r-cran-openmx →
2.21.11+dfsg-2 →
armhf → 2024-01-22 12:32:31
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| r-cran-openmx 2.21.11+dfsg-2 (armhf) Mon, 22 Jan 2024 11:43:49 +0000 |
+==============================================================================+
Package: r-cran-openmx
Version: 2.21.11+dfsg-2
Source Version: 2.21.11+dfsg-2
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-6ea731a7-b0ae-4fe5-8037-7872a7c2fbd8' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.4 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
Fetched 29.4 MB in 10s (2984 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-openmx' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-openmx.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-openmx.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3924 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-cran-openmx 2.21.11+dfsg-2 (dsc) [2538 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-cran-openmx 2.21.11+dfsg-2 (tar) [3914 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-cran-openmx 2.21.11+dfsg-2 (diff) [7940 B]
Fetched 3924 kB in 0s (8755 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-openmx-PDE6wg/r-cran-openmx-2.21.11+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-openmx-PDE6wg' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-kYJShI/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-kYJShI/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-kYJShI/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-kYJShI/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-kYJShI/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-kYJShI/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-kYJShI/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-kYJShI/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (11.4 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 55 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-kYJShI/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (83.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12859 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-digest, r-cran-mass, r-cran-matrix, r-cran-rcpp, r-cran-rcppparallel, r-cran-lifecycle, r-cran-rcppeigen (>= 0.3.3.9.4), r-cran-stanheaders, r-cran-bh, r-cran-rpf, libboost-system-dev, libsqlite3-dev, libzstd-dev
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-digest, r-cran-mass, r-cran-matrix, r-cran-rcpp, r-cran-rcppparallel, r-cran-lifecycle, r-cran-rcppeigen (>= 0.3.3.9.4), r-cran-stanheaders, r-cran-bh, r-cran-rpf, libboost-system-dev, libsqlite3-dev, libzstd-dev
dpkg-deb: building package 'sbuild-build-depends-r-cran-openmx-dummy' in '/<<BUILDDIR>>/resolver-kYJShI/apt_archive/sbuild-build-depends-r-cran-openmx-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-cran-openmx-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-kYJShI/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-kYJShI/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-kYJShI/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-kYJShI/apt_archive ./ Sources [608 B]
Get:5 copy:/<<BUILDDIR>>/resolver-kYJShI/apt_archive ./ Packages [687 B]
Fetched 2628 B in 0s (14.7 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-cran-openmx build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap libperl5.36 netbase perl-modules-5.36 sgml-base
util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils bsdutils
ca-certificates cpp-13 dctrl-tools debhelper dh-autoreconf dh-r
dh-strip-nondeterminism dwz file fontconfig fontconfig-config
fonts-dejavu-core fonts-dejavu-mono g++-13 gcc-13 gcc-13-base gettext
gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libasan8 libatomic1
libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
libblkid1 libboost-dev libboost-system-dev libboost-system1.83-dev
libboost-system1.83.0 libboost1.83-dev libbrotli1 libbsd0 libbz2-dev
libcairo2 libcc1-0 libclass-c3-perl libclass-load-perl libclass-load-xs-perl
libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1
libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-13-dev
libgcc-s1 libgfortran-13-dev libgfortran5 libglib2.0-0 libgomp1
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl
libhwloc15 libice6 libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4
liblwp-mediatypes-perl liblzma-dev liblzma5 libmagic-mgc libmagic1
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmount1 libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses6 libncursesw6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libperl5.38 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16
libpsl5 libreadline-dev librtmp1 libsharpyuv0 libsm6 libsmartcols1
libsqlite3-dev libssh2-1 libstdc++-13-dev libstdc++6 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtbb-dev libtbb12
libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libthai-data libthai0 libtiff6
libtimedate-perl libtinfo6 libtk8.6 libtool libtry-tiny-perl libubsan1
libuchardet0 liburi-perl libuuid1 libvariable-magic-perl libwebp7
libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 libzstd-dev littler m4 man-db mount
ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.38 pkg-config
pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-cran-bh r-cran-cli
r-cran-digest r-cran-glue r-cran-lattice r-cran-lifecycle r-cran-littler
r-cran-mass r-cran-matrix r-cran-mvtnorm r-cran-pkgkitten r-cran-rcpp
r-cran-rcppeigen r-cran-rcppparallel r-cran-rlang r-cran-rpf
r-cran-stanheaders ucf unzip util-linux util-linux-extra x11-common xauth
xdg-utils xz-utils zip zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-13-locales cpp-13-doc
debtags dh-make postgresql-client-common gcc-13-doc gettext-doc
libasprintf-dev libgettextpo-dev gfortran-doc gfortran-13-doc
libcoarrays-dev groff liblapack-doc libboost-doc libboost1.83-doc
libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev
libboost-context1.83-dev libboost-contract1.83-dev
libboost-coroutine1.83-dev libboost-date-time1.83-dev
libboost-exception1.83-dev libboost-fiber1.83-dev
libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
libboost-numpy1.83-dev libboost-program-options1.83-dev
libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
libboost-serialization1.83-dev libboost-stacktrace1.83-dev
libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev
libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev
libboost1.83-tools-dev libmpfrc++-dev libntl-dev low-memory-monitor icu-doc
liblzma-doc cryptsetup-bin ncurses-doc libscalar-number-perl readline-doc
sqlite3-doc libstdc++-13-doc libtbb-doc tcl8.6 tk8.6 libtool-doc gcj-jdk
libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev
m4-doc apparmor less www-browser nfs-common perl-doc
libterm-readline-gnu-perl | libterm-readline-perl-perl
libtap-harness-archive-perl libmail-box-perl elpa-ess r-doc-info | r-doc-pdf
r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-cran-covr
r-cran-crayon r-cran-dbi r-cran-dplyr r-cran-forcats r-cran-ggplot2
r-cran-knitr r-cran-magrittr r-cran-r.utils r-cran-rmarkdown r-cran-rsqlite
r-cran-stringr r-cran-waldo r-cran-withr r-cran-getopt r-cran-inline
dosfstools kbd util-linux-locales
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libio-compress-brotli-perl
libhwloc-plugins libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix
libltdl-dev uuid-runtime libmail-sendmail-perl r-recommended r-doc-html
r-cran-callr r-cran-covr r-cran-crayon r-cran-htmltools r-cran-htmlwidgets
r-cran-knitr r-cran-mockery r-cran-processx r-cran-ps r-cran-rmarkdown
r-cran-rprojroot r-cran-rstudioapi r-cran-testthat r-cran-tibble
r-cran-whoami r-cran-withr r-cran-vctrs r-cran-lintr r-cran-tidyverse
r-cran-runit r-cran-fs r-cran-magrittr r-cran-pillar r-cran-usethis
r-cran-roxygen2 r-cran-ggplot2 r-cran-reshape2 r-cran-gridextra
r-cran-numderiv r-cran-markdown r-cran-rstan libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev
libboost-system-dev libboost-system1.83-dev libboost-system1.83.0
libboost1.83-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl
libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3-gnutls
libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl
libhwloc15 libice6 libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4
liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14
libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libperl5.38 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16
libpsl5 libreadline-dev librtmp1 libsharpyuv0 libsm6 libsqlite3-dev
libssh2-1 libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libtbb-dev libtbb12 libtbbbind-2-5
libtbbmalloc2 libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl
libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl
libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 libzstd-dev
littler m4 man-db openssl perl-modules-5.38 pkg-config pkgconf pkgconf-bin
po-debconf r-base-core r-base-dev r-cran-bh r-cran-cli r-cran-digest
r-cran-glue r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-mass
r-cran-matrix r-cran-mvtnorm r-cran-pkgkitten r-cran-rcpp r-cran-rcppeigen
r-cran-rcppparallel r-cran-rlang r-cran-rpf r-cran-stanheaders
sbuild-build-depends-r-cran-openmx-dummy ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
The following packages will be upgraded:
bsdutils cpp-13 g++-13 gcc-13 gcc-13-base libasan8 libatomic1 libblkid1
libcc1-0 libgcc-13-dev libgcc-s1 libgomp1 liblzma5 libmount1 libncursesw6
libsmartcols1 libstdc++-13-dev libstdc++6 libtinfo6 libubsan1 libuuid1 mount
ncurses-base ncurses-bin perl perl-base util-linux util-linux-extra xz-utils
zlib1g
30 upgraded, 199 newly installed, 0 to remove and 25 not upgraded.
