r-cran-hdf5r →
1.3.6+dfsg-1 →
armhf → 2022-09-28 07:26:22
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| r-cran-hdf5r 1.3.6+dfsg-1 (armhf) Wed, 28 Sep 2022 07:08:10 +0000 |
+==============================================================================+
Package: r-cran-hdf5r
Version: 1.3.6+dfsg-1
Source Version: 1.3.6+dfsg-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-d4e2c9d3-668a-44dc-a897-7cfb651e6a4e' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.3 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.1 MB]
Fetched 27.4 MB in 11s (2569 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-hdf5r' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-hdf5r.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-hdf5r.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1238 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-cran-hdf5r 1.3.6+dfsg-1 (dsc) [2158 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-cran-hdf5r 1.3.6+dfsg-1 (tar) [1231 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-cran-hdf5r 1.3.6+dfsg-1 (diff) [4880 B]
Fetched 1238 kB in 0s (6726 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-hdf5r-sc5hwK/r-cran-hdf5r-1.3.6+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-hdf5r-sc5hwK' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Zimxua/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Zimxua/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Zimxua/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Zimxua/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Zimxua/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Zimxua/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Zimxua/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Zimxua/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (3610 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 37 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Zimxua/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (35.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12805 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-r6, r-cran-bit64, libhdf5-dev
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-r6, r-cran-bit64, libhdf5-dev
dpkg-deb: building package 'sbuild-build-depends-r-cran-hdf5r-dummy' in '/<<BUILDDIR>>/resolver-Zimxua/apt_archive/sbuild-build-depends-r-cran-hdf5r-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-cran-hdf5r-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Zimxua/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Zimxua/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Zimxua/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Zimxua/apt_archive ./ Sources [522 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Zimxua/apt_archive ./ Packages [605 B]
Fetched 2460 B in 1s (3715 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-cran-hdf5r build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates cpp
cpp-12 dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core g++ g++-12 gcc gcc-12
gcc-12-base gettext gettext-base gfortran gfortran-12 groff-base
hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0
libalgorithm-c3-perl libarchive-zip-perl libasan8 libatomic1
libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
libbrotli1 libbsd0 libbz2-dev libcairo2 libcc1-0 libclass-c3-perl
libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4
libcurl4-openssl-dev libdata-optlist-perl libdatrie1 libdebhelper-perl
libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgcc-12-dev libgcc-s1 libgfortran-12-dev
libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu71 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev
libregexp-ipv6-perl librtmp1 libscalar-list-utils-perl libsm6 libssh2-1
libssl-dev libstdc++-12-dev libstdc++6 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libsz2 libtcl8.6
libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
libtry-tiny-perl libubsan1 libuchardet0 liburi-perl libvariable-magic-perl
libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config
po-debconf r-base-core r-base-dev r-cran-bit r-cran-bit64 r-cran-r6 ucf
unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-12-locales
cpp-12-doc debtags dh-make postgresql-client-common gcc-12-doc gcc-multilib
manpages-dev flex bison gdb gcc-doc gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-12-doc libcoarrays-dev groff
liblapack-doc libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev
libssh2-1-dev libhdf5-doc icu-doc liblzma-doc ncurses-doc
libscalar-number-perl readline-doc libssl-doc libstdc++-12-doc tcl8.6 tk8.6
libtool-doc gcj-jdk libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev
m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info
| r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
r-cran-testthat r-cran-roxygen2 r-cran-knitr r-cran-rmarkdown
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-testthat
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-12 groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev
libaec0 libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev
libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl
libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-12-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu71 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev
libregexp-ipv6-perl librtmp1 libscalar-list-utils-perl libsm6 libssh2-1
libssl-dev libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libsz2 libtcl8.6 libthai-data libthai0
libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0
liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl pkg-config po-debconf r-base-core
r-base-dev r-cran-bit r-cran-bit64 r-cran-r6
sbuild-build-depends-r-cran-hdf5r-dummy ucf unzip x11-common xauth xdg-utils
zip zlib1g-dev
The following packages will be upgraded:
cpp cpp-12 g++ g++-12 gcc gcc-12 gcc-12-base libasan8 libatomic1 libcc1-0
libgcc-12-dev libgcc-s1 libgomp1 libstdc++-12-dev libstdc++6 libubsan1
16 upgraded, 185 newly installed, 0 to remove and 21 not upgraded.
