Raspbian Package Auto-Building

Build log for r-cran-samr (3.0-1) on armhf

r-cran-samr3.0-1armhf → 2022-10-06 22:39:58

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01

+==============================================================================+
| r-cran-samr 3.0-1 (armhf)                    Thu, 06 Oct 2022 22:12:26 +0000 |
+==============================================================================+

Package: r-cran-samr
Version: 3.0-1
Source Version: 3.0-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/buster-staging-armhf-sbuild-914a9d28-024b-4060-992c-ca538dea4dee' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private buster-staging/main Sources [11.4 MB]
Get:3 http://172.17.4.1/private buster-staging/main armhf Packages [13.0 MB]
Fetched 24.4 MB in 26s (940 kB/s)
Reading package lists...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-cran-samr' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-samr.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-samr.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3783 kB of source archives.
Get:1 http://172.17.4.1/private buster-staging/main r-cran-samr 3.0-1 (dsc) [2098 B]
Get:2 http://172.17.4.1/private buster-staging/main r-cran-samr 3.0-1 (tar) [3779 kB]
Get:3 http://172.17.4.1/private buster-staging/main r-cran-samr 3.0-1 (diff) [1960 B]
Fetched 3783 kB in 0s (9742 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-samr-MhrGkF/r-cran-samr-3.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-samr-MhrGkF' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-eKHhwr/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-eKHhwr/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-eKHhwr/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-eKHhwr/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-eKHhwr/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-eKHhwr/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-eKHhwr/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-eKHhwr/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-eKHhwr/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2893 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-eKHhwr/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-eKHhwr/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates e2fsprogs-l10n libgpg-error-l10n libsasl2-modules openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 29 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-eKHhwr/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15737 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-impute, r-cran-matrixstats, r-cran-shiny, r-cran-shinyfiles, r-cran-openxlsx, r-cran-gsa
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-impute, r-cran-matrixstats, r-cran-shiny, r-cran-shinyfiles, r-cran-openxlsx, r-cran-gsa
dpkg-deb: building package 'sbuild-build-depends-r-cran-samr-dummy' in '/<<BUILDDIR>>/resolver-eKHhwr/apt_archive/sbuild-build-depends-r-cran-samr-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-r-cran-samr-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-eKHhwr/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-eKHhwr/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-eKHhwr/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-eKHhwr/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-eKHhwr/apt_archive ./ Sources [548 B]
Get:5 copy:/<<BUILDDIR>>/resolver-eKHhwr/apt_archive ./ Packages [628 B]
Fetched 2509 B in 1s (3351 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-eKHhwr/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-eKHhwr/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...

Install r-cran-samr build dependencies (apt-based resolver)
-----------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  e2fsprogs-l10n libgpg-error-l10n libsasl2-modules
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils bzip2 dctrl-tools
  debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
  fontconfig-config fonts-dejavu-core fonts-font-awesome
  fonts-glyphicons-halflings gettext gettext-base gfortran gfortran-8
  groff-base icu-devtools intltool-debian libarchive-zip-perl libblas-dev
  libblas3 libboost-atomic1.67.0 libbsd0 libbz2-1.0 libbz2-dev libcairo2
  libcroco3 libcurl4 libdatrie1 libelf1 libexpat1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5 libglib2.0-0
  libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu-dev libicu63
  libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-bootstrap
  libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
  libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
  libjs-microplugin.js libjs-sifter.js libjs-twitter-bootstrap-datepicker
  libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
  liblzma-dev liblzma5 libmagic-mgc libmagic1 libncurses-dev libncurses5-dev
  libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
  libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5
  libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1
  libsigsegv2 libsm6 libssh2-1 libswitch-perl libtcl8.6 libthai-data libthai0
  libtiff5 libtk8.6 libtool libuchardet0 libuv1 libwebp6 libx11-6 libx11-data
  libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
  libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db
  node-normalize.css pkg-config po-debconf r-base-core r-base-dev
  r-bioc-impute r-cran-assertthat r-cran-cli r-cran-crayon r-cran-digest
  r-cran-fansi r-cran-fs r-cran-gsa r-cran-htmltools r-cran-httpuv
  r-cran-jsonlite r-cran-later r-cran-littler r-cran-magrittr
  r-cran-matrixstats r-cran-mime r-cran-openxlsx r-cran-pillar
  r-cran-pkgconfig r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rcpp
  r-cran-rlang r-cran-shiny r-cran-shinyfiles r-cran-sourcetools r-cran-tibble
  r-cran-utf8 r-cran-xtable r-cran-zip ucf unzip x11-common xauth xdg-utils
  zip zlib1g zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation bzip2-doc debtags dh-make gettext-doc libasprintf-dev
  libgettextpo-dev gfortran-doc gfortran-8-doc libgfortran5-dbg
  libcoarrays-dev groff liblapack-doc krb5-doc krb5-user icu-doc
  libjs-jquery-ui-docs liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6
  libtool-doc gcj-jdk m4-doc apparmor less www-browser libjs-html5shiv nodejs
  libmail-box-perl ess r-doc-info | r-doc-pdf r-mathlib r-base-html
  texlive-base texlive-latex-base texlive-generic-recommended
  texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
  texlive-latex-recommended texlive-latex-extra texinfo r-cran-webshot
  r-cran-rstudioapi r-cran-knitr r-cran-rmarkdown r-cran-testthat r-cran-withr
  r-cran-markdown r-cran-httr r-cran-curl r-cran-plyr r-cran-getopt
  r-cran-base64enc r-cran-ggplot2 r-cran-future r-cran-scales r-cran-inline
  r-cran-cairo r-cran-spdep r-cran-plm r-cran-zoo r-cran-survival
Recommended packages:
  devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs javascript-common krb5-locales libpng-tools
  publicsuffix libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
  r-cran-testthat r-cran-withr r-cran-mockery r-cran-sp r-cran-runit
  r-cran-lubridate r-cran-data.table r-cran-rsqlite r-cran-knitr r-cran-dplyr
  r-cran-mockr libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
  x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
  dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
  fontconfig-config fonts-dejavu-core fonts-font-awesome
  fonts-glyphicons-halflings gettext gettext-base gfortran gfortran-8
  groff-base icu-devtools intltool-debian libarchive-zip-perl libblas-dev
  libblas3 libboost-atomic1.67.0 libbsd0 libbz2-dev libcairo2 libcroco3
  libcurl4 libdatrie1 libelf1 libexpat1 libfile-stripnondeterminism-perl
  libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-8-dev
  libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b
  libice6 libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg62-turbo
  libjpeg62-turbo-dev libjs-bootstrap libjs-d3 libjs-es5-shim
  libjs-highlight.js libjs-jquery libjs-jquery-datatables
  libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js
  libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1
  libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblzma-dev libmagic-mgc
  libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
  libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev
  libpsl5 libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libswitch-perl
  libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0
  libuv1 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
  libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1
  libxt6 littler m4 man-db node-normalize.css pkg-config po-debconf
  r-base-core r-base-dev r-bioc-impute r-cran-assertthat r-cran-cli
  r-cran-crayon r-cran-digest r-cran-fansi r-cran-fs r-cran-gsa
  r-cran-htmltools r-cran-httpuv r-cran-jsonlite r-cran-later r-cran-littler
  r-cran-magrittr r-cran-matrixstats r-cran-mime r-cran-openxlsx r-cran-pillar
  r-cran-pkgconfig r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rcpp
  r-cran-rlang r-cran-shiny r-cran-shinyfiles r-cran-sourcetools r-cran-tibble
  r-cran-utf8 r-cran-xtable r-cran-zip sbuild-build-depends-r-cran-samr-dummy
  ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
  bzip2 libbz2-1.0 liblzma5 zlib1g
4 upgraded, 167 newly installed, 0 to remove and 25 not upgraded.
Need to get 95.0 MB/95.0 MB of archives.
After this operation, 268 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-eKHhwr/apt_archive ./ sbuild-build-depends-r-cran-samr-dummy 0.invalid.0 [912 B]
Get:2 http://172.17.4.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-2+deb10u1 [105 kB]
Get:3 http://172.17.4.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.4.1/private buster-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:5 http://172.17.4.1/private buster-staging/main armhf groff-base armhf 1.22.4-3+deb10u1 [782 kB]
Get:6 http://172.17.4.1/private buster-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:7 http://172.17.4.1/private buster-staging/main armhf zlib1g armhf 1:1.2.11.dfsg-1+deb10u2 [84.6 kB]
Get:8 http://172.17.4.1/private buster-staging/main armhf man-db armhf 2.8.5-2 [1230 kB]
Get:9 http://172.17.4.1/private buster-staging/main armhf node-normalize.css all 8.0.1-3 [12.5 kB]
Get:10 http://172.17.4.1/private buster-staging/main armhf bzip2 armhf 1.0.6-9.2~deb10u2 [46.3 kB]
Get:11 http://172.17.4.1/private buster-staging/main armhf libbz2-1.0 armhf 1.0.6-9.2~deb10u2 [43.3 kB]
Get:12 http://172.17.4.1/private buster-staging/main armhf liblzma5 armhf 5.2.4-1+deb10u1 [144 kB]
Get:13 http://172.17.4.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.35-4+deb10u2 [242 kB]
Get:14 http://172.17.4.1/private buster-staging/main armhf libmagic1 armhf 1:5.35-4+deb10u2 [110 kB]
Get:15 http://172.17.4.1/private buster-staging/main armhf file armhf 1:5.35-4+deb10u2 [65.5 kB]
Get:16 http://172.17.4.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:17 http://172.17.4.1/private buster-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:18 http://172.17.4.1/private buster-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:19 http://172.17.4.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:20 http://172.17.4.1/private buster-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:21 http://172.17.4.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:22 http://172.17.4.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:23 http://172.17.4.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:24 http://172.17.4.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:25 http://172.17.4.1/private buster-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:26 http://172.17.4.1/private buster-staging/main armhf libtool all 2.4.6-9 [547 kB]
Get:27 http://172.17.4.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:28 http://172.17.4.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:29 http://172.17.4.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get:30 http://172.17.4.1/private buster-staging/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get:31 http://172.17.4.1/private buster-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:32 http://172.17.4.1/private buster-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:33 http://172.17.4.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u4 [1079 kB]
Get:34 http://172.17.4.1/private buster-staging/main armhf libicu63 armhf 63.1-6+deb10u3 [7973 kB]
Get:35 http://172.17.4.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+deb10u4 [570 kB]
Get:36 http://172.17.4.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-3 [132 kB]
Get:37 http://172.17.4.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:38 http://172.17.4.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:39 http://172.17.4.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:40 http://172.17.4.1/private buster-staging/main armhf debhelper all 12.1.1 [1016 kB]
