r-cran-qtl →
1.42-8-1 →
armhf → 2018-02-27 05:18:32
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| r-cran-qtl 1.42-8-1 (armhf) Tue, 27 Feb 2018 04:46:53 +0000 |
+==============================================================================+
Package: r-cran-qtl
Version: 1.42-8-1
Source Version: 1.42-8-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-6c1bdaf2-a1f2-4edc-b80a-4b6bf29e52fe' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.6 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.4 MB]
Fetched 23.0 MB in 26s (899 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-qtl' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/r-cran-qtl.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/r-cran-qtl.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 4358 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-cran-qtl 1.42-8-1 (dsc) [2097 B]
Get:2 http://172.17.0.1/private buster-staging/main r-cran-qtl 1.42-8-1 (tar) [4349 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-cran-qtl 1.42-8-1 (diff) [6396 B]
Fetched 4358 kB in 0s (9460 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-qtl-6mJQSk/r-cran-qtl-1.42-8' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-qtl-6mJQSk' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-oWkyAh/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-oWkyAh/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-oWkyAh/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-oWkyAh/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-oWkyAh/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-oWkyAh/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-oWkyAh/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-oWkyAh/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2960 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
e2fsprogs-l10n
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 84 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-oWkyAh/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (21.4 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13278 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev
dpkg-deb: building package 'sbuild-build-depends-r-cran-qtl-dummy' in '/<<BUILDDIR>>/resolver-oWkyAh/apt_archive/sbuild-build-depends-r-cran-qtl-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-cran-qtl-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-oWkyAh/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-oWkyAh/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-oWkyAh/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-oWkyAh/apt_archive ./ Sources [505 B]
Get:5 copy:/<<BUILDDIR>>/resolver-oWkyAh/apt_archive ./ Packages [585 B]
Fetched 2423 B in 1s (3164 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-cran-qtl build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
e2fsprogs-l10n
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev binutils
binutils-arm-linux-gnueabihf binutils-common bsdmainutils ca-certificates
cdbs cpp-7 dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism
file fontconfig fontconfig-config fonts-dejavu-core g++-7 gcc-7 gcc-7-base
gcc-8-base gettext gettext-base gfortran gfortran-7 groff-base icu-devtools
intltool-debian libarchive-zip-perl libasan4 libatomic1 libbinutils
libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcc1-0 libcilkrts5
libcroco3 libcurl3 libdatrie1 libexpat1 libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libgcc-7-dev libgcc1 libgdbm5 libgfortran-7-dev
libgfortran4 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2
libharfbuzz0b libice6 libicu-dev libicu57 libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack-dev liblapack3 liblzma-dev libmagic-mgc libmagic1
libncurses5 libncurses5-dev libncursesw5 libnghttp2-14 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
libpcre3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0
libpng-dev libpsl5 libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1
libssl1.0.2 libssl1.1 libstdc++-7-dev libstdc++6 libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtinfo-dev libtinfo5 libtk8.6 libtool
libubsan0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1
libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4
man-db ncurses-bin openssl pkg-config po-debconf r-base-core r-base-dev ucf
unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican
| wordlist whois vacation devscripts gcc-7-locales debtags dh-make dwz
gcc-7-doc libstdc++6-7-dbg libgcc1-dbg libgomp1-dbg libitm1-dbg
libatomic1-dbg libasan4-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg
libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-7-doc libgfortran4-dbg
libcoarrays-dev groff liblapack-doc gdbm-l10n krb5-doc krb5-user icu-doc
liblzma-doc ncurses-doc readline-doc libstdc++-7-doc tcl8.6 tk8.6
libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl ess
r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
Recommended packages:
curl | wget | lynx-cur bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 libpng-tools
publicsuffix libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates cdbs
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism file
fontconfig fontconfig-config fonts-dejavu-core gcc-8-base gettext
gettext-base gfortran gfortran-7 groff-base icu-devtools intltool-debian
libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev libcairo2
libcroco3 libcurl3 libdatrie1 libexpat1 libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libgdbm5 libgfortran-7-dev libgfortran4
libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6
libicu-dev libicu57 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
liblzma-dev libmagic-mgc libmagic1 libncurses5-dev libnghttp2-14
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsigsegv2 libsm6
libssh2-1 libssl1.0.2 libssl1.1 libtcl8.6 libthai-data libthai0 libtiff5
libtimedate-perl libtinfo-dev libtk8.6 libtool libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config po-debconf
r-base-core r-base-dev sbuild-build-depends-r-cran-qtl-dummy ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
binutils binutils-arm-linux-gnueabihf binutils-common cpp-7 g++-7 gcc-7
gcc-7-base libasan4 libatomic1 libbinutils libcc1-0 libcilkrts5 libgcc-7-dev
libgcc1 libgomp1 libncurses5 libncursesw5 libpcre3 libstdc++-7-dev
libstdc++6 libtinfo5 libubsan0 ncurses-bin
23 upgraded, 119 newly installed, 0 to remove and 61 not upgraded.