Need to get 134 MB of archives.
After this operation, 295 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Zimxua/apt_archive ./ sbuild-build-depends-r-cran-hdf5r-dummy 0.invalid.0 [896 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 12.2.0-3+rpi1 [32.2 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 12.2.0-3+rpi1 [95.4 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 12.2.0-3+rpi1 [8236 B]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libasan8 armhf 12.2.0-3+rpi1 [2090 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 12.2.0-3+rpi1 [861 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12.2.0-3+rpi1 [208 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12.2.0-3+rpi1 [504 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf g++-12 armhf 12.2.0-3+rpi1 [7910 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-12-dev armhf 12.2.0-3+rpi1 [2025 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libgcc-12-dev armhf 12.2.0-3+rpi1 [727 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf gcc-12 armhf 12.2.0-3+rpi1 [14.2 MB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf cpp-12 armhf 12.2.0-3+rpi1 [7160 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 12.2.0-3+rpi1 [36.2 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1 [137 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-3 [34.3 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-3 [1364 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.5-2 [1372 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-9 [171 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-9 [510 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf g++ armhf 4:12.2.0-1+rpi1 [1628 B]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf gcc armhf 4:12.2.0-1+rpi1 [5192 B]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf cpp armhf 4:12.2.0-1+rpi1 [20.2 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.9.1 [196 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-3 [10.4 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-9 [1220 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.9.1 [1071 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-27 [152 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.9-1 [83.3 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.38-2 [273 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.13.1-4.5 [281 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.5 [330 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.6-1 [109 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.1-2 [308 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.1-2 [704 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-6 [496 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.49.0-1 [69.8 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.85.0-1 [325 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.0-1+rpi1 [1265 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-3+rpi1 [238 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.5 [416 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 5.2.0-2 [1835 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.10+ds-1 [214 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.10+ds-1 [68.6 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.10+ds-1 [58.3 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.12-1 [60.5 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-1 [121 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-4 [290 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.4-1 [50.2 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.2.1-2 [27.7 MB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-12-dev armhf 12.2.0-3+rpi1 [285 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf gfortran-12 armhf 12.2.0-3+rpi1 [7509 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:12.2.0-1+rpi1 [1432 B]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-2 [114 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.1-2 [2847 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3+20220423-2 [289 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3+20220423-2 [940 B]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.2~rc2-2 [122 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.40-1+b2 [208 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.40-1+b2 [200 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.40-1+b2 [53.7 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.40-1+b2 [637 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-14 [239 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-14 [232 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-14 [150 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-14 [569 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.38-2 [352 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2.1 [218 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 71.1-3 [177 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 71.1-3 [9799 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1.1-1 [36.9 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.2.1-2 [4488 B]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.27-1 [17.3 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-2 [13.5 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.12-1 [93.7 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.37-1 [80.9 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-1+b2 [24.5 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-2 [11.0 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2 [10.9 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-2 [13.1 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b3 [15.7 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-2 [24.5 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-1 [24.2 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libscalar-list-utils-perl armhf 1:1.63-1 [61.8 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-2 [14.3 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-2 [8044 B]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-2 [8500 B]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.15-1 [12.6 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-2 [12.0 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-2 [13.3 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-2 [16.8 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1 [18.2 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2200-1+b1 [802 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.63-1 [43.4 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-2 [11.6 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.85.0-1 [320 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-7+b2 [60.5 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf hdf5-helpers armhf 1.10.8+repack-1 [45.1 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf libaec-dev armhf 1.0.6-1 [17.6 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf libcurl4-openssl-dev armhf 7.85.0-1 [402 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.8+repack-1 [1235 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.8+repack-1 [133 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-fortran-102 armhf 1.10.8+repack-1 [98.7 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.8+repack-1 [81.7 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.8+repack-1 [56.0 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.8+repack-1 [42.4 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf libssl-dev armhf 3.0.5-2 [2116 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf libhdf5-dev armhf 1.10.8+repack-1 [2325 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bit armhf 4.0.4+dfsg-1 [418 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
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Setting up libexpat1:armhf (2.4.9-1) ...
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No schema files found: doing nothing.
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invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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Creating config file /etc/papersize with new version
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Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
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Not building database; man-db/auto-update is not 'true'.
