfsg-1),
linux-libc-dev (= 5.19.6-1+rpi1),
littler (= 0.3.17-1),
login (= 1:4.12.3+dfsg1-1),
lsb-base (= 11.4+rpi1),
m4 (= 1.4.19-1),
make (= 4.3-4.1),
man-db (= 2.11.1-1),
mawk (= 1.3.4.20200120-3.1),
media-types (= 8.0.0),
ncurses-base (= 6.3+20220423-2),
ncurses-bin (= 6.3+20220423-2),
node-bootstrap-sass (= 3.4.3-2),
node-html5shiv (= 3.7.3+dfsg-5),
node-normalize.css (= 8.0.1-5),
openssl (= 3.0.7-1),
patch (= 2.7.6-7),
perl (= 5.36.0-4),
perl-base (= 5.36.0-4),
perl-modules-5.36 (= 5.36.0-4),
pkg-config (= 1.8.0-11),
pkgconf (= 1.8.0-11),
pkgconf-bin (= 1.8.0-11),
po-debconf (= 1.0.21+nmu1),
python3 (= 3.10.6-1),
python3-minimal (= 3.10.6-1),
python3.10 (= 3.10.9-1),
python3.10-minimal (= 3.10.9-1),
r-base-core (= 4.2.2.20221110-1),
r-base-dev (= 4.2.2.20221110-1),
r-cran-abind (= 1.4-5-2),
r-cran-askpass (= 1.1-2),
r-cran-base64enc (= 0.1-3-3),
r-cran-bh (= 1.74.0-2),
r-cran-bitops (= 1.0-7-1),
r-cran-bslib (= 0.4.1+dfsg-1),
r-cran-cachem (= 1.0.6-1),
r-cran-catools (= 1.18.2-1),
r-cran-cli (= 3.4.1-1),
r-cran-cluster (= 2.1.4-1),
r-cran-codetools (= 0.2-18-1),
r-cran-colorspace (= 2.0-3+dfsg-1),
r-cran-colourpicker (= 1.2.0+dfsg-1),
r-cran-commonmark (= 1.8.1-1),
r-cran-cowplot (= 1.1.1+dfsg-1),
r-cran-cpp11 (= 0.4.3-1),
r-cran-crayon (= 1.5.2-1),
r-cran-crosstalk (= 1.2.0+dfsg-1),
r-cran-curl (= 4.3.3+dfsg-1),
r-cran-data.table (= 1.14.6+dfsg-1),
r-cran-deldir (= 1.0-6-1),
r-cran-digest (= 0.6.30-2),
r-cran-dplyr (= 1.0.10-1),
r-cran-dqrng (= 0.3.0+dfsg-1),
r-cran-ellipsis (= 0.3.2-2),
r-cran-fansi (= 1.0.3-1),
r-cran-farver (= 2.1.1-1),
r-cran-fastmap (= 1.1.0-1),
r-cran-fitdistrplus (= 1.1-8-1),
r-cran-fnn (= 1.1.3.1-1),
r-cran-fontawesome (= 0.4.0-1),
r-cran-fs (= 1.5.2+dfsg-1),
r-cran-future (= 1.29.0+dfsg-1),
r-cran-future.apply (= 1.10.0+dfsg-1),
r-cran-gdata (= 2.18.0.1-1),
r-cran-generics (= 0.1.3-1),
r-cran-ggplot2 (= 3.3.6+dfsg-1),
r-cran-ggrepel (= 0.9.2-1),
r-cran-ggridges (= 0.5.4-1),
r-cran-globals (= 0.16.2-1),
r-cran-glue (= 1.6.2-1),
r-cran-goftest (= 1.2-3-1),
r-cran-gplots (= 3.1.3-1),
r-cran-gridextra (= 2.3-3),
r-cran-gtable (= 0.3.1+dfsg-1),
r-cran-gtools (= 3.9.4-1),
r-cran-here (= 1.0.1-2),
r-cran-htmltools (= 0.5.4-1),
r-cran-htmlwidgets (= 1.5.4+dfsg-1),
r-cran-httpuv (= 1.6.6+dfsg-1),
r-cran-httr (= 1.4.4+dfsg-1),
r-cran-ica (= 1.0-3-1),
r-cran-igraph (= 1.3.4-1),
r-cran-irlba (= 2.3.5.1-1),
r-cran-isoband (= 0.2.6-1),
r-cran-jquerylib (= 0.1.4+dfsg-4),
r-cran-jsonlite (= 1.8.4+dfsg-1),
r-cran-kernsmooth (= 2.23-20-1),
r-cran-labeling (= 0.4.2-1),
r-cran-later (= 1.3.0+dfsg-1),
r-cran-lattice (= 0.20-45-3),
r-cran-lazyeval (= 0.2.2-1+b1),
r-cran-leiden (= 0.4.3+dfsg-1),
r-cran-lifecycle (= 1.0.3+dfsg-1),
r-cran-listenv (= 0.8.0+dfsg-1),
r-cran-littler (= 0.3.17-1),
r-cran-lmtest (= 0.9.40-1),
r-cran-magrittr (= 2.0.3-1),
