r-cran-qtl →
1.37-11-1 →
armhf → 2015-09-28 07:14:46
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-03
╔══════════════════════════════════════════════════════════════════════════════╗
║ r-cran-qtl 1.37-11-1 (armhf) 28 Sep 2015 06:56 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-cran-qtl
Version: 1.37-11-1
Source Version: 1.37-11-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/r-cran-qtl-kXB6ls/r-cran-qtl-1.37-11' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/r-cran-qtl-kXB6ls' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-609f47e5-99cd-4c30-b11f-f547f5e40024' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8330 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [10.2 MB]
Ign http://172.17.0.1 stretch-staging/main Translation-en
Fetched 18.5 MB in 33s (551 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-cran-qtl' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-qtl/trunk/
Need to get 4939 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main r-cran-qtl 1.37-11-1 (dsc) [2047 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main r-cran-qtl 1.37-11-1 (tar) [4931 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main r-cran-qtl 1.37-11-1 (diff) [5820 B]
Fetched 4939 kB in 1s (3675 kB/s)
Download complete and in download only mode
Check architectures
───────────────────
Check dependencies
──────────────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-oIBBgb/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 40 not upgraded.
Need to get 0 B/762 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12875 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), cdbs, r-base-dev
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), cdbs, r-base-dev
dpkg-deb: building package 'sbuild-build-depends-r-cran-qtl-dummy' in '/«BUILDDIR»/resolver-p8bK90/apt_archive/sbuild-build-depends-r-cran-qtl-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-cran-qtl build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils ca-certificates cdbs cpp-5 debhelper file fontconfig
fontconfig-config fonts-dejavu-core g++-5 gcc-5 gcc-5-base gettext
gettext-base gfortran gfortran-5 groff-base intltool-debian libasan2
libatomic1 libblas-common libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0
libcroco3 libcurl3 libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6
libgcc-5-dev libgcc1 libgfortran-5-dev libgfortran3 libglib2.0-0
libgnutls-deb0-28 libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b
libhogweed4 libice6 libidn11 libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblapack-dev liblapack3 libldap-2.4-2 liblzma-dev libmagic1 libncurses5-dev
libnettle6 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre16-3 libpcre3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng12-dev libreadline-dev
libreadline6-dev librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh2-1
libssl1.0.0 libstdc++-5-dev libstdc++6 libtasn1-6 libtcl8.6 libthai-data
libthai0 libtiff5 libtinfo-dev libtk8.6 libubsan0 libunistring0 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxml2 libxrender1 libxss1 libxt6 man-db openssl po-debconf
r-base-core r-base-dev ucf unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts gcc-5-locales dh-make gcc-5-doc
libstdc++6-5-dbg libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg
libasan2-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg
libmpx0-dbg libquadmath-dbg gettext-doc autopoint libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-5-doc libgfortran3-dbg groff
gnutls-bin krb5-doc krb5-user liblzma-doc ncurses-doc readline-doc
libstdc++-5-doc tcl8.6 tk8.6 less www-browser libmail-box-perl r-doc-info
r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
gvfs-bin
Recommended packages:
autotools-dev curl wget lynx-cur bzip2-doc libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales libsasl2-modules xml-core libmail-sendmail-perl
r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils ca-certificates cdbs debhelper file fontconfig
fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-5
groff-base intltool-debian libblas-common libblas-dev libblas3 libbz2-dev
libcairo2 libcroco3 libcurl3 libdatrie1 libexpat1 libffi6 libfontconfig1
libfreetype6 libgfortran-5-dev libgfortran3 libglib2.0-0 libgnutls-deb0-28
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libice6 libidn11
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
libldap-2.4-2 liblzma-dev libmagic1 libncurses5-dev libnettle6 libp11-kit0
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng12-dev libreadline-dev libreadline6-dev librtmp1
libsasl2-2 libsasl2-modules-db libsm6 libssh2-1 libssl1.0.0 libtasn1-6
libtcl8.6 libthai-data libthai0 libtiff5 libtinfo-dev libtk8.6 libunistring0
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db openssl
po-debconf r-base-core r-base-dev sbuild-build-depends-r-cran-qtl-dummy ucf
unzip x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp-5 g++-5 gcc-5 gcc-5-base libasan2 libatomic1 libcc1-0 libgcc-5-dev
libgcc1 libgomp1 libpcre3 libstdc++-5-dev libstdc++6 libubsan0
14 upgraded, 105 newly installed, 0 to remove and 26 not upgraded.
Need to get 153 MB/153 MB of archives.
After this operation, 224 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main libpcre3 armhf 2:8.35-7.2 [299 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main libgomp1 armhf 5.2.1-17+rpi1 [47.6 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main libatomic1 armhf 5.2.1-17+rpi1 [6712 B]
Get:4 http://172.17.0.1/private/ stretch-staging/main libasan2 armhf 5.2.1-17+rpi1 [227 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main libubsan0 armhf 5.2.1-17+rpi1 [84.3 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main cpp-5 armhf 5.2.1-17+rpi1 [23.1 MB]
Get:7 http://172.17.0.1/private/ stretch-staging/main libcc1-0 armhf 5.2.1-17+rpi1 [24.8 kB]
Get:8 http://172.17.0.1/private/ stretch-staging/main g++-5 armhf 5.2.1-17+rpi1 [32.2 MB]
Get:9 http://172.17.0.1/private/ stretch-staging/main gcc-5 armhf 5.2.1-17+rpi1 [23.1 MB]
Get:10 http://172.17.0.1/private/ stretch-staging/main libgcc-5-dev armhf 5.2.1-17+rpi1 [448 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main gcc-5-base armhf 5.2.1-17+rpi1 [166 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main libstdc++6 armhf 5.2.1-17+rpi1 [325 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main libstdc++-5-dev armhf 5.2.1-17+rpi1 [1376 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main libgcc1 armhf 1:5.2.1-17+rpi1 [38.5 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.1-1 [23.9 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.3-1 [975 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main libtasn1-6 armhf 4.5-2 [43.9 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.1+dfsg1-5 [703 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main libfreetype6 armhf 2.6-2 [397 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main ucf all 3.0030 [69.7 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main fonts-dejavu-core all 2.35-1 [1064 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main fontconfig-config all 2.11.0-6.3 [273 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main libfontconfig1 armhf 2.11.0-6.3 [311 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main fontconfig armhf 2.11.0-6.3 [402 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.2.1-3 [18.5 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.44.1-1.1 [2312 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:31 http://172.17.0.1/private/ stretch-staging/main libgfortran3 armhf 5.2.1-17+rpi1 [154 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:33 http://172.17.0.1/private/ stretch-staging/main libthai-data all 0.1.22-2 [161 kB]
Get:34 http://172.17.0.1/private/ stretch-staging/main libdatrie1 armhf 0.2.9-2 [31.5 kB]
Get:35 http://172.17.0.1/private/ stretch-staging/main libthai0 armhf 0.1.22-2 [44.8 kB]
Get:36 http://172.17.0.1/private/ stretch-staging/main libpango-1.0-0 armhf 1.36.8-3 [274 kB]
Get:37 http://172.17.0.1/private/ stretch-staging/main libpixman-1-0 armhf 0.33.2-2 [444 kB]
Get:38 http://172.17.0.1/private/ stretch-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:39 http://172.17.0.1/private/ stretch-staging/main libxdmcp6 armhf 1:1.1.2-1 [25.0 kB]
Get:40 http://172.17.0.1/private/ stretch-staging/main libxcb1 armhf 1.10-3+b1 [40.6 kB]
Get:41 http://172.17.0.1/private/ stretch-staging/main libx11-data all 2:1.6.3-1 [128 kB]
Get:42 http://172.17.0.1/private/ stretch-staging/main libx11-6 armhf 2:1.6.3-1 [678 kB]
Get:43 http://172.17.0.1/private/ stretch-staging/main libxcb-render0 armhf 1.10-3+b1 [16.9 kB]
Get:44 http://172.17.0.1/private/ stretch-staging/main libxcb-shm0 armhf 1.10-3+b1 [11.4 kB]
Get:45 http://172.17.0.1/private/ stretch-staging/main libxext6 armhf 2:1.3.3-1 [48.1 kB]
Get:46 http://172.17.0.1/private/ stretch-staging/main libxrender1 armhf 1:0.9.8-1+b1 [28.4 kB]
Get:47 http://172.17.0.1/private/ stretch-staging/main libcairo2 armhf 1.14.2-2 [672 kB]
Get:48 http://172.17.0.1/private/ stretch-staging/main libgraphite2-3 armhf 1.3.3-1 [61.1 kB]