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Setting up libhdf5-hl-100:armhf (1.10.8+repack-1) ...
Setting up g++-12 (12.2.0-3+rpi1) ...
Setting up libtool (2.4.7-4) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up gcc (4:12.2.0-1+rpi1) ...
Setting up dh-autoreconf (20) ...
Setting up gfortran-12 (12.2.0-3+rpi1) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.8+repack-1) ...
Setting up libhdf5-fortran-102:armhf (1.10.8+repack-1) ...
Setting up g++ (4:12.2.0-1+rpi1) ...
Setting up libpackage-deprecationmanager-perl (0.17-2) ...
Setting up libhdf5-hl-fortran-100:armhf (1.10.8+repack-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up libmoose-perl:armhf (2.2200-1+b1) ...
Setting up debhelper (13.9.1) ...
Setting up gfortran (4:12.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libhdf5-dev (1.10.8+repack-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Processing triggers for libc-bin (2.34-7+rpi1) ...
Processing triggers for sgml-base (1.30) ...
Setting up libfontconfig1:armhf (2.13.1-4.5) ...
Setting up fontconfig (2.13.1-4.5) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.4-1) ...
Setting up libtk8.6:armhf (8.6.12-1) ...
Setting up libpango-1.0-0:armhf (1.50.10+ds-1) ...
Setting up libcairo2:armhf (1.16.0-6) ...
Setting up libpangoft2-1.0-0:armhf (1.50.10+ds-1) ...
Setting up libpangocairo-1.0-0:armhf (1.50.10+ds-1) ...
Setting up r-base-core (4.2.1-2) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-base-dev (4.2.1-2) ...
Setting up r-cran-bit (4.0.4+dfsg-1) ...
Setting up r-cran-bit64 (4.0.5-1) ...
Setting up dh-r (20210816) ...
Setting up sbuild-build-depends-r-cran-hdf5r-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.34-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.38.90.20220713-2+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-3+rpi1 gcc-12_12.2.0-3+rpi1 libc6-dev_2.34-7+rpi1 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.6.0 bash_5.2~rc2-2 binutils_2.38.90.20220713-2+rpi1 binutils-arm-linux-gnueabihf_2.38.90.20220713-2+rpi1 binutils-common_2.38.90.20220713-2+rpi1 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_8.32-4.1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-3+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 dctrl-tools_2.24-3 debconf_1.5.79 debhelper_13.9.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig_2.13.1-4.5 fontconfig-config_2.13.1-4.5 fonts-dejavu-core_2.37-2 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-3+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-3+rpi1 gcc-12-base_12.2.0-3+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-9 gettext-base_0.21-9 gfortran_4:12.2.0-1+rpi1 gfortran-12_12.2.0-3+rpi1 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hdf5-helpers_1.10.8+repack-1 hostname_3.23 icu-devtools_71.1-3 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libalgorithm-c3-perl_0.11-1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libasan8_12.2.0-3+rpi1 libassuan0_2.5.5-4 libatomic1_12.2.0-3+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2 libbinutils_2.38.90.20220713-2+rpi1 libblas-dev_3.10.1-2 libblas3_3.10.1-2 libblkid1_2.38.1-1 libbrotli1_1.0.9-2+b2 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.34-7+rpi1 libc-dev-bin_2.34-7+rpi1 libc6_2.34-7+rpi1 libc6-dev_2.34-7+rpi1 libcairo2_1.16.0-6 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-3+rpi1 libclass-c3-perl_0.35-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-2 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.38.90.20220713-2+rpi1 libctf0_2.38.90.20220713-2+rpi1 libcurl3-gnutls_7.85.0-1 libcurl4_7.85.0-1 libcurl4-openssl-dev_7.85.0-1 libdata-optlist-perl_0.112-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.9.1 libdeflate0_1.12-1 libdevel-callchecker-perl_0.008-1+b3 