r-cran-qtl →
1.47-9-1 →
armhf → 2021-01-19 05:58:53
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| r-cran-qtl 1.47-9-1 (armhf) Tue, 19 Jan 2021 05:42:56 +0000 |
+==============================================================================+
Package: r-cran-qtl
Version: 1.47-9-1
Source Version: 1.47-9-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-74ca2425-be55-4d2e-8569-0c888651f83b' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-cran-qtl-GAKbAr/resolver-A7m4HT' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.1 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.1 MB]
Fetched 25.2 MB in 12s (2123 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-qtl' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-qtl.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-qtl.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 4393 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main r-cran-qtl 1.47-9-1 (dsc) [2102 B]
Get:2 http://172.17.0.1/private bullseye-staging/main r-cran-qtl 1.47-9-1 (tar) [4384 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main r-cran-qtl 1.47-9-1 (diff) [6964 B]
Fetched 4393 kB in 2s (2821 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-qtl-GAKbAr/r-cran-qtl-1.47-9' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-qtl-GAKbAr' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [381 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [464 B]
Fetched 1802 B in 0s (45.8 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
cpp-10 dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core g++-10 gcc-10
gcc-10-base gettext gettext-base gfortran gfortran-10 groff-base
icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl
libasan6 libatomic1 libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcc1-0
libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls
libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgcc-10-dev libgcc-s1 libgfortran-10-dev
libgfortran5 libglib2.0-0 libgnutls30 libgomp1 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev liblzma5
libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libncursesw6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libstdc++-10-dev
libstdc++6 libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5
libtimedate-perl libtinfo6 libtk8.6 libtool libtry-tiny-perl libubsan1
libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl pkg-config po-debconf r-base-core
r-base-dev sensible-utils ucf unzip x11-common xauth xdg-utils zip
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-10-locales debtags dh-make
gcc-10-doc gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc
gfortran-10-doc libcoarrays-dev groff liblapack-doc gnutls-bin icu-doc
liblzma-doc ncurses-doc libscalar-number-perl readline-doc libstdc++-10-doc
tcl8.6 tk8.6 libtool-doc gcj-jdk libwww-perl libcurl4-gnutls-dev m4-doc
apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf
r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libclass-c3-xs-perl
libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libclone-perl libdevel-partialdump-perl libgpm2 libpng-tools
publicsuffix libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-10 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2
libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls
libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-10-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl pkg-config po-debconf r-base-core
r-base-dev sbuild-build-depends-main-dummy sensible-utils ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp-10 g++-10 gcc-10 gcc-10-base libasan6 libatomic1 libcc1-0 libgcc-10-dev
libgcc-s1 libgnutls30 libgomp1 liblzma5 libncursesw6 libstdc++-10-dev
libstdc++6 libtinfo6 libubsan1
17 upgraded, 167 newly installed, 0 to remove and 43 not upgraded.
Need to get 119 MB of archives.
After this operation, 99.1 MB disk space will be freed.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [888 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf bsdextrautils armhf 2.36.1-5 [137 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10.2.1-3+rpi1 [746 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10.2.1-3+rpi1 [201 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10.2.1-3+rpi1 [36.0 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10.2.1-3+rpi1 [83.7 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10.2.1-3+rpi1 [8212 B]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libasan6 armhf 10.2.1-3+rpi1 [1986 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf cpp-10 armhf 10.2.1-3+rpi1 [6687 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10.2.1-3+rpi1 [38.3 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf g++-10 armhf 10.2.1-3+rpi1 [7337 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf gcc-10 armhf 10.2.1-3+rpi1 [13.4 MB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libgcc-10-dev armhf 10.2.1-3+rpi1 [683 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libstdc++-10-dev armhf 10.2.1-3+rpi1 [1752 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10.2.1-3+rpi1 [409 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libgnutls30 armhf 3.7.0-5 [1275 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf liblzma5 armhf 5.2.5-1.0 [158 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libtinfo6 armhf 6.2+20201114-2 [328 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libncursesw6 armhf 6.2+20201114-2 [105 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.21-3 [170 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-3 [32.4 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.21-3 [509 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1i-1 [813 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20200601 [158 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.3.1 [188 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-3 [162 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13+20201015-2 [162 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-6 [8289 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.21-3 [1214 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.3.1 [1010 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf unzip armhf 6.0-26 [151 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf xdg-utils all 1.1.3-2 [74.6 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [353 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2.1 [136 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.7.0-2 [310 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.7.0-2 [706 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.14-2.1 [110 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.14-2.1 [101 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.42.0-1 [66.7 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.9.0-2 [141 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.74.0-1 [305 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.4-1 [1182 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-2 [120 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.1-3+rpi1 [231 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.7-1 [1366 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3+b5 [36.5 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.46.2-3 [172 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.46.2-3 [55.7 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.46.2-3 [46.7 