Get:49 http://172.17.0.1/private/ stretch-staging/main libharfbuzz0b armhf 1.0.1-1+b1 [501 kB]
Get:50 http://172.17.0.1/private/ stretch-staging/main libpangoft2-1.0-0 armhf 1.36.8-3 [207 kB]
Get:51 http://172.17.0.1/private/ stretch-staging/main libpangocairo-1.0-0 armhf 1.36.8-3 [197 kB]
Get:52 http://172.17.0.1/private/ stretch-staging/main libpaper1 armhf 1.1.24+nmu4 [21.4 kB]
Get:53 http://172.17.0.1/private/ stretch-staging/main libpcrecpp0v5 armhf 2:8.35-7.2 [141 kB]
Get:54 http://172.17.0.1/private/ stretch-staging/main libssh2-1 armhf 1.5.0-2 [122 kB]
Get:55 http://172.17.0.1/private/ stretch-staging/main libtcl8.6 armhf 8.6.4+dfsg-2 [866 kB]
Get:56 http://172.17.0.1/private/ stretch-staging/main libxft2 armhf 2.3.2-1 [48.3 kB]
Get:57 http://172.17.0.1/private/ stretch-staging/main x11-common all 1:7.7+9 [287 kB]
Get:58 http://172.17.0.1/private/ stretch-staging/main libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:59 http://172.17.0.1/private/ stretch-staging/main libtk8.6 armhf 8.6.4+dfsg-2 [664 kB]
Get:60 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:61 http://172.17.0.1/private/ stretch-staging/main libssl1.0.0 armhf 1.0.2d-1 [882 kB]
Get:62 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.24-2 [249 kB]
Get:63 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.24-2 [60.9 kB]
Get:64 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.6-1 [119 kB]
Get:65 http://172.17.0.1/private/ stretch-staging/main libnettle6 armhf 3.1.1-4 [200 kB]
Get:66 http://172.17.0.1/private/ stretch-staging/main libhogweed4 armhf 3.1.1-4 [126 kB]
Get:67 http://172.17.0.1/private/ stretch-staging/main libp11-kit0 armhf 0.23.1-3 [94.2 kB]
Get:68 http://172.17.0.1/private/ stretch-staging/main libgnutls-deb0-28 armhf 3.3.17-1 [646 kB]
Get:69 http://172.17.0.1/private/ stretch-staging/main libkeyutils1 armhf 1.5.9-7 [11.5 kB]
Get:70 http://172.17.0.1/private/ stretch-staging/main libkrb5support0 armhf 1.13.2+dfsg-2 [55.9 kB]
Get:71 http://172.17.0.1/private/ stretch-staging/main libk5crypto3 armhf 1.13.2+dfsg-2 [109 kB]
Get:72 http://172.17.0.1/private/ stretch-staging/main libkrb5-3 armhf 1.13.2+dfsg-2 [260 kB]
Get:73 http://172.17.0.1/private/ stretch-staging/main libgssapi-krb5-2 armhf 1.13.2+dfsg-2 [130 kB]
Get:74 http://172.17.0.1/private/ stretch-staging/main libidn11 armhf 1.32-1 [168 kB]
Get:75 http://172.17.0.1/private/ stretch-staging/main libsasl2-modules-db armhf 2.1.26.dfsg1-14 [65.5 kB]
Get:76 http://172.17.0.1/private/ stretch-staging/main libsasl2-2 armhf 2.1.26.dfsg1-14 [96.8 kB]
Get:77 http://172.17.0.1/private/ stretch-staging/main libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1 [197 kB]
Get:78 http://172.17.0.1/private/ stretch-staging/main openssl armhf 1.0.2d-1 [683 kB]
Get:79 http://172.17.0.1/private/ stretch-staging/main ca-certificates all 20150426 [208 kB]
Get:80 http://172.17.0.1/private/ stretch-staging/main cdbs all 0.4.130 [76.4 kB]
Get:81 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.6-1 [1393 kB]
Get:82 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:83 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:84 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20150811 [817 kB]
Get:85 http://172.17.0.1/private/ stretch-staging/main libgfortran-5-dev armhf 5.2.1-17+rpi1 [183 kB]
Get:86 http://172.17.0.1/private/ stretch-staging/main gfortran-5 armhf 5.2.1-17+rpi1 [23.8 MB]
Get:87 http://172.17.0.1/private/ stretch-staging/main gfortran armhf 4:5.2.1-4+rpi2 [1364 B]
Get:88 http://172.17.0.1/private/ stretch-staging/main libblas-common armhf 1.2.20110419-10 [8494 B]
Get:89 http://172.17.0.1/private/ stretch-staging/main libblas3 armhf 1.2.20110419-10 [120 kB]
Get:90 http://172.17.0.1/private/ stretch-staging/main libblas-dev armhf 1.2.20110419-10 [117 kB]
Get:91 http://172.17.0.1/private/ stretch-staging/main libbz2-dev armhf 1.0.6-8 [27.8 kB]
Get:92 http://172.17.0.1/private/ stretch-staging/main librtmp1 armhf 2.4+20150115.gita107cef-1+b1 [54.5 kB]
Get:93 http://172.17.0.1/private/ stretch-staging/main libcurl3 armhf 7.44.0-2 [238 kB]
Get:94 http://172.17.0.1/private/ stretch-staging/main libice6 armhf 2:1.0.9-1+b1 [51.9 kB]
Get:95 http://172.17.0.1/private/ stretch-staging/main libjpeg62-turbo armhf 1:1.4.1-2 [103 kB]
Get:96 http://172.17.0.1/private/ stretch-staging/main libjpeg62-turbo-dev armhf 1:1.4.1-2 [415 kB]
Get:97 http://172.17.0.1/private/ stretch-staging/main libjpeg-dev all 1:1.4.1-2 [51.9 kB]
Get:98 http://172.17.0.1/private/ stretch-staging/main liblapack3 armhf 3.5.0-4 [1316 kB]
Get:99 http://172.17.0.1/private/ stretch-staging/main liblapack-dev armhf 3.5.0-4 [1364 kB]
Get:100 http://172.17.0.1/private/ stretch-staging/main liblzma-dev armhf 5.1.1alpha+20120614-2.1 [248 kB]
Get:101 http://172.17.0.1/private/ stretch-staging/main libtinfo-dev armhf 6.0+20150810-1 [65.8 kB]
Get:102 http://172.17.0.1/private/ stretch-staging/main libncurses5-dev armhf 6.0+20150810-1 [154 kB]
Get:103 http://172.17.0.1/private/ stretch-staging/main libpaper-utils armhf 1.1.24+nmu4 [17.2 kB]
Get:104 http://172.17.0.1/private/ stretch-staging/main libpcre16-3 armhf 2:8.35-7.2 [221 kB]
Get:105 http://172.17.0.1/private/ stretch-staging/main libpcre32-3 armhf 2:8.35-7.2 [214 kB]
Get:106 http://172.17.0.1/private/ stretch-staging/main libpcre3-dev armhf 2:8.35-7.2 [546 kB]
Get:107 http://172.17.0.1/private/ stretch-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:108 http://172.17.0.1/private/ stretch-staging/main libpng12-dev armhf 1.2.50-2+b2 [236 kB]
Get:109 http://172.17.0.1/private/ stretch-staging/main libreadline6-dev armhf 6.3-8+b3 [105 kB]
Get:110 http://172.17.0.1/private/ stretch-staging/main libreadline-dev armhf 6.3-8+b3 [958 B]
Get:111 http://172.17.0.1/private/ stretch-staging/main libsm6 armhf 2:1.2.2-1+b1 [31.2 kB]
Get:112 http://172.17.0.1/private/ stretch-staging/main libtiff5 armhf 4.0.5-1 [200 kB]
Get:113 http://172.17.0.1/private/ stretch-staging/main libxt6 armhf 1:1.1.4-1+b1 [154 kB]
Get:114 http://172.17.0.1/private/ stretch-staging/main zip armhf 3.0-11 [212 kB]
Get:115 http://172.17.0.1/private/ stretch-staging/main unzip armhf 6.0-18 [142 kB]
Get:116 http://172.17.0.1/private/ stretch-staging/main xdg-utils all 1.1.0~rc3+git20150922-1 [69.2 kB]
Get:117 http://172.17.0.1/private/ stretch-staging/main r-base-core armhf 3.2.2-1 [20.2 MB]
Get:118 http://172.17.0.1/private/ stretch-staging/main r-base-dev all 3.2.2-1 [4292 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 153 MB in 42s (3621 kB/s)
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12875 files and directories currently installed.)
Preparing to unpack .../libpcre3_2%3a8.35-7.2_armhf.deb ...
Unpacking libpcre3:armhf (2:8.35-7.2) over (2:8.35-7.1) ...
Setting up libpcre3:armhf (2:8.35-7.2) ...
Processing triggers for libc-bin (2.19-19) ...
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12875 files and directories currently installed.)
Preparing to unpack .../libgomp1_5.2.1-17+rpi1_armhf.deb ...
Unpacking libgomp1:armhf (5.2.1-17+rpi1) over (5.2.1-16+rpi1) ...
Preparing to unpack .../libatomic1_5.2.1-17+rpi1_armhf.deb ...
Unpacking libatomic1:armhf (5.2.1-17+rpi1) over (5.2.1-16+rpi1) ...
Preparing to unpack .../libasan2_5.2.1-17+rpi1_armhf.deb ...
Unpacking libasan2:armhf (5.2.1-17+rpi1) over (5.2.1-16+rpi1) ...
Preparing to unpack .../libubsan0_5.2.1-17+rpi1_armhf.deb ...
Unpacking libubsan0:armhf (5.2.1-17+rpi1) over (5.2.1-16+rpi1) ...
Preparing to unpack .../cpp-5_5.2.1-17+rpi1_armhf.deb ...
Unpacking cpp-5 (5.2.1-17+rpi1) over (5.2.1-16+rpi1) ...
Preparing to unpack .../libcc1-0_5.2.1-17+rpi1_armhf.deb ...
Unpacking libcc1-0:armhf (5.2.1-17+rpi1) over (5.2.1-16+rpi1) ...
Preparing to unpack .../g++-5_5.2.1-17+rpi1_armhf.deb ...
Unpacking g++-5 (5.2.1-17+rpi1) over (5.2.1-16+rpi1) ...
Preparing to unpack .../gcc-5_5.2.1-17+rpi1_armhf.deb ...
Unpacking gcc-5 (5.2.1-17+rpi1) over (5.2.1-16+rpi1) ...
Preparing to unpack .../libgcc-5-dev_5.2.1-17+rpi1_armhf.deb ...
Unpacking libgcc-5-dev:armhf (5.2.1-17+rpi1) over (5.2.1-16+rpi1) ...
Preparing to unpack .../gcc-5-base_5.2.1-17+rpi1_armhf.deb ...
Unpacking gcc-5-base:armhf (5.2.1-17+rpi1) over (5.2.1-16+rpi1) ...
Setting up gcc-5-base:armhf (5.2.1-17+rpi1) ...
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12903 files and directories currently installed.)
Preparing to unpack .../libstdc++6_5.2.1-17+rpi1_armhf.deb ...
Unpacking libstdc++6:armhf (5.2.1-17+rpi1) over (5.2.1-16+rpi1) ...
Setting up libstdc++6:armhf (5.2.1-17+rpi1) ...
Processing triggers for libc-bin (2.19-19) ...
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12903 files and directories currently installed.)
Preparing to unpack .../libstdc++-5-dev_5.2.1-17+rpi1_armhf.deb ...
Unpacking libstdc++-5-dev:armhf (5.2.1-17+rpi1) over (5.2.1-16+rpi1) ...
Preparing to unpack .../libgcc1_1%3a5.2.1-17+rpi1_armhf.deb ...
Unpacking libgcc1:armhf (1:5.2.1-17+rpi1) over (1:5.2.1-16+rpi1) ...
Setting up libgcc1:armhf (1:5.2.1-17+rpi1) ...
Processing triggers for libc-bin (2.19-19) ...
Selecting previously unselected package groff-base.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12904 files and directories currently installed.)
