r-cran-openmx →
2.20.7+dfsg-1 →
armhf → 2022-11-08 11:08:27
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| r-cran-openmx 2.20.7+dfsg-1 (armhf) Tue, 08 Nov 2022 10:00:26 +0000 |
+==============================================================================+
Package: r-cran-openmx
Version: 2.20.7+dfsg-1
Source Version: 2.20.7+dfsg-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-8e7eecf3-db30-40b3-a090-2fe67e65d58a' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.4 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.2 MB]
Fetched 27.7 MB in 10s (2870 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-openmx' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-openmx.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-openmx.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3822 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-cran-openmx 2.20.7+dfsg-1 (dsc) [2372 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-cran-openmx 2.20.7+dfsg-1 (tar) [3812 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-cran-openmx 2.20.7+dfsg-1 (diff) [7236 B]
Fetched 3822 kB in 0s (9577 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-openmx-s6sfz9/r-cran-openmx-2.20.7+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-openmx-s6sfz9' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-58MJla/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-58MJla/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-58MJla/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-58MJla/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-58MJla/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-58MJla/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-58MJla/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-58MJla/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (9223 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap libperl5.34 netbase perl-modules-5.34 sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 40 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-58MJla/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (69.2 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14774 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-digest, r-cran-mass, r-cran-matrix, r-cran-rcpp, r-cran-rcppparallel, r-cran-lifecycle, r-cran-rcppeigen, r-cran-stanheaders, r-cran-bh (>= 1.69.0-1), r-cran-rpf, libboost-system-dev, libsqlite3-dev, libzstd-dev
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-digest, r-cran-mass, r-cran-matrix, r-cran-rcpp, r-cran-rcppparallel, r-cran-lifecycle, r-cran-rcppeigen, r-cran-stanheaders, r-cran-bh (>= 1.69.0-1), r-cran-rpf, libboost-system-dev, libsqlite3-dev, libzstd-dev
dpkg-deb: building package 'sbuild-build-depends-r-cran-openmx-dummy' in '/<<BUILDDIR>>/resolver-58MJla/apt_archive/sbuild-build-depends-r-cran-openmx-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-cran-openmx-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-58MJla/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-58MJla/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-58MJla/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-58MJla/apt_archive ./ Sources [611 B]
Get:5 copy:/<<BUILDDIR>>/resolver-58MJla/apt_archive ./ Packages [686 B]
Fetched 2630 B in 0s (12.4 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-cran-openmx build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap libperl5.34 netbase perl-modules-5.34
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-12 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost-system-dev
libboost-system1.74-dev libboost-system1.74.0 libboost1.74-dev libbrotli1
libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-12-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libhwloc15 libice6 libicu-dev
libicu71 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
liblzma-dev liblzma5 libmagic-mgc libmagic1 libmd0
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-8-0
libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5
libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev
libreadline8 libregexp-ipv6-perl librtmp1 libsm6 libsqlite3-dev libssh2-1
libssl3 libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libtbb-dev libtbb12 libtbbbind-2-5
libtbbmalloc2 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl
libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl
libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 libzstd-dev
littler m4 man-db openssl pkg-config po-debconf r-base-core r-base-dev
r-cran-bh r-cran-cli r-cran-digest r-cran-glue r-cran-lattice
r-cran-lifecycle r-cran-littler r-cran-mass r-cran-matrix r-cran-mvtnorm
r-cran-pkgkitten r-cran-rcpp r-cran-rcppeigen r-cran-rcppparallel
r-cran-rlang r-cran-rpf r-cran-stanheaders readline-common ucf unzip
x11-common xauth xdg-utils xz-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-12-doc libcoarrays-dev groff liblapack-doc
libboost-doc libboost1.74-doc libboost-atomic1.74-dev
libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev
libboost-contract1.74-dev libboost-coroutine1.74-dev
libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-program-options1.74-dev libboost-python1.74-dev
libboost-random1.74-dev libboost-regex1.74-dev
libboost-serialization1.74-dev libboost-stacktrace1.74-dev
libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev
libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev
libmpfrc++-dev libntl-dev libboost-nowide1.74-dev low-memory-monitor icu-doc
liblzma-doc ncurses-doc libscalar-number-perl readline-doc sqlite3-doc
libtbb-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl
libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser
libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-cran-callr
r-cran-covr r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-processx
r-cran-ps r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-tibble
r-cran-whoami r-cran-crayon r-cran-dbi r-cran-dplyr r-cran-forcats
r-cran-ggplot2 r-cran-magrittr r-cran-r.utils r-cran-rsqlite r-cran-stringr
r-cran-waldo r-cran-withr r-cran-lintr r-cran-tidyverse r-cran-vctrs
r-cran-getopt r-cran-inline r-cran-fs r-cran-pillar r-cran-testthat
r-cran-usethis r-cran-roxygen2 r-cran-reshape2 r-cran-gridextra
r-cran-markdown r-cran-rstan
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl
libhwloc-plugins libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix
libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-testthat
r-cran-withr r-cran-mockery r-cran-vctrs r-cran-runit r-cran-rmarkdown
r-cran-numderiv libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-12 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost-system-dev
libboost-system1.74-dev libboost-system1.74.0 libboost1.74-dev libbrotli1
libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-12-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libhwloc15 libice6 libicu-dev
libicu71 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev libregexp-ipv6-perl librtmp1 libsm6 libsqlite3-dev libssh2-1
libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
libtbb-dev libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 libzstd-dev littler m4 man-db openssl pkg-config po-debconf
r-base-core r-base-dev r-cran-bh r-cran-cli r-cran-digest r-cran-glue
r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-mass r-cran-matrix
r-cran-mvtnorm r-cran-pkgkitten r-cran-rcpp r-cran-rcppeigen
r-cran-rcppparallel r-cran-rlang r-cran-rpf r-cran-stanheaders
sbuild-build-depends-r-cran-openmx-dummy ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
The following packages will be upgraded:
liblzma5 libpcre2-8-0 libreadline8 libssl3 readline-common xz-utils
6 upgraded, 198 newly installed, 0 to remove and 34 not upgraded.
