r-cran-openmx →
2.21.10+dfsg-1 →
armhf → 2023-11-25 06:30:02
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| r-cran-openmx 2.21.10+dfsg-1 (armhf) Sat, 25 Nov 2023 05:40:36 +0000 |
+==============================================================================+
Package: r-cran-openmx
Version: 2.21.10+dfsg-1
Source Version: 2.21.10+dfsg-1
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-7b9c255a-d0d8-4d54-8cad-e8f4bfe2b348' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.3 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.9 MB]
Fetched 29.2 MB in 10s (3022 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-openmx' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-openmx.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-openmx.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3924 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-cran-openmx 2.21.10+dfsg-1 (dsc) [2542 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-cran-openmx 2.21.10+dfsg-1 (tar) [3913 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-cran-openmx 2.21.10+dfsg-1 (diff) [7904 B]
Fetched 3924 kB in 0s (8367 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-openmx-m1LrQs/r-cran-openmx-2.21.10+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-openmx-m1LrQs' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ihzkVW/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ihzkVW/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ihzkVW/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ihzkVW/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ihzkVW/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ihzkVW/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ihzkVW/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ihzkVW/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (9120 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 20 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ihzkVW/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (77.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12856 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-digest, r-cran-mass, r-cran-matrix, r-cran-rcpp, r-cran-rcppparallel, r-cran-lifecycle, r-cran-rcppeigen (>= 0.3.3.9.4), r-cran-stanheaders, r-cran-bh, r-cran-rpf, libboost-system1.81-dev, libsqlite3-dev, libzstd-dev
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-digest, r-cran-mass, r-cran-matrix, r-cran-rcpp, r-cran-rcppparallel, r-cran-lifecycle, r-cran-rcppeigen (>= 0.3.3.9.4), r-cran-stanheaders, r-cran-bh, r-cran-rpf, libboost-system1.81-dev, libsqlite3-dev, libzstd-dev
dpkg-deb: building package 'sbuild-build-depends-r-cran-openmx-dummy' in '/<<BUILDDIR>>/resolver-ihzkVW/apt_archive/sbuild-build-depends-r-cran-openmx-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-cran-openmx-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ihzkVW/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ihzkVW/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ihzkVW/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ihzkVW/apt_archive ./ Sources [611 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ihzkVW/apt_archive ./ Packages [686 B]
Fetched 2630 B in 0s (13.5 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-cran-openmx build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils bsdutils
ca-certificates dctrl-tools debhelper dh-autoreconf dh-r
dh-strip-nondeterminism dwz file fontconfig fontconfig-config
fonts-dejavu-core fonts-dejavu-mono gettext gettext-base gfortran
gfortran-13 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libblkid1 libboost-system1.81-dev libboost-system1.81.0
libboost1.81-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl
libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3-gnutls
libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl
libhwloc15 libice6 libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4
liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmount1 libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14
libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libsmartcols1 libsqlite3-0
libsqlite3-dev libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtbb-dev libtbb12
libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libthai-data libthai0 libtiff6
libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl
libuuid1 libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 libzstd-dev littler m4 man-db mount openssl pkg-config
pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-cran-bh r-cran-cli
r-cran-digest r-cran-glue r-cran-lattice r-cran-lifecycle r-cran-littler
r-cran-mass r-cran-matrix r-cran-mvtnorm r-cran-pkgkitten r-cran-rcpp
r-cran-rcppeigen r-cran-rcppparallel r-cran-rlang r-cran-rpf
r-cran-stanheaders ucf unzip util-linux util-linux-extra x11-common xauth
xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-13-doc libcoarrays-dev groff liblapack-doc
libboost1.81-doc libboost-atomic1.81-dev libboost-chrono1.81-dev
libboost-container1.81-dev libboost-context1.81-dev
libboost-contract1.81-dev libboost-coroutine1.81-dev
libboost-date-time1.81-dev libboost-exception1.81-dev libboost-fiber1.81-dev
libboost-filesystem1.81-dev libboost-graph1.81-dev
libboost-graph-parallel1.81-dev libboost-iostreams1.81-dev
libboost-locale1.81-dev libboost-log1.81-dev libboost-math1.81-dev
libboost-mpi1.81-dev libboost-mpi-python1.81-dev libboost-numpy1.81-dev
libboost-program-options1.81-dev libboost-python1.81-dev
libboost-random1.81-dev libboost-regex1.81-dev
libboost-serialization1.81-dev libboost-stacktrace1.81-dev
libboost-test1.81-dev libboost-thread1.81-dev libboost-timer1.81-dev
libboost-type-erasure1.81-dev libboost-wave1.81-dev libboost1.81-tools-dev
libmpfrc++-dev libntl-dev libboost-nowide1.81-dev low-memory-monitor icu-doc
liblzma-doc cryptsetup-bin ncurses-doc libscalar-number-perl readline-doc
sqlite3-doc libtbb-doc tcl8.6 tk8.6 libtool-doc gcj-jdk
libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev
m4-doc apparmor less www-browser nfs-common libmail-box-perl elpa-ess
r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
r-cran-callr r-cran-covr r-cran-crayon r-cran-htmltools r-cran-htmlwidgets
r-cran-knitr r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot
r-cran-rstudioapi r-cran-tibble r-cran-whoami r-cran-dbi r-cran-dplyr
r-cran-forcats r-cran-ggplot2 r-cran-magrittr r-cran-r.utils r-cran-rsqlite
r-cran-stringr r-cran-waldo r-cran-withr r-cran-getopt r-cran-inline
r-cran-fs r-cran-pillar r-cran-testthat r-cran-usethis r-cran-vctrs
dosfstools kbd util-linux-locales
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libio-compress-brotli-perl
libhwloc-plugins libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix
libltdl-dev uuid-runtime libmail-sendmail-perl r-recommended r-doc-html
r-cran-testthat r-cran-withr r-cran-mockery r-cran-vctrs r-cran-covr
r-cran-crayon r-cran-knitr r-cran-lintr r-cran-rmarkdown r-cran-tibble
r-cran-tidyverse r-cran-runit r-cran-roxygen2 r-cran-ggplot2 r-cran-reshape2
r-cran-gridextra r-cran-numderiv r-cran-markdown r-cran-rstan
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libboost-system1.81-dev
libboost-system1.81.0 libboost1.81-dev libbrotli1 libbsd0 libbz2-dev
libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl
libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1
libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libhwloc15 libice6 libicu-dev
libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libsqlite3-dev libssh2-1
libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
libtbb-dev libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libthai-data
libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 libzstd-dev littler m4 man-db openssl pkg-config pkgconf
pkgconf-bin po-debconf r-base-core r-base-dev r-cran-bh r-cran-cli
r-cran-digest r-cran-glue r-cran-lattice r-cran-lifecycle r-cran-littler
r-cran-mass r-cran-matrix r-cran-mvtnorm r-cran-pkgkitten r-cran-rcpp
r-cran-rcppeigen r-cran-rcppparallel r-cran-rlang r-cran-rpf
r-cran-stanheaders sbuild-build-depends-r-cran-openmx-dummy ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
bsdutils libblkid1 libmount1 libsmartcols1 libsqlite3-0 libuuid1 mount
util-linux util-linux-extra
9 upgraded, 195 newly installed, 0 to remove and 11 not upgraded.