Need to get 107 MB/108 MB of archives.
After this operation, 247 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-oWkyAh/apt_archive ./ sbuild-build-depends-r-cran-qtl-dummy 0.invalid.0 [872 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libncurses5 armhf 6.1-1 [73.9 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libtinfo5 armhf 6.1-1 [304 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf ncurses-bin armhf 6.1-1 [393 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libncursesw5 armhf 6.1-1 [93.9 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.7-1 [96.8 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf gcc-8-base armhf 8-20180207-2+rpi1 [183 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:8-20180207-2+rpi1 [36.7 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 8-20180207-2+rpi1 [325 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libgdbm5 armhf 1.14.1-4 [54.0 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.1-1+b1 [1143 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.8.1-2 [402 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf ucf all 3.0037 [67.4 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.12.6-0.1 [304 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.12.6-0.1 [351 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.12.6-0.1 [438 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.12-1 [129 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.4-3 [290 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.4-3 [683 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf x11-common all 1:7.7+19 [251 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libpcre3 armhf 2:8.39-9 [313 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 8-20180207-2+rpi1 [63.9 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf g++-7 armhf 7.3.0-5 [5585 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf gcc-7 armhf 7.3.0-5 [5473 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf cpp-7 armhf 7.3.0-5 [5138 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 8-20180207-2+rpi1 [30.1 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libbinutils armhf 2.30-4+rpi1 [300 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf binutils-common armhf 2.30-4+rpi1 [1787 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf binutils armhf 2.30-4+rpi1 [53.4 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf binutils-arm-linux-gnueabihf armhf 2.30-4+rpi1 [1835 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 8-20180207-2+rpi1 [8112 B]
Get:40 http://172.17.0.1/private buster-staging/main armhf libasan4 armhf 7.3.0-5 [301 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libubsan0 armhf 7.3.0-5 [106 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libcilkrts5 armhf 7.3.0-5 [35.2 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libstdc++-7-dev armhf 7.3.0-5 [1475 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libgcc-7-dev armhf 7.3.0-5 [671 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf gcc-7-base armhf 7.3.0-5 [185 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2n-1 [887 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.32-2 [225 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.32-2 [105 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.32-2 [63.8 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9.2 [12.1 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-1 [32.2 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20171216.1 [75.9 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf openssl armhf 1.1.0g-2 [707 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf ca-certificates all 20170717 [178 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf cdbs all 0.4.156 [83.1 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-2 [94.4 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 16 [16.3 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.3-2 [2651 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-8 [7411 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-6.1 [602 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-2 [132 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.1.4 [1005 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.2-1 [72.7 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-5 [190 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.7.1-4 [103 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libpixman-1-0 armhf 0.34.0-2 [451 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.12-1 [104 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.12-1 [95.9 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.15.10-1 [573 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.16-2 [59.0 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.16-2 [116 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.16-2 [265 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.16-2 [135 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.30.0-1 [70.6 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.19.1-4 [43.2 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libcurl3 armhf 7.58.0-2 [276 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.7.1-4 [1508 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.27-2 [168 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.10-7 [33.4 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.27-2 [50.2 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.40.14-1 [181 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.10-8 [71.9 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.7.2-1 [705 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.40.14-1 [74.3 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.40.14-1 [63.4 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libsm6 armhf 2:1.2.2-1+b3 [31.2 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.8+dfsg-2 [865 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.9-4 [224 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-1+b2 [49.3 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.8-2 [656 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.4.3-1 [22.9 MB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libgfortran-7-dev armhf 7.3.0-5 [232 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf gfortran-7 armhf 7.3.0-5 [5452 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:7.2.0-1d1 [1352 B]
Get:119 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.7.1-4 [112 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.7.1-4 [1564 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf libtinfo-dev armhf 6.1-1 [66.6 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.1-1 [152 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-3 [109 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-9 [234 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-9 [226 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-9 [150 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-9 [561 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-1 [274 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-8.1 [26.9 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf liblzma-dev armhf 5.2.2-1.3 [284 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 57.1-8 [156 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 57.1-8 [15.8 MB]
Get:136 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf pkg-config armhf 0.29-4 [59.2 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.4.3-1 [4488 B]
Get:140 http://172.17.0.1/private buster-staging/main armhf dh-r all 20171201 [10.0 kB]
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Unpacking libxcb-render0:armhf (1.12-1) ...