Need to get 118 MB of archives.
After this operation, 463 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-58MJla/apt_archive ./ sbuild-build-depends-r-cran-openmx-dummy 0.invalid.0 [972 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf readline-common all 8.2-1.1 [68.4 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf liblzma5 armhf 5.2.7-0.1 [170 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-8-0 armhf 10.40-2 [222 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libreadline8 armhf 8.2-1.1 [141 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1.1 [78.2 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-3 [34.3 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.0-1 [1299 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libssl3 armhf 3.0.7-1 [1614 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.7-1 [1349 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-9 [171 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf xz-utils armhf 5.2.7-0.1 [328 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-9 [510 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.10.1 [79.9 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-9 [1220 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.10.1 [940 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-27 [152 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.38-2 [273 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.13.1-4.5 [281 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.5 [330 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.1-2 [308 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.1-2 [704 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-6 [496 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.50.0-1 [65.0 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.85.0-1 [325 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.1-1 [1214 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-3+rpi1 [238 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.5 [416 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 5.2.0-2 [1835 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.10+ds-1 [214 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.10+ds-1 [68.6 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.10+ds-1 [58.3 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-5 [277 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.2.1-3 [27.7 MB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-12-dev armhf 12.2.0-3+rpi1 [285 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf gfortran-12 armhf 12.2.0-3+rpi1 [7509 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:12.2.0-1+rpi1 [1432 B]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-2 [114 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.1-2 [2847 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3+20220423-2 [289 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3+20220423-2 [940 B]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.2-1.1 [123 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.40-2 [208 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.40-2 [199 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.40-2 [53.2 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.40-2 [644 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-14 [239 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-14 [232 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-14 [150 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-14 [569 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.38-2 [352 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.7-0.1 [228 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 71.1-3 [177 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 71.1-3 [9799 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1.1-1 [36.9 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.2.1-3 [4484 B]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.16-1 [90.3 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.41-1 [81.1 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-3 [9724 B]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b4 [15.4 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-3 [7080 B]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.15-1 [12.6 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-2 [12.0 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-2+b1 [12.2 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-2 [16.8 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2200-1+b2 [794 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-2+b1 [10.9 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.85.0-1 [320 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-8+b1 [55.9 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-17 [9534 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b4 [4824 B]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libboost-system1.74.0 armhf 1.74.0-17 [242 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf libboost-system1.74-dev armhf 1.74.0-17 [244 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf libboost-system-dev armhf 1.74.0.3+b4 [4744 B]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf libhwloc15 armhf 2.8.0-1 [130 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf libsqlite3-dev armhf 3.39.4-1 [898 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf libtbbmalloc2 armhf 2021.7.0-1+rpi1 [39.5 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf libtbbbind-2-5 armhf 2021.7.0-1+rpi1 [12.3 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf libtbb12 armhf 2021.7.0-1+rpi1 [65.6 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf libtbb-dev armhf 2021.7.0-1+rpi1 [191 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf libzstd-dev armhf 1.5.2+dfsg-1 [289 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf r-cran-littler armhf 0.3.17-1 [92.5 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf littler all 0.3.17-1 [14.4 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bh all 1.74.0-2 [5524 B]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cli armhf 3.4.1-1 [1242 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf r-cran-digest armhf 0.6.30-2 [177 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-45-3 [1176 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rlang armhf 1.0.6-1 [1621 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mass armhf 7.3-58.1-1 [1126 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.5-1-1 [3685 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mvtnorm armhf 1.1-3-1 [219 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcpp armhf 1.0.9-1 [2036 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcppeigen armhf 0.3.3.9.2-1 [1167 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcppparallel armhf 5.1.5+dfsg-3 [301 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rpf armhf 1.0.11+dfsg-1 [620 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf r-cran-stanheaders armhf 2.21.0-7-2 [784 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking libpcre2-8-0:armhf (10.40-2) over (10.40-1+b2) ...