Get:41 http://172.17.4.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:42 http://172.17.4.1/private buster-staging/main armhf unzip armhf 6.0-23+deb10u3 [152 kB]
Get:43 http://172.17.4.1/private buster-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:44 http://172.17.4.1/private buster-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:45 http://172.17.4.1/private buster-staging/main armhf xdg-utils all 1.1.3-1+deb10u1 [73.7 kB]
Get:46 http://172.17.4.1/private buster-staging/main armhf libgfortran5 armhf 8.3.0-6+rpi1 [206 kB]
Get:47 http://172.17.4.1/private buster-staging/main armhf libblas3 armhf 3.8.0-2 [103 kB]
Get:48 http://172.17.4.1/private buster-staging/main armhf libexpat1 armhf 2.2.6-2+deb10u5 [78.8 kB]
Get:49 http://172.17.4.1/private buster-staging/main armhf libfreetype6 armhf 2.9.1-3+deb10u3 [317 kB]
Get:50 http://172.17.4.1/private buster-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:51 http://172.17.4.1/private buster-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:52 http://172.17.4.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:53 http://172.17.4.1/private buster-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:54 http://172.17.4.1/private buster-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:55 http://172.17.4.1/private buster-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:56 http://172.17.4.1/private buster-staging/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get:57 http://172.17.4.1/private buster-staging/main armhf libx11-data all 2:1.6.7-1+deb10u2 [299 kB]
Get:58 http://172.17.4.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.7-1+deb10u2 [689 kB]
Get:59 http://172.17.4.1/private buster-staging/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB]
Get:60 http://172.17.4.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13.1-2 [99.3 kB]
Get:61 http://172.17.4.1/private buster-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:62 http://172.17.4.1/private buster-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:63 http://172.17.4.1/private buster-staging/main armhf libcairo2 armhf 1.16.0-4+deb10u1 [600 kB]
Get:64 http://172.17.4.1/private buster-staging/main armhf libkrb5support0 armhf 1.17-3+deb10u4 [62.5 kB]
Get:65 http://172.17.4.1/private buster-staging/main armhf libk5crypto3 armhf 1.17-3+deb10u4 [117 kB]
Get:66 http://172.17.4.1/private buster-staging/main armhf libkrb5-3 armhf 1.17-3+deb10u4 [317 kB]
Get:67 http://172.17.4.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.17-3+deb10u4 [136 kB]
Get:68 http://172.17.4.1/private buster-staging/main armhf libnghttp2-14 armhf 1.36.0-2+deb10u1 [73.7 kB]
Get:69 http://172.17.4.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:70 http://172.17.4.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:71 http://172.17.4.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:72 http://172.17.4.1/private buster-staging/main armhf libcurl4 armhf 7.64.0-4+deb10u3 [294 kB]
Get:73 http://172.17.4.1/private buster-staging/main armhf x11-common all 1:7.7+19 [251 kB]
Get:74 http://172.17.4.1/private buster-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:75 http://172.17.4.1/private buster-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+deb10u1 [112 kB]
Get:76 http://172.17.4.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-2 [1493 kB]
Get:77 http://172.17.4.1/private buster-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:78 http://172.17.4.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3.1+deb10u2 [62.5 kB]
Get:79 http://172.17.4.1/private buster-staging/main armhf libthai-data all 0.1.28-2 [170 kB]
Get:80 http://172.17.4.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-2 [35.9 kB]
Get:81 http://172.17.4.1/private buster-staging/main armhf libthai0 armhf 0.1.28-2 [50.9 kB]
Get:82 http://172.17.4.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-8~deb10u1 [169 kB]
Get:83 http://172.17.4.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.13-7 [69.6 kB]
Get:84 http://172.17.4.1/private buster-staging/main armhf libharfbuzz0b armhf 2.3.1-1 [1144 kB]
Get:85 http://172.17.4.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-8~deb10u1 [62.3 kB]
Get:86 http://172.17.4.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-8~deb10u1 [52.0 kB]
Get:87 http://172.17.4.1/private buster-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:88 http://172.17.4.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.9+dfsg-2 [878 kB]
Get:89 http://172.17.4.1/private buster-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:90 http://172.17.4.1/private buster-staging/main armhf libwebp6 armhf 0.6.1-2+deb10u1 [227 kB]
Get:91 http://172.17.4.1/private buster-staging/main armhf libtiff5 armhf 4.1.0+git191117-2~deb10u4 [249 kB]
Get:92 http://172.17.4.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:93 http://172.17.4.1/private buster-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:94 http://172.17.4.1/private buster-staging/main armhf libtk8.6 armhf 8.6.9-2 [664 kB]
Get:95 http://172.17.4.1/private buster-staging/main armhf libxt6 armhf 1:1.1.5-1+b3 [156 kB]
Get:96 http://172.17.4.1/private buster-staging/main armhf r-base-core armhf 3.5.2-1 [23.6 MB]
Get:97 http://172.17.4.1/private buster-staging/main armhf libgfortran-8-dev armhf 8.3.0-6+rpi1 [249 kB]
Get:98 http://172.17.4.1/private buster-staging/main armhf gfortran-8 armhf 8.3.0-6+rpi1 [7202 kB]
Get:99 http://172.17.4.1/private buster-staging/main armhf gfortran armhf 4:8.3.0-1+rpi2 [1428 B]
Get:100 http://172.17.4.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-2 [113 kB]
Get:101 http://172.17.4.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-2 [1551 kB]
Get:102 http://172.17.4.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20181013-2+deb10u2 [278 kB]
Get:103 http://172.17.4.1/private buster-staging/main armhf libncurses5-dev armhf 6.1+20181013-2+deb10u2 [948 B]
Get:104 http://172.17.4.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:105 http://172.17.4.1/private buster-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+deb10u1 [181 kB]
Get:106 http://172.17.4.1/private buster-staging/main armhf libjpeg-dev all 1:1.5.2-2+deb10u1 [57.7 kB]
Get:107 http://172.17.4.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-12 [234 kB]