Preparing to unpack .../groff-base_1.22.3-1_armhf.deb ...
Unpacking groff-base (1.22.3-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_9.0.6_armhf.deb ...
Unpacking bsdmainutils (9.0.6) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../libpipeline1_1.4.1-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../man-db_2.7.3-1_armhf.deb ...
Unpacking man-db (2.7.3-1) ...
Selecting previously unselected package libtasn1-6:armhf.
Preparing to unpack .../libtasn1-6_4.5-2_armhf.deb ...
Unpacking libtasn1-6:armhf (4.5-2) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../libxml2_2.9.1+dfsg1-5_armhf.deb ...
Unpacking libxml2:armhf (2.9.1+dfsg1-5) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../libexpat1_2.1.0-7_armhf.deb ...
Unpacking libexpat1:armhf (2.1.0-7) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../libfreetype6_2.6-2_armhf.deb ...
Unpacking libfreetype6:armhf (2.6-2) ...
Selecting previously unselected package ucf.
Preparing to unpack .../archives/ucf_3.0030_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0030) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../fonts-dejavu-core_2.35-1_all.deb ...
Unpacking fonts-dejavu-core (2.35-1) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../fontconfig-config_2.11.0-6.3_all.deb ...
Unpacking fontconfig-config (2.11.0-6.3) ...
Selecting previously unselected package libfontconfig1:armhf.
Preparing to unpack .../libfontconfig1_2.11.0-6.3_armhf.deb ...
Unpacking libfontconfig1:armhf (2.11.0-6.3) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../fontconfig_2.11.0-6.3_armhf.deb ...
Unpacking fontconfig (2.11.0-6.3) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../libffi6_3.2.1-3_armhf.deb ...
Unpacking libffi6:armhf (3.2.1-3) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../libglib2.0-0_2.44.1-1.1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.44.1-1.1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../libcroco3_0.6.8-3_armhf.deb ...
Unpacking libcroco3:armhf (0.6.8-3) ...
Selecting previously unselected package libgfortran3:armhf.
Preparing to unpack .../libgfortran3_5.2.1-17+rpi1_armhf.deb ...
Unpacking libgfortran3:armhf (5.2.1-17+rpi1) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../libjbig0_2.1-3.1_armhf.deb ...
Unpacking libjbig0:armhf (2.1-3.1) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../libthai-data_0.1.22-2_all.deb ...
Unpacking libthai-data (0.1.22-2) ...
Selecting previously unselected package libdatrie1:armhf.
Preparing to unpack .../libdatrie1_0.2.9-2_armhf.deb ...
Unpacking libdatrie1:armhf (0.2.9-2) ...
Selecting previously unselected package libthai0:armhf.
Preparing to unpack .../libthai0_0.1.22-2_armhf.deb ...
Unpacking libthai0:armhf (0.1.22-2) ...
Selecting previously unselected package libpango-1.0-0:armhf.
Preparing to unpack .../libpango-1.0-0_1.36.8-3_armhf.deb ...
Unpacking libpango-1.0-0:armhf (1.36.8-3) ...
Selecting previously unselected package libpixman-1-0:armhf.
Preparing to unpack .../libpixman-1-0_0.33.2-2_armhf.deb ...
Unpacking libpixman-1-0:armhf (0.33.2-2) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../libxau6_1%3a1.0.8-1_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.8-1) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../libxdmcp6_1%3a1.1.2-1_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-1) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../libxcb1_1.10-3+b1_armhf.deb ...
Unpacking libxcb1:armhf (1.10-3+b1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../libx11-data_2%3a1.6.3-1_all.deb ...
Unpacking libx11-data (2:1.6.3-1) ...
Selecting previously unselected package libx11-6:armhf.
Preparing to unpack .../libx11-6_2%3a1.6.3-1_armhf.deb ...
Unpacking libx11-6:armhf (2:1.6.3-1) ...
Selecting previously unselected package libxcb-render0:armhf.
Preparing to unpack .../libxcb-render0_1.10-3+b1_armhf.deb ...
Unpacking libxcb-render0:armhf (1.10-3+b1) ...
Selecting previously unselected package libxcb-shm0:armhf.
Preparing to unpack .../libxcb-shm0_1.10-3+b1_armhf.deb ...
Unpacking libxcb-shm0:armhf (1.10-3+b1) ...
Selecting previously unselected package libxext6:armhf.
Preparing to unpack .../libxext6_2%3a1.3.3-1_armhf.deb ...
Unpacking libxext6:armhf (2:1.3.3-1) ...
Selecting previously unselected package libxrender1:armhf.
Preparing to unpack .../libxrender1_1%3a0.9.8-1+b1_armhf.deb ...
Unpacking libxrender1:armhf (1:0.9.8-1+b1) ...
Selecting previously unselected package libcairo2:armhf.
Preparing to unpack .../libcairo2_1.14.2-2_armhf.deb ...
Unpacking libcairo2:armhf (1.14.2-2) ...
Selecting previously unselected package libgraphite2-3:armhf.
Preparing to unpack .../libgraphite2-3_1.3.3-1_armhf.deb ...
Unpacking libgraphite2-3:armhf (1.3.3-1) ...
Selecting previously unselected package libharfbuzz0b:armhf.
Preparing to unpack .../libharfbuzz0b_1.0.1-1+b1_armhf.deb ...
Unpacking libharfbuzz0b:armhf (1.0.1-1+b1) ...
Selecting previously unselected package libpangoft2-1.0-0:armhf.
Preparing to unpack .../libpangoft2-1.0-0_1.36.8-3_armhf.deb ...
Unpacking libpangoft2-1.0-0:armhf (1.36.8-3) ...
Selecting previously unselected package libpangocairo-1.0-0:armhf.
Preparing to unpack .../libpangocairo-1.0-0_1.36.8-3_armhf.deb ...
Unpacking libpangocairo-1.0-0:armhf (1.36.8-3) ...
Selecting previously unselected package libpaper1:armhf.
Preparing to unpack .../libpaper1_1.1.24+nmu4_armhf.deb ...
Unpacking libpaper1:armhf (1.1.24+nmu4) ...
Selecting previously unselected package libpcrecpp0v5:armhf.
Preparing to unpack .../libpcrecpp0v5_2%3a8.35-7.2_armhf.deb ...
Unpacking libpcrecpp0v5:armhf (2:8.35-7.2) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../libssh2-1_1.5.0-2_armhf.deb ...
Unpacking libssh2-1:armhf (1.5.0-2) ...
Selecting previously unselected package libtcl8.6:armhf.
Preparing to unpack .../libtcl8.6_8.6.4+dfsg-2_armhf.deb ...
Unpacking libtcl8.6:armhf (8.6.4+dfsg-2) ...
Selecting previously unselected package libxft2:armhf.
Preparing to unpack .../libxft2_2.3.2-1_armhf.deb ...
Unpacking libxft2:armhf (2.3.2-1) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../x11-common_1%3a7.7+9_all.deb ...
Unpacking x11-common (1:7.7+9) ...
Selecting previously unselected package libxss1:armhf.
Preparing to unpack .../libxss1_1%3a1.2.2-1_armhf.deb ...
Unpacking libxss1:armhf (1:1.2.2-1) ...
Selecting previously unselected package libtk8.6:armhf.
Preparing to unpack .../libtk8.6_8.6.4+dfsg-2_armhf.deb ...
Unpacking libtk8.6:armhf (8.6.4+dfsg-2) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../libunistring0_0.9.3-5.2_armhf.deb ...
Unpacking libunistring0:armhf (0.9.3-5.2) ...
Selecting previously unselected package libssl1.0.0:armhf.
Preparing to unpack .../libssl1.0.0_1.0.2d-1_armhf.deb ...
Unpacking libssl1.0.0:armhf (1.0.2d-1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../libmagic1_1%3a5.24-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.24-2) ...
Selecting previously unselected package file.
Preparing to unpack .../file_1%3a5.24-2_armhf.deb ...
Unpacking file (1:5.24-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../gettext-base_0.19.6-1_armhf.deb ...
Unpacking gettext-base (0.19.6-1) ...
Selecting previously unselected package libnettle6:armhf.
Preparing to unpack .../libnettle6_3.1.1-4_armhf.deb ...
Unpacking libnettle6:armhf (3.1.1-4) ...
Selecting previously unselected package libhogweed4:armhf.
Preparing to unpack .../libhogweed4_3.1.1-4_armhf.deb ...
Unpacking libhogweed4:armhf (3.1.1-4) ...
Selecting previously unselected package libp11-kit0:armhf.
Preparing to unpack .../libp11-kit0_0.23.1-3_armhf.deb ...
Unpacking libp11-kit0:armhf (0.23.1-3) ...
Selecting previously unselected package libgnutls-deb0-28:armhf.
Preparing to unpack .../libgnutls-deb0-28_3.3.17-1_armhf.deb ...
Unpacking libgnutls-deb0-28:armhf (3.3.17-1) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../libkeyutils1_1.5.9-7_armhf.deb ...
Unpacking libkeyutils1:armhf (1.5.9-7) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../libkrb5support0_1.13.2+dfsg-2_armhf.deb ...
Unpacking libkrb5support0:armhf (1.13.2+dfsg-2) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../libk5crypto3_1.13.2+dfsg-2_armhf.deb ...
Unpacking libk5crypto3:armhf (1.13.2+dfsg-2) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../libkrb5-3_1.13.2+dfsg-2_armhf.deb ...
Unpacking libkrb5-3:armhf (1.13.2+dfsg-2) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../libgssapi-krb5-2_1.13.2+dfsg-2_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.13.2+dfsg-2) ...
Selecting previously unselected package libidn11:armhf.
Preparing to unpack .../libidn11_1.32-1_armhf.deb ...
Unpacking libidn11:armhf (1.32-1) ...
Selecting previously unselected package libsasl2-modules-db:armhf.
Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-14_armhf.deb ...
Unpacking libsasl2-modules-db:armhf (2.1.26.dfsg1-14) ...
Selecting previously unselected package libsasl2-2:armhf.
Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-14_armhf.deb ...
Unpacking libsasl2-2:armhf (2.1.26.dfsg1-14) ...
Selecting previously unselected package libldap-2.4-2:armhf.
Preparing to unpack .../libldap-2.4-2_2.4.42+dfsg-2+rpi1_armhf.deb ...