Need to get 121 MB of archives.
After this operation, 482 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ihzkVW/apt_archive ./ sbuild-build-depends-r-cran-openmx-dummy 0.invalid.0 [980 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.2-6 [86.5 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.2-6 [102 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf util-linux-extra armhf 2.39.2-6 [135 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.2-6 [1110 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.2-6 [134 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.2-6 [145 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libmount1 armhf 2.39.2-6 [167 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libsqlite3-0 armhf 3.44.0-1 [762 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf libuuid1 armhf 2.39.2-6 [28.1 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-6 [81.2 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-1 [1358 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.0.11-1 [1367 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-13 [156 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.8 [82.1 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:34 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:36 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-13 [1201 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.8 [956 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf zip armhf 3.0-13 [207 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf unzip armhf 6.0-28 [147 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf libpaper1 armhf 1.1.29 [11.9 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf libpaper-utils armhf 1.1.29 [8416 B]
Get:48 http://172.17.4.1/private trixie-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-2 [258 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.58.0-1 [61.7 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-2 [195 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 8.4.0-2+rpi1 [362 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.1-4 [1257 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-5+rpi1 [247 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-3 [188 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-3 [40.3 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-3 [30.5 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-3 [133 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-1 [298 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.2-1 [26.4 MB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libgfortran-13-dev armhf 13.2.0-5+rpi1 [293 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf gfortran-13 armhf 13.2.0-5+rpi1 [7840 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:13.2.0-1+rpi1 [1424 B]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20231016-1 [80.0 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20231016-1 [290 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-1.3 [123 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.40-2 [336 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.4-0.1 [269 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-4 [174 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-4 [9956 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.2-1 [4504 B]
Get:131 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.06-1 [10.7 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.45-1 [82.0 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:147 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:148 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2206-1 [795 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1 [12.0 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.4.0-2+rpi1 [358 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10 [55.8 kB]
Get:175 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:176 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20231109 [41.6 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf libboost1.81-dev armhf 1.81.0-7 [10.4 MB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf libboost-system1.81.0 armhf 1.81.0-7 [230 kB]
Get:179 http://172.17.4.1/private trixie-staging/main armhf libboost-system1.81-dev armhf 1.81.0-7 [231 kB]
Get:180 http://172.17.4.1/private trixie-staging/main armhf libhwloc15 armhf 2.9.3-2 [125 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf libsqlite3-dev armhf 3.44.0-1 [937 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf libtbbmalloc2 armhf 2021.9.0-2+rpi1 [40.7 kB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf libtbbbind-2-5 armhf 2021.9.0-2+rpi1 [12.5 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf libtbb12 armhf 2021.9.0-2+rpi1 [67.3 kB]
Get:185 http://172.17.4.1/private trixie-staging/main armhf libtbb-dev armhf 2021.9.0-2+rpi1 [192 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf libzstd-dev armhf 1.5.5+dfsg2-2 [301 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf r-cran-littler armhf 0.3.18-2 [86.0 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf littler all 0.3.18-2 [14.8 kB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf r-cran-bh all 1.81.0-1 [5776 B]
Get:190 http://172.17.4.1/private trixie-staging/main armhf r-cran-cli armhf 3.6.1-1 [1307 kB]
Get:191 http://172.17.4.1/private trixie-staging/main armhf r-cran-digest armhf 0.6.33-1 [185 kB]
Get:192 http://172.17.4.1/private trixie-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:193 http://172.17.4.1/private trixie-staging/main armhf r-cran-lattice armhf 0.22-5-1 [1393 kB]
Get:194 http://172.17.4.1/private trixie-staging/main armhf r-cran-rlang armhf 1.1.1-1 [1653 kB]
Get:195 http://172.17.4.1/private trixie-staging/main armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
Get:196 http://172.17.4.1/private trixie-staging/main armhf r-cran-mass armhf 7.3-60-2 [1114 kB]
Get:197 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrix armhf 1.6-3-1 [3687 kB]
Get:198 http://172.17.4.1/private trixie-staging/main armhf r-cran-mvtnorm armhf 1.2-3-1 [720 kB]
Get:199 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgkitten all 0.2.3-1 [26.7 kB]
Get:200 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcpp armhf 1.0.11-1 [2043 kB]
Get:201 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcppeigen armhf 0.3.3.9.4-1 [1150 kB]
Get:202 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcppparallel armhf 5.1.7+dfsg-1 [302 kB]
Get:203 http://172.17.4.1/private trixie-staging/main armhf r-cran-rpf armhf 1.0.14+dfsg-1 [632 kB]
Get:204 http://172.17.4.1/private trixie-staging/main armhf r-cran-stanheaders armhf 2.26.28-2 [1301 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking util-linux-extra (2.39.2-6) over (2.39.2-5) ...
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invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Creating config file /etc/papersize with new version
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-13) ...
Setting up libpcre2-dev:armhf (10.42-4) ...
Setting up libtool (2.4.7-7) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up fontconfig-config (2.14.2-6) ...
Setting up libpng-dev:armhf (1.6.40-2) ...
Setting up libjpeg-dev:armhf (1:2.1.5-2) ...
Setting up libcurl3-gnutls:armhf (8.4.0-2+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libpaper-utils (1.1.29) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:armhf (8.2-1.3) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up libtbbbind-2-5:armhf (2021.9.0-2+rpi1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up gfortran-13 (13.2.0-5+rpi1) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.114-1) ...
