r-cran-rnetcdf →
2.8-1-1 →
armhf → 2023-10-25 05:17:35
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| r-cran-rnetcdf 2.8-1-1 (armhf) Wed, 25 Oct 2023 05:09:26 +0000 |
+==============================================================================+
Package: r-cran-rnetcdf
Version: 2.8-1-1
Source Version: 2.8-1-1
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-bd2b64a1-03b7-4da6-a3a5-176f1b403e46' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.2 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.9 MB]
Fetched 29.1 MB in 9s (3083 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-rnetcdf' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-rnetcdf.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-rnetcdf.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 167 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-cran-rnetcdf 2.8-1-1 (dsc) [2135 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-cran-rnetcdf 2.8-1-1 (tar) [160 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-cran-rnetcdf 2.8-1-1 (diff) [4536 B]
Fetched 167 kB in 0s (4022 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-rnetcdf-jnPox3/r-cran-rnetcdf-2.8-1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-rnetcdf-jnPox3' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-yAJKwb/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-yAJKwb/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-yAJKwb/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-yAJKwb/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-yAJKwb/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-yAJKwb/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-yAJKwb/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-yAJKwb/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (8490 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 6 not upgraded.
Need to get 856 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-yAJKwb/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 856 B in 0s (73.4 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11866 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, libnetcdf-dev, libudunits2-dev
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, libnetcdf-dev, libudunits2-dev
dpkg-deb: building package 'sbuild-build-depends-r-cran-rnetcdf-dummy' in '/<<BUILDDIR>>/resolver-yAJKwb/apt_archive/sbuild-build-depends-r-cran-rnetcdf-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-cran-rnetcdf-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-yAJKwb/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-yAJKwb/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-yAJKwb/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-yAJKwb/apt_archive ./ Sources [522 B]
Get:5 copy:/<<BUILDDIR>>/resolver-yAJKwb/apt_archive ./ Packages [604 B]
Fetched 2459 B in 0s (12.4 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-cran-rnetcdf build dependencies (apt-based resolver)
--------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-12 groff-base hdf5-helpers icu-devtools
intltool-debian libaec-dev libaec0 libalgorithm-c3-perl libarchive-zip-perl
libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
libcurl4-gnutls-dev libdata-optlist-perl libdatrie1 libdebhelper-perl
libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev
libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev
libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
libncursesw6 libnetcdf-dev libnetcdf19 libnghttp2-14
libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libssh2-1 libssl-dev
libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtinfo6
libtk8.6 libtool libtry-tiny-perl libuchardet0 libudunits2-0
libudunits2-data libudunits2-dev liburi-perl libvariable-magic-perl libwebp7
libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxml2-dev libxmuu1 libxrender1 libxss1 libxt6 m4 man-db ncurses-base
ncurses-bin openssl pkg-config pkgconf pkgconf-bin po-debconf r-base-core
r-base-dev ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-12-doc libcoarrays-dev groff liblapack-doc
libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev
libssh2-1-dev low-memory-monitor libhdf5-doc icu-doc liblzma-doc ncurses-doc
netcdf-bin netcdf-doc libscalar-number-perl readline-doc libssl-doc tcl8.6
tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl
libwww-perl m4-doc apparmor less www-browser libmail-box-perl elpa-ess
r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libio-compress-brotli-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-12 groff-base hdf5-helpers icu-devtools
intltool-debian libaec-dev libaec0 libalgorithm-c3-perl libarchive-zip-perl
libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
libcurl4-gnutls-dev libdata-optlist-perl libdatrie1 libdebhelper-perl
libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev
libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev
libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
libnetcdf-dev libnetcdf19 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0
libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3
libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1 libsharpyuv0 libsm6
libssh2-1 libssl-dev libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libsz2 libtcl8.6 libthai-data libthai0
libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0
libudunits2-0 libudunits2-data libudunits2-dev liburi-perl
libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxml2-dev libxmuu1 libxrender1 libxss1 libxt6 m4
man-db openssl pkg-config pkgconf pkgconf-bin po-debconf r-base-core
r-base-dev sbuild-build-depends-r-cran-rnetcdf-dummy ucf unzip x11-common
xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
libncursesw6 libtinfo6 ncurses-base ncurses-bin
4 upgraded, 186 newly installed, 0 to remove and 2 not upgraded.