Get:108 http://172.17.4.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-12 [227 kB]
Get:109 http://172.17.4.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB]
Get:110 http://172.17.4.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-12 [564 kB]
Get:111 http://172.17.4.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1+deb10u2 [203 kB]
Get:112 http://172.17.4.1/private buster-staging/main armhf libpng-dev armhf 1.6.36-6 [281 kB]
Get:113 http://172.17.4.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-9.2~deb10u2 [27.7 kB]
Get:114 http://172.17.4.1/private buster-staging/main armhf liblzma-dev armhf 5.2.4-1+deb10u1 [203 kB]
Get:115 http://172.17.4.1/private buster-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:116 http://172.17.4.1/private buster-staging/main armhf icu-devtools armhf 63.1-6+deb10u3 [163 kB]
Get:117 http://172.17.4.1/private buster-staging/main armhf libicu-dev armhf 63.1-6+deb10u3 [8844 kB]
Get:118 http://172.17.4.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:119 http://172.17.4.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:120 http://172.17.4.1/private buster-staging/main armhf r-base-dev all 3.5.2-1 [4480 B]
Get:121 http://172.17.4.1/private buster-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:122 http://172.17.4.1/private buster-staging/main armhf dh-r all 20190121 [35.1 kB]
Get:123 http://172.17.4.1/private buster-staging/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-1 [515 kB]
Get:124 http://172.17.4.1/private buster-staging/main armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-1 [164 kB]
Get:125 http://172.17.4.1/private buster-staging/main armhf libboost-atomic1.67.0 armhf 1.67.0-13+deb10u1 [226 kB]
Get:126 http://172.17.4.1/private buster-staging/main armhf libjs-bootstrap all 3.4.1+dfsg-1 [173 kB]
Get:127 http://172.17.4.1/private buster-staging/main armhf libjs-d3 all 3.5.17-2 [132 kB]
Get:128 http://172.17.4.1/private buster-staging/main armhf libjs-es5-shim all 4.5.12-1 [42.6 kB]
Get:129 http://172.17.4.1/private buster-staging/main armhf libjs-highlight.js all 9.12.0+dfsg1-4+deb10u1 [300 kB]
Get:130 http://172.17.4.1/private buster-staging/main armhf libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB]
Get:131 http://172.17.4.1/private buster-staging/main armhf libjs-jquery-datatables all 1.10.19+dfsg-1 [136 kB]
Get:132 http://172.17.4.1/private buster-staging/main armhf libjs-sifter.js all 0.5.3+dfsg-1 [11.9 kB]
Get:133 http://172.17.4.1/private buster-staging/main armhf libjs-microplugin.js all 0.0.3+dfsg-1 [3430 B]
Get:134 http://172.17.4.1/private buster-staging/main armhf libjs-jquery-selectize.js all 0.12.6+dfsg-1 [51.9 kB]
Get:135 http://172.17.4.1/private buster-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB]
Get:136 http://172.17.4.1/private buster-staging/main armhf libjs-json all 0~20180723-2 [29.3 kB]
Get:137 http://172.17.4.1/private buster-staging/main armhf libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4 [32.0 kB]
Get:138 http://172.17.4.1/private buster-staging/main armhf libuv1 armhf 1.24.1-1+deb10u1 [96.9 kB]
Get:139 http://172.17.4.1/private buster-staging/main armhf r-cran-littler armhf 0.3.6-1 [304 kB]
Get:140 http://172.17.4.1/private buster-staging/main armhf littler all 0.3.6-1 [13.6 kB]
Get:141 http://172.17.4.1/private buster-staging/main armhf r-bioc-impute armhf 1.56.0-1 [663 kB]
Get:142 http://172.17.4.1/private buster-staging/main armhf r-cran-assertthat all 0.2.0-2 [54.4 kB]
Get:143 http://172.17.4.1/private buster-staging/main armhf r-cran-crayon all 1.3.4-4 [750 kB]
Get:144 http://172.17.4.1/private buster-staging/main armhf r-cran-cli all 1.0.1-1 [519 kB]
Get:145 http://172.17.4.1/private buster-staging/main armhf r-cran-digest armhf 0.6.18-1 [133 kB]
Get:146 http://172.17.4.1/private buster-staging/main armhf r-cran-fansi armhf 0.4.0-1 [330 kB]
Get:147 http://172.17.4.1/private buster-staging/main armhf r-cran-pkgkitten all 0.1.4-2 [22.4 kB]
Get:148 http://172.17.4.1/private buster-staging/main armhf r-cran-rcpp armhf 1.0.0-1+b1 [3356 kB]
Get:149 http://172.17.4.1/private buster-staging/main armhf r-cran-fs armhf 1.2.6+dfsg-1 [220 kB]
Get:150 http://172.17.4.1/private buster-staging/main armhf r-cran-gsa all 1.03.1-1 [100 kB]
Get:151 http://172.17.4.1/private buster-staging/main armhf r-cran-htmltools armhf 0.3.6-2 [167 kB]
Get:152 http://172.17.4.1/private buster-staging/main armhf r-cran-r6 all 2.4.0-1 [75.2 kB]
Get:153 http://172.17.4.1/private buster-staging/main armhf r-cran-rlang armhf 0.3.1-2 [1075 kB]
Get:154 http://172.17.4.1/private buster-staging/main armhf r-cran-later armhf 0.7.5+dfsg-2 [64.0 kB]
Get:155 http://172.17.4.1/private buster-staging/main armhf r-cran-magrittr all 1.5-5 [152 kB]
Get:156 http://172.17.4.1/private buster-staging/main armhf r-cran-promises armhf 1.0.1-2 [158 kB]
Get:157 http://172.17.4.1/private buster-staging/main armhf r-cran-httpuv armhf 1.4.5+dfsg-1 [265 kB]
Get:158 http://172.17.4.1/private buster-staging/main armhf r-cran-jsonlite armhf 1.6+dfsg-1 [432 kB]
Get:159 http://172.17.4.1/private buster-staging/main armhf r-cran-matrixstats armhf 0.54.0-1 [551 kB]
Get:160 http://172.17.4.1/private buster-staging/main armhf r-cran-mime armhf 0.6-1 [34.8 kB]
Get:161 http://172.17.4.1/private buster-staging/main armhf r-cran-zip armhf 1.0.0-1 [44.8 kB]
Get:162 http://172.17.4.1/private buster-staging/main armhf r-cran-openxlsx armhf 4.1.0-1 [1946 kB]
Get:163 http://172.17.4.1/private buster-staging/main armhf r-cran-utf8 armhf 1.1.4-1+b1 [126 kB]
Get:164 http://172.17.4.1/private buster-staging/main armhf r-cran-pillar all 1.3.1-1 [203 kB]
Get:165 http://172.17.4.1/private buster-staging/main armhf r-cran-pkgconfig all 2.0.2-1 [19.4 kB]
Get:166 http://172.17.4.1/private buster-staging/main armhf r-cran-xtable all 1:1.8-3-1 [737 kB]
Get:167 http://172.17.4.1/private buster-staging/main armhf r-cran-sourcetools armhf 0.1.7-2 [43.4 kB]
Get:168 http://172.17.4.1/private buster-staging/main armhf r-cran-shiny all 1.2.0+dfsg-1 [3013 kB]
Get:169 http://172.17.4.1/private buster-staging/main armhf r-cran-tibble armhf 2.0.1-1 [656 kB]
Get:170 http://172.17.4.1/private buster-staging/main armhf r-cran-shinyfiles all 0.7.2-1 [397 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 95.0 MB in 10s (9253 kB/s)
Selecting previously unselected package libbsd0:armhf.