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.11+dfsg-1 [894 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.7-1 [44.0 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.2.0-1 [268 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+21 [252 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.11-1 [681 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf r-base-core armhf 4.0.3-1 [24.7 MB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-10-dev armhf 10.2.1-3+rpi1 [278 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf gfortran-10 armhf 10.2.1-3+rpi1 [7193 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:10.2.0-1+rpi1 [1428 B]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2+20201114-2 [79.9 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libncurses-dev armhf 6.2+20201114-2 [288 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libncurses5-dev armhf 6.2+20201114-2 [936 B]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libreadline-dev armhf 8.1-1 [121 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.5-2 [239 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev armhf 1:2.0.5-2 [66.2 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.36-2 [197 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.36-2 [187 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix2 armhf 10.36-2 [48.7 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.36-2 [626 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.5-1.0 [219 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 67.1-6 [172 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 67.1-6 [9229 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf xauth armhf 1:1.1-1 [36.6 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf r-base-dev all 4.0.3-1 [4484 B]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf libswitch-perl all 2.17-2.1 [20.0 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf libtimedate-perl all 2.3300-1 [39.2 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf libio-html-perl all 1.001-1.1 [18.6 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf liburi-perl all 5.06-1 [90.3 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf libhttp-message-perl all 6.27-1 [79.5 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf libdata-optlist-perl all 0.110-1.1 [10.8 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf libpackage-stash-perl all 0.39-1 [21.9 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b4 [14.3 kB]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf libmro-compat-perl all 0.13-1 [12.2 kB]
Get:167 http://172.17.0.1/private bullseye-staging/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB]
Get:168 http://172.17.0.1/private bullseye-staging/main armhf libdevel-overloadinfo-perl all 0.005-1 [7212 B]
Get:169 http://172.17.0.1/private bullseye-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:170 http://172.17.0.1/private bullseye-staging/main armhf libsub-exporter-perl all 0.987-1 [47.2 kB]
Get:171 http://172.17.0.1/private bullseye-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:172 http://172.17.0.1/private bullseye-staging/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get:173 http://172.17.0.1/private bullseye-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get:174 http://172.17.0.1/private bullseye-staging/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB]
Get:175 http://172.17.0.1/private bullseye-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get:176 http://172.17.0.1/private bullseye-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.5 kB]
Get:177 http://172.17.0.1/private bullseye-staging/main armhf libmoose-perl armhf 2.2014-2 [802 kB]
Get:178 http://172.17.0.1/private bullseye-staging/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB]
Get:179 http://172.17.0.1/private bullseye-staging/main armhf libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB]
Get:180 http://172.17.0.1/private bullseye-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:181 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.74.0-1 [301 kB]
Get:182 http://172.17.0.1/private bullseye-staging/main armhf libwww-curl-perl armhf 4.17-7+b1 [58.9 kB]
Get:183 http://172.17.0.1/private bullseye-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:184 http://172.17.0.1/private bullseye-staging/main armhf dh-r all 20201129 [41.0 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking liblzma5:armhf (5.2.5-1.0) over (5.2.4-1) ...
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Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.2.10-1) ...
Setting up libpcrecpp0v5:armhf (2:8.39-13) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up libpixman-1-0:armhf (0.40.0-1) ...
Setting up libfile-which-perl (1.23-1) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up libpsl5:armhf (0.21.0-1.1) ...
Setting up bsdextrautils (2.36.1-5) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libpcre16-3:armhf (2:8.39-13) ...
Setting up libicu67:armhf (67.1-6) ...
Setting up libdynaloader-functions-perl (0.003-1.1) ...
Setting up libdatrie1:armhf (0.2.12-3+b5) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-1+b3) ...
Setting up libglib2.0-0:armhf (2.66.4-1) ...
No schema files found: doing nothing.
Setting up unzip (6.0-26) ...
Setting up libdebhelper-perl (13.3.1) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up liblwp-mediatypes-perl (6.04-1) ...
Setting up x11-common (1:7.7+21) ...
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libtry-tiny-perl (0.30-1) ...
Setting up libnghttp2-14:armhf (1.42.0-1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up libdeflate0:armhf (1.7-1) ...
Setting up gettext-base (0.21-3) ...
Setting up libencode-locale-perl (1.05-1.1) ...
Setting up file (1:5.39-3) ...
Setting up libgomp1:armhf (10.2.1-3+rpi1) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libpcre2-16-0:armhf (10.36-2) ...
Setting up libsub-install-perl (0.928-1.1) ...
Setting up libasan6:armhf (10.2.1-3+rpi1) ...
Setting up zip (3.0-11) ...
Setting up libpackage-stash-xs-perl (0.29-1+b2) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libpcre2-32-0:armhf (10.36-2) ...
Setting up libblas3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libalgorithm-c3-perl (0.11-1) ...
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Setting up libswitch-perl (2.17-2.1) ...
Setting up libx11-data (2:1.7.0-2) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.0.5-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.2+20201114-2) ...
Setting up libsigsegv2:armhf (2.12-3) ...
Setting up libfribidi0:armhf (1.0.8-2) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
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Setting up libatomic1:armhf (10.2.1-3+rpi1) ...
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Setting up pkg-config (0.29.2-1) ...
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Setting up libparams-util-perl (1.102-1+b1) ...
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Setting up libubsan1:armhf (10.2.1-3+rpi1) ...
Setting up libsub-name-perl (0.26-1+b1) ...
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Setting up libuchardet0:armhf (0.0.7-1) ...
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Setting up libtiff5:armhf (4.2.0-1) ...
Setting up openssl (1.1.1i-1) ...
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Setting up xdg-utils (1.1.3-2) ...
Setting up libcc1-0:armhf (10.2.1-3+rpi1) ...