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libcurl4:armhf (8.4.0-2+rpi1) ...
Setting up libx11-6:armhf (2:1.8.7-1) ...
Setting up libharfbuzz0b:armhf (8.0.1-1) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (6.45-1) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-10) ...
Setting up libtbb12:armhf (2021.9.0-2+rpi1) ...
Setting up man-db (2.12.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:13.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1.1) ...
Setting up xauth (1:1.1.2-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libtbb-dev:armhf (2021.9.0-2+rpi1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up debhelper (13.11.8) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up libmoose-perl:armhf (2.2206-1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up fontconfig (2.14.2-6) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Setting up libpango-1.0-0:armhf (1.51.0+ds-3) ...
Setting up libcairo2:armhf (1.18.0-1) ...
Setting up libpangoft2-1.0-0:armhf (1.51.0+ds-3) ...
Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-3) ...
Setting up r-base-core (4.3.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-lattice (0.22-5-1) ...
Setting up r-cran-pkgkitten (0.2.3-1) ...
Setting up r-cran-rcppparallel (5.1.7+dfsg-1) ...
Setting up r-cran-littler (0.3.18-2) ...
Setting up r-cran-rcpp (1.0.11-1) ...
Setting up r-cran-rlang (1.1.1-1) ...
Setting up r-base-dev (4.3.2-1) ...
Setting up littler (0.3.18-2) ...
Setting up r-cran-digest (0.6.33-1) ...
Setting up r-cran-mass (7.3-60-2) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-cli (3.6.1-1) ...
Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
Setting up r-cran-mvtnorm (1.2-3-1) ...
Setting up r-cran-matrix (1.6-3-1) ...
Setting up dh-r (20231109) ...
Setting up r-cran-rcppeigen (0.3.3.9.4-1) ...
Setting up r-cran-stanheaders (2.26.28-2) ...
Setting up r-cran-rpf (1.0.14+dfsg-1) ...
Setting up sbuild-build-depends-r-cran-openmx-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.37-12+rpi2) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-5+rpi1 gcc-12_12.3.0-10+rpi1 gcc-13_13.2.0-5+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++-13-dev_13.2.0-5+rpi1 libstdc++6_13.2.0-5+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.2 bash_5.2.15-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.2-6 bsdutils_1:2.39.2-6 build-essential_12.10 bzip2_1.0.8-5+b2 ca-certificates_20230311 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-10+rpi1 cpp-13_13.2.0-5+rpi1 dash_0.5.12-6 dctrl-tools_2.24-3 debconf_1.5.82 debhelper_13.11.8 debianutils_5.14 dh-autoreconf_20 dh-r_20231109 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-6 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-5+rpi1 gcc_4:13.2.0-1+rpi1 gcc-12_12.3.0-10+rpi1 gcc-12-base_12.3.0-10+rpi1 gcc-13_13.2.0-5+rpi1 gcc-13-base_13.2.0-5+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-13 gettext-base_0.21-13 gfortran_4:13.2.0-1+rpi1 gfortran-13_13.2.0-5+rpi1 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 icu-devtools_72.1-4 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-5 libacl1_2.3.1-3 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-5+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-5+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.41-6+rpi1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.2-6 libboost-system1.81-dev_1.81.0-7 libboost-system1.81.0_1.81.0-7 libboost1.81-dev_1.81.0-7 libbrotli1_1.0.9-2+b3 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.37-12+rpi2 libc-dev-bin_2.37-12+rpi2 libc6_2.37-12+rpi2 libc6-dev_2.37-12+rpi2 libcairo2_1.18.0-1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcc1-0_13.2.0-5+rpi1 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2+b1 libclone-perl_0.46-1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libcurl3-gnutls_8.4.0-2+rpi1 libcurl4_8.4.0-2+rpi1 libdata-optlist-perl_0.114-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.271 libdebhelper-perl_13.11.8 libdeflate0_1.18-1 libdevel-callchecker-perl_0.008-2 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-2 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.22.1+rpi1 libdynaloader-functions-perl_0.003-3 libelf1_0.188-2.1+rpi1 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 libexpat1_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.1-1 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libfontconfig1_2.14.2-6 libfreetype6_2.13.2+dfsg-1 libfribidi0_1.0.13-3 libgcc-12-dev_12.3.0-10+rpi1 libgcc-13-dev_13.2.0-5+rpi1 libgcc-s1_13.2.0-5+rpi1 libgcrypt20_1.10.2-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran-13-dev_13.2.0-5+rpi1 libgfortran5_13.2.0-5+rpi1 libglib2.0-0_2.78.1-4 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.1-4 libgomp1_13.2.0-5+rpi1 libgpg-error0_1.47-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20.1-5 libharfbuzz0b_8.0.1-1 libhogweed6_3.9.1-2 libhttp-date-perl_6.06-1 libhttp-message-perl_6.45-1 libhwloc15_2.9.3-2 libice6_2:1.0.10-1 libicu-dev_72.1-4 libicu72_72.1-4 libidn2-0_2.3.4-1 libio-html-perl_1.004-3 libisl23_0.26-3 libjansson4_2.14-2 libjbig0_2.1-6.1 libjpeg-dev_1:2.1.5-2 libjpeg62-turbo_1:2.1.5-2 libjpeg62-turbo-dev_1:2.1.5-2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libksba8_1.6.4-2 liblapack-dev_3.11.0-2 liblapack3_3.11.0-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblerc4_4.0.0+ds-3 liblwp-mediatypes-perl_6.04-2 liblz4-1_1.9.4-1+rpi1+b1 liblzma-dev_5.4.4-0.1 liblzma5_5.4.4-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmodule-implementation-perl_0.09-2 libmodule-runtime-conflicts-perl_0.003-2 libmodule-runtime-perl_0.016-2 libmoose-perl_2.2206-1 libmount1_2.39.2-6 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libmro-compat-perl_0.15-2 libnamespace-clean-perl_0.27-2 libncurses-dev_6.4+20231016-1 libncurses6_6.4+20231016-1 libncursesw6_6.4+20231016-1 libnettle8_3.9.1-2 libnghttp2-14_1.58.