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Setting up zlib1g:armhf (1:1.2.11.dfsg-1+deb10u2) ...
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Unpacking man-db (2.8.5-2) ...
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Setting up libbz2-1.0:armhf (1.0.6-9.2~deb10u2) ...
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Unpacking liblzma5:armhf (5.2.4-1+deb10u1) over (5.2.4-1) ...
Setting up liblzma5:armhf (5.2.4-1+deb10u1) ...
Selecting previously unselected package libmagic-mgc.
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Unpacking libmagic-mgc (1:5.35-4+deb10u2) ...
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Unpacking libmagic1:armhf (1:5.35-4+deb10u2) ...
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Unpacking file (1:5.35-4+deb10u2) ...
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Unpacking autopoint (0.19.8.1-9) ...
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Setting up libexpat1:armhf (2.2.6-2+deb10u5) ...
Setting up libpcrecpp0v5:armhf (2:8.39-12) ...
Setting up libpipeline1:armhf (1.5.1-2) ...
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Setting up libpixman-1-0:armhf (0.36.0-1) ...
Setting up libfile-which-perl (1.23-1) ...
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Setting up libpsl5:armhf (0.20.2-2) ...
Setting up libpcre16-3:armhf (2:8.39-12) ...
Setting up libdatrie1:armhf (0.2.12-2) ...
Setting up libmagic-mgc (1:5.35-4+deb10u2) ...
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Setting up libglib2.0-0:armhf (2.58.3-2+deb10u4) ...
No schema files found: doing nothing.
Setting up libjs-sifter.js (0.5.3+dfsg-1) ...
Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-1) ...
Setting up unzip (6.0-23+deb10u3) ...
Setting up x11-common (1:7.7+19) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
invoke-rc.d: could not determine current runlevel
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Setting up libicu63:armhf (63.1-6+deb10u3) ...
Setting up libkrb5support0:armhf (1.17-3+deb10u4) ...
Setting up libjs-es5-shim (4.5.12-1) ...
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Setting up autopoint (0.19.8.1-9) ...
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Setting up pkg-config (0.29-6) ...
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Setting up libboost-atomic1.67.0:armhf (1.67.0-13+deb10u1) ...
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Setting up libtiff5:armhf (4.1.0+git191117-2~deb10u4) ...
Setting up libjs-jquery (3.3.1~dfsg-3+deb10u1) ...
Setting up libbsd0:armhf (0.9.1-2+deb10u1) ...
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Setting up libelf1:armhf (0.176-1.1) ...
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Setting up dctrl-tools (2.24-3) ...
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Setting up libpaper1:armhf (1.1.28) ...

Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libxcb1:armhf (1.13.1-2) ...
Setting up libtool (2.4.6-9) ...
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Setting up libpcre3-dev:armhf (2:8.39-12) ...
Setting up fontconfig-config (2.13.1-2) ...
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Setting up m4 (1.4.18-2) ...
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Setting up libpaper-utils (1.1.28) ...
Setting up gfortran (4:8.3.0-1+rpi2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libjs-jquery-datatables (1.10.19+dfsg-1) ...
Setting up libthai0:armhf (0.1.28-2) ...
Setting up libblas3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libjs-jquery-ui (1.12.1+dfsg-5) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-3+deb10u4) ...
Setting up libcroco3:armhf (0.6.12-3) ...
Setting up icu-devtools (63.1-6+deb10u3) ...
Setting up autoconf (2.69-11) ...
Setting up dwz (0.12-3) ...
Setting up groff-base (1.22.4-3+deb10u1) ...
Setting up libcurl4:armhf (7.64.0-4+deb10u3) ...
Setting up libx11-6:armhf (2:1.6.7-1+deb10u2) ...
Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libicu-dev:armhf (63.1-6+deb10u3) ...
Setting up libxmuu1:armhf (2:1.1.2-2+b3) ...
Setting up libblas-dev:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up liblapack3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up gettext (0.19.8.1-9) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libpango-1.0-0:armhf (1.42.4-8~deb10u1) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up man-db (2.8.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink /etc/systemd/system/timers.target.wants/man-db.timer -> /lib/systemd/system/man-db.timer.
Setting up libcairo2:armhf (1.16.0-4+deb10u1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up liblapack-dev:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libxt6:armhf (1:1.1.5-1+b3) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-8~deb10u1) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-8~deb10u1) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up po-debconf (1.0.21) ...