Setting up liburi-perl (5.06-1) ...
Setting up cpp-10 (10.2.1-3+rpi1) ...
Setting up libblas-dev:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
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Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.2+20201114-2) ...
Setting up libxcb1:armhf (1.14-2.1) ...
Setting up gettext (0.21-3) ...
Setting up libpcre2-dev:armhf (10.36-2) ...
Setting up libtool (2.4.6-15) ...
Setting up libxcb-render0:armhf (1.14-2.1) ...
Setting up libpcre3-dev:armhf (2:8.39-13) ...
Setting up libgcc-10-dev:armhf (10.2.1-3+rpi1) ...
Setting up libpng-dev:armhf (1.6.37-3) ...
Setting up libjpeg-dev:armhf (1:2.0.5-2) ...
Setting up m4 (1.4.18-5) ...
Setting up libcurl3-gnutls:armhf (7.74.0-1) ...
Setting up libxcb-shm0:armhf (1.14-2.1) ...
Setting up libclass-c3-perl (0.35-1) ...
Setting up libreadline-dev:armhf (8.1-1) ...
Setting up libdevel-callchecker-perl (0.008-1+b2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libthai0:armhf (0.1.28-3) ...
Setting up ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
126 added, 0 removed; done.
Setting up libfreetype6:armhf (2.10.4+dfsg-1) ...
Setting up liblapack-dev:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.110-1.1) ...
Setting up ucf (3.0043) ...
Setting up gcc-10 (10.2.1-3+rpi1) ...
Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up dwz (0.13+20201015-2) ...
Setting up groff-base (1.22.4-5) ...
Setting up libncurses5-dev:armhf (6.2+20201114-2) ...
Setting up libcurl4:armhf (7.74.0-1) ...
Setting up libx11-6:armhf (2:1.7.0-2) ...
Setting up libharfbuzz0b:armhf (2.6.7-1) ...
Setting up libgfortran-10-dev:armhf (10.2.1-3+rpi1) ...
Setting up libmro-compat-perl (0.13-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2+b3) ...
Setting up libsub-exporter-perl (0.987-1) ...
Setting up libhttp-message-perl (6.27-1) ...
Setting up libeval-closure-perl (0.14-1) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up libstdc++-10-dev:armhf (10.2.1-3+rpi1) ...
Setting up g++-10 (10.2.1-3+rpi1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
Setting up libxext6:armhf (2:1.3.3-1.1) ...
Setting up libwww-curl-perl (4.17-7+b1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up gfortran-10 (10.2.1-3+rpi1) ...
Setting up libdist-checkconflicts-perl (0.11-1.1) ...
Setting up libxt6:armhf (1:1.2.0-1) ...
Setting up xauth (1:1.1-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up libmodule-implementation-perl (0.09-1.1) ...
Setting up libpackage-stash-perl (0.39-1) ...
Setting up libtk8.6:armhf (8.6.11-1) ...
Setting up libpango-1.0-0:armhf (1.46.2-3) ...
Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ...
Setting up gfortran (4:10.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up libpackage-deprecationmanager-perl (0.17-1.1) ...
Setting up libdevel-overloadinfo-perl (0.005-1) ...
Setting up libclass-load-xs-perl (0.10-1+b4) ...
Setting up libpangoft2-1.0-0:armhf (1.46.2-3) ...
Setting up libb-hooks-endofscope-perl (0.24-1.1) ...
Setting up libpangocairo-1.0-0:armhf (1.46.2-3) ...
Setting up libmoose-perl (2.2014-2) ...
Setting up r-base-core (4.0.3-1) ...
Creating config file /etc/R/Renviron with new version
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up r-base-dev (4.0.3-1) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.3.1) ...
Setting up dh-r (20201129) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-6+rpi1) ...