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.0-5 libpackage-deprecationmanager-perl_0.18-1 libpackage-stash-perl_0.40-1 libpackage-stash-xs-perl_0.30-1+b1 libpam-cap_1:2.66-4 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpango-1.0-0_1.51.0+ds-3 libpangocairo-1.0-0_1.51.0+ds-3 libpangoft2-1.0-0_1.51.0+ds-3 libpaper-utils_1.1.29 libpaper1_1.1.29 libparams-classify-perl_0.015-2+b1 libparams-util-perl_1.102-2+b1 libpcre2-16-0_10.42-4 libpcre2-32-0_10.42-4 libpcre2-8-0_10.42-4 libpcre2-dev_10.42-4 libpcre2-posix3_10.42-4 libpcre3_2:8.39-15 libperl5.36_5.36.0-9 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpkgconf3_1.8.1-1 libpng-dev_1.6.40-2 libpng16-16_1.6.40-2 libpsl5_0.21.2-1+b1 libreadline-dev_8.2-1.3 libreadline8_8.2-1.3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg1-3 libsasl2-modules-db_2.1.28+dfsg1-3 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol1_3.1-1 libsepol2_3.5-1 libsframe1_2.41-6+rpi1 libsharpyuv0_1.3.2-0.3 libsm6_2:1.2.3-1 libsmartcols1_2.39.2-6 libsqlite3-0_3.44.0-1 libsqlite3-dev_3.44.0-1 libss2_1.47.0-2 libssh2-1_1.11.0-2 libssl1.1_1.1.1o-1 libssl3_3.0.11-1 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++-13-dev_13.2.0-5+rpi1 libstdc++6_13.2.0-5+rpi1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3 libsub-install-perl_0.929-1 libsub-name-perl_0.27-1 libsub-override-perl_0.09-4 libswitch-perl_2.17-3 libsystemd0_254.5-1+rpi1 libtasn1-6_4.19.0-3 libtbb-dev_2021.9.0-2+rpi1 libtbb12_2021.9.0-2+rpi1 libtbbbind-2-5_2021.9.0-2+rpi1 libtbbmalloc2_2021.9.0-2+rpi1 libtcl8.6_8.6.13+dfsg-2 libtext-glob-perl_0.11-3 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff6_4.5.1+git230720-1 libtimedate-perl_2.3300-2 libtinfo6_6.4+20231016-1 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.13-2 libtool_2.4.7-7 libtry-tiny-perl_0.31-2 libubsan1_13.2.0-5+rpi1 libuchardet0_0.0.7-1 libudev1_254.5-1+rpi1 libunistring2_1.0-2 libunistring5_1.1-2 liburi-perl_5.21-1 libuuid1_2.39.2-6 libvariable-magic-perl_0.63-1+b1 libwebp7_1.3.2-0.3 libwww-curl-perl_4.17-10 libwww-curl-simple-perl_0.100191-3 libx11-6_2:1.8.7-1 libx11-data_2:1.8.7-1 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.3 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1.1 libxxhash0_0.8.2-2 libzstd-dev_1.5.5+dfsg2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1 littler_0.3.18-2 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20230808-1 mount_2.39.2-6 nano_7.2-1 ncurses-base_6.4+20231016-1 ncurses-bin_6.4+20231016-1 netbase_6.4 openssl_3.0.11-1 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-9 perl-base_5.36.0-9 perl-modules-5.36_5.36.0-9 pinentry-curses_1.2.1-1 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 r-base-core_4.3.2-1 r-base-dev_4.3.2-1 r-cran-bh_1.81.0-1 r-cran-cli_3.6.1-1 r-cran-digest_0.6.33-1 r-cran-glue_1.6.2-1 r-cran-lattice_0.22-5-1 r-cran-lifecycle_1.0.4+dfsg-1 r-cran-littler_0.3.18-2 r-cran-mass_7.3-60-2 r-cran-matrix_1.6-3-1 r-cran-mvtnorm_1.2-3-1 r-cran-pkgkitten_0.2.3-1 r-cran-rcpp_1.0.11-1 r-cran-rcppeigen_0.3.3.9.4-1 r-cran-rcppparallel_5.1.7+dfsg-1 r-cran-rlang_1.1.1-1 r-cran-rpf_1.0.14+dfsg-1 r-cran-stanheaders_2.26.28-2 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-openmx-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 sysvinit-utils_3.08-3 tar_1.34+dfsg-1.2 tzdata_2023c-10 ucf_3.0043+nmu1 unzip_6.0-28 usrmerge_38 util-linux_2.39.2-6 util-linux-extra_2.39.2-6 x11-common_1:7.7+23 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1 xz-utils_5.4.4-0.1 zip_3.0-13 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Sun Nov 19 17:49:50 2023 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-cran-openmx_2.21.10+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-cran-openmx in /<<BUILDDIR>>/r-cran-openmx-2.21.10+dfsg
dpkg-source: info: unpacking r-cran-openmx_2.21.10+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-cran-openmx_2.21.10+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying use_debian_packaged_libs.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-7b9c255a-d0d8-4d54-8cad-e8f4bfe2b348
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-cran-openmx
dpkg-buildpackage: info: source version 2.21.10+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-cran-openmx/ -a -O--buildsystem=R
I: R packages needed for DEP8: mvtnorm, numderiv, roxygen2 (>= 6.1), snowfall, lme4, covr, testthat, knitr, markdown, rmarkdown, reshape2, ggplot2
I: R Package: OpenMx Version: 2.21.10
I: Building using R version 4.3.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Sun, 19 Nov 2023 18:32:16 +0100
mkdir -p /<<BUILDDIR>>/r-cran-openmx-2.21.10\+dfsg/debian/r-cran-openmx/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-cran-openmx-2.21.10\+dfsg/debian/r-cran-openmx/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 19 Nov 2023 18:32:16 +0100'"
* installing *source* package 'OpenMx' ...
files 'inst/doc/factor_analysis.html', 'inst/doc/regularization.html' are missing
files 'inst/tools/mxAlgebraParser.py', 'inst/tools/mxParser.py', 'inst/tools/sphinxToR.py', 'src/Makevars.in' have the wrong MD5 checksums
** using staged installation
NOTE: ./configure is not an autoconf generated script.