Setting up libtk8.6:armhf (8.6.9-2) ...
Setting up r-base-core (3.5.2-1) ...

Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.3.4-4) ...
Setting up r-cran-sourcetools (0.1.7-2) ...
Setting up r-cran-zip (1.0.0-1) ...
Setting up r-cran-r6 (2.4.0-1) ...
Setting up r-cran-pkgkitten (0.1.4-2) ...
Setting up r-cran-gsa (1.03.1-1) ...
Setting up r-cran-magrittr (1.5-5) ...
Setting up r-cran-littler (0.3.6-1) ...
Setting up r-cran-rcpp (1.0.0-1+b1) ...
Setting up r-cran-rlang (0.3.1-2) ...
Setting up r-cran-matrixstats (0.54.0-1) ...
Setting up r-base-dev (3.5.2-1) ...
Setting up r-cran-assertthat (0.2.0-2) ...
Setting up littler (0.3.6-1) ...
Setting up r-cran-openxlsx (4.1.0-1) ...
Setting up r-bioc-impute (1.56.0-1) ...
Setting up r-cran-mime (0.6-1) ...
Setting up r-cran-digest (0.6.18-1) ...
Setting up r-cran-fansi (0.4.0-1) ...
Setting up r-cran-xtable (1:1.8-3-1) ...
Setting up r-cran-cli (1.0.1-1) ...
Setting up r-cran-jsonlite (1.6+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.2-1) ...
Setting up r-cran-utf8 (1.1.4-1+b1) ...
Setting up r-cran-later (0.7.5+dfsg-2) ...
Setting up r-cran-htmltools (0.3.6-2) ...
Setting up r-cran-pillar (1.3.1-1) ...
Setting up r-cran-fs (1.2.6+dfsg-1) ...
Setting up r-cran-tibble (2.0.1-1) ...
Setting up r-cran-promises (1.0.1-2) ...
Setting up r-cran-httpuv (1.4.5+dfsg-1) ...
Setting up r-cran-shiny (1.2.0+dfsg-1) ...
Setting up r-cran-shinyfiles (0.7.2-1) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.1.2-1) ...
Setting up debhelper (12.1.1) ...
Setting up dh-r (20190121) ...
Setting up sbuild-build-depends-r-cran-samr-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-10+rpi1) ...
Processing triggers for systemd (241-7~deb10u8+rpi1) ...

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-16+rpi2 dpkg-dev_1.19.7 g++-8_8.3.0-6+rpi1 gcc-8_8.3.0-6+rpi1 libc6-dev_2.28-10+rpi1 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.2.3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3+rpi1+deb10u10 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16+rpi2 binutils-arm-linux-gnueabihf_2.31.1-16+rpi2 binutils-common_2.31.1-16+rpi2 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9.2~deb10u2 ca-certificates_20200601~deb10u2 coreutils_8.30-3 cpio_2.12+dfsg-9 cpp_4:8.3.0-1+rpi2 cpp-8_8.3.0-6+rpi1 dash_0.5.10.2-5 dctrl-tools_2.24-3 debconf_1.5.71 debhelper_12.1.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-r_20190121 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dirmngr_2.2.12-1+rpi1+deb10u1 dmsetup_2:1.02.155-3 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.12-3 e2fslibs_1.44.5-1+deb10u3 e2fsprogs_1.44.5-1+deb10u3 e2fsprogs-l10n_1.44.5-1+deb10u3 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4+deb10u2 findutils_4.6.0+git+20190209-2 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 fonts-font-awesome_5.0.10+really4.7.0~dfsg-1 fonts-glyphicons-halflings_1.009~3.4.1+dfsg-1 g++_4:8.3.0-1+rpi2 g++-8_8.3.0-6+rpi1 gcc_4:8.3.0-1+rpi2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-8_8.3.0-6+rpi1 gcc-8-base_8.3.0-6+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gfortran_4:8.3.0-1+rpi2 gfortran-8_8.3.0-6+rpi1 gnupg_2.2.12-1+rpi1+deb10u1 gnupg-agent_2.2.12-1+rpi1+deb10u1 gnupg-l10n_2.2.12-1+rpi1+deb10u1 gnupg-utils_2.2.12-1+rpi1+deb10u1 gpg_2.2.12-1+rpi1+deb10u1 gpg-agent_2.2.12-1+rpi1+deb10u1 gpg-wks-client_2.2.12-1+rpi1+deb10u1 gpg-wks-server_2.2.12-1+rpi1+deb10u1 gpgconf_2.2.12-1+rpi1+deb10u1 gpgsm_2.2.12-1+rpi1+deb10u1 gpgv_2.2.12-1+rpi1+deb10u1 grep_3.3-1 groff-base_1.22.4-3+deb10u1 gzip_1.9-3 hostname_3.21 icu-devtools_63.1-6+deb10u3 inetutils-ping_2:1.9.4-7+deb10u1 init-system-helpers_1.56+nmu1 initramfs-tools_0.133+deb10u1 initramfs-tools-core_0.133+deb10u1 intltool-debian_0.35.0+20060710.5 klibc-utils_2.0.6-1+rpi1+deb10u1 kmod_26-1 libacl1_2.2.53-4 libapparmor1_2.13.2-10 libapt-pkg5.0_1.8.2.3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.2 libasan5_8.3.0-6+rpi1 libassuan0_2.5.2-1 libatomic1_8.3.0-6+rpi1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16+rpi2 libblas-dev_3.8.0-2 libblas3_3.8.0-2 libblkid1_2.33.1-0.1 libboost-atomic1.67.0_1.67.0-13+deb10u1 libbsd0_0.9.1-2+deb10u1 libbz2-1.0_1.0.6-9.2~deb10u2 libbz2-dev_1.0.6-9.2~deb10u2 libc-bin_2.28-10+rpi1 libc-dev-bin_2.28-10+rpi1 libc6_2.28-10+rpi1 libc6-dev_2.28-10+rpi1 libcairo2_1.16.0-4+deb10u1 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcc1-0_8.3.0-6+rpi1 