Setting up libpcre2-8-0:armhf (10.40-2) ...
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invoke-rc.d: could not determine current runlevel
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Setting up libboost-system-dev:armhf (1.74.0.3+b4) ...
Setting up libpng-dev:armhf (1.6.38-2) ...
Setting up libjpeg-dev:armhf (1:2.1.2-1) ...
Setting up libcurl3-gnutls:armhf (7.85.0-1) ...
Setting up libgfortran-12-dev:armhf (12.2.0-3+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up libclass-c3-perl (0.35-1) ...
Setting up libreadline-dev:armhf (8.2-1.1) ...
Setting up libdevel-callchecker-perl (0.008-1+b4) ...
Setting up libtbbbind-2-5:armhf (2021.7.0-1+rpi1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
Setting up gfortran-12 (12.2.0-3+rpi1) ...
Setting up libfreetype6:armhf (2.12.1+dfsg-3) ...
Setting up liblapack-dev:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.112-1) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up dwz (0.14+20220924-2) ...
Setting up groff-base (1.22.4-8) ...
Setting up libncurses5-dev:armhf (6.3+20220423-2) ...
Setting up libcurl4:armhf (7.85.0-1) ...
Setting up libx11-6:armhf (2:1.8.1-2) ...
Setting up libharfbuzz0b:armhf (5.2.0-2) ...
Setting up libmro-compat-perl (0.15-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.988-1) ...
Setting up libhttp-message-perl (6.41-1) ...
Setting up libeval-closure-perl (0.14-2) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-8+b1) ...
Setting up libtbb12:armhf (2021.7.0-1+rpi1) ...
Setting up man-db (2.11.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:12.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1) ...
Setting up xauth (1:1.1.1-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libtbb-dev:armhf (2021.7.0-1+rpi1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up debhelper (13.10.1) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up libpackage-deprecationmanager-perl (0.17-2) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up libmoose-perl:armhf (2.2200-1+b2) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Processing triggers for libc-bin (2.35-2+rpi1) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.13.1-4.5) ...
Setting up fontconfig (2.13.1-4.5) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.12-1) ...
Setting up libpango-1.0-0:armhf (1.50.10+ds-1) ...
Setting up libcairo2:armhf (1.16.0-6) ...
Setting up libpangoft2-1.0-0:armhf (1.50.10+ds-1) ...
Setting up libpangocairo-1.0-0:armhf (1.50.10+ds-1) ...
Setting up r-base-core (4.2.1-3) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-lattice (0.20-45-3) ...
Setting up r-cran-pkgkitten (0.2.2-2) ...
Setting up r-cran-rcppparallel (5.1.5+dfsg-3) ...
Setting up r-cran-littler (0.3.17-1) ...
Setting up r-cran-rcpp (1.0.9-1) ...
Setting up r-cran-rlang (1.0.6-1) ...
Setting up r-base-dev (4.2.1-3) ...
Setting up littler (0.3.17-1) ...
Setting up r-cran-digest (0.6.30-2) ...
Setting up r-cran-mass (7.3-58.1-1) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-cli (3.4.1-1) ...
Setting up r-cran-lifecycle (1.0.3+dfsg-1) ...
Setting up r-cran-mvtnorm (1.1-3-1) ...
Setting up r-cran-matrix (1.5-1-1) ...
Setting up dh-r (20210816) ...
Setting up r-cran-rcppeigen (0.3.3.9.2-1) ...
Setting up r-cran-stanheaders (2.21.0-7-2) ...
Setting up r-cran-rpf (1.0.11+dfsg-1) ...