Change default C/C++ compiler and default compile flags by editing ~/.R/Makevars
** libs
using C compiler: 'gcc (Raspbian 13.2.0-5+rpi1) 13.2.0'
using Fortran compiler: 'GNU Fortran (Raspbian 13.2.0-5+rpi1) 13.2.0'
using C++ compiler: 'g++ (Raspbian 13.2.0-5+rpi1) 13.2.0'
using C++17
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-openmx-2.21.10+dfsg/src'
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c Compute.cpp -o Compute.o
In file included from /usr/include/c++/13/bits/stl_algo.h:61,
from /usr/include/c++/13/algorithm:61,
from Compute.cpp:17:
/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1812 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1918 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1947 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1948 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1949 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1864 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1947 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1948 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1949 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1864 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ComputeGD.cpp -o ComputeGD.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ComputeNM.cpp -o ComputeNM.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ComputeNR.cpp -o ComputeNR.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ComputeSD.cpp -o ComputeSD.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c FellnerFitFunction.cpp -o FellnerFitFunction.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c MarkovExpectation.cpp -o MarkovExpectation.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c MarkovFF.cpp -o MarkovFF.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c asa.c -o asa.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c asubnp.cpp -o asubnp.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ba81quad.cpp -o ba81quad.o
In file included from /usr/include/c++/13/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from ba81quad.h:21,
from ba81quad.cpp:18:
/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:66:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >]' at ba81quad.h:1112:21:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >]' at ba81quad.h:1148:25:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >]' at ba81quad.h:1158:21:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c dmvnorm.cpp -o dmvnorm.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c fitMultigroup.cpp -o fitMultigroup.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c general.c -o general.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c glue.cpp -o glue.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c matlogexp.cpp -o matlogexp.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c matrix.cpp -o matrix.o
gfortran -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -c mvbvn.f -o mvbvn.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c nanotimer.cpp -o nanotimer.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxAlgebra.cpp -o omxAlgebra.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxAlgebraFitFunction.cpp -o omxAlgebraFitFunction.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxData.cpp -o omxData.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxExpectation.cpp -o omxExpectation.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxExpectationBA81.cpp -o omxExpectationBA81.o
In file included from /usr/include/c++/13/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from omxExpectation.h:32,
from omxExpectationBA81.h:20,
from omxExpectationBA81.cpp:20:
/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:66:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<double, -1, 1>]' at ba81quad.h:1112:21:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<double, -1, 1>]' at ba81quad.h:1148:25:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<double, -1, 1>]' at ba81quad.h:1158:21:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxExportBackendState.cpp -o omxExportBackendState.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxFIMLFitFunction.cpp -o omxFIMLFitFunction.o
In file included from /usr/include/c++/13/bits/stl_algo.h:61,
from /usr/include/c++/13/functional:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:62,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from omxFIMLFitFunction.cpp:18:
/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1918 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1812 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'nanotime_t omxFIMLFitFunction::getMedianElapsedTime()' at omxFIMLFitFunction.cpp:27:11:
/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1947 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1948 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1949 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'nanotime_t omxFIMLFitFunction::getMedianElapsedTime()' at omxFIMLFitFunction.cpp:27:11:
/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1864 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60:
/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]' at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from 'virtual void omxFIMLFitFunction::compute2(int, FitContext*)' at omxFIMLFitFunction.cpp:945:25:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxFitFunction.cpp -o omxFitFunction.o
In file included from /usr/include/c++/13/bits/stl_algo.h:61,
from /usr/include/c++/13/functional:67,
from omxFitFunction.h:32,
from omxFitFunction.cpp:31:
/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1812 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1918 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1947 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1948 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1949 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1864 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1947 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1948 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1949 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1864 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxFitFunctionBA81.cpp -o omxFitFunctionBA81.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxGREMLExpectation.cpp -o omxGREMLExpectation.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxGREMLfitfunction.cpp -o omxGREMLfitfunction.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxHessianCalculation.cpp -o omxHessianCalculation.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxImportFrontendState.cpp -o omxImportFrontendState.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxLISRELExpectation.cpp -o omxLISRELExpectation.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxMLFitFunction.cpp -o omxMLFitFunction.o
In file included from /usr/include/boost/math/special_functions/detail/bessel_jy.hpp:14,
from /usr/include/boost/math/special_functions/bessel.hpp:20,
from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/bessel_first_kind.hpp:6,
from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:28,
from /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/fun.hpp:7,
from /usr/lib/R/site-library/StanHeaders/include/stan/math/mix.hpp:14,
from omxMLFitFunction.cpp:21:
/usr/include/boost/math/special_functions/gamma.hpp: In instantiation of 'boost::math::detail::upper_incomplete_gamma_fract<T>::result_type boost::math::detail::upper_incomplete_gamma_fract<T>::operator()() [with T = double; result_type = std::pair<double, double>]':
/usr/include/boost/math/tools/fraction.hpp:217:20: required from 'typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract<double>; U = double; typename detail::fraction_traits<Gen>::result_type = double; uintmax_t = long long unsigned int]'