Need to get 98.4 MB of archives.
After this operation, 297 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-yAJKwb/apt_archive ./ sbuild-build-depends-r-cran-rnetcdf-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf ncurses-bin armhf 6.4+20231016-1 [419 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf ncurses-base all 6.4+20231016-1 [266 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf libtinfo6 armhf 6.4+20231016-1 [324 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libncursesw6 armhf 6.4+20231016-1 [106 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-4 [80.8 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.11.2-3 [1342 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.0.11-1 [1367 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-13 [156 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.7 [82.1 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:31 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-13 [1201 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.7 [956 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf zip armhf 3.0-13 [207 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf unzip armhf 6.0-28 [147 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libpaper1 armhf 1.1.29 [11.9 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf libpaper-utils armhf 1.1.29 [8416 B]
Get:43 http://172.17.4.1/private trixie-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-2 [258 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.57.0-1 [61.6 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-2 [195 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 8.4.0-2 [363 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.0-2+rpi1 [1249 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-4+rpi1 [247 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-2 [187 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-2 [40.4 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-2 [30.0 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-3 [133 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-1 [298 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.1-4 [26.3 MB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libgfortran-12-dev armhf 12.3.0-10+rpi1 [285 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf gfortran-12 armhf 12.3.0-10+rpi1 [7527 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:12.2.0-3+rpi1 [1424 B]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20231016-1 [80.0 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20231016-1 [290 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-1.3 [123 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.40-2 [336 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.4-0.1 [269 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-4 [174 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-4 [9956 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.1-4 [4512 B]
Get:126 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.44-2 [81.8 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:147 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:148 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:150 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2206-1 [795 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1 [12.0 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.4.0-2 [358 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10 [55.8 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20230912 [40.8 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf hdf5-helpers armhf 1.10.10+repack-3 [23.2 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf libaec0 armhf 1.1.2-1 [21.3 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf libsz2 armhf 1.1.2-1 [7700 B]
Get:175 http://172.17.4.1/private trixie-staging/main armhf libaec-dev armhf 1.1.2-1 [18.4 kB]
Get:176 http://172.17.4.1/private trixie-staging/main armhf libcurl4-gnutls-dev armhf 8.4.0-2 [441 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf libhdf5-103-1 armhf 1.10.10+repack-3 [1215 kB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.10+repack-3 [112 kB]
Get:179 http://172.17.4.1/private trixie-staging/main armhf libhdf5-fortran-102 armhf 1.10.10+repack-3 [77.3 kB]
Get:180 http://172.17.4.1/private trixie-staging/main armhf libhdf5-hl-100 armhf 1.10.10+repack-3 [59.9 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.10+repack-3 [34.1 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.10+repack-3 [20.5 kB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf libssl-dev armhf 3.0.11-1 [2105 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf libhdf5-dev armhf 1.10.10+repack-3 [2314 kB]
Get:185 http://172.17.4.1/private trixie-staging/main armhf libnetcdf19 armhf 1:4.9.2-2 [408 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf libxml2-dev armhf 2.9.14+dfsg-1.3 [636 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf libnetcdf-dev armhf 1:4.9.2-2 [103 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf libudunits2-data all 2.2.28-7 [26.4 kB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf libudunits2-0 armhf 2.2.28-7 [50.5 kB]
Get:190 http://172.17.4.1/private trixie-staging/main armhf libudunits2-dev armhf 2.2.28-7 [363 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libexpat1:armhf (2.5.0-2) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up libpixman-1-0:armhf (0.42.2-1) ...
Setting up libsharpyuv0:armhf (1.3.2-0.3) ...
Setting up libfile-which-perl (1.27-2) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.2-1+b1) ...
Setting up libicu72:armhf (72.1-4) ...
Setting up liblerc4:armhf (4.0.0+ds-3) ...
Setting up bsdextrautils (2.39.2-4) ...
Setting up hdf5-helpers (1.10.10+repack-3) ...
Setting up libdynaloader-functions-perl (0.003-3) ...
Setting up libdatrie1:armhf (0.2.13-2+b2) ...
Setting up libmagic-mgc (1:5.45-2) ...
Setting up libclone-perl:armhf (0.46-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-3) ...
Setting up libglib2.0-0:armhf (2.78.0-2+rpi1) ...
