r-cran-msm →
1.1.4-1 →
armhf → 2013-06-04 09:47:51
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on debian-armhf
╔══════════════════════════════════════════════════════════════════════════════╗
║ r-cran-msm 1.1.4-1 (armhf) 04 Jun 2013 09:39 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-cran-msm
Version: 1.1.4-1
Source Version: 1.1.4-1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/r-cran-msm-sMxlEz/r-cran-msm-1.1.4' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/r-cran-msm-sMxlEz' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-8b7163b7-2f96-492a-8a9d-fd9d545cb635' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging Release.gpg [490 B]
Get:2 http://172.17.0.1 jessie-staging Release [10.8 kB]
Get:3 http://172.17.0.1 jessie-staging/main Sources [6585 kB]
Get:4 http://172.17.0.1 jessie-staging/main armhf Packages [7597 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
Fetched 14.2 MB in 47s (299 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-cran-msm' packaging is maintained in the 'Svn' version control system at:
svn://svn.debian.org/debian-science/packages/R/r-cran-msm/trunk/
Need to get 694 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main r-cran-msm 1.1.4-1 (dsc) [1410 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main r-cran-msm 1.1.4-1 (tar) [690 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main r-cran-msm 1.1.4-1 (diff) [2962 B]
Fetched 694 kB in 1s (425 kB/s)
Download complete and in download only mode
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-F9aH3A/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 43 not upgraded.
Need to get 0 B/702 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11288 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 3.0.0), r-cran-mvtnorm, r-cran-survival
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 3.0.0), r-cran-mvtnorm, r-cran-survival
dpkg-deb: building package `sbuild-build-depends-r-cran-msm-dummy' in `/«BUILDDIR»/resolver-BXUQnO/apt_archive/sbuild-build-depends-r-cran-msm-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-cran-msm build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils cdbs debhelper file fontconfig fontconfig-config
fonts-dejavu-core gcc-4.8-base gettext gettext-base gfortran gfortran-4.6
groff-base html2text intltool-debian libasprintf-dev libasprintf0c2
libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libffi6 libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0
libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev
liblapack-dev liblapack3 libmagic1 libncurses5 libncurses5-dev libncursesw5
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev
libreadline6-dev libsm6 libthai-data libthai0 libtiff5 libtinfo-dev
libtinfo5 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1
libxt6 man-db ncurses-bin po-debconf r-base-core r-base-dev r-cran-mvtnorm
r-cran-survival tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils
zip zlib1g zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts dh-make gettext-doc
gfortran-doc gfortran-4.6-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
texi2html tcl-tclreadline gvfs-bin
Recommended packages:
autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
libgpm2 xml-core libmail-sendmail-perl r-recommended r-doc-html xterm
x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper file fontconfig fontconfig-config
fonts-dejavu-core gcc-4.8-base gettext gettext-base gfortran gfortran-4.6
groff-base html2text intltool-debian libasprintf-dev libasprintf0c2
libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libffi6 libfontconfig1 libfreetype6 libgettextpo-dev libgettextpo0
libgfortran3 libglib2.0-0 libice6 libjbig0 libjpeg8 libjpeg8-dev
liblapack-dev liblapack3 libmagic1 libncurses5-dev libpango1.0-0
libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0 libpipeline1
libpixman-1-0 libpng12-0 libpng12-dev libreadline-dev libreadline6-dev
libsm6 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxml2 libxrender1 libxss1 libxt6 man-db po-debconf r-base-core
r-base-dev r-cran-mvtnorm r-cran-survival
sbuild-build-depends-r-cran-msm-dummy tcl8.5 tk8.5 ttf-dejavu-core ucf unzip
x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
libncurses5 libncursesw5 libtinfo5 ncurses-bin zlib1g
5 upgraded, 86 newly installed, 0 to remove and 38 not upgraded.
Need to get 57.9 MB/57.9 MB of archives.