Need to get 168 MB of archives.
After this operation, 527 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-kYJShI/apt_archive ./ sbuild-build-depends-r-cran-openmx-dummy 0.invalid.0 [976 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.3-6 [87.1 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf ncurses-bin armhf 6.4+20240113-1 [423 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf perl-modules-5.38 all 5.38.2-3 [2899 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libperl5.38 armhf 5.38.2-3 [3557 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf perl armhf 5.38.2-3 [236 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf perl-base armhf 5.38.2-3 [1440 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf zlib1g armhf 1:1.3.dfsg-3 [74.3 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.3-6 [102 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf util-linux-extra armhf 2.39.3-6 [135 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.3-6 [1113 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf ncurses-base all 6.4+20240113-1 [268 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.3-6 [134 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libcc1-0 armhf 13.2.0-9+rpi1 [35.4 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf libgomp1 armhf 13.2.0-9+rpi1 [104 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf gcc-13-base armhf 13.2.0-9+rpi1 [41.7 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libatomic1 armhf 13.2.0-9+rpi1 [8448 B]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libasan8 armhf 13.2.0-9+rpi1 [2391 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf libubsan1 armhf 13.2.0-9+rpi1 [964 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libstdc++6 armhf 13.2.0-9+rpi1 [578 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf g++-13 armhf 13.2.0-9+rpi1 [8138 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libstdc++-13-dev armhf 13.2.0-9+rpi1 [2209 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf libgcc-13-dev armhf 13.2.0-9+rpi1 [763 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf gcc-13 armhf 13.2.0-9+rpi1 [14.7 MB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf cpp-13 armhf 13.2.0-9+rpi1 [7372 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libgcc-s1 armhf 13.2.0-9+rpi1 [36.2 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.3-6 [145 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf liblzma5 armhf 5.4.5-0.3 [227 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libmount1 armhf 2.39.3-6 [168 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libtinfo6 armhf 6.4+20240113-1 [326 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf libncursesw6 armhf 6.4+20240113-1 [107 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libuuid1 armhf 2.39.3-6 [28.3 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.3-6 [81.4 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-3 [1358 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.1.4-2 [1375 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf xz-utils armhf 5.4.5-0.3 [499 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.9 [82.3 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.10-1 [10.6 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.9 [956 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf zip armhf 3.0-13 [207 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf unzip armhf 6.0-28 [147 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libpaper1 armhf 1.1.29 [11.9 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libpaper-utils armhf 1.1.29 [8416 B]
Get:71 http://172.17.4.1/private trixie-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-3 [259 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.8-1 [120 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.58.0-1 [61.7 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-4 [195 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 8.5.0-2+rpi1 [377 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.3-1 [1256 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-9+rpi1 [247 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-2 [62.8 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-2 [168 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-3 [34.3 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-2 [46.1 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-4 [189 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-4 [40.8 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-4 [31.1 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-4 [132 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-3 [299 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.2-1 [26.4 MB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf libgfortran-13-dev armhf 13.2.0-9+rpi1 [293 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf gfortran-13 armhf 13.2.0-9+rpi1 [7837 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:13.2.0-1+rpi1 [1424 B]
Get:130 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20240113-1 [80.9 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20240113-1 [289 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-3 [124 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg-3 [903 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.40-3 [337 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.5-0.3 [278 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-4 [174 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-4 [9956 kB]
Get:147 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:148 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:151 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:152 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.2-1 [4504 B]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1+b1 [13.2 kB]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.06-1 [10.7 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.45-1 [82.0 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b2 [23.5 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b2 [10.4 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2+b1 [15.0 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b2 [21.4 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:175 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:176 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b2 [13.8 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:178 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:179 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:180 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:183 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:185 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:188 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b2 [18.4 kB]
Get:190 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2206-1+b1 [765 kB]
Get:191 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b2 [41.5 kB]
Get:192 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:193 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3+b1 [10.9 kB]
Get:194 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1+b1 [12.1 kB]
Get:195 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:196 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.5.0-2+rpi1 [372 kB]
Get:197 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10+b1 [55.8 kB]
Get:198 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:199 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20231212 [42.2 kB]
Get:200 http://172.17.4.1/private trixie-staging/main armhf libboost1.83-dev armhf 1.83.0-2 [10.6 MB]
Get:201 http://172.17.4.1/private trixie-staging/main armhf libboost-dev armhf 1.83.0.2 [3552 B]
Get:202 http://172.17.4.1/private trixie-staging/main armhf libboost-system1.83.0 armhf 1.83.0-2 [230 kB]
Get:203 http://172.17.4.1/private trixie-staging/main armhf libboost-system1.83-dev armhf 1.83.0-2 [231 kB]
Get:204 http://172.17.4.1/private trixie-staging/main armhf libboost-system-dev armhf 1.83.0.2 [3448 B]
Get:205 http://172.17.4.1/private trixie-staging/main armhf libhwloc15 armhf 2.10.0-1 [131 kB]
Get:206 http://172.17.4.1/private trixie-staging/main armhf libsqlite3-dev armhf 3.44.2-1 [939 kB]
Get:207 http://172.17.4.1/private trixie-staging/main armhf libtbbmalloc2 armhf 2021.11.0-2+rpi1 [42.8 kB]
Get:208 http://172.17.4.1/private trixie-staging/main armhf libtbbbind-2-5 armhf 2021.11.0-2+rpi1 [13.0 kB]
Get:209 http://172.17.4.1/private trixie-staging/main armhf libtbb12 armhf 2021.11.0-2+rpi1 [72.4 kB]
Get:210 http://172.17.4.1/private trixie-staging/main armhf libtbb-dev armhf 2021.11.0-2+rpi1 [193 kB]
Get:211 http://172.17.4.1/private trixie-staging/main armhf libzstd-dev armhf 1.5.5+dfsg2-2 [301 kB]
Get:212 http://172.17.4.1/private trixie-staging/main armhf r-cran-littler armhf 0.3.19-1 [88.0 kB]
Get:213 http://172.17.4.1/private trixie-staging/main armhf littler all 0.3.19-1 [15.4 kB]
Get:214 http://172.17.4.1/private trixie-staging/main armhf r-cran-bh all 1.84.0-1 [5912 B]
Get:215 http://172.17.4.1/private trixie-staging/main armhf r-cran-cli armhf 3.6.2-1 [1327 kB]
Get:216 http://172.17.4.1/private trixie-staging/main armhf r-cran-digest armhf 0.6.34-1 [186 kB]
Get:217 http://172.17.4.1/private trixie-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:218 http://172.17.4.1/private trixie-staging/main armhf r-cran-lattice armhf 0.22-5-1 [1393 kB]
Get:219 http://172.17.4.1/private trixie-staging/main armhf r-cran-rlang armhf 1.1.2-1 [1654 kB]
Get:220 http://172.17.4.1/private trixie-staging/main armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
Get:221 http://172.17.4.1/private trixie-staging/main armhf r-cran-mass armhf 7.3-60-2 [1114 kB]
Get:222 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrix armhf 1.6-5-1 [3703 kB]
Get:223 http://172.17.4.1/private trixie-staging/main armhf r-cran-mvtnorm armhf 1.2-4-1 [720 kB]
Get:224 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgkitten all 0.2.3-1 [26.7 kB]
Get:225 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcpp armhf 1.0.12-1 [2043 kB]
Get:226 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcppeigen armhf 0.3.3.9.4-1 [1150 kB]
Get:227 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcppparallel armhf 5.1.7+dfsg-1 [302 kB]
Get:228 http://172.17.4.1/private trixie-staging/main armhf r-cran-rpf armhf 1.0.14+dfsg-1 [632 kB]
Get:229 http://172.17.4.1/private trixie-staging/main armhf r-cran-stanheaders armhf 2.26.28-3 [1301 kB]
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Selecting previously unselected package r-cran-digest.