Setting up sbuild-build-depends-r-cran-openmx-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.35-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-3+rpi1 gcc-12_12.2.0-3+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 bsdextrautils_2.38.1-1.1 bsdutils_1:2.38.1-1.1 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-3+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 dctrl-tools_2.24-3 debconf_1.5.79 debhelper_13.10.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig_2.13.1-4.5 fontconfig-config_2.13.1-4.5 fonts-dejavu-core_2.37-2 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-3+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-3+rpi1 gcc-12-base_12.2.0-3+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-9 gettext-base_0.21-9 gfortran_4:12.2.0-1+rpi1 gfortran-12_12.2.0-3+rpi1 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 icu-devtools_71.1-3 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.5.3 libarchive-zip-perl_1.68-1 libasan8_12.2.0-3+rpi1 libassuan0_2.5.5-4 libatomic1_12.2.0-3+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.39-6+rpi1 libblas-dev_3.10.1-2 libblas3_3.10.1-2 libblkid1_2.38.1-1.1 libboost-dev_1.74.0.3+b4 libboost-system-dev_1.74.0.3+b4 libboost-system1.74-dev_1.74.0-17 libboost-system1.74.0_1.74.0-17 libboost1.74-dev_1.74.0-17 libbrotli1_1.0.9-2+b2 libbsd0_0.11.7-1 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.35-2+rpi1 libc-dev-bin_2.35-2+rpi1 libc6_2.35-2+rpi1 libc6-dev_2.35-2+rpi1 libcairo2_1.16.0-6 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-3+rpi1 libclass-c3-perl_0.35-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-2+b1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-6+rpi1 libctf0_2.39-6+rpi1 libcurl3-gnutls_7.85.0-1 libcurl4_7.85.0-1 libdata-optlist-perl_0.112-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.10.1 libdeflate0_1.14-1 libdevel-callchecker-perl_0.008-1+b4 libdevel-globaldestruction-perl_0.14-3 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-1 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.21.9+rpi1 libdynaloader-functions-perl_0.003-3 libelf1_0.187-2+rpi2 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-2 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-2 libfontconfig1_2.13.1-4.5 libfreetype6_2.12.1+dfsg-3 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.2.0-3+rpi1 libgcc-s1_12.2.0-3+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran-12-dev_12.2.0-3+rpi1 libgfortran5_12.2.0-3+rpi1 libglib2.0-0_2.74.1-1 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-2 libgomp1_12.2.0-3+rpi1 libgpg-error0_1.45-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20-1 libharfbuzz0b_5.2.0-2 libhogweed6_3.8.1-2 libhttp-date-perl_6.05-2 libhttp-message-perl_6.41-1 libhwloc15_2.8.0-1 libice6_2:1.0.10-1 libicu-dev_71.1-3 libicu71_71.1-3 libidn2-0_2.3.3-1 libio-html-perl_1.004-3 libisl23_0.25-1 libjbig0_2.1-3.1+b2 libjpeg-dev_1:2.1.2-1 libjpeg62-turbo_1:2.1.2-1 libjpeg62-turbo-dev_1:2.1.2-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 liblapack-dev_3.10.1-2 liblapack3_3.10.1-2 libldap-2.5-0_2.5.13+dfsg-2+rpi1 liblerc4_4.0.0+ds-2 liblwp-mediatypes-perl_6.04-1 liblz4-1_1.9.4-1+rpi1 liblzma-dev_5.2.7-0.1 liblzma5_5.2.7-0.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmodule-implementation-perl_0.09-2 libmodule-runtime-conflicts-perl_0.003-2 libmodule-runtime-perl_0.016-2 libmoose-perl_2.2200-1+b2 libmount1_2.38.1-1.1 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libmro-compat-perl_0.15-1 libnamespace-clean-perl_0.27-2 libncurses-dev_6.3+20220423-2 libncurses5-dev_6.3+20220423-2 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpackage-deprecationmanager-perl_0.17-2 libpackage-stash-perl_0.40-1 libpackage-stash-xs-perl_0.30-1+b1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpango-1.0-0_1.50.10+ds-1 libpangocairo-1.0-0_1.50.10+ds-1 libpangoft2-1.0-0_1.50.10+ds-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libparams-classify-perl_0.015-2+b1 libparams-util-perl_1.102-2+b1 libpcre16-3_2:8.39-14 libpcre2-16-0_10.40-2 libpcre2-32-0_10.40-2 libpcre2-8-0_10.40-2 libpcre2-dev_10.40-2 libpcre2-posix3_10.40-2 libpcre3_2:8.39-14 libpcre3-dev_2:8.39-14 libpcre32-3_2:8.39-14 libpcrecpp0v5_2:8.39-14 