After this operation, 113 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libncursesw5 armhf 5.9+20130504-1 [122 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main libtinfo5 armhf 5.9+20130504-1 [284 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main libncurses5 armhf 5.9+20130504-1 [95.6 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main ncurses-bin armhf 5.9+20130504-1 [357 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main zlib1g armhf 1:1.2.8.dfsg-1 [88.8 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libpcre3 armhf 1:8.31-2 [248 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.2.3-1 [35.8 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-2 [666 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.3-6 [867 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.1.1-10 [26.8 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.14-2 [213 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.8.0+dfsg1-7+nmu1 [822 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-3 [117 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main libfreetype6 armhf 2.4.9-1.1 [401 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main ucf all 3.0025+nmu3 [70.8 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main fonts-dejavu-core all 2.33+svn2514-3 [1042 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main ttf-dejavu-core all 2.33+svn2514-3 [29.8 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main fontconfig-config all 2.9.0-7.1 [233 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main libfontconfig1 armhf 2.9.0-7.1 [285 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main libpixman-1-0 armhf 0.26.0-4 [413 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main libpng12-0 armhf 1.2.49-4 [179 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main libxau6 armhf 1:1.0.7-1 [17.6 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main libxdmcp6 armhf 1:1.1.1-1 [24.6 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main libxcb1 armhf 1.8.1-2 [42.7 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main libx11-data all 2:1.5.0-1 [189 kB]
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Get:28 http://172.17.0.1/private/ jessie-staging/main libxcb-render0 armhf 1.8.1-2 [16.3 kB]
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Get:30 http://172.17.0.1/private/ jessie-staging/main libxext6 armhf 2:1.3.1-2 [49.7 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main libxrender1 armhf 1:0.9.7-1 [29.9 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main libcairo2 armhf 1.12.14-4 [936 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.0.13-4 [19.8 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.36.1-2build1 [1895 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.6-2 [119 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main libdatrie1 armhf 0.2.6-2 [27.0 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main libgettextpo0 armhf 0.18.1.1-10 [131 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main gcc-4.8-base armhf 4.8.0-7+rpi1 [148 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main libgfortran3 armhf 4.8.0-7+rpi1 [229 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main x11-common all 1:7.7+3 [284 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main libice6 armhf 2:1.0.8-2 [56.2 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main libjpeg8 armhf 8d-1 [132 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main libthai-data all 0.1.19-2 [156 kB]
Get:45 http://172.17.0.1/private/ jessie-staging/main libthai0 armhf 0.1.19-2 [40.5 kB]
Get:46 http://172.17.0.1/private/ jessie-staging/main libxft2 armhf 2.3.1-1 [55.4 kB]
Get:47 http://172.17.0.1/private/ jessie-staging/main fontconfig armhf 2.9.0-7.1 [348 kB]
Get:48 http://172.17.0.1/private/ jessie-staging/main libpango1.0-0 armhf 1.30.0-1 [417 kB]
Get:49 http://172.17.0.1/private/ jessie-staging/main libpaper1 armhf 1.1.24+nmu2 [20.9 kB]
Get:50 http://172.17.0.1/private/ jessie-staging/main libpcrecpp0 armhf 1:8.31-2 [125 kB]
Get:51 http://172.17.0.1/private/ jessie-staging/main libsm6 armhf 2:1.2.1-2 [32.5 kB]
Get:52 http://172.17.0.1/private/ jessie-staging/main libjbig0 armhf 2.0-2 [31.5 kB]
Get:53 http://172.17.0.1/private/ jessie-staging/main libtiff5 armhf 4.0.2-6 [226 kB]