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Unpacking libkrb5support0:armhf (1.16-2) ...
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Unpacking libk5crypto3:armhf (1.16-2) ...
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Unpacking libpsl5:armhf (0.19.1-4) ...
Selecting previously unselected package librtmp1:armhf.
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Unpacking r-base-core (3.4.3-1) ...
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Unpacking gfortran-7 (7.3.0-5) ...
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Unpacking gfortran (4:7.2.0-1d1) ...
Selecting previously unselected package libblas-dev:armhf.
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Unpacking libblas-dev:armhf (3.7.1-4) ...
Selecting previously unselected package liblapack-dev:armhf.
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Unpacking libtinfo-dev:armhf (6.1-1) ...
Selecting previously unselected package libncurses5-dev:armhf.
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Selecting previously unselected package libreadline-dev:armhf.
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Unpacking libreadline-dev:armhf (7.0-3) ...
Selecting previously unselected package libjpeg62-turbo-dev:armhf.
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Unpacking libjpeg-dev (1:1.5.2-2) ...
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Unpacking libpcre3-dev:armhf (2:8.39-9) ...
Selecting previously unselected package zlib1g-dev:armhf.
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Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
Selecting previously unselected package libpng-dev:armhf.
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Unpacking libpng-dev:armhf (1.6.34-1) ...
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Unpacking libbz2-dev:armhf (1.0.6-8.1) ...
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Unpacking liblzma-dev:armhf (5.2.2-1.3) ...
Selecting previously unselected package icu-devtools.
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Unpacking libicu-dev (57.1-8) ...
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Unpacking libxmuu1:armhf (2:1.1.2-2) ...
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Unpacking xauth (1:1.0.10-1) ...
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Unpacking dh-r (20171201) ...
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Unpacking sbuild-build-depends-r-cran-qtl-dummy (0.invalid.0) ...
Setting up cdbs (0.4.156) ...
Setting up libncurses5:armhf (6.1-1) ...
Setting up libgomp1:armhf (8-20180207-2+rpi1) ...
Setting up libatomic1:armhf (8-20180207-2+rpi1) ...
Setting up libexpat1:armhf (2.2.5-3) ...
Setting up libcc1-0:armhf (8-20180207-2+rpi1) ...
Setting up libbz2-dev:armhf (1.0.6-8.1) ...
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libarchive-zip-perl (1.60-1) ...
Setting up libnghttp2-14:armhf (1.30.0-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libsigsegv2:armhf (2.12-1) ...
Setting up fonts-dejavu-core (2.37-1) ...
Setting up libpsl5:armhf (0.19.1-4) ...
Setting up groff-base (1.22.3-10) ...
Setting up libglib2.0-0:armhf (2.54.3-2) ...
No schema files found: doing nothing.
Setting up unzip (6.0-21) ...
Setting up libtinfo-dev:armhf (6.1-1) ...
Setting up dctrl-tools (2.24-2) ...
Setting up libdatrie1:armhf (0.2.10-7) ...
Setting up libtiff5:armhf (4.0.9-4) ...
Setting up gettext-base (0.19.8.1-4) ...
Setting up libpipeline1:armhf (1.5.0-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libgdbm5:armhf (1.14.1-4) ...
Setting up libicu57:armhf (57.1-8) ...
Setting up libbsd0:armhf (0.8.7-1) ...
Setting up ucf (3.0037) ...
Setting up libxml2:armhf (2.9.4+dfsg1-6.1) ...
Setting up zip (3.0-11) ...
Setting up libfreetype6:armhf (2.8.1-2) ...
Setting up libmagic-mgc (1:5.32-2) ...
Setting up libmagic1:armhf (1:5.32-2) ...
Setting up libgraphite2-3:armhf (1.3.10-8) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up gcc-7-base:armhf (7.3.0-5) ...
Setting up libncurses5-dev:armhf (6.1-1) ...
Setting up binutils-common:armhf (2.30-4+rpi1) ...
Setting up libssl1.0.2:armhf (1.0.2n-1) ...
Setting up pkg-config (0.29-4) ...