Unpacking libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1) ...
Selecting previously unselected package openssl.
Preparing to unpack .../openssl_1.0.2d-1_armhf.deb ...
Unpacking openssl (1.0.2d-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../ca-certificates_20150426_all.deb ...
Unpacking ca-certificates (20150426) ...
Selecting previously unselected package cdbs.
Preparing to unpack .../archives/cdbs_0.4.130_all.deb ...
Unpacking cdbs (0.4.130) ...
Selecting previously unselected package gettext.
Preparing to unpack .../gettext_0.19.6-1_armhf.deb ...
Unpacking gettext (0.19.6-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../po-debconf_1.0.18_all.deb ...
Unpacking po-debconf (1.0.18) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../debhelper_9.20150811_all.deb ...
Unpacking debhelper (9.20150811) ...
Selecting previously unselected package libgfortran-5-dev:armhf.
Preparing to unpack .../libgfortran-5-dev_5.2.1-17+rpi1_armhf.deb ...
Unpacking libgfortran-5-dev:armhf (5.2.1-17+rpi1) ...
Selecting previously unselected package gfortran-5.
Preparing to unpack .../gfortran-5_5.2.1-17+rpi1_armhf.deb ...
Unpacking gfortran-5 (5.2.1-17+rpi1) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../gfortran_4%3a5.2.1-4+rpi2_armhf.deb ...
Unpacking gfortran (4:5.2.1-4+rpi2) ...
Selecting previously unselected package libblas-common.
Preparing to unpack .../libblas-common_1.2.20110419-10_armhf.deb ...
Unpacking libblas-common (1.2.20110419-10) ...
Selecting previously unselected package libblas3.
Preparing to unpack .../libblas3_1.2.20110419-10_armhf.deb ...
Unpacking libblas3 (1.2.20110419-10) ...
Selecting previously unselected package libblas-dev.
Preparing to unpack .../libblas-dev_1.2.20110419-10_armhf.deb ...
Unpacking libblas-dev (1.2.20110419-10) ...
Selecting previously unselected package libbz2-dev:armhf.
Preparing to unpack .../libbz2-dev_1.0.6-8_armhf.deb ...
Unpacking libbz2-dev:armhf (1.0.6-8) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../librtmp1_2.4+20150115.gita107cef-1+b1_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20150115.gita107cef-1+b1) ...
Selecting previously unselected package libcurl3:armhf.
Preparing to unpack .../libcurl3_7.44.0-2_armhf.deb ...
Unpacking libcurl3:armhf (7.44.0-2) ...
Selecting previously unselected package libice6:armhf.
Preparing to unpack .../libice6_2%3a1.0.9-1+b1_armhf.deb ...
Unpacking libice6:armhf (2:1.0.9-1+b1) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../libjpeg62-turbo_1%3a1.4.1-2_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:1.4.1-2) ...
Selecting previously unselected package libjpeg62-turbo-dev:armhf.
Preparing to unpack .../libjpeg62-turbo-dev_1%3a1.4.1-2_armhf.deb ...
Unpacking libjpeg62-turbo-dev:armhf (1:1.4.1-2) ...
Selecting previously unselected package libjpeg-dev.
Preparing to unpack .../libjpeg-dev_1%3a1.4.1-2_all.deb ...
Unpacking libjpeg-dev (1:1.4.1-2) ...
Selecting previously unselected package liblapack3.
Preparing to unpack .../liblapack3_3.5.0-4_armhf.deb ...
Unpacking liblapack3 (3.5.0-4) ...
Selecting previously unselected package liblapack-dev.
Preparing to unpack .../liblapack-dev_3.5.0-4_armhf.deb ...
Unpacking liblapack-dev (3.5.0-4) ...
Selecting previously unselected package liblzma-dev:armhf.
Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2.1_armhf.deb ...
Unpacking liblzma-dev:armhf (5.1.1alpha+20120614-2.1) ...
Selecting previously unselected package libtinfo-dev:armhf.
Preparing to unpack .../libtinfo-dev_6.0+20150810-1_armhf.deb ...
Unpacking libtinfo-dev:armhf (6.0+20150810-1) ...
Selecting previously unselected package libncurses5-dev:armhf.
Preparing to unpack .../libncurses5-dev_6.0+20150810-1_armhf.deb ...
Unpacking libncurses5-dev:armhf (6.0+20150810-1) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../libpaper-utils_1.1.24+nmu4_armhf.deb ...
Unpacking libpaper-utils (1.1.24+nmu4) ...
Selecting previously unselected package libpcre16-3:armhf.
Preparing to unpack .../libpcre16-3_2%3a8.35-7.2_armhf.deb ...
Unpacking libpcre16-3:armhf (2:8.35-7.2) ...
Selecting previously unselected package libpcre32-3:armhf.
Preparing to unpack .../libpcre32-3_2%3a8.35-7.2_armhf.deb ...
Unpacking libpcre32-3:armhf (2:8.35-7.2) ...
Selecting previously unselected package libpcre3-dev:armhf.
Preparing to unpack .../libpcre3-dev_2%3a8.35-7.2_armhf.deb ...
Unpacking libpcre3-dev:armhf (2:8.35-7.2) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2+b1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Selecting previously unselected package libpng12-dev:armhf.
Preparing to unpack .../libpng12-dev_1.2.50-2+b2_armhf.deb ...
Unpacking libpng12-dev:armhf (1.2.50-2+b2) ...
Selecting previously unselected package libreadline6-dev:armhf.
Preparing to unpack .../libreadline6-dev_6.3-8+b3_armhf.deb ...
Unpacking libreadline6-dev:armhf (6.3-8+b3) ...
Selecting previously unselected package libreadline-dev:armhf.
Preparing to unpack .../libreadline-dev_6.3-8+b3_armhf.deb ...
Unpacking libreadline-dev:armhf (6.3-8+b3) ...
Selecting previously unselected package libsm6:armhf.
Preparing to unpack .../libsm6_2%3a1.2.2-1+b1_armhf.deb ...
Unpacking libsm6:armhf (2:1.2.2-1+b1) ...
Selecting previously unselected package libtiff5:armhf.
Preparing to unpack .../libtiff5_4.0.5-1_armhf.deb ...
Unpacking libtiff5:armhf (4.0.5-1) ...
Selecting previously unselected package libxt6:armhf.
Preparing to unpack .../libxt6_1%3a1.1.4-1+b1_armhf.deb ...
Unpacking libxt6:armhf (1:1.1.4-1+b1) ...
Selecting previously unselected package zip.
Preparing to unpack .../archives/zip_3.0-11_armhf.deb ...
Unpacking zip (3.0-11) ...
Selecting previously unselected package unzip.
Preparing to unpack .../unzip_6.0-18_armhf.deb ...
Unpacking unzip (6.0-18) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../xdg-utils_1.1.0~rc3+git20150922-1_all.deb ...
Unpacking xdg-utils (1.1.0~rc3+git20150922-1) ...
Selecting previously unselected package r-base-core.
Preparing to unpack .../r-base-core_3.2.2-1_armhf.deb ...
Unpacking r-base-core (3.2.2-1) ...
Selecting previously unselected package r-base-dev.
Preparing to unpack .../r-base-dev_3.2.2-1_all.deb ...
Unpacking r-base-dev (3.2.2-1) ...
Selecting previously unselected package sbuild-build-depends-r-cran-qtl-dummy.
Preparing to unpack .../sbuild-build-depends-r-cran-qtl-dummy.deb ...
Unpacking sbuild-build-depends-r-cran-qtl-dummy (0.invalid.0) ...
Processing triggers for systemd (225-1) ...
Setting up libgomp1:armhf (5.2.1-17+rpi1) ...
Setting up libatomic1:armhf (5.2.1-17+rpi1) ...
Setting up libasan2:armhf (5.2.1-17+rpi1) ...
Setting up libubsan0:armhf (5.2.1-17+rpi1) ...
Setting up cpp-5 (5.2.1-17+rpi1) ...
Setting up libcc1-0:armhf (5.2.1-17+rpi1) ...
Setting up libgcc-5-dev:armhf (5.2.1-17+rpi1) ...
Setting up gcc-5 (5.2.1-17+rpi1) ...
Setting up libstdc++-5-dev:armhf (5.2.1-17+rpi1) ...
Setting up g++-5 (5.2.1-17+rpi1) ...
Setting up groff-base (1.22.3-1) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-1) ...
Setting up man-db (2.7.3-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtasn1-6:armhf (4.5-2) ...
Setting up libxml2:armhf (2.9.1+dfsg1-5) ...
Setting up libexpat1:armhf (2.1.0-7) ...
Setting up libfreetype6:armhf (2.6-2) ...
Setting up ucf (3.0030) ...
Setting up fonts-dejavu-core (2.35-1) ...
Setting up fontconfig-config (2.11.0-6.3) ...
Setting up libfontconfig1:armhf (2.11.0-6.3) ...
Setting up fontconfig (2.11.0-6.3) ...
Regenerating fonts cache... done.
Setting up libffi6:armhf (3.2.1-3) ...
Setting up libglib2.0-0:armhf (2.44.1-1.1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-3) ...
Setting up libgfortran3:armhf (5.2.1-17+rpi1) ...
Setting up libjbig0:armhf (2.1-3.1) ...
Setting up libthai-data (0.1.22-2) ...
Setting up libdatrie1:armhf (0.2.9-2) ...
Setting up libthai0:armhf (0.1.22-2) ...
Setting up libpango-1.0-0:armhf (1.36.8-3) ...
Setting up libpixman-1-0:armhf (0.33.2-2) ...
Setting up libxau6:armhf (1:1.0.8-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-1) ...
Setting up libxcb1:armhf (1.10-3+b1) ...
Setting up libx11-data (2:1.6.3-1) ...
Setting up libx11-6:armhf (2:1.6.3-1) ...
Setting up libxcb-render0:armhf (1.10-3+b1) ...
Setting up libxcb-shm0:armhf (1.10-3+b1) ...
Setting up libxext6:armhf (2:1.3.3-1) ...
Setting up libxrender1:armhf (1:0.9.8-1+b1) ...
Setting up libcairo2:armhf (1.14.2-2) ...
Setting up libgraphite2-3:armhf (1.3.3-1) ...
Setting up libharfbuzz0b:armhf (1.0.1-1+b1) ...
Setting up libpangoft2-1.0-0:armhf (1.36.8-3) ...