Get:54 http://172.17.0.1/private/ jessie-staging/main libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:55 http://172.17.0.1/private/ jessie-staging/main libxt6 armhf 1:1.1.3-1 [181 kB]
Get:56 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.14-2 [53.8 kB]
Get:57 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.1.1-10 [130 kB]
Get:58 http://172.17.0.1/private/ jessie-staging/main cdbs all 0.4.121 [80.5 kB]
Get:59 http://172.17.0.1/private/ jessie-staging/main html2text armhf 1.3.2a-15 [98.5 kB]
Get:60 http://172.17.0.1/private/ jessie-staging/main libasprintf-dev armhf 0.18.1.1-10 [26.7 kB]
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Get:62 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.1.1-10 [1721 kB]
Get:63 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:64 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:65 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20120909 [705 kB]
Get:66 http://172.17.0.1/private/ jessie-staging/main gfortran-4.6 armhf 4.6.3-14+rpi1 [4833 kB]
Get:67 http://172.17.0.1/private/ jessie-staging/main gfortran armhf 4:4.6.3-8 [1134 B]
Get:68 http://172.17.0.1/private/ jessie-staging/main libblas3 armhf 1.2.20110419-5 [201 kB]
Get:69 http://172.17.0.1/private/ jessie-staging/main libblas-dev armhf 1.2.20110419-5 [206 kB]
Get:70 http://172.17.0.1/private/ jessie-staging/main libbz2-dev armhf 1.0.6-4 [33.9 kB]
Get:71 http://172.17.0.1/private/ jessie-staging/main libjpeg8-dev armhf 8d-1 [238 kB]
Get:72 http://172.17.0.1/private/ jessie-staging/main liblapack3 armhf 3.4.2+dfsg-1 [3584 kB]
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Get:74 http://172.17.0.1/private/ jessie-staging/main libtinfo-dev armhf 5.9+20130504-1 [92.5 kB]
Get:75 http://172.17.0.1/private/ jessie-staging/main libncurses5-dev armhf 5.9+20130504-1 [201 kB]
Get:76 http://172.17.0.1/private/ jessie-staging/main libpaper-utils armhf 1.1.24+nmu2 [17.9 kB]
Get:77 http://172.17.0.1/private/ jessie-staging/main libpcre3-dev armhf 1:8.31-2 [350 kB]
Get:78 http://172.17.0.1/private/ jessie-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-1 [212 kB]
Get:79 http://172.17.0.1/private/ jessie-staging/main libpng12-dev armhf 1.2.49-4 [260 kB]
Get:80 http://172.17.0.1/private/ jessie-staging/main libreadline6-dev armhf 6.2+dfsg-0.1 [164 kB]
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Get:82 http://172.17.0.1/private/ jessie-staging/main zip armhf 3.0-7 [333 kB]
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Get:84 http://172.17.0.1/private/ jessie-staging/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
Get:85 http://172.17.0.1/private/ jessie-staging/main tcl8.5 armhf 8.5.11-2 [1569 kB]
Get:86 http://172.17.0.1/private/ jessie-staging/main tk8.5 armhf 8.5.11-2 [1121 kB]
Get:87 http://172.17.0.1/private/ jessie-staging/main r-base-core armhf 3.0.0-2 [21.2 MB]
Get:88 http://172.17.0.1/private/ jessie-staging/main r-base-dev all 3.0.0-2 [3900 B]
Get:89 http://172.17.0.1/private/ jessie-staging/main r-cran-mvtnorm armhf 0.9-9992-1 [363 kB]
Get:90 http://172.17.0.1/private/ jessie-staging/main r-cran-survival armhf 2.36-14-1 [1441 kB]
debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 11288 files and directories currently installed.)
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Setting up libncursesw5:armhf (5.9+20130504-1) ...
Setting up libpcre3:armhf (1:8.31-2) ...
Setting up libpipeline1:armhf (1.2.3-1) ...
Setting up groff-base (1.22.2-2) ...
Setting up bsdmainutils (9.0.5) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.6.3-6) ...
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Setting up libfreetype6:armhf (2.4.9-1.1) ...
Setting up ucf (3.0025+nmu3) ...
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Setting up fontconfig-config (2.9.0-7.1) ...
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Setting up libpixman-1-0:armhf (0.26.0-4) ...
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Setting up libxau6:armhf (1:1.0.7-1) ...
Setting up libxdmcp6:armhf (1:1.1.1-1) ...
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Setting up libcairo2:armhf (1.12.14-4) ...
Setting up libffi6:armhf (3.0.13-4) ...
Setting up libglib2.0-0:armhf (2.36.1-2build1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.6-2) ...
Setting up libdatrie1:armhf (0.2.6-2) ...
Setting up libunistring0:armhf (0.9.3-5) ...
Setting up libgettextpo0:armhf (0.18.1.1-10) ...