Setting up libpixman-1-0:armhf (0.34.0-2) ...
Setting up libssh2-1:armhf (1.8.0-1) ...
Processing triggers for libc-bin (2.26-4+rpi1) ...
Setting up autotools-dev (20171216.1) ...
Setting up libssl1.1:armhf (1.1.0g-2) ...
Processing triggers for systemd (236-2) ...
Setting up openssl (1.1.0g-2) ...
Setting up libreadline-dev:armhf (7.0-3) ...
Setting up libpcrecpp0v5:armhf (2:8.39-9) ...
Setting up libpcre32-3:armhf (2:8.39-9) ...
Setting up icu-devtools (57.1-8) ...
Setting up libpcre16-3:armhf (2:8.39-9) ...
Setting up libtcl8.6:armhf (8.6.8+dfsg-2) ...
Setting up libthai-data (0.1.27-2) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.5.2-2+b1) ...
Setting up liblzma-dev:armhf (5.2.2-1.3) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libkeyutils1:armhf (1.5.9-9.2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up x11-common (1:7.7+19) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up xdg-utils (1.1.2-1) ...
Setting up ca-certificates (20170717) ...
Updating certificates in /etc/ssl/certs...
148 added, 0 removed; done.
Setting up libx11-data (2:1.6.4-3) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up autopoint (0.19.8.1-4) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
Setting up libfile-stripnondeterminism-perl (0.040-1) ...
Setting up libpaper1:armhf (1.1.24+nmu5) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu5) ...
Setting up libpcre3-dev:armhf (2:8.39-9) ...
Setting up fontconfig-config (2.12.6-0.1) ...
Setting up libasan4:armhf (7.3.0-5) ...
Setting up libgfortran4:armhf (7.3.0-5) ...
Setting up gettext (0.19.8.1-4) ...
Setting up libbinutils:armhf (2.30-4+rpi1) ...
Setting up libcilkrts5:armhf (7.3.0-5) ...
Setting up libubsan0:armhf (7.3.0-5) ...
Setting up binutils-arm-linux-gnueabihf (2.30-4+rpi1) ...
Setting up libharfbuzz0b:armhf (1.7.2-1) ...
Setting up autoconf (2.69-11) ...
Setting up libthai0:armhf (0.1.27-2) ...
Setting up file (1:5.32-2) ...
Setting up libkrb5support0:armhf (1.16-2) ...
Setting up libgcc-7-dev:armhf (7.3.0-5) ...
Setting up cpp-7 (7.3.0-5) ...
Setting up libstdc++-7-dev:armhf (7.3.0-5) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libblas3:armhf (3.7.1-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up automake (1:1.15.1-3) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up libgfortran-7-dev:armhf (7.3.0-5) ...
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up man-db (2.8.1-1+b1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up binutils (2.30-4+rpi1) ...
Setting up libpng-dev:armhf (1.6.34-1) ...
Setting up libxcb1:armhf (1.12-1) ...
Setting up libtool (2.4.6-2) ...
Setting up libfontconfig1:armhf (2.12.6-0.1) ...
Setting up libsm6:armhf (2:1.2.2-1+b3) ...
Setting up libk5crypto3:armhf (1.16-2) ...
Setting up libxcb-render0:armhf (1.12-1) ...
Setting up po-debconf (1.0.20) ...
Setting up gcc-7 (7.3.0-5) ...
Setting up libblas-dev:armhf (3.7.1-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up g++-7 (7.3.0-5) ...
Setting up liblapack3:armhf (3.7.1-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libx11-6:armhf (2:1.6.4-3) ...
Setting up libicu-dev (57.1-8) ...
Setting up libxmuu1:armhf (2:1.1.2-2) ...
Setting up libxcb-shm0:armhf (1.12-1) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up gfortran-7 (7.3.0-5) ...
Setting up libkrb5-3:armhf (1.16-2) ...
Setting up libxft2:armhf (2.3.2-1+b2) ...
Setting up fontconfig (2.12.6-0.1) ...
Regenerating fonts cache... done.
Setting up liblapack-dev:armhf (3.7.1-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up gfortran (4:7.2.0-1d1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libgssapi-krb5-2:armhf (1.16-2) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libpango-1.0-0:armhf (1.40.14-1) ...
Setting up libcairo2:armhf (1.15.10-1) ...
Setting up libcurl3:armhf (7.58.0-2) ...
Setting up libtk8.6:armhf (8.6.8-2) ...
Setting up libpangoft2-1.0-0:armhf (1.40.14-1) ...