r-cran-mass (= 7.3-58.1-1),
r-cran-matrix (= 1.5-1-1),
r-cran-matrixstats (= 0.63.0-1),
r-cran-memoise (= 2.0.1-1),
r-cran-mgcv (= 1.8-41-1),
r-cran-mime (= 0.12-1),
r-cran-miniui (= 0.1.1.1-3),
r-cran-munsell (= 0.5.0-2),
r-cran-nlme (= 3.1.160-1),
r-cran-openssl (= 2.0.5+dfsg-1),
r-cran-parallelly (= 1.32.1-1),
r-cran-patchwork (= 1.1.2-1),
r-cran-pbapply (= 1.6-0-1),
r-cran-pillar (= 1.8.1+dfsg-1),
r-cran-pkgconfig (= 2.0.3-2),
r-cran-pkgkitten (= 0.2.2-2),
r-cran-plotly (= 4.10.0+dfsg-1),
r-cran-plyr (= 1.8.8-1),
r-cran-png (= 0.1-8-1),
r-cran-polyclip (= 1.10-4-1),
r-cran-progressr (= 0.11.0-1),
r-cran-promises (= 1.2.0.1+dfsg-1),
r-cran-purrr (= 0.3.5-1),
r-cran-r6 (= 2.5.1-1),
r-cran-rann (= 2.6.1-1+b1),
r-cran-rappdirs (= 0.3.3-1),
r-cran-rcolorbrewer (= 1.1-3-1),
r-cran-rcpp (= 1.0.9-1),
r-cran-rcppannoy (= 0.0.20-1),
r-cran-rcpparmadillo (= 0.11.4.2.1-1),
r-cran-rcppeigen (= 0.3.3.9.3-1),
r-cran-rcppprogress (= 0.4.2-2),
r-cran-rcpptoml (= 0.1.7-2),
r-cran-reshape2 (= 1.4.4-2),
r-cran-reticulate (= 1.26+dfsg-1),
r-cran-rlang (= 1.0.6-1),
r-cran-rocr (= 1.0-11-2),
r-cran-rprojroot (= 2.0.3-1),
r-cran-rtsne (= 0.16-1),
r-cran-sass (= 0.4.4+dfsg-1),
r-cran-scales (= 1.2.1-1),
r-cran-scattermore (= 0.8-1),
r-cran-sctransform (= 0.3.5-1),
r-cran-seuratobject (= 4.1.3-1),
r-cran-shiny (= 1.7.3+dfsg-1),
r-cran-shinyjs (= 2.1.0-1),
r-cran-sitmo (= 2.0.2-1),
r-cran-sourcetools (= 0.1.7-3),
r-cran-sp (= 1:1.5-1+dfsg-1),
r-cran-spatstat.data (= 3.0-0-1),
r-cran-spatstat.explore (= 3.0-5-2),
r-cran-spatstat.geom (= 3.0-3-1),
r-cran-spatstat.random (= 3.0-1-1),
r-cran-spatstat.sparse (= 3.0-0-1),
r-cran-spatstat.utils (= 3.0-1-1),
r-cran-stringi (= 1.7.8-1+b1),
r-cran-stringr (= 1.4.1-1),
r-cran-survival (= 3.4-0-1),
r-cran-sys (= 3.4.1-1),
r-cran-tensor (= 1.5-4),
r-cran-tibble (= 3.1.8+dfsg-1),
r-cran-tidyr (= 1.2.1-1),
r-cran-tidyselect (= 1.2.0+dfsg-1),
r-cran-utf8 (= 1.2.2-1),
r-cran-uwot (= 0.1.14-2),
r-cran-vctrs (= 0.5.1-1),
r-cran-viridislite (= 0.4.1-1),
r-cran-withr (= 2.5.0-1),
r-cran-xtable (= 1:1.8-4-2),
r-cran-yaml (= 2.3.6-1),
r-cran-zoo (= 1.8-11-1),
readline-common (= 8.2-1.2),
rpcsvc-proto (= 1.4.2-4),
sed (= 4.8-1),
sensible-utils (= 0.0.17),
sgml-base (= 1.31),
sysvinit-utils (= 3.05-6),
tar (= 1.34+dfsg-1),
tzdata (= 2022d-1),
ucf (= 3.0043),
unzip (= 6.0-27),
util-linux (= 2.38.1-4),
util-linux-extra (= 2.38.1-4),
x11-common (= 1:7.7+23),
xauth (= 1:1.1.1-1),
xdg-utils (= 1.1.3-4.1),
xz-utils (= 5.2.9-0.0),
zip (= 3.0-12),
zlib1g (= 1:1.2.13.dfsg-1),
zlib1g-dev (= 1:1.2.13.dfsg-1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1670850740"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-seurat-dbgsym_4.3.0-1_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 2847652 bytes: control archive=540 bytes.