Processing triggers for ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.35.1-6+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.1-3+rpi1 gcc-10_10.2.1-3+rpi1 libc6-dev_2.31-6+rpi1 libstdc++-10-dev_10.2.1-3+rpi1 libstdc++6_10.2.1-3+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1
Package versions: adduser_3.118 apt_2.1.12+deb11u1 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-3 autotools-dev_20180224.1+nmu1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1-1 binutils_2.35.1-6+rpi1 binutils-arm-linux-gnueabihf_2.35.1-6+rpi1 binutils-common_2.35.1-6+rpi1 bsdextrautils_2.36.1-5 bsdutils_1:2.36.1-3 build-essential_12.8 bzip2_1.0.8-4 ca-certificates_20200601 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.1-3+rpi1 dash_0.5.11+git20200708+dd9ef66-5 dctrl-tools_2.24-3 debconf_1.5.74 debhelper_13.3.1 debianutils_4.11.2 dh-autoreconf_19 dh-r_20201129 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13+20201015-2 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.7.0+git20201010-2 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.2.0-1+rpi1 g++-10_10.2.1-3+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.1-3+rpi1 gcc-10-base_10.2.1-3+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-5+rpi1 gcc-9-base_9.3.0-19+rpi1 gettext_0.21-3 gettext-base_0.21-3 gfortran_4:10.2.0-1+rpi1 gfortran-10_10.2.1-3+rpi1 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 icu-devtools_67.1-6 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-9 libalgorithm-c3-perl_0.11-1 libapt-pkg6.0_2.1.12+deb11u1 libarchive-zip-perl_1.68-1 libasan6_10.2.1-3+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-3+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-1 libaudit1_1:3.0-1 libb-hooks-endofscope-perl_0.24-1.1 libb-hooks-op-check-perl_0.22-1+b4 libbinutils_2.35.1-6+rpi1 libblas-dev_3.9.0-3 libblas3_3.9.0-3 libblkid1_2.36.1-3 libbrotli1_1.0.9-2+b1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.31-6+rpi1 libc-dev-bin_2.31-6+rpi1 libc6_2.31-6+rpi1 libc6-dev_2.31-6+rpi1 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ncurses-bin_6.2+20201114-1 openssl_1.1.1i-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-6 perl-base_5.32.0-6 perl-modules-5.32_5.32.0-6 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 r-base-core_4.0.3-1 r-base-dev_4.0.3-1 raspbian-archive-keyring_20120528.2 readline-common_8.1-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-5 tar_1.32+dfsg-1+rpi1 tzdata_2020e-1 ucf_3.0043 unzip_6.0-26 util-linux_2.36.1-3 x11-common_1:7.7+21 xauth_1:1.1-1 xdg-utils_1.1.3-2 xz-utils_5.2.4-1 zip_3.0-11 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: r-cran-qtl
Binary: r-cran-qtl
Architecture: any
Version: 1.47-9-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Steffen Moeller <moeller@debian.org>, Andreas Tille <tille@debian.org>
Homepage: https://cran.r-project.org/package=qtl
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-cran-qtl
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-cran-qtl.git
Testsuite: autopkgtest, autopkgtest-pkg-r
Testsuite-Triggers: r-cran-testthat
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev
Package-List:
r-cran-qtl deb gnu-r optional arch=any
Checksums-Sha1:
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392e8a1bee1d98150183740d85b4495e9f4e231b 6964 r-cran-qtl_1.47-9-1.debian.tar.xz
Checksums-Sha256:
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Files:
0e9dd931b5deb19e06efd495c1f89afd 4384057 r-cran-qtl_1.47-9.orig.tar.gz
508fc1188d4c08491a829186054e7c88 6964 r-cran-qtl_1.47-9-1.debian.tar.xz
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.RxVileQD/trustedkeys.kbx': General error
gpgv: Signature made Sat Jan 16 14:00:22 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-cran-qtl_1.47-9-1.dsc
dpkg-source: info: extracting r-cran-qtl in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-cran-qtl_1.47-9.orig.tar.gz
dpkg-source: info: unpacking r-cran-qtl_1.47-9-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/build/buildd
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-74ca2425-be55-4d2e-8569-0c888651f83b
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c37353
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-cran-qtl
dpkg-buildpackage: info: source version 1.47-9-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R packages needed for DEP8: testthat
I: R Package: qtl Version: 1.47-9
I: Building using R version 4.0.3-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Sat, 16 Jan 2021 14:55:46 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-qtl/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-qtl/usr/lib/R/site-library --clean . "--built-timestamp='Sat, 16 Jan 2021 14:55:46 +0100'"
* installing *source* package ‘qtl’ ...