Setting up libpangocairo-1.0-0:armhf (1.40.14-1) ...
Setting up r-base-core (3.4.3-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (3.4.3-1) ...
Setting up dh-autoreconf (16) ...
Setting up dh-strip-nondeterminism (0.040-1) ...
Setting up debhelper (11.1.4) ...
Setting up dh-r (20171201) ...
Setting up sbuild-build-depends-r-cran-qtl-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.26-4+rpi1) ...
Processing triggers for systemd (236-2) ...
Processing triggers for ca-certificates (20170717) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.30-4+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-5 gcc-7_7.3.0-5 libc6-dev_2.26-4+rpi1 libstdc++-7-dev_7.3.0-5 libstdc++6_8-20180207-2+rpi1 linux-libc-dev_4.9.51-1+rpi3+b1
Package versions: adduser_3.116 apt_1.6~alpha6 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20171216.1 base-files_10.1+rpi1 base-passwd_3.5.44 bash_4.4-5 binutils_2.30-4+rpi1 binutils-arm-linux-gnueabihf_2.30-4+rpi1 binutils-common_2.30-4+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.30.2-0.3 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 cdbs_0.4.156 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.3.0-5 dash_0.5.8-2.10 dctrl-tools_2.24-2 debconf_1.5.65 debhelper_11.1.4 debianutils_4.8.4 dh-autoreconf_16 dh-r_20171201 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dirmngr_2.2.4-1 dmsetup_2:1.02.145-4.1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.43.8-2 e2fsprogs_1.43.8-2 e2fsprogs-l10n_1.43.8-2 fakeroot_1.22-2 fdisk_2.30.2-0.3 file_1:5.32-2 findutils_4.6.0+git+20170828-2 fontconfig_2.12.6-0.1 fontconfig-config_2.12.6-0.1 fonts-dejavu-core_2.37-1 g++_4:7.2.0-1d1 g++-7_7.3.0-5 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-6-base_6.4.0-11 gcc-7_7.3.0-5 gcc-7-base_7.3.0-5 gcc-8-base_8-20180207-2+rpi1 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gfortran_4:7.2.0-1d1 gfortran-7_7.3.0-5 gnupg_2.2.4-1 gnupg-l10n_2.2.4-1 gnupg-utils_2.2.4-1 gpg_2.2.4-1 gpg-agent_2.2.4-1 gpg-wks-client_2.2.4-1 gpg-wks-server_2.2.4-1 gpgconf_2.2.4-1 gpgsm_2.2.4-1 gpgv_2.2.4-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 icu-devtools_57.1-8 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.12-2 libapt-pkg5.0_1.6~alpha6 libarchive-zip-perl_1.60-1 libasan4_7.3.0-5 libassuan0_2.5.1-1 libatomic1_8-20180207-2+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.2-1 libaudit1_1:2.8.2-1 libbinutils_2.30-4+rpi1 libblas-dev_3.7.1-4 libblas3_3.7.1-4 libblkid1_2.30.2-0.3 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libbz2-dev_1.0.6-8.1 libc-bin_2.26-4+rpi1 libc-dev-bin_2.26-4+rpi1 libc6_2.26-4+rpi1 libc6-dev_2.26-4+rpi1 libcairo2_1.15.10-1 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.2 libcc1-0_8-20180207-2+rpi1 libcilkrts5_7.3.0-5 libcomerr2_1.43.8-2 libcroco3_0.6.12-2 libcryptsetup4_2:1.7.5-1 libcurl3_7.58.0-2 libdatrie1_0.2.10-7 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.2-1 libdebconfclient0_0.239 libdevmapper1.02.1_2:1.02.145-4.1 libdpkg-perl_1.19.0.5 libdrm-common_2.4.89-1+rpi1 libdrm2_2.4.89-1+rpi1 libexpat1_2.2.5-3 libfakeroot_1.22-2 libfdisk1_2.30.2-0.3 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1 libfontconfig1_2.12.6-0.1 libfreetype6_2.8.1-2 libgcc-7-dev_7.3.0-5 libgcc1_1:8-20180207-2+rpi1 libgcrypt20_1.8.1-4 libgdbm3_1.8.3-14 libgdbm5_1.14.1-4 libgfortran-7-dev_7.3.0-5 libgfortran4_7.3.0-5 libglib2.0-0_2.54.3-2 libgmp10_2:6.1.2+dfsg-2 libgnutls30_3.5.17-1 libgomp1_8-20180207-2+rpi1 libgpg-error0_1.27-5 libgraphite2-3_1.3.10-8 libgssapi-krb5-2_1.16-2 libharfbuzz0b_1.7.2-1 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libtiff5_4.0.9-4 libtimedate-perl_2.3000-2 libtinfo-dev_6.1-1 libtinfo5_6.1-1 libtk8.6_8.6.8-2 libtool_2.4.6-2 libubsan0_7.3.0-5 libudev1_236-2 libunistring2_0.9.8-1 libuuid1_2.30.2-0.3 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libxau6_1:1.0.8-1+b2 libxcb-render0_1.12-1 libxcb-shm0_1.12-1 libxcb1_1.12-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-1+b2 libxml2_2.9.4+dfsg1-6.1 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.2-1 libxt6_1:1.1.5-1 linux-base_4.5 linux-libc-dev_4.9.51-1+rpi3+b1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.1-1+b1 mawk_1.3.3-17 mount_2.30.2-0.3 multiarch-support_2.26-4+rpi1 nano_2.9.2-1 ncurses-base_6.0+20171125-1 ncurses-bin_6.1-1 openssl_1.1.0g-2 passwd_1:4.5-1 patch_2.7.5-1 perl_5.26.1-4 perl-base_5.26.1-4 perl-modules-5.26_5.26.1-4 pinentry-curses_1.0.0-3 pkg-config_0.29-4 plymouth_0.9.3-2 po-debconf_1.0.20 procps_2:3.3.12-3 r-base-core_3.4.3-1 r-base-dev_3.4.3-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-qtl-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.11 systemd_236-2 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2018c-1 ucf_3.0037 udev_236-2 unzip_6.0-21 util-linux_2.30.2-0.3 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.2-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Feb 22 08:43:21 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-cran-qtl_1.42-8-1.dsc