libcom-err2_1.44.5-1+deb10u3 libcroco3_0.6.12-3 libcryptsetup12_2:2.1.0-5+deb10u2 libcryptsetup4_2:1.7.5-1 libcurl4_7.64.0-4+deb10u3 libdatrie1_0.2.12-2 libdb5.3_5.3.28+dfsg1-0.5 libdbus-1-3_1.12.20-0+deb10u1 libdebconfclient0_0.249 libdevmapper1.02.1_2:1.02.155-3 libdpkg-perl_1.19.7 libdrm-common_2.4.97-1+rpi1 libdrm2_2.4.97-1+rpi1 libelf1_0.176-1.1 libexpat1_2.2.6-2+deb10u5 libext2fs2_1.44.5-1+deb10u3 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libfl2_2.6.4-6.2 libfontconfig1_2.13.1-2 libfreetype6_2.9.1-3+deb10u3 libfribidi0_1.0.5-3.1+deb10u2 libgcc-8-dev_8.3.0-6+rpi1 libgcc1_1:8.3.0-6+rpi1 libgcrypt20_1.8.4-5+deb10u1 libgdbm-compat4_1.18.1-4 libgdbm3_1.8.3-14 libgdbm6_1.18.1-4 libgfortran-8-dev_8.3.0-6+rpi1 libgfortran5_8.3.0-6+rpi1 libglib2.0-0_2.58.3-2+deb10u4 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-4+deb10u7 libgomp1_8.3.0-6+rpi1 libgpg-error-l10n_1.35-1 libgpg-error0_1.35-1 libgraphite2-3_1.3.13-7 libgssapi-krb5-2_1.17-3+deb10u4 libharfbuzz0b_2.3.1-1 libhogweed4_3.4.1-1+deb10u1 libice6_2:1.0.9-2 libicu-dev_63.1-6+deb10u3 libicu63_63.1-6+deb10u3 libidn11_1.33-2.2 libidn2-0_2.0.5-1+deb10u1 libip4tc0_1.8.2-4 libisl19_0.20-2 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.2-2+deb10u1 libjpeg62-turbo_1:1.5.2-2+deb10u1 libjpeg62-turbo-dev_1:1.5.2-2+deb10u1 libjs-bootstrap_3.4.1+dfsg-1 libjs-d3_3.5.17-2 libjs-es5-shim_4.5.12-1 libjs-highlight.js_9.12.0+dfsg1-4+deb10u1 libjs-jquery_3.3.1~dfsg-3+deb10u1 libjs-jquery-datatables_1.10.19+dfsg-1 libjs-jquery-selectize.js_0.12.6+dfsg-1 libjs-jquery-ui_1.12.1+dfsg-5 libjs-json_0~20180723-2 libjs-microplugin.js_0.0.3+dfsg-1 libjs-sifter.js_0.5.3+dfsg-1 libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4 libjson-c3_0.12.1+ds-2+deb10u1 libk5crypto3_1.17-3+deb10u4 libkeyutils1_1.6-6 libklibc_2.0.6-1+rpi1+deb10u1 libkmod2_26-1 libkrb5-3_1.17-3+deb10u4 libkrb5support0_1.17-3+deb10u4 libksba8_1.3.5-2 liblapack-dev_3.8.0-2 liblapack3_3.8.0-2 libldap-2.4-2_2.4.47+dfsg-3+rpi1+deb10u6 libldap-common_2.4.47+dfsg-3+rpi1+deb10u6 liblz4-1_1.8.3-1+deb10u1 liblzma-dev_5.2.4-1+deb10u1 liblzma5_5.2.4-1+deb10u1 libmagic-mgc_1:5.35-4+deb10u2 libmagic1_1:5.35-4+deb10u2 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses-dev_6.1+20181013-2+deb10u2 libncurses5_6.1+20181013-2+deb10u2 libncurses5-dev_6.1+20181013-2+deb10u2 libncurses6_6.1+20181013-2+deb10u2 libncursesw5_6.1+20181013-2+deb10u2 libncursesw6_6.1+20181013-2+deb10u2 libnettle6_3.4.1-1+deb10u1 libnghttp2-14_1.36.0-2+deb10u1 libnpth0_1.6-1 libp11-kit0_0.23.15-2+deb10u1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpango-1.0-0_1.42.4-8~deb10u1 libpangocairo-1.0-0_1.42.4-8~deb10u1 libpangoft2-1.0-0_1.42.4-8~deb10u1 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre16-3_2:8.39-12 libpcre3_2:8.39-12 libpcre3-dev_2:8.39-12 libpcre32-3_2:8.39-12 libpcrecpp0v5_2:8.39-12 libperl5.24_5.24.1-7 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpixman-1-0_0.36.0-1 libplymouth4_0.9.4-1.1 libpng-dev_1.6.36-6 libpng16-16_1.6.36-6 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libreadline-dev_7.0-5 libreadline7_7.0-5 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1+deb10u1 libsasl2-modules_2.1.27+dfsg-1+deb10u1 libsasl2-modules-db_2.1.27+dfsg-1+deb10u1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.27.2-3+deb10u1 libss2_1.44.5-1+deb10u3 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-0+deb10u6 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 libswitch-perl_2.17-2 libsystemd0_241-7~deb10u8+rpi1 libtasn1-6_4.13-3 libtcl8.6_8.6.9+dfsg-2 libthai-data_0.1.28-2 libthai0_0.1.28-2 libtiff5_4.1.0+git191117-2~deb10u4 libtinfo5_6.1+20181013-2+deb10u2 libtinfo6_6.1+20181013-2+deb10u2 libtk8.6_8.6.9-2 libtool_2.4.6-9 libubsan1_8.3.0-6+rpi1 libuchardet0_0.0.6-3 libudev1_241-7~deb10u8+rpi1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.33.1-0.1 libuv1_1.24.1-1+deb10u1 libwebp6_0.6.1-2+deb10u1 libx11-6_2:1.6.7-1+deb10u2 libx11-data_2:1.6.7-1+deb10u2 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7+deb10u4 libxmuu1_2:1.1.2-2+b3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1+b3 libzstd1_1.3.8+dfsg-3+rpi1+deb10u2 linux-base_4.6 linux-libc-dev_4.18.20-2+rpi1 littler_0.3.6-1 login_1:4.5-1.1 lsb-base_10.2019051400+rpi1 m4_1.4.18-2 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.5-2 mawk_1.3.3-17 mount_2.33.1-0.1 multiarch-support_2.28-10+rpi1 nano_3.2-3 ncurses-base_6.1+20181013-2+deb10u2 