** package ‘qtl’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init.c -o R_init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c countXO.c -o countXO.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c discan.c -o discan.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c discan_covar.c -o discan_covar.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c effectscan.c -o effectscan.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fill_geno_nodblXO.c -o fill_geno_nodblXO.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c findDupMarkers_notexact.c -o findDupMarkers_notexact.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fitqtl_hk.c -o fitqtl_hk.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fitqtl_hk_binary.c -o fitqtl_hk_binary.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fitqtl_imp.c -o fitqtl_imp.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fitqtl_imp_binary.c -o fitqtl_imp_binary.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c forwsel.c -o forwsel.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_4way.c -o hmm_4way.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_bc.c -o hmm_bc.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_bci.c -o hmm_bci.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_bcsft.c -o hmm_bcsft.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_bgmagic16.c -o hmm_bgmagic16.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_f2.c -o hmm_f2.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_f2i.c -o hmm_f2i.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_main.c -o hmm_main.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_ri4self.c -o hmm_ri4self.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_ri4sib.c -o hmm_ri4sib.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_ri8self.c -o hmm_ri8self.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_ri8selfIRIP1.c -o hmm_ri8selfIRIP1.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_ri8sib.c -o hmm_ri8sib.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_util.c -o hmm_util.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inferFounderHap.c -o inferFounderHap.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c info.c -o info.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lapackutil.c -o lapackutil.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c markerlrt.c -o markerlrt.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmaugment.cpp -o mqmaugment.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmdatatypes.cpp -o mqmdatatypes.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmeliminate.cpp -o mqmeliminate.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmmapqtl.cpp -o mqmmapqtl.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmmixture.cpp -o mqmmixture.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmprob.cpp -o mqmprob.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmregression.cpp -o mqmregression.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmscan.cpp -o mqmscan.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pickMarkerSubset.c -o pickMarkerSubset.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ril48_reorg.c -o ril48_reorg.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ripple.c -o ripple.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_ehk.c -o scanone_ehk.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_em.c -o scanone_em.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_em_covar.c -o scanone_em_covar.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_hk.c -o scanone_hk.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_hk_binary.c -o scanone_hk_binary.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_imp.c -o scanone_imp.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_mr.c -o scanone_mr.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_np.c -o scanone_np.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_binary_em.c -o scantwo_binary_em.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_binary_hk.c -o scantwo_binary_hk.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_em.c -o scantwo_em.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_hk.c -o scantwo_hk.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_imp.c -o scantwo_imp.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_mr.c -o scantwo_mr.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwopermhk.c -o scantwopermhk.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c simulate.c -o simulate.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c simulate_ril.c -o simulate_ril.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stahl_mf.c -o stahl_mf.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c summary_scantwo.c -o summary_scantwo.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test_bcsft.c -o test_bcsft.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vbscan.c -o vbscan.