/usr/include/boost/math/tools/fraction.hpp:252:31: required from 'typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_a(Gen&, const U&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract<double>; U = double; typename detail::fraction_traits<Gen>::result_type = double]'
/usr/include/boost/math/special_functions/gamma.hpp:314:68: required from 'T boost::math::detail::upper_gamma_fraction(T, T, T) [with T = double]'
/usr/include/boost/math/special_functions/gamma.hpp:1176:44: required from 'T boost::math::detail::gamma_incomplete_imp(T, T, bool, bool, const Policy&, T*) [with T = double; Policy = boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]'
/usr/include/boost/math/special_functions/gamma.hpp:2128:35: required from 'typename boost::math::tools::promote_args<T1, T2>::type boost::math::gamma_p(RT1, RT2, const Policy&) [with RT1 = double; RT2 = double; Policy = policies::policy<policies::overflow_error<boost::math::policies::errno_on_error>, policies::pole_error<boost::math::policies::errno_on_error>, policies::promote_double<false>, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; typename tools::promote_args<T1, T2>::type = double]'
/usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/gamma_p.hpp:76:30: required from here
/usr/include/boost/math/special_functions/gamma.hpp:299:16: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
299 | result_type operator()()
| ^~~~~~~~
/usr/include/boost/math/special_functions/gamma.hpp: In instantiation of 'boost::math::detail::upper_incomplete_gamma_fract<T>::result_type boost::math::detail::upper_incomplete_gamma_fract<T>::operator()() [with T = long double; result_type = std::pair<long double, long double>]':
/usr/include/boost/math/tools/fraction.hpp:217:20: required from 'typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract<long double>; U = long double; typename detail::fraction_traits<Gen>::result_type = long double; uintmax_t = long long unsigned int]'
/usr/include/boost/math/tools/fraction.hpp:252:31: required from 'typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_a(Gen&, const U&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract<long double>; U = long double; typename detail::fraction_traits<Gen>::result_type = long double]'
/usr/include/boost/math/special_functions/gamma.hpp:314:68: required from 'T boost::math::detail::upper_gamma_fraction(T, T, T) [with T = long double]'
/usr/include/boost/math/special_functions/gamma.hpp:1176:44: required from 'T boost::math::detail::gamma_incomplete_imp(T, T, bool, bool, const Policy&, T*) [with T = long double; Policy = boost::math::policies::policy<boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]'
/usr/include/boost/math/special_functions/gamma.hpp:2097:35: required from 'typename boost::math::tools::promote_args<T1, T2>::type boost::math::gamma_q(RT1, RT2, const Policy&) [with RT1 = double; RT2 = double; Policy = policies::policy<policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; typename tools::promote_args<T1, T2>::type = double]'
/usr/include/boost/math/special_functions/gamma.hpp:2105:18: required from 'typename boost::math::tools::promote_args<T1, T2>::type boost::math::gamma_q(RT1, RT2) [with RT1 = double; RT2 = double; typename tools::promote_args<T1, T2>::type = double]'
/usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/gamma_q.hpp:55:72: required from here
/usr/include/boost/math/special_functions/gamma.hpp:299:16: note: parameter passing for argument of type 'std::pair<long double, long double>' when C++17 is enabled changed to match C++14 in GCC 10.1
In file included from /usr/include/boost/math/special_functions/binomial.hpp:15,
from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/choose.hpp:7,
from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun.hpp:43:
/usr/include/boost/math/special_functions/beta.hpp: In instantiation of 'boost::math::detail::ibeta_fraction2_t<T>::result_type boost::math::detail::ibeta_fraction2_t<T>::operator()() [with T = double; result_type = std::pair<double, double>]':
/usr/include/boost/math/tools/fraction.hpp:123:20: required from 'typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_b(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::ibeta_fraction2_t<double>; U = double; typename detail::fraction_traits<Gen>::result_type = double; uintmax_t = long long unsigned int]'
/usr/include/boost/math/tools/fraction.hpp:156:31: required from 'typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_b(Gen&, const U&) [with Gen = boost::math::detail::ibeta_fraction2_t<double>; U = double; typename detail::fraction_traits<Gen>::result_type = double]'
/usr/include/boost/math/special_functions/beta.hpp:729:54: required from 'T boost::math::detail::ibeta_fraction2(T, T, T, T, const Policy&, bool, T*) [with T = double; Policy = boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]'
/usr/include/boost/math/special_functions/beta.hpp:1367:36: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool, T*) [with T = double; Policy = boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]'
/usr/include/boost/math/special_functions/beta.hpp:1404:20: required from 'T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool) [with T = double; Policy = boost::math::policies::policy<boost::math::policies::pole_error<boost::math::policies::errno_on_error>, boost::math::policies::overflow_error<boost::math::policies::errno_on_error>, boost::math::policies::promote_float<false>, boost::math::policies::promote_double<false>, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]'
/usr/include/boost/math/special_functions/beta.hpp:1543:93: required from 'typename boost::math::tools::promote_args<RT1, RT2, A>::type boost::math::ibeta(RT1, RT2, RT3, const Policy&) [with RT1 = double; RT2 = double; RT3 = double; Policy = policies::policy<policies::overflow_error<boost::math::policies::errno_on_error>, policies::pole_error<boost::math::policies::errno_on_error>, policies::promote_double<false>, policies::digits2<0>, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy, policies::default_policy>; typename tools::promote_args<RT1, RT2, A>::type = double]'
/usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/inc_beta.hpp:28:28: required from here
/usr/include/boost/math/special_functions/beta.hpp:692:16: note: parameter passing for argument of type 'std::pair<double, double>' when C++17 is enabled changed to match C++14 in GCC 10.1
692 | result_type operator()()
| ^~~~~~~~
In file included from /usr/include/boost/math/special_functions/gamma.hpp:18:
/usr/include/boost/math/tools/fraction.hpp: In function 'typename boost::math::tools::detail::fraction_traits<Gen>::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract<long double>; U = long double]':
/usr/include/boost/math/tools/fraction.hpp:217:15: note: parameter passing for argument of type 'std::pair<long double, long double>' when C++17 is enabled changed to match C++14 in GCC 10.1
217 | value_type v = g();
| ^
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxMatrix.cpp -o omxMatrix.o
In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/SVD:38,
from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:5,
from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:22,
from omxDefines.h:236,
from omxMatrix.h:36,
from omxMatrix.cpp:28:
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h: In member function 'void Eigen::BDCSVD<MatrixType>::structured_update(Eigen::Block<Eigen::Matrix<typename Eigen::NumTraits<typename Derived::Scalar>::Real, -1, -1, 0>, -1, -1>, const MatrixXr&, Eigen::Index) [with _MatrixType = Eigen::Matrix<double, -1, -1>]':
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:340:6: note: parameter passing for argument of type 'Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>' changed in GCC 7.1
340 | void BDCSVD<MatrixType>::structured_update(Block<MatrixXr,Dynamic,Dynamic> A, const MatrixXr &B, Index n1)