Setting up libpangocairo-1.0-0:armhf (1.36.8-3) ...
Setting up libpaper1:armhf (1.1.24+nmu4) ...
Creating config file /etc/papersize with new version
Setting up libpcrecpp0v5:armhf (2:8.35-7.2) ...
Setting up libssh2-1:armhf (1.5.0-2) ...
Setting up libtcl8.6:armhf (8.6.4+dfsg-2) ...
Setting up libxft2:armhf (2.3.2-1) ...
Setting up x11-common (1:7.7+9) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libtk8.6:armhf (8.6.4+dfsg-2) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libssl1.0.0:armhf (1.0.2d-1) ...
Setting up libmagic1:armhf (1:5.24-2) ...
Setting up file (1:5.24-2) ...
Setting up gettext-base (0.19.6-1) ...
Setting up libnettle6:armhf (3.1.1-4) ...
Setting up libhogweed4:armhf (3.1.1-4) ...
Setting up libp11-kit0:armhf (0.23.1-3) ...
Setting up libgnutls-deb0-28:armhf (3.3.17-1) ...
Setting up libkeyutils1:armhf (1.5.9-7) ...
Setting up libkrb5support0:armhf (1.13.2+dfsg-2) ...
Setting up libk5crypto3:armhf (1.13.2+dfsg-2) ...
Setting up libkrb5-3:armhf (1.13.2+dfsg-2) ...
Setting up libgssapi-krb5-2:armhf (1.13.2+dfsg-2) ...
Setting up libidn11:armhf (1.32-1) ...
Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-14) ...
Setting up libsasl2-2:armhf (2.1.26.dfsg1-14) ...
Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1) ...
Setting up openssl (1.0.2d-1) ...
Setting up ca-certificates (20150426) ...
Setting up cdbs (0.4.130) ...
Setting up gettext (0.19.6-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.18) ...
Setting up debhelper (9.20150811) ...
Setting up libgfortran-5-dev:armhf (5.2.1-17+rpi1) ...
Setting up gfortran-5 (5.2.1-17+rpi1) ...
Setting up gfortran (4:5.2.1-4+rpi2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libblas-common (1.2.20110419-10) ...
Setting up libblas3 (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libbz2-dev:armhf (1.0.6-8) ...
Setting up librtmp1:armhf (2.4+20150115.gita107cef-1+b1) ...
Setting up libcurl3:armhf (7.44.0-2) ...
Setting up libice6:armhf (2:1.0.9-1+b1) ...
Setting up libjpeg62-turbo:armhf (1:1.4.1-2) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.4.1-2) ...
Setting up libjpeg-dev (1:1.4.1-2) ...
Setting up liblapack3 (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up liblapack-dev (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up liblzma-dev:armhf (5.1.1alpha+20120614-2.1) ...
Setting up libtinfo-dev:armhf (6.0+20150810-1) ...
Setting up libncurses5-dev:armhf (6.0+20150810-1) ...
Setting up libpaper-utils (1.1.24+nmu4) ...
Setting up libpcre16-3:armhf (2:8.35-7.2) ...
Setting up libpcre32-3:armhf (2:8.35-7.2) ...
Setting up libpcre3-dev:armhf (2:8.35-7.2) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Setting up libpng12-dev:armhf (1.2.50-2+b2) ...
Setting up libreadline6-dev:armhf (6.3-8+b3) ...
Setting up libreadline-dev:armhf (6.3-8+b3) ...
Setting up libsm6:armhf (2:1.2.2-1+b1) ...
Setting up libtiff5:armhf (4.0.5-1) ...
Setting up libxt6:armhf (1:1.1.4-1+b1) ...
Setting up zip (3.0-11) ...
Setting up unzip (6.0-18) ...
Setting up xdg-utils (1.1.0~rc3+git20150922-1) ...
Setting up r-base-core (3.2.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (3.2.2-1) ...
Setting up sbuild-build-depends-r-cran-qtl-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-19) ...
Processing triggers for systemd (225-1) ...
Processing triggers for ca-certificates (20150426) ...
Updating certificates in /etc/ssl/certs...
180 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.1-1 dpkg-dev_1.18.2 g++-4.9_4.9.3-4 g++-5_5.2.1-17+rpi1 gcc-4.9_4.9.3-4 gcc-5_5.2.1-17+rpi1 libc6-dev_2.19-19 libstdc++-4.9-dev_4.9.3-4 libstdc++-5-dev_5.2.1-17+rpi1 libstdc++6_5.2.1-17+rpi1 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.10.2 base-files_9.4+rpi1 base-passwd_3.5.38 bash_4.3-14 binutils_2.25.1-1 bsdmainutils_9.0.6 bsdutils_1:2.26.2-9 build-essential_11.7 bzip2_1.0.6-8 ca-certificates_20150426 cdbs_0.4.130 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.2.1-4+rpi2 cpp-4.9_4.9.3-4 cpp-5_5.2.1-17+rpi1 dash_0.5.7-4 debconf_1.5.57 debfoster_2.7-2 debhelper_9.20150811 debianutils_4.5.1 diffutils_1:3.3-1 dmsetup_2:1.02.104-1 dpkg_1.18.2 dpkg-dev_1.18.2 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.24-2 findutils_4.4.2-9 fontconfig_2.11.0-6.3 fontconfig-config_2.11.0-6.3 fonts-dejavu-core_2.35-1 g++_4:5.2.1-4+rpi2 g++-4.9_4.9.3-4 g++-5_5.2.1-17+rpi1 gcc_4:5.2.1-4+rpi2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-4 gcc-4.9_4.9.3-4 gcc-4.9-base_4.9.3-4 gcc-5_5.2.1-17+rpi1 gcc-5-base_5.2.1-17+rpi1 gettext_0.19.6-1 gettext-base_0.19.6-1 gfortran_4:5.2.1-4+rpi2 gfortran-5_5.2.1-17+rpi1 gnupg_1.4.19-5 gpgv_1.4.19-5 grep_2.21-2 groff-base_1.22.3-1 gzip_1.6-4 hostname_3.16 init_1.23 init-system-helpers_1.23 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-2+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.9.2-3 libapt-pkg4.12_1.0.9.10 libapt-pkg4.16_1.0.10.2 libasan1_4.9.3-4 libasan2_5.2.1-17+rpi1 libatomic1_5.2.1-17+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-1 libaudit1_1:2.4.4-1 libblas-common_1.2.20110419-10 libblas-dev_1.2.20110419-10 libblas3_1.2.20110419-10 libblkid1_2.26.2-9 libbz2-1.0_1.0.6-8 libbz2-dev_1.0.6-8 libc-bin_2.19-19 libc-dev-bin_2.19-19 libc6_2.19-19 libc6-dev_2.19-19 libcairo2_1.14.2-2 libcap2_1:2.24-11 libcap2-bin_1:2.24-11 libcc1-0_5.2.1-17+rpi1 libcloog-isl4_0.18.3-1 libcomerr2_1.42.13-1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libcurl3_7.44.0-2 libdatrie1_0.2.9-2 libdb5.3_5.3.28-11 libdbus-1-3_1.8.20-1 libdebconfclient0_0.195 libdevmapper1.02.1_2:1.02.104-1 libdpkg-perl_1.18.2 libdrm2_2.4.64-1 libexpat1_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.26.2-9 libffi6_3.2.1-3 libfontconfig1_2.11.0-6.3 libfreetype6_2.6-2 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.3-4 libgcc-5-dev_5.2.1-17+rpi1 libgcc1_1:5.2.1-17+rpi1 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libgfortran-5-dev_5.2.1-17+rpi1 libgfortran3_5.2.1-17+rpi1 libglib2.0-0_2.44.1-1.1 libgmp10_2:6.0.0+dfsg-7+rpi1 libgnutls-deb0-28_3.3.17-1 libgomp1_5.2.1-17+rpi1 libgpg-error0_1.19-2 libgraphite2-3_1.3.3-1 libgssapi-krb5-2_1.13.2+dfsg-2 libharfbuzz0b_1.0.1-1+b1 libhogweed4_3.1.1-4 libice6_2:1.0.9-1+b1 libidn11_1.32-1 libisl13_0.14-2 libjbig0_2.1-3.1 libjpeg-dev_1:1.4.1-2 libjpeg62-turbo_1:1.4.1-2 libjpeg62-turbo-dev_1:1.4.1-2 libk5crypto3_1.13.2+dfsg-2 libkeyutils1_1.5.9-7 libklibc_2.0.4-2+rpi1 libkmod2_21-1 libkrb5-3_1.13.2+dfsg-2 libkrb5support0_1.13.2+dfsg-2 liblapack-dev_3.5.0-4 liblapack3_3.5.0-4 libldap-2.4-2_2.4.42+dfsg-2+rpi1 liblocale-gettext-perl_1.05-9 liblzma-dev_5.1.1alpha+20120614-2.1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.24-2 libmount1_2.26.2-9 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_6.0+20150810-1 libncurses5-dev_6.0+20150810-1 libncursesw5_6.0+20150810-1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpango-1.0-0_1.36.8-3 libpangocairo-1.0-0_1.36.8-3 libpangoft2-1.0-0_1.36.8-3 libpaper-utils_1.1.24+nmu4 libpaper1_1.1.24+nmu4 libpcre16-3_2:8.35-7.2 libpcre3_2:8.35-7.2 libpcre3-dev_2:8.35-7.2 libpcre32-3_2:8.35-7.2 libpcrecpp0v5_2:8.35-7.2 libpipeline1_1.4.1-1 libpixman-1-0_0.33.2-2 libpng12-0_1.2.50-2+b2 libpng12-dev_1.2.50-2+b2 libprocps3_2:3.3.9-9 libprocps4_2:3.3.10-2 libreadline-dev_6.3-8+b3 libreadline6_6.3-8+b3 libreadline6-dev_6.3-8+b3 librtmp1_2.4+20150115.gita107cef-1+b1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libslang2_2.3.0-2+b1 libsm6_2:1.2.2-1+b1 libsmartcols1_2.26.2-9 libss2_1.42.13-1 libssh2-1_1.5.0-2 libssl1.0.0_1.0.2d-1 libstdc++-4.9-dev_4.9.3-4 libstdc++-5-dev_5.2.1-17+rpi1 libstdc++6_5.2.1-17+rpi1 libsystemd0_225-1 libtasn1-6_4.5-2 libtcl8.6_8.6.4+dfsg-2 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7.1 libthai-data_0.1.22-2 libthai0_0.1.22-2 libtiff5_4.0.5-1 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20150810-1 libtinfo5_6.0+20150810-1 libtk8.6_8.6.4+dfsg-2 libubsan0_5.2.1-17+rpi1 libudev1_225-1 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.26.2-9 libx11-6_2:1.6.3-1 libx11-data_2:1.6.3-1 libxau6_1:1.0.8-1 libxcb-render0_1.10-3+b1 libxcb-shm0_1.10-3+b1 libxcb1_1.10-3+b1 libxdmcp6_1:1.1.2-1 libxext6_2:1.3.3-1 libxft2_2.3.2-1 libxml2_2.9.1+dfsg1-5 libxrender1_1:0.9.8-1+b1 libxss1_1:1.2.2-1 libxt6_1:1.1.4-1+b1 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.3-1 mawk_1.3.3-17 mount_2.26.2-9 mountall_2.54 multiarch-support_2.19-19 ncurses-base_6.0+20150810-1 ncurses-bin_6.0+20150810-1 openssl_1.0.2d-1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 plymouth_0.9.0-9 po-debconf_1.0.18 procps_2:3.3.10-2 r-base-core_3.2.2-1 r-base-dev_3.2.2-1 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-qtl-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_225-1 systemd-sysv_225-1 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-1 tzdata_2015f-1 ucf_3.0030 udev_225-1 unzip_6.0-18 util-linux_2.26.2-9 x11-common_1:7.7+9 xdg-utils_1.1.0~rc3+git20150922-1 xz-utils_5.1.1alpha+20120614-2.1 zip_3.0-11 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Tue Sep 22 19:57:01 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-cran-qtl_1.37-11-1.dsc
dpkg-source: info: extracting r-cran-qtl in r-cran-qtl-1.37-11
dpkg-source: info: unpacking r-cran-qtl_1.37-11.orig.tar.gz
dpkg-source: info: unpacking r-cran-qtl_1.37-11-1.debian.tar.xz
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-609f47e5-99cd-4c30-b11f-f547f5e40024
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-cran-qtl
dpkg-buildpackage: source version 1.37-11-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build r-cran-qtl-1.37-11
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
test -x debian/rules
dh_clean
if test -d src; then \
find src -regex ".*\.o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
debian/rules build-arch
test -x debian/rules
mkdir -p "."