Setting up gcc-4.8-base:armhf (4.8.0-7+rpi1) ...
Setting up libgfortran3:armhf (4.8.0-7+rpi1) ...
Setting up x11-common (1:7.7+3) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:armhf (2:1.0.8-2) ...
Setting up libjpeg8:armhf (8d-1) ...
Setting up libthai-data (0.1.19-2) ...
Setting up libthai0:armhf (0.1.19-2) ...
Setting up libxft2:armhf (2.3.1-1) ...
Setting up fontconfig (2.9.0-7.1) ...
Regenerating fonts cache... done.
Setting up libpango1.0-0:armhf (1.30.0-1) ...
Setting up libpaper1:armhf (1.1.24+nmu2) ...
Creating config file /etc/papersize with new version
Setting up libpcrecpp0:armhf (1:8.31-2) ...
Setting up libsm6:armhf (2:1.2.1-2) ...
Setting up libjbig0:armhf (2.0-2) ...
Setting up libtiff5:armhf (4.0.2-6) ...
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libxt6:armhf (1:1.1.3-1) ...
Setting up file (1:5.14-2) ...
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Setting up cdbs (0.4.121) ...
Setting up html2text (1.3.2a-15) ...
Setting up libasprintf-dev:armhf (0.18.1.1-10) ...
Setting up libgettextpo-dev:armhf (0.18.1.1-10) ...
Setting up gettext (0.18.1.1-10) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20120909) ...
Setting up gfortran-4.6 (4.6.3-14+rpi1) ...
Setting up gfortran (4:4.6.3-8) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
Setting up libblas3 (1.2.20110419-5) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (1.2.20110419-5) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libbz2-dev:armhf (1.0.6-4) ...
Setting up libjpeg8-dev:armhf (8d-1) ...
Setting up liblapack3 (3.4.2+dfsg-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up liblapack-dev (3.4.2+dfsg-1) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up libtinfo-dev:armhf (5.9+20130504-1) ...
Setting up libncurses5-dev:armhf (5.9+20130504-1) ...
Setting up libpaper-utils (1.1.24+nmu2) ...
Setting up libpcre3-dev:armhf (1:8.31-2) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-1) ...
Setting up libpng12-dev (1.2.49-4) ...
Setting up libreadline6-dev:armhf (6.2+dfsg-0.1) ...
Setting up libreadline-dev:armhf (6.2+dfsg-0.1) ...
Setting up zip (3.0-7) ...
Setting up unzip (6.0-9) ...
Setting up xdg-utils (1.1.0~rc1+git20111210-7) ...
Setting up tcl8.5 (8.5.11-2) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
Setting up tk8.5 (8.5.11-2) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
Setting up r-base-core (3.0.0-2) ...
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (3.0.0-2) ...
Setting up r-cran-mvtnorm (0.9-9992-1) ...
Setting up r-cran-survival (2.36-14-1) ...