libdevel-globaldestruction-perl_0.14-2 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-1 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.21.9+rpi1 libdynaloader-functions-perl_0.003-2 libelf1_0.187-2+rpi2 libencode-locale-perl_1.05-2 libeval-closure-perl_0.14-2 libexpat1_2.4.9-1 libext2fs2_1.46.5-2 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-1 libfontconfig1_2.13.1-4.5 libfreetype6_2.12.1+dfsg-3 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.2.0-3+rpi1 libgcc-s1_12.2.0-3+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-2 libgdbm6_1.23-2 libgfortran-12-dev_12.2.0-3+rpi1 libgfortran5_12.2.0-3+rpi1 libglib2.0-0_2.74.0-1+rpi1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.2.0-3+rpi1 libgpg-error0_1.45-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20-1 libharfbuzz0b_5.2.0-2 libhdf5-103-1_1.10.8+repack-1 libhdf5-cpp-103-1_1.10.8+repack-1 libhdf5-dev_1.10.8+repack-1 libhdf5-fortran-102_1.10.8+repack-1 libhdf5-hl-100_1.10.8+repack-1 libhdf5-hl-cpp-100_1.10.8+repack-1 libhdf5-hl-fortran-100_1.10.8+repack-1 libhogweed6_3.8.1-2 libhttp-date-perl_6.05-2 libhttp-message-perl_6.37-1 libice6_2:1.0.10-1 libicu-dev_71.1-3 libicu71_71.1-3 libidn2-0_2.3.3-1 libio-html-perl_1.004-3 libisl23_0.25-1 libjbig0_2.1-3.1+b2 libjpeg-dev_1:2.1.2-1 libjpeg62-turbo_1:2.1.2-1 libjpeg62-turbo-dev_1:2.1.2-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 liblapack-dev_3.10.1-2 liblapack3_3.10.1-2 libldap-2.5-0_2.5.12+dfsg-2 liblerc4_4.0.0+ds-1 liblwp-mediatypes-perl_6.04-1 liblz4-1_1.9.4-1+rpi1 liblzma-dev_5.2.5-2.1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmodule-implementation-perl_0.09-2 libmodule-runtime-conflicts-perl_0.003-2 libmodule-runtime-perl_0.016-2 libmoose-perl_2.2200-1+b1 libmount1_2.38.1-1 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libmro-compat-perl_0.15-1 libnamespace-clean-perl_0.27-2 libncurses-dev_6.3+20220423-2 libncurses5-dev_6.3+20220423-2 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.49.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpackage-deprecationmanager-perl_0.17-2 libpackage-stash-perl_0.40-1 libpackage-stash-xs-perl_0.30-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-2 libpam-modules-bin_1.5.2-2 libpam-runtime_1.5.2-2 libpam0g_1.5.2-2 libpango-1.0-0_1.50.10+ds-1 libpangocairo-1.0-0_1.50.10+ds-1 libpangoft2-1.0-0_1.50.10+ds-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libparams-classify-perl_0.015-2 libparams-util-perl_1.102-1+b2 libpcre16-3_2:8.39-14 libpcre2-16-0_10.40-1+b2 libpcre2-32-0_10.40-1+b2 libpcre2-8-0_10.40-1+b2 libpcre2-dev_10.40-1+b2 libpcre2-posix3_10.40-1+b2 libpcre3_2:8.39-14 libpcre3-dev_2:8.39-14 libpcre32-3_2:8.39-14 libpcrecpp0v5_2:8.39-14 libperl5.34_5.34.0-5 libpipeline1_1.5.6-3 libpixman-1-0_0.40.0-1 libpng-dev_1.6.38-2 libpng16-16_1.6.38-2 libpsl5_0.21.0-1.2 libreadline-dev_8.2~rc2-2 libreadline8_8.2~rc2-2 libregexp-ipv6-perl_0.03-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libscalar-list-utils-perl_1:1.63-1 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsm6_2:1.2.3-1 libsmartcols1_2.38.1-1 libsqlite3-0_3.39.3-1 libss2_1.46.5-2 libssh2-1_1.10.0-3+b1 libssl-dev_3.0.5-2 libssl1.1_1.1.1o-1 libssl3_3.0.5-2 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 libsub-exporter-perl_0.988-1 libsub-exporter-progressive-perl_0.001013-2 libsub-identify-perl_0.14-2 libsub-install-perl_0.928-2 libsub-name-perl_0.26-2 libsub-override-perl_0.09-3 libswitch-perl_2.17-3 libsystemd0_251.3-1+rpi1 libsz2_1.0.6-1 libtasn1-6_4.18.0-4 libtcl8.6_8.6.12+dfsg-1 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff5_4.4.0-4 libtimedate-perl_2.3300-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.12-1 libtool_2.4.7-4 libtry-tiny-perl_0.31-1 libubsan1_12.2.0-3+rpi1 libuchardet0_0.0.7-1 