Preparing to unpack .../183-r-cran-digest_0.6.34-1_armhf.deb ...
Unpacking r-cran-digest (0.6.34-1) ...
Selecting previously unselected package r-cran-glue.
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Unpacking r-cran-glue (1.6.2-1) ...
Selecting previously unselected package r-cran-lattice.
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Unpacking r-cran-lattice (0.22-5-1) ...
Selecting previously unselected package r-cran-rlang.
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Unpacking r-cran-rlang (1.1.2-1) ...
Selecting previously unselected package r-cran-lifecycle.
Preparing to unpack .../187-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
Selecting previously unselected package r-cran-mass.
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Unpacking r-cran-mass (7.3-60-2) ...
Selecting previously unselected package r-cran-matrix.
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Unpacking r-cran-matrix (1.6-5-1) ...
Selecting previously unselected package r-cran-mvtnorm.
Preparing to unpack .../190-r-cran-mvtnorm_1.2-4-1_armhf.deb ...
Unpacking r-cran-mvtnorm (1.2-4-1) ...
Selecting previously unselected package r-cran-pkgkitten.
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Unpacking r-cran-pkgkitten (0.2.3-1) ...
Selecting previously unselected package r-cran-rcpp.
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Unpacking r-cran-rcpp (1.0.12-1) ...
Selecting previously unselected package r-cran-rcppeigen.
Preparing to unpack .../193-r-cran-rcppeigen_0.3.3.9.4-1_armhf.deb ...
Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ...
Selecting previously unselected package r-cran-rcppparallel.
Preparing to unpack .../194-r-cran-rcppparallel_5.1.7+dfsg-1_armhf.deb ...
Unpacking r-cran-rcppparallel (5.1.7+dfsg-1) ...
Selecting previously unselected package r-cran-rpf.
Preparing to unpack .../195-r-cran-rpf_1.0.14+dfsg-1_armhf.deb ...
Unpacking r-cran-rpf (1.0.14+dfsg-1) ...
Selecting previously unselected package r-cran-stanheaders.
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Unpacking r-cran-stanheaders (2.26.28-3) ...
Selecting previously unselected package sbuild-build-depends-r-cran-openmx-dummy.
Preparing to unpack .../197-sbuild-build-depends-r-cran-openmx-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-r-cran-openmx-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.5.0-2) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libgraphite2-3:armhf (1.3.14-2) ...
Setting up libtbbmalloc2:armhf (2021.11.0-2+rpi1) ...
Setting up libpixman-1-0:armhf (0.42.2-1) ...
Setting up libsharpyuv0:armhf (1.3.2-0.3) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.2-1+b1) ...
Setting up libicu72:armhf (72.1-4) ...
Setting up liblerc4:armhf (4.0.0+ds-4) ...
Setting up libzstd-dev:armhf (1.5.5+dfsg2-2) ...
Setting up bsdextrautils (2.39.3-6) ...
Setting up cpp-13 (13.2.0-9+rpi1) ...
Setting up libdatrie1:armhf (0.2.13-3) ...
Setting up libmagic-mgc (1:5.45-2) ...
Setting up libglib2.0-0:armhf (2.78.3-1) ...
No schema files found: doing nothing.
Setting up unzip (6.0-28) ...
Setting up libbrotli1:armhf (1.1.0-2) ...
Setting up libboost-system1.83.0:armhf (1.83.0-2) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libnghttp2-14:armhf (1.58.0-1) ...
Setting up libmagic1:armhf (1:5.45-2) ...
Setting up libdeflate0:armhf (1.18-1) ...
Setting up gettext-base (0.21-14) ...
Setting up m4 (1.4.19-4) ...
Setting up file (1:5.45-2) ...
Setting up libgomp1:armhf (13.2.0-9+rpi1) ...
Setting up libjbig0:armhf (2.1-6.1) ...
Setting up libpcre2-16-0:armhf (10.42-4) ...
Setting up zip (3.0-13) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpcre2-32-0:armhf (10.42-4) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpkgconf3:armhf (1.8.1-1) ...
Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ...
Setting up libsqlite3-dev:armhf (3.44.2-1) ...
Setting up libx11-data (2:1.8.7-1) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.4+20240113-1) ...
Setting up xz-utils (5.4.5-0.3) ...
Setting up libfribidi0:armhf (1.0.13-3) ...
Setting up perl-modules-5.38 (5.38.2-3) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16:armhf (1.6.40-3) ...
Setting up libhwloc15:armhf (2.10.0-1) ...
Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ...
Setting up autopoint (0.21-14) ...
Setting up icu-devtools (72.1-4) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up ucf (3.0043+nmu1) ...
Setting up pkgconf-bin (1.8.1-1) ...
Setting up libgfortran5:armhf (13.2.0-9+rpi1) ...
Setting up libwebp7:armhf (1.3.2-0.3) ...
Setting up liblzma-dev:armhf (5.4.5-0.3) ...
Setting up libubsan1:armhf (13.2.0-9+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.3.dfsg-3) ...
Setting up libpcre2-posix3:armhf (10.42-4) ...
Setting up mount (2.39.3-6) ...
Setting up libtiff6:armhf (4.5.1+git230720-3) ...
Setting up libasan8:armhf (13.2.0-9+rpi1) ...
Setting up libuchardet0:armhf (0.0.8-1) ...
Setting up libthai-data (0.1.29-2) ...
Setting up libssh2-1:armhf (1.11.0-4) ...
Setting up openssl (3.1.4-2) ...
Setting up libbsd0:armhf (0.11.8-1) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libicu-dev:armhf (72.1-4) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libcc1-0:armhf (13.2.0-9+rpi1) ...
Setting up libblas-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up util-linux-extra (2.39.3-6) ...
Setting up libbz2-dev:armhf (1.0.8-5+b2) ...
Setting up libpaper1:armhf (1.1.29) ...
Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.4+20240113-1) ...
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-14) ...
Setting up libpcre2-dev:armhf (10.42-4) ...
Setting up libtool (2.4.7-7) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up fontconfig-config (2.14.2-6) ...
Setting up libpng-dev:armhf (1.6.40-3) ...
Setting up libjpeg-dev:armhf (1:2.1.5-2) ...
Setting up libperl5.38:armhf (5.38.2-3) ...
Setting up libcurl3-gnutls:armhf (8.5.0-2+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libpaper-utils (1.1.29) ...