libperl5.34_5.34.0-5 libperl5.36_5.36.0-4 libpipeline1_1.5.6-3 libpixman-1-0_0.40.0-1 libpng-dev_1.6.38-2 libpng16-16_1.6.38-2 libpsl5_0.21.0-1.2 libreadline-dev_8.2-1.1 libreadline8_8.2-1.1 libregexp-ipv6-perl_0.03-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsm6_2:1.2.3-1 libsmartcols1_2.38.1-1.1 libsqlite3-0_3.39.4-1 libsqlite3-dev_3.39.4-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.7-1 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 libsub-exporter-perl_0.988-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-2+b1 libsub-install-perl_0.928-3 libsub-name-perl_0.26-2+b1 libsub-override-perl_0.09-4 libswitch-perl_2.17-3 libsystemd0_251.5-1+rpi1 libtasn1-6_4.19.0-2 libtbb-dev_2021.7.0-1+rpi1 libtbb12_2021.7.0-1+rpi1 libtbbbind-2-5_2021.7.0-1+rpi1 libtbbmalloc2_2021.7.0-1+rpi1 libtcl8.6_8.6.12+dfsg-1 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff5_4.4.0-5 libtimedate-perl_2.3300-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.12-1 libtool_2.4.7-4 libtry-tiny-perl_0.31-2 libubsan1_12.2.0-3+rpi1 libuchardet0_0.0.7-1 libudev1_251.5-1+rpi1 libunistring2_1.0-2 liburi-perl_5.16-1 libuuid1_2.38.1-1.1 libvariable-magic-perl_0.63-1+b1 libwebp7_1.2.2-2 libwww-curl-perl_4.17-8+b1 libwww-curl-simple-perl_0.100191-3 libx11-6_2:1.8.1-2 libx11-data_2:1.8.1-2 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1 libxxhash0_0.8.1-1 libzstd-dev_1.5.2+dfsg-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 littler_0.3.17-1 login_1:4.12.3+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.0-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-1.1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 openssl_3.0.7-1 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 pinentry-curses_1.2.0-2 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 r-base-core_4.2.1-3 r-base-dev_4.2.1-3 r-cran-bh_1.74.0-2 r-cran-cli_3.4.1-1 r-cran-digest_0.6.30-2 r-cran-glue_1.6.2-1 r-cran-lattice_0.20-45-3 r-cran-lifecycle_1.0.3+dfsg-1 r-cran-littler_0.3.17-1 r-cran-mass_7.3-58.1-1 r-cran-matrix_1.5-1-1 r-cran-mvtnorm_1.1-3-1 r-cran-pkgkitten_0.2.2-2 r-cran-rcpp_1.0.9-1 r-cran-rcppeigen_0.3.3.9.2-1 r-cran-rcppparallel_5.1.5+dfsg-3 r-cran-rlang_1.0.6-1 r-cran-rpf_1.0.11+dfsg-1 r-cran-stanheaders_2.21.0-7-2 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-openmx-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tzdata_2022d-1 ucf_3.0043 unzip_6.0-27 util-linux_2.38.1-1.1 util-linux-extra_2.38.1-1.1 x11-common_1:7.7+23 xauth_1:1.1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.7-0.1 zip_3.0-12 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.65UsoKU6/trustedkeys.kbx': General error
gpgv: Signature made Sun Oct 23 14:09:12 2022 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "nilesh@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./r-cran-openmx_2.20.7+dfsg-1.dsc
dpkg-source: info: extracting r-cran-openmx in /<<BUILDDIR>>/r-cran-openmx-2.20.7+dfsg
dpkg-source: info: unpacking r-cran-openmx_2.20.7+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-cran-openmx_2.20.7+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying use_debian_packaged_libs.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-8e7eecf3-db30-40b3-a090-2fe67e65d58a
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-cran-openmx
dpkg-buildpackage: info: source version 2.20.7+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-cran-openmx/ -a -O--buildsystem=R
I: R packages needed for DEP8: testthat, numderiv
I: R Package: OpenMx Version: 2.20.7
I: Building using R version 4.2.1-3
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Sun, 23 Oct 2022 19:28:36 +0530
mkdir -p /<<BUILDDIR>>/r-cran-openmx-2.20.7\+dfsg/debian/r-cran-openmx/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-cran-openmx-2.20.7\+dfsg/debian/r-cran-openmx/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 23 Oct 2022 19:28:36 +0530'"
* installing *source* package 'OpenMx' ...
files 'inst/doc/factor_analysis.html', 'inst/doc/regularization.html' are missing
files 'inst/tools/mxAlgebraParser.py', 'inst/tools/mxParser.py', 'inst/tools/sphinxToR.py', 'src/Makevars.in' have the wrong MD5 checksums
** using staged installation
NOTE: ./configure is not an autoconf generated script.