fakeroot debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
echo "R:Depends=r-base-core (>= 3.2.2-1), r-api-3" >> debian/r-cran-qtl.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-cran-qtl/usr/lib/R/site-library --clean \
. \
"--built-timestamp=\"Tue, 22 Sep 2015 21:55:04 +0200\"" \
; \
else \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-cran-qtl/usr/lib/R/site-library \
--clean . \
"--built-timestamp=\"Tue, 22 Sep 2015 21:55:04 +0200\"" \
; \
fi
* installing *source* package 'qtl' ...
** package 'qtl' successfully unpacked and MD5 sums checked
** libs
make[1]: Entering directory '/«PKGBUILDDIR»/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c countXO.c -o countXO.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c discan.c -o discan.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c discan_covar.c -o discan_covar.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c effectscan.c -o effectscan.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fill_geno_nodblXO.c -o fill_geno_nodblXO.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c findDupMarkers_notexact.c -o findDupMarkers_notexact.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fitqtl_hk.c -o fitqtl_hk.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fitqtl_hk_binary.c -o fitqtl_hk_binary.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fitqtl_imp.c -o fitqtl_imp.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fitqtl_imp_binary.c -o fitqtl_imp_binary.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c forwsel.c -o forwsel.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hmm_4way.c -o hmm_4way.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hmm_bc.c -o hmm_bc.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hmm_bci.c -o hmm_bci.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hmm_bcsft.c -o hmm_bcsft.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hmm_bgmagic16.c -o hmm_bgmagic16.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hmm_f2.c -o hmm_f2.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hmm_f2i.c -o hmm_f2i.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hmm_main.c -o hmm_main.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hmm_ri4self.c -o hmm_ri4self.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hmm_ri4sib.c -o hmm_ri4sib.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hmm_ri8self.c -o hmm_ri8self.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hmm_ri8selfIRIP1.c -o hmm_ri8selfIRIP1.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hmm_ri8sib.c -o hmm_ri8sib.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hmm_util.c -o hmm_util.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c inferFounderHap.c -o inferFounderHap.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c info.c -o info.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lapackutil.c -o lapackutil.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c markerlrt.c -o markerlrt.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mqmaugment.cpp -o mqmaugment.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mqmdatatypes.cpp -o mqmdatatypes.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mqmeliminate.cpp -o mqmeliminate.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mqmmapqtl.cpp -o mqmmapqtl.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mqmmixture.cpp -o mqmmixture.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mqmprob.cpp -o mqmprob.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mqmregression.cpp -o mqmregression.o
g++ -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mqmscan.cpp -o mqmscan.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pickMarkerSubset.c -o pickMarkerSubset.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ril48_reorg.c -o ril48_reorg.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ripple.c -o ripple.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scanone_ehk.c -o scanone_ehk.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scanone_em.c -o scanone_em.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scanone_em_covar.c -o scanone_em_covar.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scanone_hk.c -o scanone_hk.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scanone_hk_binary.c -o scanone_hk_binary.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scanone_imp.c -o scanone_imp.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scanone_mr.c -o scanone_mr.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scanone_np.c -o scanone_np.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scantwo_binary_em.c -o scantwo_binary_em.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scantwo_binary_hk.c -o scantwo_binary_hk.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scantwo_em.c -o scantwo_em.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scantwo_hk.c -o scantwo_hk.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scantwo_imp.c -o scantwo_imp.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scantwo_mr.c -o scantwo_mr.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scantwopermhk.c -o scantwopermhk.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c simulate.c -o simulate.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c simulate_ril.c -o simulate_ril.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stahl_mf.c -o stahl_mf.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c summary_scantwo.c -o summary_scantwo.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c test_bcsft.c -o test_bcsft.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c vbscan.c -o vbscan.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c zeroin.c -o zeroin.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o qtl.so countXO.o discan.o discan_covar.o effectscan.o fill_geno_nodblXO.o findDupMarkers_notexact.o fitqtl_hk.o fitqtl_hk_binary.o fitqtl_imp.o fitqtl_imp_binary.o forwsel.o hmm_4way.o hmm_bc.o hmm_bci.o hmm_bcsft.o hmm_bgmagic16.o hmm_f2.o hmm_f2i.o hmm_main.o hmm_ri4self.o hmm_ri4sib.o hmm_ri8self.o hmm_ri8selfIRIP1.o hmm_ri8sib.o hmm_util.o inferFounderHap.o info.o lapackutil.o markerlrt.o mqmaugment.o mqmdatatypes.o mqmeliminate.o mqmmapqtl.o mqmmixture.o mqmprob.o mqmregression.o mqmscan.o pickMarkerSubset.o ril48_reorg.o ripple.o scanone_ehk.o scanone_em.o scanone_em_covar.o scanone_hk.o scanone_hk_binary.o scanone_imp.o scanone_mr.o scanone_np.o scantwo_binary_em.o scantwo_binary_hk.o scantwo_em.o scantwo_hk.o scantwo_imp.o scantwo_mr.o scantwopermhk.o simulate.o simulate_ril.o stahl_mf.o summary_scantwo.o test_bcsft.o util.o vbscan.o zeroin.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/«PKGBUILDDIR»/src'
make[1]: Entering directory '/«PKGBUILDDIR»/src'
make[1]: Leaving directory '/«PKGBUILDDIR»/src'
installing to /«PKGBUILDDIR»/debian/r-cran-qtl/usr/lib/R/site-library/qtl/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (qtl)
rm -vf /«PKGBUILDDIR»/debian/r-cran-qtl/usr/lib/R/site-library/R.css \
/«PKGBUILDDIR»/debian/r-cran-qtl/usr/lib/R/site-library/qtl/COPYING \
/«PKGBUILDDIR»/debian/r-cran-qtl/usr/lib/R/site-library/qtl/LICENSE.txt
removed '/«PKGBUILDDIR»/debian/r-cran-qtl/usr/lib/R/site-library/qtl/LICENSE.txt'
if test -f debian/overrides; then \
install -d /«PKGBUILDDIR»/debian/r-cran-qtl/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
/«PKGBUILDDIR»/debian/r-cran-qtl/usr/share/lintian/overrides/r-cran-qtl; \
fi
Adding cdbs dependencies to debian/r-cran-qtl.substvars
dh_installdirs -pr-cran-qtl
mkdir -p debian/r-cran-qtl/usr/share/doc/r-cran-qtl
mv debian/r-cran-qtl/usr/lib/R/site-library/qtl/contrib debian/r-cran-qtl/usr/share/doc/r-cran-qtl/examples
mkdir -p debian/r-cran-qtl/usr/share/doc/r-cran-qtl/tests
cp -a tests/*.R tests/*.csv tests/*.map tests/*.raw tests/*.Rout.save debian/r-cran-qtl/usr/share/doc/r-cran-qtl/tests
dh_installdocs -pr-cran-qtl
dh_installexamples -pr-cran-qtl
dh_installman -pr-cran-qtl
dh_installinfo -pr-cran-qtl
dh_installmenu -pr-cran-qtl
dh_installcron -pr-cran-qtl
dh_installinit -pr-cran-qtl
dh_installdebconf -pr-cran-qtl
dh_installemacsen -pr-cran-qtl
dh_installcatalogs -pr-cran-qtl
dh_installpam -pr-cran-qtl
dh_installlogrotate -pr-cran-qtl
dh_installlogcheck -pr-cran-qtl
dh_installchangelogs -pr-cran-qtl
dh_installudev -pr-cran-qtl
dh_lintian -pr-cran-qtl
dh_bugfiles -pr-cran-qtl
dh_install -pr-cran-qtl
dh_link -pr-cran-qtl
dh_installmime -pr-cran-qtl
dh_installgsettings -pr-cran-qtl
dh_strip -pr-cran-qtl
dh_compress -pr-cran-qtl
dh_fixperms -pr-cran-qtl
dh_makeshlibs -pr-cran-qtl
dh_installdeb -pr-cran-qtl
dh_perl -pr-cran-qtl
dh_shlibdeps -pr-cran-qtl
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-qtl/usr/lib/R/site-library/qtl/libs/qtl.so was not linked against libstdc++.so.6 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-qtl/usr/lib/R/site-library/qtl/libs/qtl.so was not linked against libgfortran.so.3 (it uses none of the library's symbols)
dh_gencontrol -pr-cran-qtl
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -pr-cran-qtl
dh_builddeb -pr-cran-qtl
dpkg-deb: building package 'r-cran-qtl' in '../r-cran-qtl_1.37-11-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-cran-qtl_1.37-11-1_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build r-cran-qtl-1.37-11
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20150928-0711
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
r-cran-qtl_1.37-11-1_armhf.changes:
───────────────────────────────────
Format: 1.8
Date: Tue, 22 Sep 2015 21:55:04 +0200
Source: r-cran-qtl
Binary: r-cran-qtl
Architecture: armhf
Version: 1.37-11-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-cran-qtl - GNU R package for genetic marker linkage analysis
Changes:
r-cran-qtl (1.37-11-1) unstable; urgency=medium
.