No schema files found: doing nothing.
Setting up unzip (6.0-28) ...
Setting up libdebhelper-perl (13.11.7) ...
Setting up libbrotli1:armhf (1.0.9-2+b3) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libtry-tiny-perl (0.31-2) ...
Setting up libnghttp2-14:armhf (1.57.0-1) ...
Setting up libmagic1:armhf (1:5.45-2) ...
Setting up libdeflate0:armhf (1.18-1) ...
Setting up gettext-base (0.21-13) ...
Setting up m4 (1.4.19-4) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up file (1:5.45-2) ...
Setting up libjbig0:armhf (2.1-6.1) ...
Setting up libpcre2-16-0:armhf (10.42-4) ...
Setting up libaec0:armhf (1.1.2-1) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up zip (3.0-13) ...
Setting up libpackage-stash-xs-perl:armhf (0.30-1+b1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpcre2-32-0:armhf (10.42-4) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpkgconf3:armhf (1.8.1-1) ...
Setting up libalgorithm-c3-perl (0.11-2) ...
Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ...
Setting up libswitch-perl (2.17-3) ...
Setting up libx11-data (2:1.8.7-1) ...
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Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.4+20231016-1) ...
Setting up libfribidi0:armhf (1.0.13-3) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libssl-dev:armhf (3.0.11-1) ...
Setting up libpng16-16:armhf (1.6.40-2) ...
Setting up libvariable-magic-perl (0.63-1+b1) ...
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Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ...
Setting up autopoint (0.21-13) ...
Setting up libb-hooks-op-check-perl:armhf (0.22-2+b1) ...
Setting up icu-devtools (72.1-4) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up ucf (3.0043+nmu1) ...
Setting up pkgconf-bin (1.8.1-1) ...
Setting up libparams-util-perl (1.102-2+b1) ...
Setting up libgfortran5:armhf (13.2.0-4+rpi1) ...
Setting up autoconf (2.71-3) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
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Setting up libtimedate-perl (2.3300-2) ...
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Setting up libsub-name-perl:armhf (0.27-1) ...
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Setting up libpcre2-posix3:armhf (10.42-4) ...
Setting up libudunits2-data (2.2.28-7) ...
Setting up libtiff6:armhf (4.5.1+git230720-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libthai-data (0.1.29-1) ...
Setting up libdevel-globaldestruction-perl (0.14-4) ...
Setting up libssh2-1:armhf (1.11.0-2) ...
Setting up libdevel-stacktrace-perl (2.0400-2) ...
Setting up openssl (3.0.11-1) ...
Setting up libbsd0:armhf (0.11.7-4) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
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Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up liburi-perl (5.21-1) ...
Setting up libblas-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up libsz2:armhf (1.1.2-1) ...
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-5+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libpaper1:armhf (1.1.29) ...
Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.4+20231016-1) ...
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-13) ...
Setting up libpcre2-dev:armhf (10.42-4) ...
Setting up libtool (2.4.7-7) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up fontconfig-config (2.14.2-6) ...
Setting up libpng-dev:armhf (1.6.40-2) ...
Setting up libaec-dev:armhf (1.1.2-1) ...
Setting up libjpeg-dev:armhf (1:2.1.5-2) ...
Setting up libcurl3-gnutls:armhf (8.4.0-2) ...
Setting up libgfortran-12-dev:armhf (12.3.0-10+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libpaper-utils (1.1.29) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:armhf (8.2-1.3) ...
Setting up libcurl4-gnutls-dev:armhf (8.4.0-2) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up gfortran-12 (12.3.0-10+rpi1) ...
Setting up libxml2-dev:armhf (2.9.14+dfsg-1.3) ...
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.114-1) ...
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libcurl4:armhf (8.4.0-2) ...
Setting up libx11-6:armhf (2:1.8.7-1) ...
Setting up libharfbuzz0b:armhf (8.0.1-1) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (6.44-2) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-10) ...
Setting up man-db (2.11.2-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:12.2.0-3+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1.1) ...
Setting up libhdf5-103-1:armhf (1.10.10+repack-3) ...
Setting up xauth (1:1.1.2-1) ...
Setting up libhdf5-cpp-103-1:armhf (1.10.10+repack-3) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libhdf5-hl-100:armhf (1.10.10+repack-3) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up debhelper (13.11.7) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.10+repack-3) ...