libudev1_251.3-1+rpi1 libunistring2_1.0-1 liburi-perl_5.12-1 libuuid1_2.38.1-1 libvariable-magic-perl_0.63-1 libwebp7_1.2.2-2 libwww-curl-perl_4.17-7+b2 libwww-curl-simple-perl_0.100191-3 libx11-6_2:1.8.1-2 libx11-data_2:1.8.1-2 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.4-1 libxml2_2.9.14+dfsg-1 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.2+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.10.2-3 mawk_1.3.4.20200120-3.1 mount_2.38.1-1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 openssl_3.0.5-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 pinentry-curses_1.2.0-2 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 r-base-core_4.2.1-2 r-base-dev_4.2.1-2 r-cran-bit_4.0.4+dfsg-1 r-cran-bit64_4.0.5-1 r-cran-r6_2.5.1-1 raspbian-archive-keyring_20120528.2 readline-common_8.2~rc2-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-hdf5r-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sysvinit-utils_3.04-1 tar_1.34+dfsg-1 tzdata_2022c-1 ucf_3.0043 unzip_6.0-27 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 x11-common_1:7.7+23 xauth_1:1.1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2.1 zip_3.0-12 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.AKbcbQ9a/trustedkeys.kbx': General error
gpgv: Signature made Fri Sep 23 12:43:17 2022 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "nilesh@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./r-cran-hdf5r_1.3.6+dfsg-1.dsc
dpkg-source: info: extracting r-cran-hdf5r in /<<BUILDDIR>>/r-cran-hdf5r-1.3.6+dfsg
dpkg-source: info: unpacking r-cran-hdf5r_1.3.6+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-cran-hdf5r_1.3.6+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hdf5path.patch
dpkg-source: info: applying fix-hdf.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-d4e2c9d3-668a-44dc-a897-7cfb651e6a4e
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-cran-hdf5r
dpkg-buildpackage: info: source version 1.3.6+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.6+dfsg'
dh_auto_clean
rm -f src/Wrapper_auto_*
rm -f src/const_export.c src/const_export.h src/datatype_export.c src/datatype_export.h src/export_auto.h
rm -f config.log config.status src/HelperStructs.h src/Makevars
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.6+dfsg'
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-cran-hdf5r/ -a -O--buildsystem=R
I: R packages needed for DEP8: testthat
I: R Package: hdf5r Version: 1.3.6
I: Building using R version 4.2.1-2
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Fri, 23 Sep 2022 18:08:35 +0530
mkdir -p /<<BUILDDIR>>/r-cran-hdf5r-1.3.6\+dfsg/debian/r-cran-hdf5r/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-cran-hdf5r-1.3.6\+dfsg/debian/r-cran-hdf5r/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 23 Sep 2022 18:08:35 +0530'"
* installing *source* package 'hdf5r' ...
file 'inst/doc/hdf5r.html' is missing
files 'configure', 'src/1_10_3/datatype_export.c', 'src/Makevars.in' have the wrong MD5 checksums
** using staged installation
checking for a sed that does not truncate output... /bin/sed
checking for gawk... no
checking for mawk... mawk
checking for grep that handles long lines and -e... /bin/grep
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for h5cc... /usr/bin/h5cc
checking for HDF5 libraries... yes (version 1.10.8)
checking for hdf5.h... yes
checking for H5Fcreate in -lhdf5... yes
checking for hdf5_hl.h... yes
checking for H5LTpath_valid in -lhdf5_hl... yes
checking for main in -lhdf5_hl... yes
checking for matching HDF5 Fortran wrapper... /usr/bin/h5fc
Found hdf5 with version: 1.10.8
checking for ggrep... /bin/grep
checking whether /bin/grep accepts -o... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.6+dfsg/src'
cp 1_10_3/*.c 1_10_3/*.h .