Setting up libreadline-dev:armhf (8.2-3) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up libtbbbind-2-5:armhf (2021.11.0-2+rpi1) ...
Setting up libthai0:armhf (0.1.29-2) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up perl (5.38.2-3) ...
Setting up libpackage-stash-xs-perl:armhf (0.30-1+b2) ...
Setting up libalgorithm-c3-perl (0.11-2) ...
Setting up libswitch-perl (2.17-3) ...
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libvariable-magic-perl (0.63-1+b2) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libb-hooks-op-check-perl:armhf (0.22-2+b2) ...
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up libparams-util-perl (1.102-2+b2) ...
Setting up autoconf (2.71-3) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libsub-name-perl:armhf (0.27-1+b1) ...
Setting up dwz (0.15-1) ...
Setting up libgcc-13-dev:armhf (13.2.0-9+rpi1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libcurl4:armhf (8.5.0-2+rpi1) ...
Setting up libsub-override-perl (0.10-1) ...
Setting up libx11-6:armhf (2:1.8.7-1) ...
Setting up libharfbuzz0b:armhf (8.0.1-1) ...
Setting up libdevel-globaldestruction-perl (0.14-4) ...
Setting up libdevel-stacktrace-perl (2.0400-2) ...
Setting up libgfortran-13-dev:armhf (13.2.0-9+rpi1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up liburi-perl (5.21-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libstdc++-13-dev:armhf (13.2.0-9+rpi1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhttp-date-perl (6.06-1) ...
Setting up libfile-which-perl (1.27-2) ...
Setting up libboost1.83-dev:armhf (1.83.0-2) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up libdynaloader-functions-perl (0.003-3) ...
Setting up libclone-perl:armhf (0.46-1+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-3+b1) ...
Setting up libdebhelper-perl (13.11.9) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up libtry-tiny-perl (0.31-2) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-10+b1) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up libtbb12:armhf (2021.11.0-2+rpi1) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2+b1) ...
Setting up man-db (2.12.0-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libsub-install-perl (0.929-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up gcc-13 (13.2.0-9+rpi1) ...
Setting up libdata-optlist-perl (0.114-1) ...
Setting up libxt6:armhf (1:1.2.1-1.1) ...
Setting up xauth (1:1.1.2-1) ...
Setting up libboost-dev:armhf (1.83.0.2) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libtbb-dev:armhf (2021.11.0-2+rpi1) ...
Setting up libboost-system1.83-dev:armhf (1.83.0-2) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (6.45-1) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up g++-13 (13.2.0-9+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b2) ...
Setting up libboost-system-dev:armhf (1.83.0.2) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up gfortran-13 (13.2.0-9+rpi1) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up debhelper (13.11.9) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up gfortran (4:13.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libclass-load-perl (0.25-2) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b2) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up libmoose-perl:armhf (2.2206-1+b1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up fontconfig (2.14.2-6) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Setting up libpango-1.0-0:armhf (1.51.0+ds-4) ...
Setting up libcairo2:armhf (1.18.0-1) ...
Setting up libpangoft2-1.0-0:armhf (1.51.0+ds-4) ...
Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-4) ...
Setting up r-base-core (4.3.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-lattice (0.22-5-1) ...
Setting up r-cran-pkgkitten (0.2.3-1) ...
Setting up r-cran-rcppparallel (5.1.7+dfsg-1) ...
Setting up r-cran-littler (0.3.19-1) ...
Setting up r-cran-bh (1.84.0-1) ...
Setting up r-cran-rcpp (1.0.12-1) ...
Setting up r-cran-rlang (1.1.2-1) ...
Setting up r-base-dev (4.3.2-1) ...
Setting up littler (0.3.19-1) ...
Setting up r-cran-digest (0.6.34-1) ...
Setting up r-cran-mass (7.3-60-2) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-cli (3.6.2-1) ...
Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
Setting up r-cran-mvtnorm (1.2-4-1) ...
Setting up r-cran-matrix (1.6-5-1) ...
Setting up dh-r (20231212) ...
Setting up r-cran-rcppeigen (0.3.3.9.4-1) ...
Setting up r-cran-stanheaders (2.26.28-3) ...
Setting up r-cran-rpf (1.0.14+dfsg-1) ...
Setting up sbuild-build-depends-r-cran-openmx-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.37-12+rpi2) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-9+rpi1 gcc-12_12.3.0-13+rpi1 gcc-13_13.2.0-9+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_13.2.0-9+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 ca-certificates_20230311 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-13+rpi1 cpp-13_13.2.0-9+rpi1 dash_0.5.12-6 dctrl-tools_2.24-3 debconf_1.5.82 debhelper_13.11.9 debianutils_5.14 dh-autoreconf_20 dh-r_20231212 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-6 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-9+rpi1 gcc_4:13.2.0-1+rpi1 gcc-12_12.3.0-13+rpi1 gcc-12-base_12.3.0-13+rpi1 gcc-13_13.2.0-9+rpi1 gcc-13-base_13.2.0-9+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gfortran_4:13.2.0-1+rpi1 gfortran-13_13.2.0-9+rpi1 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 icu-devtools_72.1-4 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-5 libacl1_2.3.1-3 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-9+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-9+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b2 libbinutils_2.41-6+rpi1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.3-6 libboost-dev_1.83.0.2 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libpackage-stash-xs-perl_0.30-1+b2 libpam-cap_1:2.66-4 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpango-1.0-0_1.51.0+ds-4 libpangocairo-1.0-0_1.51.0+ds-4 libpangoft2-1.0-0_1.51.0+ds-4 libpaper-utils_1.1.29 libpaper1_1.1.29 libparams-classify-perl_0.015-2+b2 libparams-util-perl_1.102-2+b2 libpcre2-16-0_10.42-4 libpcre2-32-0_10.42-4 libpcre2-8-0_10.42-4 libpcre2-dev_10.42-4 libpcre2-posix3_10.42-4 libpcre3_2:8.39-15 libperl5.36_5.36.0-10 libperl5.38_5.38.2-3 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpkgconf3_1.8.1-1 libpng-dev_1.6.40-3 libpng16-16_1.6.40-3 libpsl5_0.21.2-1+b1 libreadline-dev_8.2-3 libreadline8_8.2-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.4-2+rpi1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol1_3.1-1 libsepol2_3.5-2 libsframe1_2.41-6+rpi1 libsharpyuv0_1.3.2-0.3 libsm6_2:1.2.3-1 libsmartcols1_2.39.3-6 libsqlite3-0_3.44.2-1 libsqlite3-dev_3.44.2-1 libss2_1.47.0-2 libssh2-1_1.11.0-4 libssl1.1_1.1.1o-1 libssl3_3.1.4-2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_13.2.0-9+rpi1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3+b1 libsub-install-perl_0.929-1 libsub-name-perl_0.27-1+b1 libsub-override-perl_0.10-1 libswitch-perl_2.17-3 libsystemd0_254.5-1+rpi1 libtasn1-6_4.19.0-3 libtbb-dev_2021.11.0-2+rpi1 libtbb12_2021.11.0-2+rpi1 libtbbbind-2-5_2021.11.0-2+rpi1 libtbbmalloc2_2021.11.0-2+rpi1 libtcl8.6_8.6.13+dfsg-2 libtext-glob-perl_0.11-3 libthai-data_0.1.29-2 libthai0_0.1.29-2 libtiff6_4.5.1+git230720-3 libtimedate-perl_2.3300-2 libtinfo6_6.4+20240113-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtk8.6_8.6.13-2 libtool_2.4.7-7 libtry-tiny-perl_0.31-2 libubsan1_13.2.0-9+rpi1 libuchardet0_0.0.8-1 libudev1_254.5-1+rpi1 libunistring2_1.0-2 libunistring5_1.1-2 liburi-perl_5.21-1 libuuid1_2.39.3-6 libvariable-magic-perl_0.63-1+b2 libwebp7_1.3.2-0.3 libwww-curl-perl_4.17-10+b1 libwww-curl-simple-perl_0.100191-3 libx11-6_2:1.8.7-1 libx11-data_2:1.8.7-1 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.3 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1.1 libxxhash0_0.8.2-2 libzstd-dev_1.5.5+dfsg2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1 littler_0.3.19-1 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-3 mawk_1.3.4.20231126-1 mount_2.39.3-6 nano_7.2-1 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 netbase_6.4 openssl_3.1.4-2 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.38.2-3 perl-base_5.38.2-3 perl-modules-5.36_5.36.0-10 perl-modules-5.38_5.38.2-3 pinentry-curses_1.2.1-3 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 r-base-core_4.3.2-1 r-base-dev_4.3.2-1 r-cran-bh_1.84.0-1 r-cran-cli_3.6.2-1 r-cran-digest_0.6.34-1 r-cran-glue_1.6.2-1 r-cran-lattice_0.22-5-1 r-cran-lifecycle_1.0.4+dfsg-1 r-cran-littler_0.3.19-1 r-cran-mass_7.3-60-2 r-cran-matrix_1.6-5-1 r-cran-mvtnorm_1.2-4-1 r-cran-pkgkitten_0.2.3-1 r-cran-rcpp_1.0.12-1 r-cran-rcppeigen_0.3.3.9.4-1 r-cran-rcppparallel_5.1.7+dfsg-1 r-cran-rlang_1.1.2-1 r-cran-rpf_1.0.14+dfsg-1 r-cran-stanheaders_2.26.28-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-openmx-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 sysvinit-utils_3.08-5 tar_1.34+dfsg-1.3 tzdata_2023c-11 ucf_3.0043+nmu1 unzip_6.0-28 usrmerge_38 util-linux_2.39.3-6 util-linux-extra_2.39.3-6 x11-common_1:7.7+23 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1 xz-utils_5.4.5-0.3 zip_3.0-13 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Mon Jan 15 07:27:31 2024 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-cran-openmx_2.21.11+dfsg-2.dsc: no acceptable signature found