Setting up libhdf5-fortran-102:armhf (1.10.10+repack-3) ...
Setting up libnetcdf19:armhf (1:4.9.2-2) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up libhdf5-hl-fortran-100:armhf (1.10.10+repack-3) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up libmoose-perl:armhf (2.2206-1) ...
Setting up libhdf5-dev (1.10.10+repack-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libnetcdf-dev (1:4.9.2-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up fontconfig (2.14.2-6) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libudunits2-0 (2.2.28-7) ...
Setting up libudunits2-dev (2.2.28-7) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Setting up libpango-1.0-0:armhf (1.51.0+ds-2) ...
Setting up libcairo2:armhf (1.18.0-1) ...
Setting up libpangoft2-1.0-0:armhf (1.51.0+ds-2) ...
Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-2) ...
Setting up r-base-core (4.3.1-4) ...
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (4.3.1-4) ...
Setting up dh-r (20230912) ...
Setting up sbuild-build-depends-r-cran-rnetcdf-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.37-12+rpi2) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.0+rpi1 g++-12_12.3.0-10+rpi1 gcc-12_12.3.0-10+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++6_13.2.0-4+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.2-4 bsdutils_1:2.39.2-4 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20230311 coreutils_9.1-1 cpp_4:12.2.0-3+rpi1 cpp-12_12.3.0-10+rpi1 dash_0.5.12-6 dctrl-tools_2.24-3 debconf_1.5.82 debhelper_13.11.7 debianutils_5.14 dh-autoreconf_20 dh-r_20230912 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1.1 dpkg_1.22.0+rpi1 dpkg-dev_1.22.0+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-6 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:12.2.0-3+rpi1 g++-12_12.3.0-10+rpi1 gcc_4:12.2.0-3+rpi1 gcc-12_12.3.0-10+rpi1 gcc-12-base_12.3.0-10+rpi1 gcc-13-base_13.2.0-4+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-13 gettext-base_0.21-13 gfortran_4:12.2.0-3+rpi1 gfortran-12_12.3.0-10+rpi1 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hdf5-helpers_1.10.10+repack-3 hostname_3.23+nmu1 icu-devtools_72.1-4 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-4 libacl1_2.3.1-3 libaec-dev_1.1.2-1 libaec0_1.1.2-1 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-4+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-4+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.41-6+rpi1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.2-4 libbrotli1_1.0.9-2+b3 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.37-12+rpi2 libc-dev-bin_2.37-12+rpi2 libc6_2.37-12+rpi2 libc6-dev_2.37-12+rpi2 libcairo2_1.18.0-1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcc1-0_13.2.0-4+rpi1 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2+b1 libclone-perl_0.46-1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libcurl3-gnutls_8.4.0-2 libcurl4_8.4.0-2 libcurl4-gnutls-dev_8.4.0-2 libdata-optlist-perl_0.114-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.271 libdebhelper-perl_13.11.7 libdeflate0_1.18-1 libdevel-callchecker-perl_0.008-2 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-2 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.22.0+rpi1 libdynaloader-functions-perl_0.003-3 libelf1_0.188-2.1+rpi1 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 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libp11-kit0_0.25.0-5 libpackage-deprecationmanager-perl_0.18-1 libpackage-stash-perl_0.40-1 libpackage-stash-xs-perl_0.30-1+b1 libpam-cap_1:2.66-4 libpam-modules_1.5.2-7 libpam-modules-bin_1.5.2-7 libpam-runtime_1.5.2-7 libpam0g_1.5.2-7 libpango-1.0-0_1.51.0+ds-2 libpangocairo-1.0-0_1.51.0+ds-2 libpangoft2-1.0-0_1.51.0+ds-2 libpaper-utils_1.1.29 libpaper1_1.1.29 libparams-classify-perl_0.015-2+b1 libparams-util-perl_1.102-2+b1 libpcre2-16-0_10.42-4 libpcre2-32-0_10.42-4 libpcre2-8-0_10.42-4 libpcre2-dev_10.42-4 libpcre2-posix3_10.42-4 libpcre3_2:8.39-15 libperl5.36_5.36.0-9 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpkgconf3_1.8.1-1 libpng-dev_1.6.40-2 