* New upstream version
Checksums-Sha1:
523f4c5b518a8a682c66a4f4b029e883756ebbde 4993778 r-cran-qtl_1.37-11-1_armhf.deb
Checksums-Sha256:
c9e02a66a33f4a472a324056c271c99ed2e71b550d663afb9fc7a456a4ef71ac 4993778 r-cran-qtl_1.37-11-1_armhf.deb
Files:
651bfd7cbae2b13ee12308adfac56499 4993778 gnu-r optional r-cran-qtl_1.37-11-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
r-cran-qtl_1.37-11-1_armhf.deb
──────────────────────────────
new debian package, version 2.0.
size 4993778 bytes: control archive=6561 bytes.
1979 bytes, 37 lines control
16217 bytes, 185 lines md5sums
Package: r-cran-qtl
Version: 1.37-11-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 6550
Depends: libblas3 | libblas.so.3, libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3, libstdc++6 (>= 4.1.1), r-base-core (>= 3.2.2-1), r-api-3
Suggests: r-cran-snow
Section: gnu-r
Priority: optional
Homepage: http://www.rqtl.org
Description: GNU R package for genetic marker linkage analysis
R/qtl is an extensible, interactive environment for mapping quantitative
trait loci (QTLs) in experimental crosses. It is implemented as an
add-on-package for the freely available and widely used statistical
language/software R (see http://www.r-project.org).
.
The development of this software as an add-on to R allows one to take
advantage of the basic mathematical and statistical functions, and
powerful graphics capabilities, that are provided with R. Further,
the user will benefit by the seamless integration of the QTL mapping
software into a general statistical analysis program. The goal is to
make complex QTL mapping methods widely accessible and allow users to
focus on modeling rather than computing.
.
A key component of computational methods for QTL mapping is the hidden
Markov model (HMM) technology for dealing with missing genotype data. The
main HMM algorithms, with allowance for the presence of genotyping errors,
for backcrosses, intercrosses, and phase-known four-way crosses
were implemented.
.
The current version of R/qtl includes facilities for estimating
genetic maps, identifying genotyping errors, and performing single-QTL
genome scans and two-QTL, two-dimensional genome scans, by interval
mapping (with the EM algorithm), Haley-Knott regression, and multiple
imputation. All of this may be done in the presence of covariates (such
as sex, age or treatment). One may also fit higher-order QTL models by
multiple imputation.
drwxr-xr-x root/root 0 2015-09-28 07:10 ./
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/
drwxr-xr-x root/root 0 2015-09-28 07:07 ./usr/lib/
drwxr-xr-x root/root 0 2015-09-28 07:07 ./usr/lib/R/
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/
-rw-r--r-- root/root 16916 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/BUGS.txt
-rw-r--r-- root/root 652 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/CITATION
-rw-r--r-- root/root 937 2015-09-28 07:07 ./usr/lib/R/site-library/qtl/DESCRIPTION
-rw-r--r-- root/root 15782 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/INDEX
-rw-r--r-- root/root 5673 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/INSTALL_ME.txt
-rw-r--r-- root/root 1183 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/MQM-TODO.txt
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/Meta/
-rw-r--r-- root/root 7509 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/Meta/Rd.rds
-rw-r--r-- root/root 397 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/Meta/data.rds
-rw-r--r-- root/root 6524 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/Meta/hsearch.rds
-rw-r--r-- root/root 3176 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/Meta/links.rds
-rw-r--r-- root/root 2396 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/Meta/nsInfo.rds
-rw-r--r-- root/root 1019 2015-09-28 07:07 ./usr/lib/R/site-library/qtl/Meta/package.rds
-rw-r--r-- root/root 223 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/Meta/vignette.rds
-rw-r--r-- root/root 9749 2015-09-28 07:07 ./usr/lib/R/site-library/qtl/NAMESPACE
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/R/
-rw-r--r-- root/root 1056 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/R/qtl
-rw-r--r-- root/root 454913 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/R/qtl.rdb
-rw-r--r-- root/root 5579 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/R/qtl.rdx
-rw-r--r-- root/root 2483 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/README.md
-rw-r--r-- root/root 147377 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/STATUS.txt
-rw-r--r-- root/root 11849 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/TODO.txt
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/data/
-rw-r--r-- root/root 5334 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/data/badorder.RData
-rw-r--r-- root/root 2919 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/data/bristle3.RData
-rw-r--r-- root/root 2541 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/data/bristleX.RData
-rw-r--r-- root/root 16132 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/data/fake.4way.RData
-rw-r--r-- root/root 17612 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/data/fake.bc.RData
-rw-r--r-- root/root 9930 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/data/fake.f2.RData
-rw-r--r-- root/root 7540 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/data/hyper.RData
-rw-r--r-- root/root 6892 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/data/listeria.RData
-rw-r--r-- root/root 547 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/data/locations.RData
-rw-r--r-- root/root 1171 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/data/map10.RData
-rw-r--r-- root/root 9452 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/data/mapthis.RData
-rw-r--r-- root/root 10796 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/data/multitrait.RData
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/
-rw-r--r-- root/root 18447 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/MQM-tour.R
-rw-r--r-- root/root 737558 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/MQM-tour.pdf
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/MQM/
-rw-r--r-- root/root 52222 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/MQM/MQM-tour.Rnw
-rw-r--r-- root/root 83 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/MQM/SweaveIt.R
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/MQM/mqm/
-rw-r--r-- root/root 488 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/MQM/mqm/advantages_Rd.txt
-rw-r--r-- root/root 467 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/MQM/mqm/advantages_latex.txt
-rw-r--r-- root/root 1459 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/MQM/mqm/description.txt
-rw-r--r-- root/root 409 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/MQM/mqm/limitations.txt
-rw-r--r-- root/root 313 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/MQM/mqm/parallelisation_references.txt
-rw-r--r-- root/root 306 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/MQM/mqm/significance_references.txt
-rw-r--r-- root/root 504 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/MQM/mqm/standard_example.txt
-rw-r--r-- root/root 1013 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/MQM/mqm/standard_references.txt
-rw-r--r-- root/root 635 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/MQM/mqm/standard_seealso.txt
-rw-r--r-- root/root 82 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/MQM/sweaveit.bat
-rwxr-xr-x root/root 279 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/MQM/sweaveit.sh
-rw-r--r-- root/root 79714 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/geneticmaps.Rnw
-rw-r--r-- root/root 29630 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/new_multiqtl.Rnw
-rw-r--r-- root/root 7626 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/new_summary_scanone.Rnw
-rw-r--r-- root/root 14091 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/new_summary_scantwo.Rnw
-rw-r--r-- root/root 74263 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/rqtltour.tex
-rw-r--r-- root/root 26190 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/Sources/rqtltour2.tex
-rw-r--r-- root/root 2729 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/bcsft.R
-rw-r--r-- root/root 33527 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/bcsft.Rnw
-rw-r--r-- root/root 238470 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/bcsft.pdf
-rw-r--r-- root/root 33448 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/geneticmaps.R
-rw-r--r-- root/root 1622819 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/geneticmaps.pdf
-rw-r--r-- root/root 2977 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/index.html
-rw-r--r-- root/root 14005 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/new_multiqtl.R
-rw-r--r-- root/root 190798 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/new_multiqtl.pdf
-rw-r--r-- root/root 5494 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/new_summary_scanone.R
-rw-r--r-- root/root 34793 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/new_summary_scanone.pdf
-rw-r--r-- root/root 4143 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/new_summary_scantwo.R
-rw-r--r-- root/root 243498 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/new_summary_scantwo.pdf
-rw-r--r-- root/root 10755 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/rqtltour.R
-rw-r--r-- root/root 150828 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/rqtltour.pdf
-rw-r--r-- root/root 5241 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/rqtltour2.R
-rw-r--r-- root/root 73248 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/doc/rqtltour2.pdf
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/help/
-rw-r--r-- root/root 7673 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/help/AnIndex
-rw-r--r-- root/root 2200 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/help/aliases.rds
-rw-r--r-- root/root 1717 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/help/paths.rds
-rw-r--r-- root/root 767383 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/help/qtl.rdb
-rw-r--r-- root/root 4561 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/help/qtl.rdx
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/html/
-rw-r--r-- root/root 34563 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/html/00Index.html
-rw-r--r-- root/root 1319 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/html/R.css
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/libs/
-rw-r--r-- root/root 310072 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/libs/qtl.so
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/sampledata/
-rw-r--r-- root/root 3032 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/sampledata/README.txt
-rw-r--r-- root/root 31920 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/sampledata/gen.txt
-rw-r--r-- root/root 34949 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/sampledata/listeria.csv
-rw-r--r-- root/root 25603 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/sampledata/listeria.qtx
-rw-r--r-- root/root 34602 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/sampledata/listeria_gen.csv
-rw-r--r-- root/root 34602 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/sampledata/listeria_gen_rot.csv
-rw-r--r-- root/root 2064 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/sampledata/listeria_map.txt
-rw-r--r-- root/root 20750 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/sampledata/listeria_maps.txt
-rw-r--r-- root/root 1097 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/sampledata/listeria_phe.csv
-rw-r--r-- root/root 1097 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/sampledata/listeria_phe_rot.csv
-rw-r--r-- root/root 53101 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/sampledata/listeria_qc_cro.txt