Change default C/C++ compiler and default compile flags by editing ~/.R/Makevars
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-openmx-2.20.7+dfsg/src'
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Compute.cpp -o Compute.o
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from Compute.cpp:17:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ComputeGD.cpp -o ComputeGD.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ComputeNM.cpp -o ComputeNM.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ComputeNR.cpp -o ComputeNR.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ComputeSD.cpp -o ComputeSD.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c FellnerFitFunction.cpp -o FellnerFitFunction.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MarkovExpectation.cpp -o MarkovExpectation.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MarkovFF.cpp -o MarkovFF.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c asa.c -o asa.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c asubnp.cpp -o asubnp.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ba81quad.cpp -o ba81quad.o
In file included from /usr/include/c++/12/vector:70,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from ba81quad.h:21,
from ba81quad.cpp:18:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >]' at ba81quad.h:1112:21:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >]' at ba81quad.h:1148:25:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Map<Eigen::Matrix<double, -1, -1>, 0, Eigen::Stride<0, 0> >; T2 = Eigen::Map<Eigen::Matrix<double, -1, 1>, 0, Eigen::Stride<0, 0> >]' at ba81quad.h:1158:21:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dmvnorm.cpp -o dmvnorm.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fitMultigroup.cpp -o fitMultigroup.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c general.c -o general.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c glue.cpp -o glue.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c matlogexp.cpp -o matlogexp.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c matrix.cpp -o matrix.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -c mvbvn.f -o mvbvn.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nanotimer.cpp -o nanotimer.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxAlgebra.cpp -o omxAlgebra.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxAlgebraFitFunction.cpp -o omxAlgebraFitFunction.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxData.cpp -o omxData.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxExpectation.cpp -o omxExpectation.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxExpectationBA81.cpp -o omxExpectationBA81.o
In file included from /usr/include/c++/12/vector:70,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from omxExpectation.h:32,
from omxExpectationBA81.h:20,
from omxExpectationBA81.cpp:20:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<double, -1, 1>]' at ba81quad.h:1112:21:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<double, -1, 1>]' at ba81quad.h:1148:25:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void ba81NormalQuad::layer::refresh(Eigen::MatrixBase<U>&, Eigen::MatrixBase<Derived>&) [with T1 = Eigen::Matrix<double, -1, -1>; T2 = Eigen::Matrix<double, -1, 1>]' at ba81quad.h:1158:21:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxExportBackendState.cpp -o omxExportBackendState.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxFIMLFitFunction.cpp -o omxFIMLFitFunction.o
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:64,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from omxFIMLFitFunction.cpp:18:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'nanotime_t omxFIMLFitFunction::getMedianElapsedTime()' at omxFIMLFitFunction.cpp:27:11:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'nanotime_t omxFIMLFitFunction::getMedianElapsedTime()' at omxFIMLFitFunction.cpp:27:11:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'virtual void omxFIMLFitFunction::compute2(int, FitContext*)' at omxFIMLFitFunction.cpp:945:25:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxFitFunction.cpp -o omxFitFunction.o
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:64,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from omxFitFunction.h:33,
from omxFitFunction.cpp:31:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxFitFunctionBA81.cpp -o omxFitFunctionBA81.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxGREMLExpectation.cpp -o omxGREMLExpectation.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxGREMLfitfunction.cpp -o omxGREMLfitfunction.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxHessianCalculation.cpp -o omxHessianCalculation.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxImportFrontendState.cpp -o omxImportFrontendState.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxLISRELExpectation.cpp -o omxLISRELExpectation.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxMLFitFunction.cpp -o omxMLFitFunction.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxMatrix.cpp -o omxMatrix.o
In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/SVD:38,
from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:5,
from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
from /usr/lib/R/site-library/StanHeaders/include/stan/math/version.hpp:4,
from omxDefines.h:234,
from omxMatrix.h:36,
from omxMatrix.cpp:28:
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h: In member function 'void Eigen::BDCSVD<MatrixType>::structured_update(Eigen::Block<Eigen::Matrix<typename Eigen::NumTraits<typename Derived::Scalar>::Real, -1, -1, 0>, -1, -1>, const MatrixXr&, Eigen::Index) [with _MatrixType = Eigen::Matrix<double, -1, -1>]':
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:340:6: note: parameter passing for argument of type 'Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>' changed in GCC 7.1
340 | void BDCSVD<MatrixType>::structured_update(Block<MatrixXr,Dynamic,Dynamic> A, const MatrixXr &B, Index n1)