libpng16-16_1.6.40-2 libpsl5_0.21.2-1+b1 libreadline-dev_8.2-1.3 libreadline8_8.2-1.3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg1-3 libsasl2-modules-db_2.1.28+dfsg1-3 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol1_3.1-1 libsepol2_3.5-1 libsframe1_2.41-6+rpi1 libsharpyuv0_1.3.2-0.3 libsm6_2:1.2.3-1 libsmartcols1_2.39.2-4 libsqlite3-0_3.43.2-1 libss2_1.47.0-2 libssh2-1_1.11.0-2 libssl-dev_3.0.11-1 libssl1.1_1.1.1o-1 libssl3_3.0.11-1 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++6_13.2.0-4+rpi1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3 libsub-install-perl_0.929-1 libsub-name-perl_0.27-1 libsub-override-perl_0.09-4 libswitch-perl_2.17-3 libsystemd0_254.5-1+rpi1 libsz2_1.1.2-1 libtasn1-6_4.19.0-3 libtcl8.6_8.6.13+dfsg-2 libtext-glob-perl_0.11-3 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff6_4.5.1+git230720-1 libtimedate-perl_2.3300-2 libtinfo6_6.4+20231016-1 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.13-2 libtool_2.4.7-7 libtry-tiny-perl_0.31-2 libubsan1_13.2.0-4+rpi1 libuchardet0_0.0.7-1 libudev1_254.5-1+rpi1 libudunits2-0_2.2.28-7 libudunits2-data_2.2.28-7 libudunits2-dev_2.2.28-7 libunistring2_1.0-2 libunistring5_1.1-2 liburi-perl_5.21-1 libuuid1_2.39.2-4 libvariable-magic-perl_0.63-1+b1 libwebp7_1.3.2-0.3 libwww-curl-perl_4.17-10 libwww-curl-simple-perl_0.100191-3 libx11-6_2:1.8.7-1 libx11-data_2:1.8.7-1 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.3 libxml2-dev_2.9.14+dfsg-1.3 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1.1 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-1 linux-libc-dev_6.5.6-1+rpi1 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.11.2-3 mawk_1.3.4.20230808-1 mount_2.39.2-4 nano_7.2-1 ncurses-base_6.4+20231016-1 ncurses-bin_6.4+20231016-1 netbase_6.4 openssl_3.0.11-1 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-9 perl-base_5.36.0-9 perl-modules-5.36_5.36.0-9 pinentry-curses_1.2.1-1 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 r-base-core_4.3.1-4 r-base-dev_4.3.1-4 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-rnetcdf-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 sysvinit-utils_3.08-3 tar_1.34+dfsg-1.2 tzdata_2023c-10 ucf_3.0043+nmu1 unzip_6.0-28 usrmerge_37 util-linux_2.39.2-4 util-linux-extra_2.39.2-4 x11-common_1:7.7+23 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1 xz-utils_5.4.4-0.1 zip_3.0-13 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Mon Oct 23 12:15:36 2023 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-cran-rnetcdf_2.8-1-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-cran-rnetcdf in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-cran-rnetcdf_2.8-1.orig.tar.gz
dpkg-source: info: unpacking r-cran-rnetcdf_2.8-1-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-bd2b64a1-03b7-4da6-a3a5-176f1b403e46
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-cran-rnetcdf
dpkg-buildpackage: info: source version 2.8-1-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-cran-rnetcdf/ -a -O--buildsystem=R
I: R packages needed for DEP8: bit64
I: R Package: RNetCDF Version: 2.8-1
I: Building using R version 4.3.1-4
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Mon, 23 Oct 2023 14:10:49 +0200
mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-rnetcdf/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-rnetcdf/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 23 Oct 2023 14:10:49 +0200'"
* installing *source* package 'RNetCDF' ...
** package 'RNetCDF' successfully unpacked and MD5 sums checked
** using staged installation
configure: Find compiler/linker variables from environment:
checking CFLAGS... -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security
checking CPPFLAGS... -Wdate-time -D_FORTIFY_SOURCE=2
checking LDFLAGS... -Wl,-z,relro
checking LIBS...
configure: Select C compiler:
checking C compiler from --with-mpicc...
checking C compiler from R... gcc
configure: Find compiler/linker variables from R:
checking R_CFLAGS... -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2
checking R_CPPFLAGS...