-rw-r--r-- root/root 5597 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/sampledata/listeria_qc_map.txt
-rw-r--r-- root/root 19463 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/sampledata/listeria_raw.txt
-rw-r--r-- root/root 34949 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/sampledata/listeria_rot.csv
-rw-r--r-- root/root 1835 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/sampledata/map.txt
-rw-r--r-- root/root 718 2015-09-28 07:10 ./usr/lib/R/site-library/qtl/sampledata/phe.txt
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/share/
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-09-28 07:11 ./usr/share/doc/r-cran-qtl/
-rw-r--r-- root/root 262 2014-06-22 21:25 ./usr/share/doc/r-cran-qtl/README.test
-rw-r--r-- root/root 3337 2015-09-22 19:55 ./usr/share/doc/r-cran-qtl/changelog.Debian.gz
-rw-r--r-- root/root 1315 2015-07-02 13:39 ./usr/share/doc/r-cran-qtl/copyright
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/
drwxr-xr-x root/root 0 2015-09-28 07:11 ./usr/share/doc/r-cran-qtl/examples/bin/
-rw-r--r-- root/root 2106 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/CMakeLists.txt.gz
-rw-r--r-- root/root 1768 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/FindRLibs.cmake.gz
-rw-r--r-- root/root 671 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/README
-rw-r--r-- root/root 2409 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/mqmdebugout.cpp
-rw-r--r-- root/root 5059 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/mqmmain.cpp.gz
-rw-r--r-- root/root 2841 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/regressiontests.bat
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/rtest/
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/rtest/regression/
-rw-r--r-- root/root 8223 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/rtest/regression/mqm_listeria1.rtest.gz
-rw-r--r-- root/root 2140 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/rtest/regression/scanone_mr.rtest.gz
-rw-r--r-- root/root 2177 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/rtest/test_augmentation.R
-rw-r--r-- root/root 1179 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/rtest/test_mqm_hyper_prob.R
-rw-r--r-- root/root 1233 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/rtest/test_mqm_listeria1.R
-rw-r--r-- root/root 1157 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/rtest/test_scanone_mr.R
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/scripts/
-rwxr-xr-x root/root 426 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/scripts/cleanup.sh
-rw-r--r-- root/root 362 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/scripts/create-diff.sh
-rwxr-xr-x root/root 104 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/scripts/profiler.sh
-rwxr-xr-x root/root 115 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/scripts/r.sh
-rwxr-xr-x root/root 188 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/scripts/regression_tests.sh
-rw-r--r-- root/root 209 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/scripts/regression_tests_windows.bat
drwxr-xr-x root/root 0 2015-09-28 07:11 ./usr/share/doc/r-cran-qtl/examples/bin/test/
-rw-r--r-- root/root 233 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/chrid.dat
-rw-r--r-- root/root 418 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/chridhyper.txt
-rw-r--r-- root/root 233 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/cofactors.txt
-rw-r--r-- root/root 4932 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/filledgenohyper.txt.gz
-rw-r--r-- root/root 2018 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/geno.dat.gz
-rw-r--r-- root/root 4994 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/genohyper.txt.gz
-rw-r--r-- root/root 2138 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/markerpos.txt
-rw-r--r-- root/root 2366 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/markerposhyper.txt
-rw-r--r-- root/root 1028 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/pheno.dat.gz
-rw-r--r-- root/root 1339 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/phenohyper.txt
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/regression/
-rw-r--r-- root/root 44362 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/regression/debugout_dnorm.txt.gz
-rw-r--r-- root/root 258926 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/regression/debugout_pbeta.txt.gz
-rw-r--r-- root/root 2871 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/regression/t11out-test0.txt.gz
-rw-r--r-- root/root 5405 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/regression/t11out.txt.gz
-rw-r--r-- root/root 5627 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/regression/t12out.txt.gz
-rw-r--r-- root/root 5421 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/regression/t13out.txt.gz
-rw-r--r-- root/root 21421 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/regression/t21out.txt.gz
-rw-r--r-- root/root 21507 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/regression/t22out.txt.gz
-rw-r--r-- root/root 21423 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/regression/t23out.txt.gz
-rw-r--r-- root/root 21613 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/regression/t24out.txt.gz
-rw-r--r-- root/root 22259 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/regression/t25out.txt.gz
-rw-r--r-- root/root 20519 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/regression/t31out.txt.gz
-rw-r--r-- root/root 20759 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/regression/t32out.txt.gz
-rw-r--r-- root/root 20215 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/regression/t33out.txt.gz
-rw-r--r-- root/root 82 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/regression/t34out.txt
-rw-r--r-- root/root 45 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/settings.dat
-rw-r--r-- root/root 379 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/settingshyper.txt
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/std/
-rw-r--r-- root/root 2018 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/std/genotypes1.txt.gz
-rw-r--r-- root/root 4932 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/std/genotypes2.txt.gz
-rw-r--r-- root/root 4994 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/std/genotypes2m.txt.gz
-rw-r--r-- root/root 3190 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/std/genotypes3.txt.gz
-rw-r--r-- root/root 4114 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/std/genotypes3m.txt.gz
-rw-r--r-- root/root 2138 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/std/markers1.txt
-rw-r--r-- root/root 2747 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/std/markers2.txt
-rw-r--r-- root/root 3301 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/std/markers3.txt
-rw-r--r-- root/root 1028 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/std/phenotypes1.txt.gz
-rw-r--r-- root/root 1339 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/std/phenotypes2.txt
-rw-r--r-- root/root 712 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/std/phenotypes3.txt
-rw-r--r-- root/root 13 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/std/settings1.txt
-rw-r--r-- root/root 11 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/std/settings2.txt
-rw-r--r-- root/root 11 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/std/settings3.txt
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/t11/
-rw-r--r-- root/root 850 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/t11/cofactors.txt
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/t12/
-rw-r--r-- root/root 233 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/t12/cofactors.txt
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/t22/
-rw-r--r-- root/root 347 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/t22/cofactors.txt
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/t23/
-rw-r--r-- root/root 347 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/t23/cofactors.txt
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/t33/
-rw-r--r-- root/root 265 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/test/t33/cofactors.txt
-rw-r--r-- root/root 150 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/bin/wincompile.bat
drwxr-xr-x root/root 0 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/biolib/
-rw-r--r-- root/root 3196 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/biolib/CMakeLists.txt
-rw-r--r-- root/root 210 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/biolib/README
drwxr-xr-x root/root 0 2015-09-28 07:11 ./usr/share/doc/r-cran-qtl/examples/scripts/
-rwxr-xr-x root/root 427 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/scripts/check_rqtl.sh
-rwxr-xr-x root/root 1012 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/scripts/cleanup.sh
-rwxr-xr-x root/root 527 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/scripts/install_rqtl.sh
-rwxr-xr-x root/root 2843 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/scripts/repl_inputs.rb
-rwxr-xr-x root/root 1185 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/scripts/run_all_tests.sh
-rw-r--r-- root/root 1621 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/examples/scripts/update_header.rb.gz
-rw-r--r-- root/root 388 2014-06-23 12:04 ./usr/share/doc/r-cran-qtl/run-unit-test
drwxr-xr-x root/root 0 2015-09-28 07:11 ./usr/share/doc/r-cran-qtl/tests/
lrwxrwxrwx root/root 0 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/tests/gen.txt -> ../../../../lib/R/site-library/qtl/sampledata/gen.txt
lrwxrwxrwx root/root 0 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/tests/listeria.csv -> ../../../../lib/R/site-library/qtl/sampledata/listeria.csv
-rw-r--r-- root/root 2064 2011-05-09 15:31 ./usr/share/doc/r-cran-qtl/tests/listeria.map
-rw-r--r-- root/root 4958 2011-05-09 15:31 ./usr/share/doc/r-cran-qtl/tests/listeria.raw.gz
-rw-r--r-- root/root 5130 2011-05-09 15:31 ./usr/share/doc/r-cran-qtl/tests/listeria2.csv.gz
-rw-r--r-- root/root 1290 2011-05-09 15:31 ./usr/share/doc/r-cran-qtl/tests/listeria2.map
lrwxrwxrwx root/root 0 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/tests/map.txt -> ../../../../lib/R/site-library/qtl/sampledata/map.txt
lrwxrwxrwx root/root 0 2015-09-28 07:10 ./usr/share/doc/r-cran-qtl/tests/phe.txt -> ../../../../lib/R/site-library/qtl/sampledata/phe.txt
-rw-r--r-- root/root 1986 2013-04-22 21:32 ./usr/share/doc/r-cran-qtl/tests/test_io.R
-rw-r--r-- root/root 3734 2013-04-22 21:32 ./usr/share/doc/r-cran-qtl/tests/test_io.Rout.save
-rw-r--r-- root/root 359 2014-10-23 17:15 ./usr/share/doc/r-cran-qtl/tests/test_mapqtl_io.R
-rw-r--r-- root/root 1244 2014-10-30 10:55 ./usr/share/doc/r-cran-qtl/tests/test_mapqtl_io.Rout.save
-rw-r--r-- root/root 2762 2014-10-27 23:41 ./usr/share/doc/r-cran-qtl/tests/test_qtl.R
-rw-r--r-- root/root 1393 2015-04-16 18:37 ./usr/share/doc/r-cran-qtl/tests/test_scanonevar.R
-rw-r--r-- root/root 3061 2014-10-30 10:55 ./usr/share/doc/r-cran-qtl/tests/test_scanonevar.Rout.save
-rw-r--r-- root/root 331 2014-10-29 14:45 ./usr/share/doc/r-cran-qtl/tests/test_tidyIO.R
-rw-r--r-- root/root 1240 2014-10-29 14:45 ./usr/share/doc/r-cran-qtl/tests/test_tidyIO.Rout.save
-rw-r--r-- root/root 720 2013-04-22 21:32 ./usr/share/doc/r-cran-qtl/tests/testaugmentation.R
-rw-r--r-- root/root 36 2014-10-29 14:45 ./usr/share/doc/r-cran-qtl/tests/testthat.R
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 24664
Build-Time: 255
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 589
Job: r-cran-qtl_1.37-11-1
Machine Architecture: armhf
Package: r-cran-qtl
Package-Time: 904
Source-Version: 1.37-11-1
Space: 24664
Status: successful
Version: 1.37-11-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20150928-0711
Build needed 00:15:04, 24664k disc space