| ^~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h: In member function 'void Eigen::BDCSVD<MatrixType>::divide(Eigen::Index, Eigen::Index, Eigen::Index, Eigen::Index, Eigen::Index) [with _MatrixType = Eigen::Matrix<double, -1, -1>]':
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:542:22: note: parameter passing for argument of type 'Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>' changed in GCC 7.1
542 | structured_update(m_naiveU.block(firstCol, firstCol, n + 1, n + 1), UofSVD, (n+2)/2);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:542:22: note: parameter passing for argument of type 'Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>' changed in GCC 7.1
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:550:34: note: parameter passing for argument of type 'Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>' changed in GCC 7.1
550 | if (m_compV) structured_update(m_naiveV.block(firstRowW, firstColW, n, n), VofSVD, (n+1)/2);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:550:34: note: parameter passing for argument of type 'Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>' changed in GCC 7.1
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxNLopt.cpp -o omxNLopt.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxNPSOLSpecific.cpp -o omxNPSOLSpecific.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxNormalExpectation.cpp -o omxNormalExpectation.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxRAMExpectation.cpp -o omxRAMExpectation.o
In file included from /usr/include/c++/13/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from omxExpectation.h:32,
from omxRAMExpectation.cpp:17:
/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const RelationalRAMExpectation::addr&}; _Tp = RelationalRAMExpectation::addr; _Alloc = std::allocator<RelationalRAMExpectation::addr>]':
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector<RelationalRAMExpectation::addr>::iterator' changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:66:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = RelationalRAMExpectation::addr; _Alloc = std::allocator<RelationalRAMExpectation::addr>]',
inlined from 'int RelationalRAMExpectation::state::flattenOneRow(omxExpectation*, int, int&)' at omxRAMExpectation.cpp:1024:19:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RelationalRAMExpectation::addr*, std::vector<RelationalRAMExpectation::addr> >' changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxRFitFunction.cpp -o omxRFitFunction.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxRowFitFunction.cpp -o omxRowFitFunction.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxState.cpp -o omxState.o
In file included from /usr/include/c++/13/bits/stl_algo.h:61,
from /usr/include/c++/13/functional:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:62,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from omxState.h:31,
from omxState.cpp:22:
/usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1812 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1918 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1947 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1948 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1949 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1864 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1947 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1948 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1949 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1864 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxStateSpaceExpectation.cpp -o omxStateSpaceExpectation.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxSymbolTable.cpp -o omxSymbolTable.o
In file included from /usr/include/c++/13/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from omxMatrix.h:36,
from omxSymbolTable.h:4,
from omxSymbolTable.cpp:1:
/usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from 'void orderByNorm(const T&, std::vector<int>&) [with T = Eigen::Matrix<std::complex<double>, -1, 1>]' at AlgebraFunctions.h:2177:16:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c omxWLSFitFunction.cpp -o omxWLSFitFunction.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c optimize.c -o optimize.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c options.c -o options.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c penalty.cpp -o penalty.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c povRAM.cpp -o povRAM.o
gfortran -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -c sadmvn.f -o sadmvn.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c slsqp.c -o slsqp.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -fopenmp -DSTRICT_R_HEADERS -D_HAS_AUTO_PTR_ETC=0 -I'/usr/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ssMLFit.cpp -o ssMLFit.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -I'/usr/lib/R/library/Matrix/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c stop.c -o stop.o
g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o OpenMx.so Compute.o ComputeGD.o ComputeNM.o ComputeNR.o ComputeSD.o FellnerFitFunction.o MarkovExpectation.o MarkovFF.o asa.o asubnp.o ba81quad.o dmvnorm.o fitMultigroup.o general.o glue.o matlogexp.o matrix.o mvbvn.o nanotimer.o omxAlgebra.o omxAlgebraFitFunction.o omxData.o omxExpectation.o omxExpectationBA81.o omxExportBackendState.o omxFIMLFitFunction.o omxFitFunction.o omxFitFunctionBA81.o omxGREMLExpectation.o omxGREMLfitfunction.o omxHessianCalculation.o omxImportFrontendState.o omxLISRELExpectation.o omxMLFitFunction.o omxMatrix.o omxNLopt.o omxNPSOLSpecific.o omxNormalExpectation.o omxRAMExpectation.o omxRFitFunction.o omxRowFitFunction.o omxState.o omxStateSpaceExpectation.o omxSymbolTable.o omxWLSFitFunction.o optimize.o options.o penalty.o povRAM.o sadmvn.o slsqp.o ssMLFit.o stop.o -fopenmp -llapack -lblas -lboost_system -lsqlite3 -lgfortran -lm -L/usr/lib/arm-linux-gnueabihf -Wl,-rpath,/usr/lib/arm-linux-gnueabihf -ltbb -ltbbmalloc -lgfortran -lm -L/usr/lib/R/lib -lR
mkdir -p ../inst/debug
cp *.gcno ../inst/debug/
cp: cannot stat '*.gcno': No such file or directory
make[1]: [Makevars:94: save-gcno] Error 1 (ignored)
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-openmx-2.21.10+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-openmx-2.21.10+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-openmx-2.21.10+dfsg/src'
installing to /<<BUILDDIR>>/r-cran-openmx-2.21.10+dfsg/debian/r-cran-openmx/usr/lib/R/site-library/00LOCK-r-cran-openmx-2.21.10+dfsg/00new/OpenMx/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'nrow' from package 'base' in package 'OpenMx'
Creating a generic function for 'ncol' from package 'base' in package 'OpenMx'
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (OpenMx)
W: Ignoring specified R dependency: R (>= 3.5.0)
I: Using r-cran-mvtnorm for Recommends:mvtnorm
I: Using r-cran-numderiv for Recommends:numderiv
I: Using r-cran-roxygen2 for Recommends:roxygen2 (>= 6.1)
I: Using r-cran-snowfall for Recommends:snowfall
I: Using r-cran-lme4 for Recommends:lme4
I: Using r-cran-covr for Recommends:covr
I: Using r-cran-testthat for Recommends:testthat
I: Using r-cran-knitr for Recommends:knitr
I: Using r-cran-markdown for Recommends:markdown
I: Using r-cran-rmarkdown for Recommends:rmarkdown
I: Using r-cran-reshape2 for Recommends:reshape2
I: Using r-cran-ggplot2 for Recommends:ggplot2
I: Using r-cran-roxygen2 for Suggests:roxygen2 (>= 6.1)
I: Using r-cran-rpf for Suggests:rpf (>= 0.45)
W: Cannot find a debian package for Suggests:umx
W: Cannot find a debian package for Suggests:ifaTools
I: Using r-cran-digest for Imports:digest
I: Using r-cran-mass for Imports:MASS
I: Version replacement between package version 1.2-16 and Debian version 1.6-3-1
suspicious. Do not replace anything.