checking R_LDFLAGS... -Wl,-z,relro
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for gcc options needed to detect all undeclared functions... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking whether _WIN32 is declared... no
checking whether __APPLE__ is declared... no
configure: Operating system is Unix-alike
checking for nc-config... yes
configure: Check compiler/linker variables from nc-config:
checking NC_CC... /usr/bin/cc
checking NC_CC matches selected C compiler... no ... specify --with-mpicc if needed
checking nc-config --cflags... -I/usr/include -I/usr/include/hdf5/serial
checking nc-config --libs ... -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lnetcdf
configure: Check compiler type sizes and language features
checking size of int... 4
checking size of long long... 8
checking size of size_t... 4
checking for C/C++ restrict keyword... __restrict__
configure: Check NetCDF features:
checking for netcdf.h... yes
checking for library containing nc_open... none required
checking for nc_rename_grp... yes
checking for nc_get_var_chunk_cache... yes
checking for nc_inq_var_szip... yes
checking for nc_inq_var_endian... yes
checking for nc_def_var_filter... yes
checking for nc_inq_var_filter_ids... yes
checking for nc_inq_var_filter_info... yes
checking for nc_reclaim_data... yes
checking for netcdf_filter.h... yes
checking whether NC_64BIT_DATA is declared... yes
checking whether NC_FORMAT_64BIT_DATA is declared... yes
checking whether NC_DISKLESS is declared... yes
checking whether NC_PERSIST is declared... yes
configure: Check for parallel NetCDF features:
checking for mpi.h... no
checking for MPI_Init... no
configure: WARNING: MPI not available. Specify --with-mpicc if needed.
configure: WARNING: NetCDF parallel I/O requires MPI
configure: Check for udunits2 features:
checking for library containing XML_ErrorString... no
checking for library containing ut_read_xml... -ludunits2
checking for ut_offset_by_time... yes
checking for ut_decode_time... yes
checking for ut_encode_time... yes
checking for udunits2.h... yes
configure: Final compiler and linker variables for make:
CC=gcc
PKG_CFLAGS=-I/usr/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security
PKG_CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2
PKG_LDFLAGS=-Wl,-z,relro
LIBS=-ludunits2 -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lnetcdf
configure: creating ./config.status
config.status: creating src/Makefile.common
config.status: creating R/config.R
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
WINDOWS="FALSE" \
MAKE="make" \
R_HOME="/usr/lib/R" \
R_ARCH="" \
/bin/bash ../tools/make-recursive.sh
make -f /usr/lib/R/etc//Makeconf -f /usr/share/R/share/make/shlib.mk -f Makefile.common OBJECTS= attribute.o common.o convert.o dataset.o dimension.o group.o init.o type.o udunits.o variable.o SHLIB=RNetCDF$(SHLIB_EXT) RNetCDF_all
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.8-1\" -DPACKAGE_STRING=\"RNetCDF\ 2.8-1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=4 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c attribute.c -o attribute.o
gcc -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.8-1\" -DPACKAGE_STRING=\"RNetCDF\ 2.8-1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=4 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c common.c -o common.o
gcc -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.8-1\" -DPACKAGE_STRING=\"RNetCDF\ 2.8-1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=4 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c convert.c -o convert.o
gcc -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.8-1\" -DPACKAGE_STRING=\"RNetCDF\ 2.8-1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=4 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c dataset.c -o dataset.o
gcc -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.8-1\" -DPACKAGE_STRING=\"RNetCDF\ 2.8-1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=4 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c dimension.c -o dimension.o
gcc -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.8-1\" -DPACKAGE_STRING=\"RNetCDF\ 2.8-1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=4 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c group.c -o group.o
gcc -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.8-1\" -DPACKAGE_STRING=\"RNetCDF\ 2.8-1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=4 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o