dpkg-source: info: extracting r-cran-qtl in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-cran-qtl_1.42-8.orig.tar.gz
dpkg-source: info: unpacking r-cran-qtl_1.42-8-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-6c1bdaf2-a1f2-4edc-b80a-4b6bf29e52fe
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-cran-qtl
dpkg-buildpackage: info: source version 1.42-8-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build r-cran-qtl-1.42-8
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_testdir -O--buildsystem=R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_testdir -a -O--buildsystem=R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R Package: qtl Version: 1.42-8
I: Building using R version 3.4.3-1
I: R API version: r-api-3.4
I: Using built-time from d/changelog: Thu, 22 Feb 2018 09:38:47 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-qtl/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-qtl/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 22 Feb 2018 09:38:47 +0100'"
* installing *source* package 'qtl' ...
** package 'qtl' successfully unpacked and MD5 sums checked
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init.c -o R_init.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c countXO.c -o countXO.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c discan.c -o discan.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c discan_covar.c -o discan_covar.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c effectscan.c -o effectscan.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fill_geno_nodblXO.c -o fill_geno_nodblXO.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c findDupMarkers_notexact.c -o findDupMarkers_notexact.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fitqtl_hk.c -o fitqtl_hk.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fitqtl_hk_binary.c -o fitqtl_hk_binary.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fitqtl_imp.c -o fitqtl_imp.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fitqtl_imp_binary.c -o fitqtl_imp_binary.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c forwsel.c -o forwsel.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_4way.c -o hmm_4way.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_bc.c -o hmm_bc.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_bci.c -o hmm_bci.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_bcsft.c -o hmm_bcsft.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_bgmagic16.c -o hmm_bgmagic16.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_f2.c -o hmm_f2.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_f2i.c -o hmm_f2i.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_main.c -o hmm_main.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_ri4self.c -o hmm_ri4self.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_ri4sib.c -o hmm_ri4sib.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_ri8self.c -o hmm_ri8self.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_ri8selfIRIP1.c -o hmm_ri8selfIRIP1.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_ri8sib.c -o hmm_ri8sib.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hmm_util.c -o hmm_util.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inferFounderHap.c -o inferFounderHap.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c info.c -o info.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lapackutil.c -o lapackutil.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c markerlrt.c -o markerlrt.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmaugment.cpp -o mqmaugment.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmdatatypes.cpp -o mqmdatatypes.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmeliminate.cpp -o mqmeliminate.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmmapqtl.cpp -o mqmmapqtl.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmmixture.cpp -o mqmmixture.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmprob.cpp -o mqmprob.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmregression.cpp -o mqmregression.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mqmscan.cpp -o mqmscan.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pickMarkerSubset.c -o pickMarkerSubset.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ril48_reorg.c -o ril48_reorg.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ripple.c -o ripple.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_ehk.c -o scanone_ehk.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_em.c -o scanone_em.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_em_covar.c -o scanone_em_covar.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_hk.c -o scanone_hk.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_hk_binary.c -o scanone_hk_binary.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_imp.c -o scanone_imp.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_mr.c -o scanone_mr.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scanone_np.c -o scanone_np.