ncurses-bin_6.1+20181013-2+deb10u2 netbase_5.6 node-normalize.css_8.0.1-3 openssl_1.1.1d-0+deb10u6 passwd_1:4.5-1.1 patch_2.7.6-3+deb10u1 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.24_5.24.1-7 perl-modules-5.28_5.28.1-6+deb10u1 pinentry-curses_1.1.0-2 pkg-config_0.29-6 plymouth_0.9.4-1.1 po-debconf_1.0.21 procps_2:3.3.15-2 r-base-core_3.5.2-1 r-base-dev_3.5.2-1 r-bioc-impute_1.56.0-1 r-cran-assertthat_0.2.0-2 r-cran-cli_1.0.1-1 r-cran-crayon_1.3.4-4 r-cran-digest_0.6.18-1 r-cran-fansi_0.4.0-1 r-cran-fs_1.2.6+dfsg-1 r-cran-gsa_1.03.1-1 r-cran-htmltools_0.3.6-2 r-cran-httpuv_1.4.5+dfsg-1 r-cran-jsonlite_1.6+dfsg-1 r-cran-later_0.7.5+dfsg-2 r-cran-littler_0.3.6-1 r-cran-magrittr_1.5-5 r-cran-matrixstats_0.54.0-1 r-cran-mime_0.6-1 r-cran-openxlsx_4.1.0-1 r-cran-pillar_1.3.1-1 r-cran-pkgconfig_2.0.2-1 r-cran-pkgkitten_0.1.4-2 r-cran-promises_1.0.1-2 r-cran-r6_2.4.0-1 r-cran-rcpp_1.0.0-1+b1 r-cran-rlang_0.3.1-2 r-cran-shiny_1.2.0+dfsg-1 r-cran-shinyfiles_0.7.2-1 r-cran-sourcetools_0.1.7-2 r-cran-tibble_2.0.1-1 r-cran-utf8_1.1.4-1+b1 r-cran-xtable_1:1.8-3-1 r-cran-zip_1.0.0-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-samr-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_241-7~deb10u8+rpi1 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2021a-0+deb10u1 ucf_3.0038+nmu1 udev_241-7~deb10u8+rpi1 unzip_6.0-23+deb10u3 util-linux_2.33.1-0.1 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.3-1+deb10u1 xz-utils_5.2.4-1 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1+deb10u2 zlib1g-dev_1:1.2.11.dfsg-1+deb10u2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Dec 18 07:19:52 2018 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-cran-samr_3.0-1.dsc
dpkg-source: info: extracting r-cran-samr in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-cran-samr_3.0.orig.tar.gz
dpkg-source: info: unpacking r-cran-samr_3.0-1.debian.tar.xz

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-914a9d28-024b-4060-992c-ca538dea4dee
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package r-cran-samr
dpkg-buildpackage: info: source version 3.0-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules build-arch
dh build-arch --buildsystem R
   dh_update_autotools_config -a -O--buildsystem=R
   dh_autoreconf -a -O--buildsystem=R
   dh_auto_configure -a -O--buildsystem=R
   dh_auto_build -a -O--buildsystem=R
   dh_auto_test -a -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
   dh_testroot -a -O--buildsystem=R
   dh_prep -a -O--buildsystem=R
   dh_auto_install -a -O--buildsystem=R
I: R Package: samr Version: 3.0
I: Building using R version 3.5.2-1
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Tue, 18 Dec 2018 08:16:30 +0100
	mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-samr/usr/lib/R/site-library
	R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-samr/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 18 Dec 2018 08:16:30 +0100'"
* installing *source* package 'samr' ...
** package 'samr' successfully unpacked and MD5 sums checked
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gfortran   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-xoRi9J/r-base-3.5.2=. -fstack-protector-strong  -c rankcol.f -o rankcol.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-xoRi9J/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c samr_init.c -o samr_init.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o samr.so rankcol.o samr_init.o -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-cran-samr/usr/lib/R/site-library/samr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
terminate called after throwing an instance of 'std::runtime_error'
  what():  Mutex creation failed
Aborted
dh_auto_install: R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-samr/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 18 Dec 2018 08:16:30 +0100'" returned exit code 134
make: *** [debian/rules:4: binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2022-10-06T22:39:54Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 0
Build-Time: 18
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 1578
Job: r-cran-samr_3.0-1
Machine Architecture: armhf
Package: r-cran-samr
Package-Time: 1648
Source-Version: 3.0-1
Space: 0
Status: failed
Version: 3.0-1
--------------------------------------------------------------------------------
Finished at 2022-10-06T22:39:54Z
Build needed 00:00:00, 0k disc space