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c zeroin.c -o zeroin.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o qtl.so R_init.o countXO.o discan.o discan_covar.o effectscan.o fill_geno_nodblXO.o findDupMarkers_notexact.o fitqtl_hk.o fitqtl_hk_binary.o fitqtl_imp.o fitqtl_imp_binary.o forwsel.o hmm_4way.o hmm_bc.o hmm_bci.o hmm_bcsft.o hmm_bgmagic16.o hmm_f2.o hmm_f2i.o hmm_main.o hmm_ri4self.o hmm_ri4sib.o hmm_ri8self.o hmm_ri8selfIRIP1.o hmm_ri8sib.o hmm_util.o inferFounderHap.o info.o lapackutil.o markerlrt.o mqmaugment.o mqmdatatypes.o mqmeliminate.o mqmmapqtl.o mqmmixture.o mqmprob.o mqmregression.o mqmscan.o pickMarkerSubset.o ril48_reorg.o ripple.o scanone_ehk.o scanone_em.o scanone_em_covar.o scanone_hk.o scanone_hk_binary.o scanone_imp.o scanone_mr.o scanone_np.o scantwo_binary_em.o scantwo_binary_hk.o scantwo_em.o scantwo_hk.o scantwo_imp.o scantwo_mr.o scantwopermhk.o simulate.o simulate_ril.o stahl_mf.o summary_scantwo.o test_bcsft.o util.o vbscan.o zeroin.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-cran-qtl/usr/lib/R/site-library/00LOCK-r-cran-qtl-1.47-9/00new/qtl/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (qtl)
W: Ignoring specified R dependency: R (>= 2.14.0)
I: Using r-cran-testthat for Recommends:testthat
I: Use r-cran-qtl as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
find debian -name create-diff.sh -exec chmod +x \{\} \;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_missing -a -O--buildsystem=R
dh_dwz -a -a -O--buildsystem=R
dh_strip -a -a -O--buildsystem=R
dh_makeshlibs -a -a -O--buildsystem=R
dh_shlibdeps -a -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-qtl' in '../r-cran-qtl_1.47-9-1_armhf.deb'.
dpkg-deb: building package 'r-cran-qtl-dbgsym' in '../r-cran-qtl-dbgsym_1.47-9-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> >../r-cran-qtl_1.47-9-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-01-19T05:58:47Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-qtl_1.47-9-1_armhf.changes:
----------------------------------
Format: 1.8
Date: Sat, 16 Jan 2021 14:55:46 +0100
Source: r-cran-qtl
Binary: r-cran-qtl r-cran-qtl-dbgsym
Architecture: armhf
Version: 1.47-9-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-cran-qtl - GNU R package for genetic marker linkage analysis
Changes:
r-cran-qtl (1.47-9-1) unstable; urgency=medium
.
* New upstream version
* Standards-Version: 4.5.1 (routine-update)
* debhelper-compat 13 (routine-update)
* Testsuite: autopkgtest-pkg-r (routine-update)
* Depends: ruby
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: r-cran-qtl
Binary: r-cran-qtl r-cran-qtl-dbgsym
Architecture: armhf
Version: 1.47-9-1
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Tue, 19 Jan 2021 05:58:46 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.69-14),
automake (= 1:1.16.3-2),
autopoint (= 0.21-3),
autotools-dev (= 20180224.1+nmu1),
base-files (= 11+rpi1),
base-passwd (= 3.5.48),
bash (= 5.1-1),
binutils (= 2.35.1-6+rpi1),
binutils-arm-linux-gnueabihf (= 2.35.1-6+rpi1),
binutils-common (= 2.35.1-6+rpi1),
bsdextrautils (= 2.36.1-5),
bsdutils (= 1:2.36.1-3),
build-essential (= 12.8),
bzip2 (= 1.0.8-4),
ca-certificates (= 20200601),
coreutils (= 8.32-4),
cpp (= 4:10.2.0-1+rpi1),
cpp-10 (= 10.2.1-3+rpi1),
dash (= 0.5.11+git20200708+dd9ef66-5),
dctrl-tools (= 2.24-3),
debconf (= 1.5.74),
debhelper (= 13.3.1),
debianutils (= 4.11.2),
dh-autoreconf (= 19),
dh-r (= 20201129),
dh-strip-nondeterminism (= 1.9.0-1),
diffutils (= 1:3.7-3),
dpkg (= 1.20.5+rpi1),
dpkg-dev (= 1.20.5+rpi1),
dwz (= 0.13+20201015-2),
file (= 1:5.39-3),
findutils (= 4.7.0+git20201010-2),
fontconfig (= 2.13.1-4.2),
fontconfig-config (= 2.13.1-4.2),
fonts-dejavu-core (= 2.37-2),
g++ (= 4:10.2.0-1+rpi1),
g++-10 (= 10.2.1-3+rpi1),
gcc (= 4:10.2.0-1+rpi1),
gcc-10 (= 10.2.1-3+rpi1),
gcc-10-base (= 10.2.1-3+rpi1),
gettext (= 0.21-3),
gettext-base (= 0.21-3),
gfortran (= 4:10.2.0-1+rpi1),
gfortran-10 (= 10.2.1-3+rpi1),
grep (= 3.6-1),
groff-base (= 1.22.4-5),
gzip (= 1.10-2),
hostname (= 3.23),
icu-devtools (= 67.1-6),
init-system-helpers (= 1.60),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.2.53-9),
libalgorithm-c3-perl (= 0.11-1),
libarchive-zip-perl (= 1.68-1),
libasan6 (= 10.2.1-3+rpi1),
libatomic1 (= 10.2.1-3+rpi1),
libattr1 (= 1:2.4.48-6),
libaudit-common (= 1:3.0-1),
libaudit1 (= 1:3.0-1),
libb-hooks-endofscope-perl (= 0.24-1.1),
libb-hooks-op-check-perl (= 0.22-1+b4),
libbinutils (= 2.35.1-6+rpi1),
libblas-dev (= 3.9.0-3),
libblas3 (= 3.9.0-3),
libblkid1 (= 2.36.1-3),
libbrotli1 (= 1.0.9-2+b1),
libbsd0 (= 0.10.0-1),
libbz2-1.0 (= 1.0.8-4),
libbz2-dev (= 1.0.8-4),
libc-bin (= 2.31-6+rpi1),
libc-dev-bin (= 2.31-6+rpi1),
libc6 (= 2.31-6+rpi1),
libc6-dev (= 2.31-6+rpi1),
libcairo2 (= 1.16.0-5),
libcap-ng0 (= 0.7.9-2.2+b1),
libcc1-0 (= 10.2.1-3+rpi1),
libclass-c3-perl (= 0.35-1),
libclass-load-perl (= 0.25-1),
libclass-load-xs-perl (= 0.10-1+b4),