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_binary_em.c -o scantwo_binary_em.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_binary_hk.c -o scantwo_binary_hk.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_em.c -o scantwo_em.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_hk.c -o scantwo_hk.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_imp.c -o scantwo_imp.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwo_mr.c -o scantwo_mr.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scantwopermhk.c -o scantwopermhk.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c simulate.c -o simulate.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c simulate_ril.c -o simulate_ril.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stahl_mf.c -o stahl_mf.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c summary_scantwo.c -o summary_scantwo.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test_bcsft.c -o test_bcsft.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vbscan.c -o vbscan.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-w84Cap/r-base-3.4.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c zeroin.c -o zeroin.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o qtl.so R_init.o countXO.o discan.o discan_covar.o effectscan.o fill_geno_nodblXO.o findDupMarkers_notexact.o fitqtl_hk.o fitqtl_hk_binary.o fitqtl_imp.o fitqtl_imp_binary.o forwsel.o hmm_4way.o hmm_bc.o hmm_bci.o hmm_bcsft.o hmm_bgmagic16.o hmm_f2.o hmm_f2i.o hmm_main.o hmm_ri4self.o hmm_ri4sib.o hmm_ri8self.o hmm_ri8selfIRIP1.o hmm_ri8sib.o hmm_util.o inferFounderHap.o info.o lapackutil.o markerlrt.o mqmaugment.o mqmdatatypes.o mqmeliminate.o mqmmapqtl.o mqmmixture.o mqmprob.o mqmregression.o mqmscan.o pickMarkerSubset.o ril48_reorg.o ripple.o scanone_ehk.o scanone_em.o scanone_em_covar.o scanone_hk.o scanone_hk_binary.o scanone_imp.o scanone_mr.o scanone_np.o scantwo_binary_em.o scantwo_binary_hk.o scantwo_em.o scantwo_hk.o scantwo_imp.o scantwo_mr.o scantwopermhk.o simulate.o simulate_ril.o stahl_mf.o summary_scantwo.o test_bcsft.o util.o vbscan.o zeroin.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-cran-qtl/usr/lib/R/site-library/qtl/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (qtl)
rm -f /<<PKGBUILDDIR>>/debian/r-cran-qtl/usr/lib/R/site-library/qtl/LICENSE.txt
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 290.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 291.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 294.
W: Ignoring specified R dependency: R (>= 2.14.0)
I: Using r-cran-testthat for Suggests:testthat
dh_install -a -O--buildsystem=R
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installman -a -O--buildsystem=R
dh_installcatalogs -a -O--buildsystem=R
dh_installcron -a -O--buildsystem=R
dh_installdebconf -a -O--buildsystem=R
dh_installemacsen -a -O--buildsystem=R
dh_installifupdown -a -O--buildsystem=R
dh_installinfo -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
dh_installsystemd -a -O--buildsystem=R
dh_installmenu -a -O--buildsystem=R
dh_installmime -a -O--buildsystem=R
dh_installmodules -a -O--buildsystem=R
dh_installlogcheck -a -O--buildsystem=R
dh_installlogrotate -a -O--buildsystem=R
dh_installpam -a -O--buildsystem=R
dh_installppp -a -O--buildsystem=R
dh_installudev -a -O--buildsystem=R
dh_installgsettings -a -O--buildsystem=R
dh_bugfiles -a -O--buildsystem=R
dh_ucf -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_gconf -a -O--buildsystem=R
dh_icons -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_usrlocal -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_installwm -a -O--buildsystem=R
dh_installxfonts -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
find debian -name create-diff.sh -exec chmod +x \{\} \;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_missing -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-qtl/usr/lib/R/site-library/qtl/libs/qtl.so was not linked against libgfortran.so.4 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-qtl/usr/lib/R/site-library/qtl/libs/qtl.so was not linked against libstdc++.so.6 (it uses none of the library's symbols)
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-qtl' in '../r-cran-qtl_1.42-8-1_armhf.deb'.
dpkg-deb: building package 'r-cran-qtl-dbgsym' in '../r-cran-qtl-dbgsym_1.42-8-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-cran-qtl_1.42-8-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build r-cran-qtl-1.42-8
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-02-27T05:13:22Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-qtl_1.42-8-1_armhf.changes:
----------------------------------
Format: 1.8
Date: Thu, 22 Feb 2018 09:38:47 +0100
Source: r-cran-qtl
Binary: r-cran-qtl
Architecture: armhf
Version: 1.42-8-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-cran-qtl - GNU R package for genetic marker linkage analysis
Changes:
r-cran-qtl (1.42-8-1) unstable; urgency=medium
.