| ^~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h: In member function 'void Eigen::BDCSVD<MatrixType>::divide(Eigen::Index, Eigen::Index, Eigen::Index, Eigen::Index, Eigen::Index) [with _MatrixType = Eigen::Matrix<double, -1, -1>]':
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:542:22: note: parameter passing for argument of type 'Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>' changed in GCC 7.1
542 | structured_update(m_naiveU.block(firstCol, firstCol, n + 1, n + 1), UofSVD, (n+2)/2);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:542:22: note: parameter passing for argument of type 'Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>' changed in GCC 7.1
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:550:34: note: parameter passing for argument of type 'Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>' changed in GCC 7.1
550 | if (m_compV) structured_update(m_naiveV.block(firstRowW, firstColW, n, n), VofSVD, (n+1)/2);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/SVD/BDCSVD.h:550:34: note: parameter passing for argument of type 'Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>' changed in GCC 7.1
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxNLopt.cpp -o omxNLopt.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxNPSOLSpecific.cpp -o omxNPSOLSpecific.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxNormalExpectation.cpp -o omxNormalExpectation.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxRAMExpectation.cpp -o omxRAMExpectation.o
In file included from /usr/include/c++/12/vector:70,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from omxExpectation.h:32,
from omxRAMExpectation.cpp:17:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const RelationalRAMExpectation::addr&}; _Tp = RelationalRAMExpectation::addr; _Alloc = std::allocator<RelationalRAMExpectation::addr>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<RelationalRAMExpectation::addr>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = RelationalRAMExpectation::addr; _Alloc = std::allocator<RelationalRAMExpectation::addr>]',
inlined from 'int RelationalRAMExpectation::state::flattenOneRow(omxExpectation*, int, int&)' at omxRAMExpectation.cpp:1024:19:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<RelationalRAMExpectation::addr*, std::vector<RelationalRAMExpectation::addr> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxRFitFunction.cpp -o omxRFitFunction.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxRowFitFunction.cpp -o omxRowFitFunction.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxState.cpp -o omxState.o
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:64,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from omxState.h:31,
from omxState.cpp:22:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:48:14:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void AutoTune<T>::finish() [with T = JacobianGadget]' at autoTune.h:49:14:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxStateSpaceExpectation.cpp -o omxStateSpaceExpectation.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxSymbolTable.cpp -o omxSymbolTable.o
In file included from /usr/include/c++/12/vector:70,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:60,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from omxDefines.h:21,
from omxMatrix.h:36,
from omxSymbolTable.h:4,
from omxSymbolTable.cpp:1:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void orderByNorm(const T&, std::vector<int>&) [with T = Eigen::Matrix<std::complex<double>, -1, 1>]' at AlgebraFunctions.h:2209:16:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c omxWLSFitFunction.cpp -o omxWLSFitFunction.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c optimize.c -o optimize.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c options.c -o options.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c penalty.cpp -o penalty.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c povRAM.cpp -o povRAM.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -c sadmvn.f -o sadmvn.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c slsqp.c -o slsqp.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -fopenmp -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ssMLFit.cpp -o ssMLFit.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppParallel/include' -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/rpf/include' -DSTRICT_R_HEADERS -fpic -g -O2 -ffile-prefix-map=/build/r-base-qZ82JU/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c stop.c -o stop.o
g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-z,relro -o OpenMx.so Compute.o ComputeGD.o ComputeNM.o ComputeNR.o ComputeSD.o FellnerFitFunction.o MarkovExpectation.o MarkovFF.o asa.o asubnp.o ba81quad.o dmvnorm.o fitMultigroup.o general.o glue.o matlogexp.o matrix.o mvbvn.o nanotimer.o omxAlgebra.o omxAlgebraFitFunction.o omxData.o omxExpectation.o omxExpectationBA81.o omxExportBackendState.o omxFIMLFitFunction.o omxFitFunction.o omxFitFunctionBA81.o omxGREMLExpectation.o omxGREMLfitfunction.o omxHessianCalculation.o omxImportFrontendState.o omxLISRELExpectation.o omxMLFitFunction.o omxMatrix.o omxNLopt.o omxNPSOLSpecific.o omxNormalExpectation.o omxRAMExpectation.o omxRFitFunction.o omxRowFitFunction.o omxState.o omxStateSpaceExpectation.o omxSymbolTable.o omxWLSFitFunction.o optimize.o options.o penalty.o povRAM.o sadmvn.o slsqp.o ssMLFit.o stop.o -fopenmp -llapack -lblas -lboost_system -lsqlite3 -lgfortran -lm -lgfortran -lm -L/usr/lib/R/lib -lR
mkdir -p ../inst/debug
cp *.gcno ../inst/debug/
cp: cannot stat '*.gcno': No such file or directory
make[1]: [Makevars:93: save-gcno] Error 1 (ignored)
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-openmx-2.20.7+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-openmx-2.20.7+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-openmx-2.20.7+dfsg/src'