libcom-err2 (= 1.45.6-1),
libcrypt-dev (= 1:4.4.17-1),
libcrypt1 (= 1:4.4.17-1),
libctf-nobfd0 (= 2.35.1-6+rpi1),
libctf0 (= 2.35.1-6+rpi1),
libcurl3-gnutls (= 7.74.0-1),
libcurl4 (= 7.74.0-1),
libdata-optlist-perl (= 0.110-1.1),
libdatrie1 (= 0.2.12-3+b5),
libdb5.3 (= 5.3.28+dfsg1-0.6),
libdebconfclient0 (= 0.255+b1),
libdebhelper-perl (= 13.3.1),
libdeflate0 (= 1.7-1),
libdevel-callchecker-perl (= 0.008-1+b2),
libdevel-globaldestruction-perl (= 0.14-1.1),
libdevel-overloadinfo-perl (= 0.005-1),
libdevel-stacktrace-perl (= 2.0400-1),
libdist-checkconflicts-perl (= 0.11-1.1),
libdpkg-perl (= 1.20.5+rpi1),
libdynaloader-functions-perl (= 0.003-1.1),
libelf1 (= 0.182-3),
libencode-locale-perl (= 1.05-1.1),
libeval-closure-perl (= 0.14-1),
libexpat1 (= 2.2.10-1),
libffi7 (= 3.3-5),
libfile-stripnondeterminism-perl (= 1.9.0-1),
libfile-which-perl (= 1.23-1),
libfontconfig1 (= 2.13.1-4.2),
libfreetype6 (= 2.10.4+dfsg-1),
libfribidi0 (= 1.0.8-2),
libgcc-10-dev (= 10.2.1-3+rpi1),
libgcc-s1 (= 10.2.1-3+rpi1),
libgcrypt20 (= 1.8.7-2),
libgdbm-compat4 (= 1.18.1-5.1),
libgdbm6 (= 1.18.1-5.1),
libgfortran-10-dev (= 10.2.1-3+rpi1),
libgfortran5 (= 10.2.1-3+rpi1),
libglib2.0-0 (= 2.66.4-1),
libgmp10 (= 2:6.2.1+dfsg-1),
libgnutls30 (= 3.7.0-5),
libgomp1 (= 10.2.1-3+rpi1),
libgpg-error0 (= 1.38-2),
libgraphite2-3 (= 1.3.14-1),
libgssapi-krb5-2 (= 1.18.3-4),
libharfbuzz0b (= 2.6.7-1),
libhogweed6 (= 3.6-2),
libhttp-date-perl (= 6.05-1),
libhttp-message-perl (= 6.27-1),
libice6 (= 2:1.0.10-1),
libicu-dev (= 67.1-6),
libicu67 (= 67.1-6),
libidn2-0 (= 2.3.0-4),
libio-html-perl (= 1.001-1.1),
libisl23 (= 0.23-1),
libjbig0 (= 2.1-3.1+b2),
libjpeg-dev (= 1:2.0.5-2),
libjpeg62-turbo (= 1:2.0.5-2),
libjpeg62-turbo-dev (= 1:2.0.5-2),
libk5crypto3 (= 1.18.3-4),
libkeyutils1 (= 1.6.1-2),
libkrb5-3 (= 1.18.3-4),
libkrb5support0 (= 1.18.3-4),
liblapack-dev (= 3.9.0-3),
liblapack3 (= 3.9.0-3),
libldap-2.4-2 (= 2.4.56+dfsg-1+rpi1+b1),
liblwp-mediatypes-perl (= 6.04-1),
liblz4-1 (= 1.9.3-1+rpi1),
liblzma-dev (= 5.2.5-1.0),
liblzma5 (= 5.2.5-1.0),
libmagic-mgc (= 1:5.39-3),
libmagic1 (= 1:5.39-3),
libmodule-implementation-perl (= 0.09-1.1),
libmodule-runtime-conflicts-perl (= 0.003-1.1),
libmodule-runtime-perl (= 0.016-1),
libmoose-perl (= 2.2014-2),
libmount1 (= 2.36.1-3),
libmpc3 (= 1.2.0-1),
libmpfr6 (= 4.1.0-3),
libmro-compat-perl (= 0.13-1),
libnamespace-clean-perl (= 0.27-1),
libncurses-dev (= 6.2+20201114-2),
libncurses5-dev (= 6.2+20201114-2),
libncurses6 (= 6.2+20201114-2),
libncursesw6 (= 6.2+20201114-2),
libnettle8 (= 3.6-2),
libnghttp2-14 (= 1.42.0-1),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libp11-kit0 (= 0.23.22-1),
libpackage-deprecationmanager-perl (= 0.17-1.1),
libpackage-stash-perl (= 0.39-1),
libpackage-stash-xs-perl (= 0.29-1+b2),
libpam-modules (= 1.3.1-5),
libpam-modules-bin (= 1.3.1-5),
libpam-runtime (= 1.3.1-5),
libpam0g (= 1.3.1-5),
libpango-1.0-0 (= 1.46.2-3),
libpangocairo-1.0-0 (= 1.46.2-3),
libpangoft2-1.0-0 (= 1.46.2-3),
libpaper-utils (= 1.1.28),
libpaper1 (= 1.1.28),
libparams-classify-perl (= 0.015-1+b3),
libparams-util-perl (= 1.102-1+b1),
libpcre16-3 (= 2:8.39-13),
libpcre2-16-0 (= 10.36-2),
libpcre2-32-0 (= 10.36-2),
libpcre2-8-0 (= 10.36-2),
libpcre2-dev (= 10.36-2),
libpcre2-posix2 (= 10.36-2),
libpcre3 (= 2:8.39-13),
libpcre3-dev (= 2:8.39-13),
libpcre32-3 (= 2:8.39-13),
libpcrecpp0v5 (= 2:8.39-13),
libperl5.32 (= 5.32.0-6),
libpipeline1 (= 1.5.3-1),
libpixman-1-0 (= 0.40.0-1),
libpng-dev (= 1.6.37-3),
libpng16-16 (= 1.6.37-3),
libpsl5 (= 0.21.0-1.1),
libreadline-dev (= 8.1-1),
libreadline8 (= 8.1-1),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.27+dfsg-2),
libsasl2-modules-db (= 2.1.27+dfsg-2),
libseccomp2 (= 2.5.1-1+rpi1),
libselinux1 (= 3.1-2+b1),
libsigsegv2 (= 2.12-3),
libsm6 (= 2:1.2.3-1),
libsmartcols1 (= 2.36.1-3),
libssh2-1 (= 1.9.0-2),
libssl1.1 (= 1.1.1i-1),
libstdc++-10-dev (= 10.2.1-3+rpi1),
libstdc++6 (= 10.2.1-3+rpi1),
libsub-exporter-perl (= 0.987-1),
libsub-exporter-progressive-perl (= 0.001013-1),
libsub-identify-perl (= 0.14-1+b3),
libsub-install-perl (= 0.928-1.1),
libsub-name-perl (= 0.26-1+b1),
libsub-override-perl (= 0.09-2),
libswitch-perl (= 2.17-2.1),
libsystemd0 (= 246.6-4+rpi1),
libtasn1-6 (= 4.16.0-2),
libtcl8.6 (= 8.6.11+dfsg-1),
libthai-data (= 0.1.28-3),
libthai0 (= 0.1.28-3),
libtiff5 (= 4.2.0-1),
libtimedate-perl (= 2.3300-1),
libtinfo6 (= 6.2+20201114-2),
libtirpc-common (= 1.2.6-3),
libtirpc-dev (= 1.2.6-3),
libtirpc3 (= 1.2.6-3),
libtk8.6 (= 8.6.11-1),
libtool (= 2.4.6-15),
libtry-tiny-perl (= 0.30-1),
libubsan1 (= 10.2.1-3+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 246.6-4+rpi1),
libunistring2 (= 0.9.10-4),
liburi-perl (= 5.06-1),
libuuid1 (= 2.36.1-3),
libvariable-magic-perl (= 0.62-1+b3),
libwebp6 (= 0.6.1-2),
libwww-curl-perl (= 4.17-7+b1),
libwww-curl-simple-perl (= 0.100191-2),