gcc -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.8-1\" -DPACKAGE_STRING=\"RNetCDF\ 2.8-1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=4 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c type.c -o type.o
gcc -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.8-1\" -DPACKAGE_STRING=\"RNetCDF\ 2.8-1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=4 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c udunits.c -o udunits.o
gcc -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"RNetCDF\" -DPACKAGE_TARNAME=\"rnetcdf\" -DPACKAGE_VERSION=\"2.8-1\" -DPACKAGE_STRING=\"RNetCDF\ 2.8-1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DECL__WIN32=0 -DHAVE_DECL___APPLE__=0 -DSIZEOF_INT=4 -DSIZEOF_LONG_LONG=8 -DSIZEOF_SIZE_T=4 -Drestrict=__restrict__ -DHAVE_NETCDF_H=1 -DHAVE_NC_RENAME_GRP=1 -DHAVE_NC_GET_VAR_CHUNK_CACHE=1 -DHAVE_NC_INQ_VAR_SZIP=1 -DHAVE_NC_INQ_VAR_ENDIAN=1 -DHAVE_NC_DEF_VAR_FILTER=1 -DHAVE_NC_INQ_VAR_FILTER_IDS=1 -DHAVE_NC_INQ_VAR_FILTER_INFO=1 -DHAVE_NC_RECLAIM_DATA=1 -DHAVE_NETCDF_FILTER_H=1 -DHAVE_DECL_NC_64BIT_DATA=1 -DHAVE_DECL_NC_FORMAT_64BIT_DATA=1 -DHAVE_DECL_NC_DISKLESS=1 -DHAVE_DECL_NC_PERSIST=1 -DHAVE_UDUNITS2_H=1 -DHAVE_LIBUDUNITS2=1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c variable.c -o variable.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o RNetCDF.so attribute.o common.o convert.o dataset.o dimension.o group.o init.o type.o udunits.o variable.o -Wl,-z,relro -ludunits2 -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lnetcdf -L/usr/lib/R/lib -lR
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-cran-rnetcdf/usr/lib/R/site-library/00LOCK-r-cran-rnetcdf-2.8-1/00new/RNetCDF/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: *** No rule to make target 'clean'. Stop.
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RNetCDF)
rm -f /<<PKGBUILDDIR>>/debian/r-cran-rnetcdf/usr/lib/R/site-library/RNetCDF/LICENSE
W: Ignoring specified R dependency: R (>= 3.0.0)
I: Using r-cran-bit64 for Recommends:bit64
I: Use r-cran-rnetcdf as Debian binary package for variables substitution
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
find debian -name LICENSE -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-rnetcdf' in '../r-cran-rnetcdf_2.8-1-1_armhf.deb'.
dpkg-deb: building package 'r-cran-rnetcdf-dbgsym' in '../r-cran-rnetcdf-dbgsym_2.8-1-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-cran-rnetcdf_2.8-1-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../r-cran-rnetcdf_2.8-1-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-10-25T05:17:31Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-rnetcdf_2.8-1-1_armhf.changes:
-------------------------------------
Format: 1.8
Date: Mon, 23 Oct 2023 14:10:49 +0200
Source: r-cran-rnetcdf
Binary: r-cran-rnetcdf r-cran-rnetcdf-dbgsym
Architecture: armhf
Version: 2.8-1-1
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-cran-rnetcdf - GNU R package that provides an R interface to NetCDF datasets
Changes:
r-cran-rnetcdf (2.8-1-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
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fa537309d9019b75267b282ccaa50f4d41dd5312a07e5ec49152e1992d5e208f 225888 r-cran-rnetcdf_2.8-1-1_armhf.deb
Files:
6fd40f7f1b99b61d1b8a2e135034f46c 27584 debug optional r-cran-rnetcdf-dbgsym_2.8-1-1_armhf.deb
d72e667d3631f51b82514f85798c8563 10349 gnu-r optional r-cran-rnetcdf_2.8-1-1_armhf.buildinfo
d7cbd98e1b62335a84ff29e9dc42e3d4 225888 gnu-r optional r-cran-rnetcdf_2.8-1-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-rnetcdf-dbgsym_2.8-1-1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 27584 bytes: control archive=536 bytes.
391 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-rnetcdf-dbgsym
Source: r-cran-rnetcdf
Version: 2.8-1-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 50
Depends: r-cran-rnetcdf (= 2.8-1-1)
Section: debug
Priority: optional
Description: debug symbols for r-cran-rnetcdf
Build-Ids: 369ebfda4ab8100e09d01d3c2cd1f7c8dcc9ea2b
drwxr-xr-x root/root 0 2023-10-23 12:10 ./
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/lib/
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/lib/debug/.build-id/36/
-rw-r--r-- root/root 40156 2023-10-23 12:10 ./usr/lib/debug/.build-id/36/9ebfda4ab8100e09d01d3c2cd1f7c8dcc9ea2b.debug
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/share/
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-10-23 12:10 ./usr/share/doc/r-cran-rnetcdf-dbgsym -> r-cran-rnetcdf
r-cran-rnetcdf_2.8-1-1_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 225888 bytes: control archive=1600 bytes.