dpkg-source: info: extracting r-cran-openmx in /<<BUILDDIR>>/r-cran-openmx-2.21.11+dfsg
dpkg-source: info: unpacking r-cran-openmx_2.21.11+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-cran-openmx_2.21.11+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying use_debian_packaged_libs.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-6ea731a7-b0ae-4fe5-8037-7872a7c2fbd8
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-cran-openmx
dpkg-buildpackage: info: source version 2.21.11+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-cran-openmx/ -a -O--buildsystem=R
I: R packages needed for DEP8: mvtnorm, numderiv, roxygen2 (>= 6.1), snowfall, lme4, covr, testthat, knitr, markdown, rmarkdown, reshape2, ggplot2
I: R Package: OpenMx Version: 2.21.11
I: Building using R version 4.3.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Mon, 15 Jan 2024 08:06:08 +0100
mkdir -p /<<BUILDDIR>>/r-cran-openmx-2.21.11\+dfsg/debian/r-cran-openmx/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-cran-openmx-2.21.11\+dfsg/debian/r-cran-openmx/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 15 Jan 2024 08:06:08 +0100'"
* installing *source* package 'OpenMx' ...
files 'inst/doc/factor_analysis.html', 'inst/doc/regularization.html' are missing
files 'inst/tools/mxAlgebraParser.py', 'inst/tools/mxParser.py', 'inst/tools/sphinxToR.py', 'src/Makevars.in' have the wrong MD5 checksums
** using staged installation
NOTE: ./configure is not an autoconf generated script.
Change default C/C++ compiler and default compile flags by editing ~/.R/Makevars
** libs
using C compiler: 'gcc (Raspbian 13.2.0-9+rpi1) 13.2.0'
using Fortran compiler: 'GNU Fortran (Raspbian 13.2.0-9+rpi1) 13.2.0'
using C++ compiler: 'g++ (Raspbian 13.2.0-9+rpi1) 13.2.0'
using C++17
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-openmx-2.21.11+dfsg/src'
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Compute.cpp -o Compute.o
In file included from /usr/include/c++/13/bits/stl_algo.h:61,
from /usr/include/c++/13/algorithm:61,
from Compute.cpp:17:
/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1812 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1918 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1947 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1948 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1949 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1864 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1947 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1948 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1949 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1864 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ComputeGD.cpp -o ComputeGD.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ComputeNM.cpp -o ComputeNM.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ComputeNR.cpp -o ComputeNR.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ComputeSD.cpp -o ComputeSD.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c FellnerFitFunction.cpp -o FellnerFitFunction.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c MarkovExpectation.cpp -o MarkovExpectation.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c MarkovFF.cpp -o MarkovFF.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c asa.c -o asa.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c asubnp.cpp -o asubnp.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ba81quad.cpp -o ba81quad.o
In file included from /usr/include/c++/13/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from ba81quad.h:21,
from ba81quad.cpp:18:
/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:66:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >]' at ba81quad.h:1112:21:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >]' at ba81quad.h:1148:25:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >]' at ba81quad.h:1158:21:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c dmvnorm.cpp -o dmvnorm.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c fitMultigroup.cpp -o fitMultigroup.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c general.c -o general.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c glue.cpp -o glue.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c matlogexp.cpp -o matlogexp.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c matrix.cpp -o matrix.o
gfortran -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -c mvbvn.f -o mvbvn.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c nanotimer.cpp -o nanotimer.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxAlgebra.cpp -o omxAlgebra.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxAlgebraFitFunction.cpp -o omxAlgebraFitFunction.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxData.cpp -o omxData.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxExpectation.cpp -o omxExpectation.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxExpectationBA81.cpp -o omxExpectationBA81.o
In file included from /usr/include/c++/13/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from omxExpectation.h:32,
from omxExpectationBA81.h:20,
from omxExpectationBA81.cpp:20:
/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:66:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<double, -1, 1>]' at ba81quad.h:1112:21:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<double, -1, 1>]' at ba81quad.h:1148:25:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<double, -1, 1>]' at ba81quad.h:1158:21:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxExportBackendState.cpp -o omxExportBackendState.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxFIMLFitFunction.cpp -o omxFIMLFitFunction.o
In file included from /usr/include/c++/13/bits/stl_algo.h:61,
from /usr/include/c++/13/functional:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:62,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from omxFIMLFitFunction.cpp:18:
/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1918 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1812 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'nanotime_t omxFIMLFitFunction::getMedianElapsedTime()' at omxFIMLFitFunction.cpp:27:11:
/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1947 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1948 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1949 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'nanotime_t omxFIMLFitFunction::getMedianElapsedTime()' at omxFIMLFitFunction.cpp:27:11:
/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1864 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60:
/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]' at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from 'virtual void omxFIMLFitFunction::compute2(int, FitContext*)' at omxFIMLFitFunction.cpp:945:25:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxFitFunction.cpp -o omxFitFunction.o
In file included from /usr/include/c++/13/bits/stl_algo.h:61,
from /usr/include/c++/13/functional:67,
from omxFitFunction.h:32,
from omxFitFunction.cpp:31:
/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1812 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1918 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1947 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1948 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1949 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1864 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1947 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1948 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1949 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1864 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxFitFunctionBA81.cpp -o omxFitFunctionBA81.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxGREMLExpectation.cpp -o omxGREMLExpectation.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxGREMLfitfunction.cpp -o omxGREMLfitfunction.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxHessianCalculation.cpp -o omxHessianCalculation.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxImportFrontendState.cpp -o omxImportFrontendState.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxLISRELExpectation.cpp -o omxLISRELExpectation.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxMLFitFunction.cpp -o omxMLFitFunction.o
In file included from /usr/include/boost/math/special_functions/detail/bessel_jy.hpp:14,
from /usr/include/boost/math/special_functions/bessel.hpp:20,
from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/bessel_first_kind.hpp:6,
from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:28,
from /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/fun.hpp:7,
from /usr/lib/R/site-library/StanHeaders/include/stan/math/mix.hpp:14,
from omxMLFitFunction.cpp:21:
/usr/include/boost/math/special_functions/gamma.hpp: In instantiation of 'boost::math::detail::upper_incomplete_gamma_fract<T>::result_type boost::math::detail::upper_incomplete_gamma_fract<T>::operator()() [with T = double; result_type = std::pair<double, double>]':
/usr/include/boost/math/tools/fraction.hpp:217:20: required from 'typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract<double>; U = double; typename detail::fraction_traits<Gen>::result_type = double; uintmax_t = long long unsigned int]'
/usr/include/boost/math/tools/fraction.hpp:252:31: required from 'typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_a(Gen&, const U&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract<double>; U = double; typename detail::fraction_traits<Gen>::result_type = double]'
/usr/include/boost/math/special_functions/gamma.hpp:314:68: required from 'T boost::math::detail::upper_gamma_fraction(T, T, T) [with T = double]'
/usr/include/boost/math/special_functions/gamma.hpp:1176:44: required from 'T boost::math::detail::gamma_incomplete_imp(T, T, bool, bool, const Policy&, T*) [with T = double; Policy = boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]'
/usr/include/boost/math/special_functions/gamma.hpp:2130:35: required from 'boost::math::tools::promote_args_t<RT1, RT2> boost::math::gamma_p(RT1, RT2, const Policy&) [with RT1 = double; RT2 = double; Policy = policies::policy<policies::overflow_error<boost::math::policies::errno_on_error>, policies::pole_error<boost::math::policies::errno_on_error>, policies::promote_double<false>, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t<RT1, RT2> = double]'
/usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/gamma_p.hpp:76:30: required from here
/usr/include/boost/math/special_functions/gamma.hpp:299:16: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
299 | result_type operator()()
| ^~~~~~~~
/usr/include/boost/math/special_functions/gamma.hpp: In instantiation of 'boost::math::detail::upper_incomplete_gamma_fract<T>::result_type boost::math::detail::upper_incomplete_gamma_fract<T>::operator()() [with T = long double; result_type = std::pair<long double, long double>]':
/usr/include/boost/math/tools/fraction.hpp:217:20: required from 'typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract<long double>; U = long double; typename detail::fraction_traits<Gen>::result_type = long double; uintmax_t = long long unsigned int]'
/usr/include/boost/math/tools/fraction.hpp:252:31: required from 'typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_a(Gen&, const U&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract<long double>; U = long double; typename detail::fraction_traits<Gen>::result_type = long double]'
/usr/include/boost/math/special_functions/gamma.hpp:314:68: required from 'T boost::math::detail::upper_gamma_fraction(T, T, T) [with T = long double]'
/usr/include/boost/math/special_functions/gamma.hpp:1176:44: required from 'T boost::math::detail::gamma_incomplete_imp(T, T, bool, bool, const Policy&, T*) [with T = long double; Policy = boost::math::policies::policy<boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]'
/usr/include/boost/math/special_functions/gamma.hpp:2099:35: required from 'boost::math::tools::promote_args_t<RT1, RT2> boost::math::gamma_q(RT1, RT2, const Policy&) [with RT1 = double; RT2 = double; Policy = policies::policy<policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t<RT1, RT2> = double]'
/usr/include/boost/math/special_functions/gamma.hpp:2107:18: required from 'boost::math::tools::promote_args_t<RT1, RT2> boost::math::gamma_q(RT1, RT2) [with RT1 = double; RT2 = double; tools::promote_args_t<RT1, RT2> = double]'
/usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/gamma_q.hpp:55:72: required from here
/usr/include/boost/math/special_functions/gamma.hpp:299:16: note: parameter passing for argument of type 'std::pair<long double, long double>' when C++17 is enabled changed to match C++14 in GCC 10.1
In file included from /usr/include/boost/math/special_functions/binomial.hpp:15,
from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/choose.hpp:7,
from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:43:
/usr/include/boost/math/special_functions/beta.hpp: In instantiation of 'boost::math::detail::ibeta_fraction2_t<T>::result_type boost::math::detail::ibeta_fraction2_t<T>::operator()() [with T = double; result_type = std::pair<double, double>]':
/usr/include/boost/math/tools/fraction.hpp:123:20: required from 'typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_b(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::ibeta_fraction2_t<double>; U = double; typename detail::fraction_traits<Gen>::result_type = double; uintmax_t = long long unsigned int]'
/usr/include/boost/math/tools/fraction.hpp:156:31: required from 'typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_b(Gen&, const U&) [with Gen = boost::math::detail::ibeta_fraction2_t<double>; U = double; typename detail::fraction_traits<Gen>::result_type = double]'
/usr/include/boost/math/special_functions/beta.hpp:732:54: required from 'T boost::math::detail::ibeta_fraction2(T, T, T, T, const Policy&, bool, T*) [with T = double; Policy = boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]'
/usr/include/boost/math/special_functions/beta.hpp:1377:36: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool, T*) [with T = double; Policy = boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]'
/usr/include/boost/math/special_functions/beta.hpp:1414:20: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool) [with T = double; Policy = boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]'
/usr/include/boost/math/special_functions/beta.hpp:1570:93: required from 'boost::math::tools::promote_args_t<RT1, RT2, A> boost::math::ibeta(RT1, RT2, RT3, const Policy&) [with RT1 = double; RT2 = double; RT3 = double; Policy = policies::policy<policies::overflow_error<boost::math::policies::errno_on_error>, policies::pole_error<boost::math::policies::errno_on_error>, policies::promote_double<false>, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; tools::promote_args_t<RT1, RT2, A> = double]'
/usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/inc_beta.hpp:28:28: required from here
/usr/include/boost/math/special_functions/beta.hpp:695:16: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
695 | result_type operator()()
| ^~~~~~~~
In file included from /usr/include/boost/math/special_functions/gamma.hpp:18:
/usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract<long double>; U = long double]':
/usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair<long double, long double>' when C++17 is enabled changed to match C++14 in GCC 10.1
217 | value_type v = g();
| ^
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxMatrix.cpp -o omxMatrix.o
In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/SVD:38,
from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:5,