libx11-6 (= 2:1.7.0-2),
libx11-data (= 2:1.7.0-2),
libxau6 (= 1:1.0.8-1+b2),
libxcb-render0 (= 1.14-2.1),
libxcb-shm0 (= 1.14-2.1),
libxcb1 (= 1.14-2.1),
libxdmcp6 (= 1:1.1.2-3),
libxext6 (= 2:1.3.3-1.1),
libxft2 (= 2.3.2-2),
libxml2 (= 2.9.10+dfsg-6.3),
libxmuu1 (= 2:1.1.2-2+b3),
libxrender1 (= 1:0.9.10-1),
libxss1 (= 1:1.2.3-1),
libxt6 (= 1:1.2.0-1),
libzstd1 (= 1.4.5+dfsg-4+rpi1),
linux-libc-dev (= 5.9.6-1+rpi1+b1),
login (= 1:4.8.1-1),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-5),
make (= 4.3-4),
man-db (= 2.9.3-2),
mawk (= 1.3.4.20200120-2),
ncurses-base (= 6.2+20201114-1),
ncurses-bin (= 6.2+20201114-1),
openssl (= 1.1.1i-1),
patch (= 2.7.6-6),
perl (= 5.32.0-6),
perl-base (= 5.32.0-6),
perl-modules-5.32 (= 5.32.0-6),
pkg-config (= 0.29.2-1),
po-debconf (= 1.0.21+nmu1),
r-base-core (= 4.0.3-1),
r-base-dev (= 4.0.3-1),
readline-common (= 8.1-1),
sed (= 4.7-1),
sensible-utils (= 0.0.14),
sysvinit-utils (= 2.96-5),
tar (= 1.32+dfsg-1+rpi1),
tzdata (= 2020e-1),
ucf (= 3.0043),
unzip (= 6.0-26),
util-linux (= 2.36.1-3),
x11-common (= 1:7.7+21),
xauth (= 1:1.1-1),
xdg-utils (= 1.1.3-2),
xz-utils (= 5.2.4-1),
zip (= 3.0-11),
zlib1g (= 1:1.2.11.dfsg-2),
zlib1g-dev (= 1:1.2.11.dfsg-2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1610805346"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-qtl-dbgsym_1.47-9-1_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 287984 bytes: control archive=532 bytes.
378 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-qtl-dbgsym
Source: r-cran-qtl
Version: 1.47-9-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 317
Depends: r-cran-qtl (= 1.47-9-1)
Section: debug
Priority: optional
Description: debug symbols for r-cran-qtl
Build-Ids: 42a59f4611463bd54a8d2374469e7c7feeff3728
drwxr-xr-x root/root 0 2021-01-16 13:55 ./
drwxr-xr-x root/root 0 2021-01-16 13:55 ./usr/
drwxr-xr-x root/root 0 2021-01-16 13:55 ./usr/lib/
drwxr-xr-x root/root 0 2021-01-16 13:55 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-01-16 13:55 ./usr/lib/debug/.build-id/
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drwxr-xr-x root/root 0 2021-01-16 13:55 ./usr/share/
drwxr-xr-x root/root 0 2021-01-16 13:55 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-01-16 13:55 ./usr/share/doc/r-cran-qtl-dbgsym -> r-cran-qtl
r-cran-qtl_1.47-9-1_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 5494708 bytes: control archive=6152 bytes.
1959 bytes, 37 lines control
16830 bytes, 192 lines md5sums
Package: r-cran-qtl
Version: 1.47-9-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 10223
Depends: r-base-core (>= 4.0.3-1), r-api-4.0, libblas3 | libblas.so.3, libc6 (>= 2.29), libgcc-s1 (>= 3.5), liblapack3 | liblapack.so.3, ruby
Recommends: r-cran-testthat
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=qtl
Description: GNU R package for genetic marker linkage analysis
R/qtl is an extensible, interactive environment for mapping quantitative
trait loci (QTLs) in experimental crosses. It is implemented as an
add-on-package for the freely available and widely used statistical
language/software R (see http://www.r-project.org).
.
The development of this software as an add-on to R allows one to take
advantage of the basic mathematical and statistical functions, and
powerful graphics capabilities, that are provided with R. Further,
the user will benefit by the seamless integration of the QTL mapping
software into a general statistical analysis program. The goal is to
make complex QTL mapping methods widely accessible and allow users to
focus on modeling rather than computing.
.
A key component of computational methods for QTL mapping is the hidden
Markov model (HMM) technology for dealing with missing genotype data. The
main HMM algorithms, with allowance for the presence of genotyping errors,
for backcrosses, intercrosses, and phase-known four-way crosses
were implemented.
.
The current version of R/qtl includes facilities for estimating
genetic maps, identifying genotyping errors, and performing single-QTL
genome scans and two-QTL, two-dimensional genome scans, by interval
mapping (with the EM algorithm), Haley-Knott regression, and multiple
imputation. All of this may be done in the presence of covariates (such
as sex, age or treatment). One may also fit higher-order QTL models by
multiple imputation.
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| Summary |
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Build Architecture: armhf
Build Type: any
Build-Space: 28816
Build-Time: 177
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 744
Job: r-cran-qtl_1.47-9-1
Machine Architecture: armhf
Package: r-cran-qtl
Package-Time: 951
Source-Version: 1.47-9-1
Space: 28816
Status: successful
Version: 1.47-9-1
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Finished at 2021-01-19T05:58:47Z
Build needed 00:15:51, 28816k disk space