I: Using r-cran-matrix by changing version to (>= 1.2-16) for Imports:Matrix (>= 1.2-16)
I: Using r-cran-rcpp for Imports:Rcpp
I: Using r-cran-rcppparallel for Imports:RcppParallel
I: Using r-cran-lifecycle for Imports:lifecycle
I: Using r-cran-rcpp for LinkingTo:Rcpp
I: Using r-cran-rcppeigen for LinkingTo:RcppEigen (>= 0.3.3.9.4)
I: Using r-cran-rcppparallel for LinkingTo:RcppParallel
I: Using r-cran-stanheaders for LinkingTo:StanHeaders (>= 2.10.0.2)
I: Using r-cran-bh for LinkingTo:BH (>= 1.69.0-1)
I: Using r-cran-rpf for LinkingTo:rpf (>= 0.45)
I: Using r-cran-matrix by changing version to for LinkingTo:Matrix
I: Use r-cran-openmx as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-openmx-2.21.10+dfsg'
dh_fixperms
find debian \( -name "*.R" -o -name "*.txt" \) -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-openmx-2.21.10+dfsg'
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
debian/rules override_dh_gencontrol
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-openmx-2.21.10+dfsg'
rmbversion=`dpkg -l r-cran-matrix | grep 'ii' | sed 's/^.*r-cran-matrix[[:space:]]\+\([0-9.-]\+\)[[:space:]]\+.*/\1/'`; \
sed -i "s/r-cran-matrix ([^)]\+)/r-cran-matrix (>= ${rmbversion})/" debian/*substvars
rversion=`dpkg -l r-base-core | grep 'ii' | sed 's/^.*r-base-core[[:space:]]\+\([0-9.-]\+\)-[0-9]\+[[:space:]]\+.*/\1/'`; \
sed -i "s/\(r-api-[0-9.]\+\),/& r-base-core (>= ${rversion})/" debian/*substvars
dh_gencontrol
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-openmx-2.21.10+dfsg'
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-openmx-dbgsym' in '../r-cran-openmx-dbgsym_2.21.10+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-cran-openmx' in '../r-cran-openmx_2.21.10+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-cran-openmx_2.21.10+dfsg-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../r-cran-openmx_2.21.10+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-11-25T06:29:57Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-openmx_2.21.10+dfsg-1_armhf.changes:
-------------------------------------------
Format: 1.8
Date: Sun, 19 Nov 2023 18:32:16 +0100
Source: r-cran-openmx
Binary: r-cran-openmx r-cran-openmx-dbgsym
Architecture: armhf
Version: 2.21.10+dfsg-1
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-cran-openmx - GNU R extended structural equation modelling
Changes:
r-cran-openmx (2.21.10+dfsg-1) unstable; urgency=medium
.
* Add dependency from r-cran-matrix version it was built against
(see https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1055922#68)
* New upstream version
* dh-update-R to update Build-Depends (routine-update)
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Files:
da896ec8974e3b8b1fa3cd8f65bfbc99 6193532 debug optional r-cran-openmx-dbgsym_2.21.10+dfsg-1_armhf.deb
aed44a1e9c5a2464b58514a0d84b546e 10803 gnu-r optional r-cran-openmx_2.21.10+dfsg-1_armhf.buildinfo
c612fe9d8c215d64139167632e25c4ea 6510036 gnu-r optional r-cran-openmx_2.21.10+dfsg-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-openmx-dbgsym_2.21.10+dfsg-1_armhf.deb
---------------------------------------------
new Debian package, version 2.0.
size 6193532 bytes: control archive=544 bytes.
403 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-openmx-dbgsym
Source: r-cran-openmx
Version: 2.21.10+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 6574
Depends: r-cran-openmx (= 2.21.10+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for r-cran-openmx
Build-Ids: 022a2b09cd949db39793894bb82a488e218cf5a0
drwxr-xr-x root/root 0 2023-11-19 17:32 ./
drwxr-xr-x root/root 0 2023-11-19 17:32 ./usr/
drwxr-xr-x root/root 0 2023-11-19 17:32 ./usr/lib/
drwxr-xr-x root/root 0 2023-11-19 17:32 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-11-19 17:32 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-11-19 17:32 ./usr/lib/debug/.build-id/02/
-rw-r--r-- root/root 6721216 2023-11-19 17:32 ./usr/lib/debug/.build-id/02/2a2b09cd949db39793894bb82a488e218cf5a0.debug
drwxr-xr-x root/root 0 2023-11-19 17:32 ./usr/share/
drwxr-xr-x root/root 0 2023-11-19 17:32 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-11-19 17:32 ./usr/share/doc/r-cran-openmx-dbgsym -> r-cran-openmx
r-cran-openmx_2.21.10+dfsg-1_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 6510036 bytes: control archive=17440 bytes.
1568 bytes, 21 lines control
59680 bytes, 607 lines md5sums
Package: r-cran-openmx
Version: 2.21.10+dfsg-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 13713
Depends: r-api-4.0, r-base-core (>= 4.3.2), r-cran-digest, r-cran-mass, r-cran-matrix (>= 1.6-3-1), r-cran-rcpp, r-cran-rcppparallel, r-cran-lifecycle, r-cran-rcppeigen (>= 0.3.3.9.4), r-cran-stanheaders (>= 2.10.0.2), r-cran-bh (>= 1.69.0-1), r-cran-rpf (>= 0.45), libc6 (>= 2.29), libgcc-s1 (>= 4.0), libgomp1 (>= 6), libstdc++6 (>= 13.1), libtbb12 (>= 2021.9.0), python3
Recommends: r-cran-mvtnorm, r-cran-numderiv, r-cran-roxygen2 (>= 6.1), r-cran-snowfall, r-cran-lme4, r-cran-covr, r-cran-testthat, r-cran-knitr, r-cran-markdown, r-cran-rmarkdown, r-cran-reshape2, r-cran-ggplot2
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=OpenMx
Description: GNU R extended structural equation modelling
Create structural equation models that can be manipulated
programmatically. Models may be specified with matrices or paths (LISREL
or RAM) Example models include confirmatory factor, multiple group,
mixture distribution, categorical threshold, modern test theory,
differential Fit functions include full information maximum likelihood,
maximum likelihood, and weighted least squares. equations, state space,
and many others. Support and advanced package binaries available at
<http://openmx.ssri.psu.edu>. The software is described in Neale,
Hunter, Pritikin, Zahery, Brick, Kirkpatrick, Estabrook, Bates, Maes, &
Boker (2016) <doi:10.1007/s11336-014-9435-8>.
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 48160
Build-Time: 1910
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 1028
Job: r-cran-openmx_2.21.10+dfsg-1
Machine Architecture: armhf
Package: r-cran-openmx
Package-Time: 2961
Source-Version: 2.21.10+dfsg-1
Space: 48160
Status: successful
Version: 2.21.10+dfsg-1
--------------------------------------------------------------------------------
Finished at 2023-11-25T06:29:57Z
Build needed 00:49:21, 48160k disk space