* New upstream version
* Standards-Version: 4.1.3
* debhelper 11
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Files:
e6a851274c095d4463e6794bb080e86d 234372 debug optional r-cran-qtl-dbgsym_1.42-8-1_armhf.deb
4d695cec7b04e00fe26f807855ec954d 7282 gnu-r optional r-cran-qtl_1.42-8-1_armhf.buildinfo
d6ed3b76d7d9e5daeaf6fa79b89d7b3a 5455716 gnu-r optional r-cran-qtl_1.42-8-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-qtl-dbgsym_1.42-8-1_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 234372 bytes: control archive=536 bytes.
384 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-qtl-dbgsym
Source: r-cran-qtl
Version: 1.42-8-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 266
Depends: r-cran-qtl (= 1.42-8-1)
Section: debug
Priority: optional
Description: debug symbols for r-cran-qtl
Build-Ids: 65bcb97e37bc08cf1bbdfa6f07aa423fd37eee95
drwxr-xr-x root/root 0 2018-02-22 08:38 ./
drwxr-xr-x root/root 0 2018-02-22 08:38 ./usr/
drwxr-xr-x root/root 0 2018-02-22 08:38 ./usr/lib/
drwxr-xr-x root/root 0 2018-02-22 08:38 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-02-22 08:38 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-02-22 08:38 ./usr/lib/debug/.build-id/65/
-rw-r--r-- root/root 261448 2018-02-22 08:38 ./usr/lib/debug/.build-id/65/bcb97e37bc08cf1bbdfa6f07aa423fd37eee95.debug
drwxr-xr-x root/root 0 2018-02-22 08:38 ./usr/share/
drwxr-xr-x root/root 0 2018-02-22 08:38 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-02-22 08:38 ./usr/share/doc/r-cran-qtl-dbgsym -> r-cran-qtl
r-cran-qtl_1.42-8-1_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 5455716 bytes: control archive=6144 bytes.
2017 bytes, 38 lines control
16705 bytes, 191 lines md5sums
Package: r-cran-qtl
Version: 1.42-8-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 10183
Depends: libblas3 | libblas.so.3, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgfortran4 (>= 7), liblapack3 | liblapack.so.3, libstdc++6 (>= 4.1.1), r-base-core (>= 3.4.3-1), r-api-3.4
Recommends: ruby
Suggests: r-cran-testthat
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=qtl
Description: GNU R package for genetic marker linkage analysis
R/qtl is an extensible, interactive environment for mapping quantitative
trait loci (QTLs) in experimental crosses. It is implemented as an
add-on-package for the freely available and widely used statistical
language/software R (see http://www.r-project.org).
.
The development of this software as an add-on to R allows one to take
advantage of the basic mathematical and statistical functions, and
powerful graphics capabilities, that are provided with R. Further,
the user will benefit by the seamless integration of the QTL mapping
software into a general statistical analysis program. The goal is to
make complex QTL mapping methods widely accessible and allow users to
focus on modeling rather than computing.
.
A key component of computational methods for QTL mapping is the hidden
Markov model (HMM) technology for dealing with missing genotype data. The
main HMM algorithms, with allowance for the presence of genotyping errors,
for backcrosses, intercrosses, and phase-known four-way crosses
were implemented.
.
The current version of R/qtl includes facilities for estimating
genetic maps, identifying genotyping errors, and performing single-QTL
genome scans and two-QTL, two-dimensional genome scans, by interval
mapping (with the EM algorithm), Haley-Knott regression, and multiple
imputation. All of this may be done in the presence of covariates (such
as sex, age or treatment). One may also fit higher-order QTL models by
multiple imputation.
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 28544
Build-Time: 599
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 942
Job: r-cran-qtl_1.42-8-1
Machine Architecture: armhf
Package: r-cran-qtl
Package-Time: 1589
Source-Version: 1.42-8-1
Space: 28544
Status: successful
Version: 1.42-8-1
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Finished at 2018-02-27T05:13:22Z
Build needed 00:26:29, 28544k disc space