from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
from omxDefines.h:236,
from omxMatrix.h:36,
from omxMatrix.cpp:28:
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h: In member function 'void Eigen::BDCSVD<MatrixType>::structured_update(Eigen::Block<Eigen::Matrix<typename Eigen::NumTraits<typename Derived::Scalar>::Real, -1, -1, 0>, -1, -1>, const MatrixXr&, Eigen::Index) [with _MatrixType = Eigen::Matrix<double, -1, -1>]':
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:340:6: note: parameter passing for argument of type 'Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>' changed in GCC 7.1
340 | void BDCSVD<MatrixType>::structured_update(Block<MatrixXr,Dynamic,Dynamic> A, const MatrixXr &B, Index n1)
| ^~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h: In member function 'void Eigen::BDCSVD<MatrixType>::divide(Eigen::Index, Eigen::Index, Eigen::Index, Eigen::Index, Eigen::Index) [with _MatrixType = Eigen::Matrix<double, -1, -1>]':
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:542:22: note: parameter passing for argument of type 'Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>' changed in GCC 7.1
542 | structured_update(m_naiveU.block(firstCol, firstCol, n + 1, n + 1), UofSVD, (n+2)/2);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:542:22: note: parameter passing for argument of type 'Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>' changed in GCC 7.1
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:550:34: note: parameter passing for argument of type 'Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>' changed in GCC 7.1
550 | if (m_compV) structured_update(m_naiveV.block(firstRowW, firstColW, n, n), VofSVD, (n+1)/2);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:550:34: note: parameter passing for argument of type 'Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>' changed in GCC 7.1
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxNLopt.cpp -o omxNLopt.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxNPSOLSpecific.cpp -o omxNPSOLSpecific.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxNormalExpectation.cpp -o omxNormalExpectation.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxRAMExpectation.cpp -o omxRAMExpectation.o
In file included from /usr/include/c++/13/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from omxExpectation.h:32,
from omxRAMExpectation.cpp:17:
/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const RelationalRAMExpectation::addr&}; _Tp = RelationalRAMExpectation::addr; _Alloc = std::allocator<RelationalRAMExpectation::addr>]':
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector<RelationalRAMExpectation::addr>::iterator' changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:66:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = RelationalRAMExpectation::addr; _Alloc = std::allocator<RelationalRAMExpectation::addr>]',
inlined from 'int RelationalRAMExpectation::state::flattenOneRow(omxExpectation*, int, int&)' at omxRAMExpectation.cpp:1024:19:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RelationalRAMExpectation::addr*, std::vector<RelationalRAMExpectation::addr> >' changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxRFitFunction.cpp -o omxRFitFunction.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxRowFitFunction.cpp -o omxRowFitFunction.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxState.cpp -o omxState.o
In file included from /usr/include/c++/13/bits/stl_algo.h:61,
from /usr/include/c++/13/functional:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:62,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from omxState.h:31,
from omxState.cpp:22:
/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1812 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1918 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1947 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1948 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1949 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1864 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1947 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1948 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1949 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1864 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxStateSpaceExpectation.cpp -o omxStateSpaceExpectation.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxSymbolTable.cpp -o omxSymbolTable.o
In file included from /usr/include/c++/13/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from omxMatrix.h:36,
from omxSymbolTable.h:4,
from omxSymbolTable.cpp:1:
/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from 'void orderByNorm(const T&, std::vector<int>&) [with T = Eigen::Matrix<std::complex<double>, -1, 1>]' at AlgebraFunctions.h:2177:16:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxWLSFitFunction.cpp -o omxWLSFitFunction.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c optimize.c -o optimize.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c options.c -o options.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c penalty.cpp -o penalty.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c povRAM.cpp -o povRAM.o
gfortran -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -c sadmvn.f -o sadmvn.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c slsqp.c -o slsqp.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ssMLFit.cpp -o ssMLFit.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c stop.c -o stop.o
g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o OpenMx.so Compute.o ComputeGD.o ComputeNM.o ComputeNR.o ComputeSD.o FellnerFitFunction.o MarkovExpectation.o MarkovFF.o asa.o asubnp.o ba81quad.o dmvnorm.o fitMultigroup.o general.o glue.o matlogexp.o matrix.o mvbvn.o nanotimer.o omxAlgebra.o omxAlgebraFitFunction.o omxData.o omxExpectation.o omxExpectationBA81.o omxExportBackendState.o omxFIMLFitFunction.o omxFitFunction.o omxFitFunctionBA81.o omxGREMLExpectation.o omxGREMLfitfunction.o omxHessianCalculation.o omxImportFrontendState.o omxLISRELExpectation.o omxMLFitFunction.o omxMatrix.o omxNLopt.o omxNPSOLSpecific.o omxNormalExpectation.o omxRAMExpectation.o omxRFitFunction.o omxRowFitFunction.o omxState.o omxStateSpaceExpectation.o omxSymbolTable.o omxWLSFitFunction.o optimize.o options.o penalty.o povRAM.o sadmvn.o slsqp.o ssMLFit.o stop.o -fopenmp -llapack -lblas -lboost_system -lsqlite3 -lgfortran -lm -L/usr/lib/arm-linux-gnueabihf -Wl,-rpath,/usr/lib/arm-linux-gnueabihf -ltbb -ltbbmalloc -lgfortran -lm -L/usr/lib/R/lib -lR
mkdir -p ../inst/debug
cp *.gcno ../inst/debug/
cp: cannot stat '*.gcno': No such file or directory
make[1]: [Makevars:94: save-gcno] Error 1 (ignored)
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-openmx-2.21.11+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-openmx-2.21.11+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-openmx-2.21.11+dfsg/src'
installing to /<<BUILDDIR>>/r-cran-openmx-2.21.11+dfsg/debian/r-cran-openmx/usr/lib/R/site-library/00LOCK-r-cran-openmx-2.21.11+dfsg/00new/OpenMx/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'nrow' from package 'base' in package 'OpenMx'
Creating a generic function for 'ncol' from package 'base' in package 'OpenMx'
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (OpenMx)
W: Ignoring specified R dependency: R (>= 3.5.0)
I: Using r-cran-mvtnorm for Recommends:mvtnorm
I: Using r-cran-numderiv for Recommends:numderiv
I: Using r-cran-roxygen2 for Recommends:roxygen2 (>= 6.1)
I: Using r-cran-snowfall for Recommends:snowfall
I: Using r-cran-lme4 by changing version to for Recommends:lme4
I: Using r-cran-covr for Recommends:covr
I: Using r-cran-testthat for Recommends:testthat
I: Using r-cran-knitr for Recommends:knitr
I: Using r-cran-markdown for Recommends:markdown
I: Using r-cran-rmarkdown for Recommends:rmarkdown
I: Using r-cran-reshape2 for Recommends:reshape2
I: Using r-cran-ggplot2 for Recommends:ggplot2
I: Using r-cran-roxygen2 for Suggests:roxygen2 (>= 6.1)
I: Using r-cran-rpf for Suggests:rpf (>= 0.45)
W: Cannot find a debian package for Suggests:umx
W: Cannot find a debian package for Suggests:ifaTools
I: Using r-cran-digest for Imports:digest
I: Using r-cran-mass for Imports:MASS
I: Version replacement between package version 1.2-16 and Debian version 1.6-5-1
suspicious. Do not replace anything.