389 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-seurat-dbgsym
Source: r-cran-seurat
Version: 4.3.0-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 2857
Depends: r-cran-seurat (= 4.3.0-1)
Section: debug
Priority: optional
Description: debug symbols for r-cran-seurat
Build-Ids: cbe9e91c622d6c648252acc77a6cf6f24cf1f4f5
drwxr-xr-x root/root 0 2022-12-12 13:12 ./
drwxr-xr-x root/root 0 2022-12-12 13:12 ./usr/
drwxr-xr-x root/root 0 2022-12-12 13:12 ./usr/lib/
drwxr-xr-x root/root 0 2022-12-12 13:12 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-12-12 13:12 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-12-12 13:12 ./usr/lib/debug/.build-id/cb/
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drwxr-xr-x root/root 0 2022-12-12 13:12 ./usr/share/
drwxr-xr-x root/root 0 2022-12-12 13:12 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-12-12 13:12 ./usr/share/doc/r-cran-seurat-dbgsym -> r-cran-seurat
r-cran-seurat_4.3.0-1_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 3037624 bytes: control archive=2884 bytes.
2149 bytes, 20 lines control
4851 bytes, 55 lines md5sums
Package: r-cran-seurat
Version: 4.3.0-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 3518
Depends: r-base-core (>= 4.2.2.20221110-1), r-api-4.0, r-cran-cluster, r-cran-cowplot, r-cran-fitdistrplus, r-cran-future, r-cran-future.apply, r-cran-ggplot2 (>= 3.3.0), r-cran-ggrepel, r-cran-ggridges, r-cran-httr, r-cran-ica, r-cran-igraph, r-cran-irlba, r-cran-jsonlite, r-cran-kernsmooth, r-cran-leiden (>= 0.3.1), r-cran-lmtest, r-cran-mass, r-cran-matrix (>= 1.5-0), r-cran-matrixstats, r-cran-miniui, r-cran-patchwork, r-cran-pbapply, r-cran-plotly (>= 4.9.0), r-cran-png, r-cran-progressr, r-cran-rann, r-cran-rcolorbrewer, r-cran-rcpp (>= 1.0.7), r-cran-rcppannoy (>= 0.0.18), r-cran-reticulate, r-cran-rlang, r-cran-rocr, r-cran-rtsne, r-cran-scales, r-cran-scattermore (>= 0.7), r-cran-sctransform (>= 0.3.5), r-cran-seuratobject (>= 4.1.3), r-cran-shiny, r-cran-spatstat.explore, r-cran-spatstat.geom, r-cran-tibble, r-cran-uwot (>= 0.1.14), r-cran-rcppeigen, r-cran-rcppprogress, libc6 (>= 2.32), libgcc-s1 (>= 3.5), libstdc++6 (>= 11)
Recommends: r-cran-testthat, r-cran-hdf5r
Suggests: r-cran-ape, r-cran-rsvd, r-bioc-s4vectors, r-bioc-summarizedexperiment, r-bioc-singlecellexperiment, r-bioc-deseq2, r-bioc-biocgenerics, r-bioc-genomicranges, r-bioc-genomeinfodb, r-bioc-iranges, r-bioc-rtracklayer, r-bioc-monocle, r-bioc-biobase, r-cran-vgam, r-bioc-limma, r-cran-metap, r-cran-mixtools, r-cran-ggrastr, r-cran-data.table, r-cran-r.utils
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=Seurat
Description: Tools for Single Cell Genomics
A toolkit for quality control, analysis, and exploration of single cell
RNA sequencing data. 'Seurat' aims to enable users to identify and
interpret sources of heterogeneity from single cell transcriptomic
measurements, and to integrate diverse types of single cell data. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015)
<doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017)
<doi:10.1101/164889> for more details.
drwxr-xr-x root/root 0 2022-12-12 13:12 ./
drwxr-xr-x root/root 0 2022-12-12 13:12 ./usr/
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-rw-r--r-- root/root 3954 2022-12-12 13:12 ./usr/lib/R/site-library/Seurat/CITATION
-rw-r--r-- root/root 5960 2022-12-12 13:12 ./usr/lib/R/site-library/Seurat/DESCRIPTION
-rw-r--r-- root/root 12771 2022-12-12 13:12 ./usr/lib/R/site-library/Seurat/INDEX
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-rw-r--r-- root/root 25760 2022-12-12 13:12 ./usr/lib/R/site-library/Seurat/NEWS.md
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-rw-r--r-- root/root 39888 2022-12-12 13:12 ./usr/lib/R/site-library/Seurat/extdata/pbmc_raw.txt
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Purging /<<BUILDDIR>>
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| Summary |
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Build Architecture: armhf
Build Type: any
Build-Space: 16140
Build-Time: 293
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 2720
Job: r-cran-seurat_4.3.0-1
Machine Architecture: armhf
Package: r-cran-seurat
Package-Time: 3049
Source-Version: 4.3.0-1
Space: 16140
Status: successful
Version: 4.3.0-1
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Finished at 2022-12-17T17:45:59Z
Build needed 00:50:49, 16140k disk space