Setting up sbuild-build-depends-r-cran-msm-dummy (0.invalid.0) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.9.4-imx4 armhf (armv7l)
Toolchain package versions: binutils_2.22-8 dpkg-dev_1.16.10 g++-4.6_4.6.3-14+rpi1 gcc-4.6_4.6.3-14+rpi1 libc6-dev_2.13-38+rpi2 libstdc++6_4.7.2-5+rpi1 libstdc++6-4.6-dev_4.6.3-14+rpi1 linux-libc-dev_3.2.41-2+rpi1
Package versions: apt_0.9.7.8+rpi1 base-files_7.1 base-passwd_3.5.26 bash_4.2+dfsg-0.1 binutils_2.22-8 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.3 build-essential_11.5+b1 bzip2_1.0.6-4 cdbs_0.4.121 coreutils_8.13-3.5 cpio_2.11+dfsg-0.1 cpp_4:4.6.3-8 cpp-4.6_4.6.3-14+rpi1 dash_0.5.7-3 debconf_1.5.50 debconf-i18n_1.5.50 debfoster_2.7-1.2 debhelper_9.20120909 debianutils_4.3.2 diffutils_1:3.2-6 dpkg_1.16.10 dpkg-dev_1.16.10 e2fslibs_1.42.5-1.1 e2fsprogs_1.42.5-1.1 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-4 fontconfig_2.9.0-7.1 fontconfig-config_2.9.0-7.1 fonts-dejavu-core_2.33+svn2514-3 g++_4:4.6.3-8 g++-4.6_4.6.3-14+rpi1 gcc_4:4.6.3-8 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.3-14+rpi1 gcc-4.6-base_4.6.3-14+rpi1 gcc-4.7-base_4.7.2-5+rpi1 gcc-4.8-base_4.8.0-7+rpi1 gettext_0.18.1.1-10 gettext-base_0.18.1.1-10 gfortran_4:4.6.3-8 gfortran-4.6_4.6.3-14+rpi1 gnupg_1.4.12-7 gpgv_1.4.12-7 grep_2.12-2 groff-base_1.22.2-2 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15 initramfs-tools_0.112 initscripts_2.88dsf-41 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.1-3.1+rpi1 kmod_9-3 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7.8+rpi1 libasprintf-dev_0.18.1.1-10 libasprintf0c2_0.18.1.1-10 libattr1_1:2.4.46-8 libblas-dev_1.2.20110419-5 libblas3_1.2.20110419-5 libblkid1_2.20.1-5.3 libbz2-1.0_1.0.6-4 libbz2-dev_1.0.6-4 libc-bin_2.13-38+rpi2 libc-dev-bin_2.13-38+rpi2 libc6_2.13-38+rpi2 libc6-dev_2.13-38+rpi2 libcairo2_1.12.14-4 libclass-isa-perl_0.36-5 libcomerr2_1.42.5-1.1 libcroco3_0.6.6-2 libdatrie1_0.2.6-2 libdb5.1_5.1.29-5 libdbus-1-3_1.6.8-1 libdpkg-perl_1.16.10 libexpat1_2.1.0-3 libffi6_3.0.13-4 libfontconfig1_2.9.0-7.1 libfreetype6_2.4.9-1.1 libgc1c2_1:7.1-9.1 libgcc1_1:4.7.2-5+rpi1 libgdbm3_1.8.3-11 libgettextpo-dev_0.18.1.1-10 libgettextpo0_0.18.1.1-10 libgfortran3_4.8.0-7+rpi1 libglib2.0-0_2.36.1-2build1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.2-5+rpi1 libice6_2:1.0.8-2 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 libklibc_2.0.1-3.1+rpi1 libkmod2_9-3 liblapack-dev_3.4.2+dfsg-1 liblapack3_3.4.2+dfsg-1 liblocale-gettext-perl_1.05-7 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmount1_2.20.1-5.3 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9+20130504-1 libncurses5-dev_5.9+20130504-1 libncursesw5_5.9+20130504-1 libnih-dbus1_1.0.3-4.1 libnih1_1.0.3-4.1 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-9 libpam0g_1.1.3-7.1 libpango1.0-0_1.30.0-1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.3-1 libpixman-1-0_0.26.0-4 libpng12-0_1.2.49-4 libpng12-dev_1.2.49-4 libprocps0_1:3.3.3-3 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-15 libsm6_2:1.2.1-2 libss2_1.42.5-1.1 libstdc++6_4.7.2-5+rpi1 libstdc++6-4.6-dev_4.6.3-14+rpi1 libswitch-perl_2.16-2 libtext-charwidth-perl_0.04-7 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.19-2 libthai0_0.1.19-2 libtiff5_4.0.2-6 libtimedate-perl_1.2000-1 libtinfo-dev_5.9+20130504-1 libtinfo5_5.9+20130504-1 libudev0_175-7.2 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20+nmu1 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.3 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-2 libxcb-shm0_1.8.1-2 libxcb1_1.8.1-2 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxft2_2.3.1-1 libxml2_2.8.0+dfsg1-7+nmu1 libxrender1_1:0.9.7-1 libxss1_1:1.2.2-1 libxt6_1:1.1.3-1 linux-libc-dev_3.2.41-2+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian8+rpi1 make_3.81-8.2 makedev_2.3.1-92 man-db_2.6.3-6 mawk_1.3.3-17 mount_2.20.1-5.3 mountall_2.46 multiarch-support_2.13-38+rpi2 ncurses-base_5.9-10 