741 bytes, 16 lines control
2479 bytes, 31 lines md5sums
Package: r-cran-rnetcdf
Version: 2.8-1-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 347
Depends: r-api-4.0, libc6 (>= 2.4), libnetcdf19 (>= 4.9.0), libudunits2-0 (>= 2.2.14)
Recommends: r-cran-bit64
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=RNetCDF
Description: GNU R package that provides an R interface to NetCDF datasets
This package provides an R interface to Unidata's NetCDF library
functions. NetCDF (network Common Data Form) is a set of interfaces
for array-oriented data access. In addition to the interface to the
NetCDF library functions, R interfaces are provided to access
Unidata's UDUNITS calendar conversions.
drwxr-xr-x root/root 0 2023-10-23 12:10 ./
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/lib/
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/lib/R/
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/
-rw-r--r-- root/root 1291 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/DESCRIPTION
-rw-r--r-- root/root 1777 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/INDEX
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/Meta/
-rw-r--r-- root/root 1057 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/Meta/Rd.rds
-rw-r--r-- root/root 172 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/Meta/demo.rds
-rw-r--r-- root/root 132 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/Meta/features.rds
-rw-r--r-- root/root 950 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/Meta/hsearch.rds
-rw-r--r-- root/root 454 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/Meta/links.rds
-rw-r--r-- root/root 314 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/Meta/nsInfo.rds
-rw-r--r-- root/root 1124 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/Meta/package.rds
-rw-r--r-- root/root 74 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/NAMESPACE
-rw-r--r-- root/root 5831 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/NEWS
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/R/
-rw-r--r-- root/root 1058 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/R/RNetCDF
-rw-r--r-- root/root 44698 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/R/RNetCDF.rdb
-rw-r--r-- root/root 682 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/R/RNetCDF.rdx
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/demo/
-rw-r--r-- root/root 1856 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/demo/Rmpi_writeN_read1.R
-rw-r--r-- root/root 1829 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/demo/pbdMPI_writeN_read1.R
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/help/
-rw-r--r-- root/root 730 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/help/AnIndex
-rw-r--r-- root/root 117655 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/help/RNetCDF.rdb
-rw-r--r-- root/root 794 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/help/RNetCDF.rdx
-rw-r--r-- root/root 294 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/help/aliases.rds
-rw-r--r-- root/root 345 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/help/paths.rds
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/html/
-rw-r--r-- root/root 4958 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/html/00Index.html
-rw-r--r-- root/root 1844 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/html/R.css
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/libs/
-rw-r--r-- root/root 104552 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/libs/RNetCDF.so
-rw-r--r-- root/root 3015 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/libs/symbols.rds
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/udunits/
-rw-r--r-- root/root 7754 2023-10-23 12:10 ./usr/lib/R/site-library/RNetCDF/udunits/udunits2.xml
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/share/
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/share/doc/r-cran-rnetcdf/
-rw-r--r-- root/root 279 2023-10-23 12:10 ./usr/share/doc/r-cran-rnetcdf/README.test
-rw-r--r-- root/root 683 2023-10-23 12:10 ./usr/share/doc/r-cran-rnetcdf/changelog.Debian.gz
-rw-r--r-- root/root 4025 2023-10-23 12:10 ./usr/share/doc/r-cran-rnetcdf/copyright
-rw-r--r-- root/root 435 2023-10-23 12:10 ./usr/share/doc/r-cran-rnetcdf/run-unit-test
drwxr-xr-x root/root 0 2023-10-23 12:10 ./usr/share/doc/r-cran-rnetcdf/tests/
-rw-r--r-- root/root 10336 2023-10-21 06:20 ./usr/share/doc/r-cran-rnetcdf/tests/RNetCDF-test.R.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 2052
Build-Time: 49
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 419
Job: r-cran-rnetcdf_2.8-1-1
Machine Architecture: armhf
Package: r-cran-rnetcdf
Package-Time: 485
Source-Version: 2.8-1-1
Space: 2052
Status: successful
Version: 2.8-1-1
--------------------------------------------------------------------------------
Finished at 2023-10-25T05:17:31Z
Build needed 00:08:05, 2052k disk space