installing to /<<BUILDDIR>>/r-cran-openmx-2.20.7+dfsg/debian/r-cran-openmx/usr/lib/R/site-library/00LOCK-r-cran-openmx-2.20.7+dfsg/00new/OpenMx/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'nrow' from package 'base' in package 'OpenMx'
Creating a generic function for 'ncol' from package 'base' in package 'OpenMx'
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (OpenMx)
W: Ignoring specified R dependency: R (>= 3.5.0)
I: Using r-cran-testthat for Recommends:testthat
I: Using r-cran-numderiv for Recommends:numderiv
I: Using r-cran-mvtnorm for Suggests:mvtnorm
I: Using r-cran-roxygen2 for Suggests:roxygen2 (>= 6.1)
I: Using r-cran-rpf for Suggests:rpf (>= 0.45)
I: Using r-cran-snowfall for Suggests:snowfall
I: Using r-cran-lme4 for Suggests:lme4
I: Using r-cran-covr for Suggests:covr
W: Cannot find a debian package for Suggests:umx
W: Cannot find a debian package for Suggests:ifaTools
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-markdown for Suggests:markdown
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-reshape2 for Suggests:reshape2
I: Using r-cran-ggplot2 for Suggests:ggplot2
I: Using r-cran-digest for Imports:digest
I: Using r-cran-mass for Imports:MASS
I: Using r-cran-matrix for Imports:Matrix
I: Using r-cran-rcpp for Imports:Rcpp
I: Using r-cran-rcppparallel for Imports:RcppParallel
I: Using r-cran-lifecycle for Imports:lifecycle
I: Using r-cran-rcpp for LinkingTo:Rcpp
I: Using r-cran-rcppeigen for LinkingTo:RcppEigen
I: Using r-cran-rcppparallel for LinkingTo:RcppParallel
I: Using r-cran-stanheaders for LinkingTo:StanHeaders (>= 2.10.0.2)
I: Using r-cran-bh for LinkingTo:BH (>= 1.69.0-1)
I: Using r-cran-rpf for LinkingTo:rpf (>= 0.45)
I: Use r-cran-openmx as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-openmx-2.20.7+dfsg'
dh_fixperms
find debian \( -name "*.R" -o -name "*.txt" \) -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-openmx-2.20.7+dfsg'
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-openmx-dbgsym' in '../r-cran-openmx-dbgsym_2.20.7+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-cran-openmx' in '../r-cran-openmx_2.20.7+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-cran-openmx_2.20.7+dfsg-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../r-cran-openmx_2.20.7+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-11-08T11:08:19Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-openmx_2.20.7+dfsg-1_armhf.changes:
------------------------------------------
Format: 1.8
Date: Sun, 23 Oct 2022 19:28:36 +0530
Source: r-cran-openmx
Binary: r-cran-openmx r-cran-openmx-dbgsym
Architecture: armhf
Version: 2.20.7+dfsg-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
r-cran-openmx - GNU R extended structural equation modelling
Changes:
r-cran-openmx (2.20.7+dfsg-1) unstable; urgency=medium
.
* Team Upload.
* New upstream version 2.20.7+dfsg
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Files:
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-openmx-dbgsym_2.20.7+dfsg-1_armhf.deb
--------------------------------------------
new Debian package, version 2.0.
size 64741992 bytes: control archive=540 bytes.
402 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-openmx-dbgsym
Source: r-cran-openmx
Version: 2.20.7+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 63987
Depends: r-cran-openmx (= 2.20.7+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for r-cran-openmx
Build-Ids: 39e8e372d6055f66d0256d492470c13cbe2ad63f
drwxr-xr-x root/root 0 2022-10-23 13:58 ./
drwxr-xr-x root/root 0 2022-10-23 13:58 ./usr/
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lrwxrwxrwx root/root 0 2022-10-23 13:58 ./usr/share/doc/r-cran-openmx-dbgsym -> r-cran-openmx
r-cran-openmx_2.20.7+dfsg-1_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 5972932 bytes: control archive=17316 bytes.
1524 bytes, 22 lines control
59318 bytes, 603 lines md5sums
Package: r-cran-openmx
Version: 2.20.7+dfsg-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 13003
Depends: r-base-core (>= 4.2.1-3), r-api-4.0, r-cran-digest, r-cran-mass, r-cran-matrix, r-cran-rcpp, r-cran-rcppparallel, r-cran-lifecycle, r-cran-rcppeigen, r-cran-stanheaders (>= 2.10.0.2), r-cran-bh (>= 1.69.0-1), r-cran-rpf (>= 0.45), libc6 (>= 2.29), libgcc-s1 (>= 4.0), libgomp1 (>= 6), libstdc++6 (>= 12), python3
Recommends: r-cran-testthat, r-cran-numderiv
Suggests: r-cran-mvtnorm, r-cran-roxygen2 (>= 6.1), r-cran-snowfall, r-cran-lme4, r-cran-covr, r-cran-knitr, r-cran-markdown, r-cran-rmarkdown, r-cran-reshape2, r-cran-ggplot2
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=OpenMx
Description: GNU R extended structural equation modelling
Create structural equation models that can be manipulated
programmatically. Models may be specified with matrices or paths (LISREL
or RAM) Example models include confirmatory factor, multiple group,
mixture distribution, categorical threshold, modern test theory,
differential Fit functions include full information maximum likelihood,
maximum likelihood, and weighted least squares. equations, state space,
and many others. Support and advanced package binaries available at
<http://openmx.ssri.psu.edu>. The software is described in Neale,
Hunter, Pritikin, Zahery, Brick, Kirkpatrick, Estabrook, Bates, Maes, &
Boker (2016) <doi:10.1007/s11336-014-9435-8>.
drwxr-xr-x root/root 0 2022-10-23 13:58 ./
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-rw-r--r-- root/root 20843 2022-10-23 13:58 ./usr/lib/R/site-library/OpenMx/INDEX
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
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+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 161372
Build-Time: 3116
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 938
Job: r-cran-openmx_2.20.7+dfsg-1
Machine Architecture: armhf
Package: r-cran-openmx
Package-Time: 4073
Source-Version: 2.20.7+dfsg-1
Space: 161372
Status: successful
Version: 2.20.7+dfsg-1
--------------------------------------------------------------------------------
Finished at 2022-11-08T11:08:19Z
Build needed 01:07:53, 161372k disk space