I: Using r-cran-matrix by changing version to (>= 1.2-16) for Imports:Matrix (>= 1.2-16)
I: Using r-cran-rcpp for Imports:Rcpp
I: Using r-cran-rcppparallel for Imports:RcppParallel
I: Using r-cran-lifecycle for Imports:lifecycle
I: Using r-cran-rcpp for LinkingTo:Rcpp
I: Using r-cran-rcppeigen for LinkingTo:RcppEigen (>= 0.3.3.9.4)
I: Using r-cran-rcppparallel for LinkingTo:RcppParallel
I: Using r-cran-stanheaders for LinkingTo:StanHeaders (>= 2.10.0.2)
I: Using r-cran-bh for LinkingTo:BH (>= 1.69.0-1)
I: Using r-cran-rpf for LinkingTo:rpf (>= 0.45)
I: Using r-cran-matrix by changing version to for LinkingTo:Matrix
I: Use r-cran-openmx as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-openmx-2.21.11+dfsg'
dh_fixperms
find debian \( -name "*.R" -o -name "*.txt" \) -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-openmx-2.21.11+dfsg'
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
debian/rules override_dh_gencontrol
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-openmx-2.21.11+dfsg'
rmbversion=`dpkg -l r-cran-matrix | grep 'ii' | sed 's/^.*r-cran-matrix[[:space:]]\+\([0-9.-]\+\)[[:space:]]\+.*/\1/'`; \
sed -i "s/r-cran-matrix ([^)]\+)/r-cran-matrix (>= ${rmbversion})/" debian/*substvars
rversion=`dpkg -l r-base-core | grep 'ii' | sed 's/^.*r-base-core[[:space:]]\+\([0-9.-]\+\)-[0-9]\+[[:space:]]\+.*/\1/'`; \
sed -i "s/\(r-api-[0-9.]\+\),/& r-base-core (>= ${rversion})/" debian/*substvars
dh_gencontrol
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-openmx-2.21.11+dfsg'
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-openmx-dbgsym' in '../r-cran-openmx-dbgsym_2.21.11+dfsg-2_armhf.deb'.
dpkg-deb: building package 'r-cran-openmx' in '../r-cran-openmx_2.21.11+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-cran-openmx_2.21.11+dfsg-2_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../r-cran-openmx_2.21.11+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-01-22T12:32:22Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-openmx_2.21.11+dfsg-2_armhf.changes:
-------------------------------------------
Format: 1.8
Date: Mon, 15 Jan 2024 08:06:08 +0100
Source: r-cran-openmx
Binary: r-cran-openmx r-cran-openmx-dbgsym
Architecture: armhf
Version: 2.21.11+dfsg-2
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-cran-openmx - GNU R extended structural equation modelling
Closes: 1060792
Changes:
r-cran-openmx (2.21.11+dfsg-2) unstable; urgency=medium
.
* Switch to default version of boost
Closes: #1060792
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Files:
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-openmx-dbgsym_2.21.11+dfsg-2_armhf.deb
---------------------------------------------
new Debian package, version 2.0.
size 6196160 bytes: control archive=548 bytes.
403 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-openmx-dbgsym
Source: r-cran-openmx
Version: 2.21.11+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 6576
Depends: r-cran-openmx (= 2.21.11+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for r-cran-openmx
Build-Ids: 2a6e7e3f80c77f13016d6094d81c75ff2de05808
drwxr-xr-x root/root 0 2024-01-15 07:06 ./
drwxr-xr-x root/root 0 2024-01-15 07:06 ./usr/
drwxr-xr-x root/root 0 2024-01-15 07:06 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-15 07:06 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-01-15 07:06 ./usr/lib/debug/.build-id/
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drwxr-xr-x root/root 0 2024-01-15 07:06 ./usr/share/
drwxr-xr-x root/root 0 2024-01-15 07:06 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-01-15 07:06 ./usr/share/doc/r-cran-openmx-dbgsym -> r-cran-openmx
r-cran-openmx_2.21.11+dfsg-2_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 6507752 bytes: control archive=17464 bytes.
1569 bytes, 21 lines control
59680 bytes, 607 lines md5sums
Package: r-cran-openmx
Version: 2.21.11+dfsg-2
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 13712
Depends: r-api-4.0, r-base-core (>= 4.3.2), r-cran-digest, r-cran-mass, r-cran-matrix (>= 1.6-5-1), r-cran-rcpp, r-cran-rcppparallel, r-cran-lifecycle, r-cran-rcppeigen (>= 0.3.3.9.4), r-cran-stanheaders (>= 2.10.0.2), r-cran-bh (>= 1.69.0-1), r-cran-rpf (>= 0.45), libc6 (>= 2.29), libgcc-s1 (>= 4.0), libgomp1 (>= 6), libstdc++6 (>= 13.1), libtbb12 (>= 2021.11.0), python3
Recommends: r-cran-mvtnorm, r-cran-numderiv, r-cran-roxygen2 (>= 6.1), r-cran-snowfall, r-cran-lme4, r-cran-covr, r-cran-testthat, r-cran-knitr, r-cran-markdown, r-cran-rmarkdown, r-cran-reshape2, r-cran-ggplot2
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=OpenMx
Description: GNU R extended structural equation modelling
Create structural equation models that can be manipulated
programmatically. Models may be specified with matrices or paths (LISREL
or RAM) Example models include confirmatory factor, multiple group,
mixture distribution, categorical threshold, modern test theory,
differential Fit functions include full information maximum likelihood,
maximum likelihood, and weighted least squares. equations, state space,
and many others. Support and advanced package binaries available at
<http://openmx.ssri.psu.edu>. The software is described in Neale,
Hunter, Pritikin, Zahery, Brick, Kirkpatrick, Estabrook, Bates, Maes, &
Boker (2016) <doi:10.1007/s11336-014-9435-8>.
drwxr-xr-x root/root 0 2024-01-15 07:06 ./
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-rw-r--r-- root/root 2483 2024-01-15 07:06 ./usr/lib/R/site-library/OpenMx/CITATION
-rw-r--r-- root/root 6824 2024-01-15 07:06 ./usr/lib/R/site-library/OpenMx/DESCRIPTION
-rw-r--r-- root/root 20966 2024-01-15 07:06 ./usr/lib/R/site-library/OpenMx/INDEX
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-rw-r--r-- root/root 12103 2024-01-15 07:06 ./usr/lib/R/site-library/OpenMx/Meta/Rd.rds
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-rw-r--r-- root/root 78948 2024-01-15 07:06 ./usr/lib/R/site-library/OpenMx/NEWS.md
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-rw-r--r-- root/root 11729 2024-01-15 07:06 ./usr/lib/R/site-library/OpenMx/demo/AlternativeApproaches.R
-rw-r--r-- root/root 3952 2024-01-15 07:06 ./usr/lib/R/site-library/OpenMx/demo/BivariateCorrelation.R
-rw-r--r-- root/root 6235 2024-01-15 07:06 ./usr/lib/R/site-library/OpenMx/demo/BivariateHeterogeneity_MatrixRaw.R
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-rw-r--r-- root/root 12962 2024-01-15 07:06 ./usr/lib/R/site-library/OpenMx/demo/BivariateSaturated.R
-rw-r--r-- root/root 4361 2024-01-15 07:06 ./usr/lib/R/site-library/OpenMx/demo/BivariateSaturated_MatrixCov.R
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-rw-r--r-- root/root 4712 2024-01-15 07:06 ./usr/lib/R/site-library/OpenMx/demo/DefinitionMeans_MatrixRaw.R
-rw-r--r-- root/root 4887 2024-01-15 07:06 ./usr/lib/R/site-library/OpenMx/demo/DefinitionMeans_PathRaw.R
-rw-r--r-- root/root 5490 2024-01-15 07:06 ./usr/lib/R/site-library/OpenMx/demo/GrowthMixtureModel_MatrixRaw.R
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+------------------------------------------------------------------------------+
| Post Build |
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+------------------------------------------------------------------------------+
| Cleanup |
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Purging /<<BUILDDIR>>
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+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 48160
Build-Time: 1757
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 1137
Job: r-cran-openmx_2.21.11+dfsg-2
Machine Architecture: armhf
Package: r-cran-openmx
Package-Time: 2913
Source-Version: 2.21.11+dfsg-2
Space: 48160
Status: successful
Version: 2.21.11+dfsg-2
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Finished at 2024-01-22T12:32:22Z
Build needed 00:48:33, 48160k disk space