ncurses-bin_5.9+20130504-1 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-21+rpi1 perl-base_5.14.2-21+rpi1 perl-modules_5.14.2-21+rpi1 plymouth_0.8.5.1-5 po-debconf_1.0.16+nmu2 procps_1:3.3.3-3 r-base-core_3.0.0-2 r-base-dev_3.0.0-2 r-cran-mvtnorm_0.9-9992-1 r-cran-survival_2.36-14-1 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-msm-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-41 sysvinit_2.88dsf-41 sysvinit-utils_2.88dsf-41 tar_1.26+dfsg-0.1 tcl8.5_8.5.11-2 tk8.5_8.5.11-2 ttf-dejavu-core_2.33+svn2514-3 tzdata_2013b-2 ucf_3.0025+nmu3 udev_175-7.2 unzip_6.0-9 util-linux_2.20.1-5.3 x11-common_1:7.7+3 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-7 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Wed Apr 24 02:11:18 2013 UTC using DSA key ID 91B0D3B7
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-cran-msm_1.1.4-1.dsc
dpkg-source: info: extracting r-cran-msm in r-cran-msm-1.1.4
dpkg-source: info: unpacking r-cran-msm_1.1.4.orig.tar.gz
dpkg-source: info: unpacking r-cran-msm_1.1.4-1.debian.tar.gz
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
COLUMNS=80
CONSOLE=/dev/console
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INIT_VERSION=sysvinit-2.88
LC_ALL=POSIX
LINES=24
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PREVLEVEL=N
PWD=/
RUNLEVEL=2
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-8b7163b7-2f96-492a-8a9d-fd9d545cb635
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
previous=N
runlevel=2
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-cran-msm
dpkg-buildpackage: source version 1.1.4-1
dpkg-buildpackage: source changed by Dirk Eddelbuettel <edd@debian.org>
dpkg-source --before-build r-cran-msm-1.1.4
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
test -x debian/rules
dh_testroot
dh_clean
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
rm -f src/msm.so
debian/rules build-arch
test -x debian/rules
mkdir -p "."
fakeroot debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
echo "R:Depends=r-base-core (>= 3.0.0-2)" >> debian/r-cran-msm.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-cran-msm/usr/lib/R/site-library --clean \
. ; \
else \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-cran-msm/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'msm' ...
** package 'msm' successfully unpacked and MD5 sums checked
** libs
make[1]: Entering directory `/«PKGBUILDDIR»/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c analyticp.c -o analyticp.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c hmm.c -o hmm.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c lik.c -o lik.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c pijt.c -o pijt.o
gcc -std=gnu99 -shared -o msm.so analyticp.o hmm.o lik.o pijt.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory `/«PKGBUILDDIR»/src'
make[1]: Entering directory `/«PKGBUILDDIR»/src'
make[1]: Leaving directory `/«PKGBUILDDIR»/src'
installing to /«PKGBUILDDIR»/debian/r-cran-msm/usr/lib/R/site-library/msm/libs
** R
** data
** inst
** preparing package for lazy loading
Error : package 'mvtnorm' was built before R 3.0.0: please re-install it
ERROR: lazy loading failed for package 'msm'
* removing '/«PKGBUILDDIR»/debian/r-cran-msm/usr/lib/R/site-library/msm'
make: *** [R_any_arch] Error 1
dpkg-buildpackage: error: fakeroot debian/rules binary-arch gave error exit status 2
────────────────────────────────────────────────────────────────────────────────
Build finished at 20130604-0947
Finished
────────
E: Build failure (dpkg-buildpackage died)
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 1740
Build-Time: 45
Distribution: jessie-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 358
Job: r-cran-msm_1.1.4-1
Machine Architecture: armhf
Package: r-cran-msm
Package-Time: 469
Source-Version: 1.1.4-1
Space: 1740
Status: attempted
Version: 1.1.4-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20130604-0947
Build needed 00:07:49, 1740k disc space