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c const_export.c -o const_export.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c datatype_export.c -o datatype_export.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5A.c -o Wrapper_auto_H5A.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5.c -o Wrapper_auto_H5.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5D.c -o Wrapper_auto_H5D.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5DS.c -o Wrapper_auto_H5DS.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5E.c -o Wrapper_auto_H5E.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5F.c -o Wrapper_auto_H5F.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5G.c -o Wrapper_auto_H5G.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5I.c -o Wrapper_auto_H5I.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5IM.c -o Wrapper_auto_H5IM.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5L.c -o Wrapper_auto_H5L.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5LT.c -o Wrapper_auto_H5LT.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5O.c -o Wrapper_auto_H5O.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5P.c -o Wrapper_auto_H5P.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5R.c -o Wrapper_auto_H5R.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5S.c -o Wrapper_auto_H5S.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5TB.c -o Wrapper_auto_H5TB.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5T.c -o Wrapper_auto_H5T.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5Z.c -o Wrapper_auto_H5Z.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5FDcore.c -o Wrapper_auto_H5FDcore.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5FDfamily.c -o Wrapper_auto_H5FDfamily.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5FDlog.c -o Wrapper_auto_H5FDlog.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5FDsec2.c -o Wrapper_auto_H5FDsec2.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_auto_H5FDstdio.c -o Wrapper_auto_H5FDstdio.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c convert.c -o convert.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c hdf5r_init.c -o hdf5r_init.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c H5Error.c -o H5Error.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c H5ls.c -o H5ls.o
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Wrapper_manual_H5T.c -o Wrapper_manual_H5T.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o hdf5r.so const_export.o datatype_export.o Wrapper_auto_H5A.o Wrapper_auto_H5.o Wrapper_auto_H5D.o Wrapper_auto_H5DS.o Wrapper_auto_H5E.o Wrapper_auto_H5F.o Wrapper_auto_H5G.o Wrapper_auto_H5I.o Wrapper_auto_H5IM.o Wrapper_auto_H5L.o Wrapper_auto_H5LT.o Wrapper_auto_H5O.o Wrapper_auto_H5P.o Wrapper_auto_H5R.o Wrapper_auto_H5S.o Wrapper_auto_H5TB.o Wrapper_auto_H5T.o Wrapper_auto_H5Z.o Wrapper_auto_H5FDcore.o Wrapper_auto_H5FDfamily.o Wrapper_auto_H5FDlog.o Wrapper_auto_H5FDsec2.o Wrapper_auto_H5FDstdio.o convert.o hdf5r_init.o H5Error.o H5ls.o Wrapper_manual_H5T.o -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -L. -lhdf5_hl -lhdf5 -lz -lm -IPKG_CPPFLAGS -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.6+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.6+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.6+dfsg/src'
installing to /<<BUILDDIR>>/r-cran-hdf5r-1.3.6+dfsg/debian/r-cran-hdf5r/usr/lib/R/site-library/00LOCK-r-cran-hdf5r-1.3.6+dfsg/00new/hdf5r/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hdf5r)
rm -f /<<BUILDDIR>>/r-cran-hdf5r-1.3.6\+dfsg/debian/r-cran-hdf5r/usr/lib/R/site-library/hdf5r/LICENSE
W: Ignoring specified R dependency: R (>= 3.2.2)
I: Using r-cran-testthat for Recommends:testthat
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
W: Cannot find a debian package for Suggests:nycflights13
I: Using r-cran-reshape2 for Suggests:reshape2
I: Using r-cran-formatr for Suggests:formatR
I: Using r-cran-r6 for Imports:R6
I: Using r-cran-bit64 for Imports:bit64
I: Use r-cran-hdf5r as Debian binary package for variables substitution
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.6+dfsg'
dh_install
find debian -name m4 -type d | xargs rm -rf
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.6+dfsg'
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.6+dfsg'
dh_fixperms
find debian \( -name "*.txt" -o -name "*.R" -o -name "*.h" -o -name "*.csv" -o -name "*.brew" -o -name "*.Rmd" -o -name README \) -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.6+dfsg'
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-hdf5r' in '../r-cran-hdf5r_1.3.6+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-cran-hdf5r-dbgsym' in '../r-cran-hdf5r-dbgsym_1.3.6+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-cran-hdf5r_1.3.6+dfsg-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../r-cran-hdf5r_1.3.6+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-09-28T07:26:17Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-hdf5r_1.3.6+dfsg-1_armhf.changes:
----------------------------------------
Format: 1.8
Date: Fri, 23 Sep 2022 18:08:35 +0530
Source: r-cran-hdf5r
Binary: r-cran-hdf5r r-cran-hdf5r-dbgsym
Architecture: armhf
Version: 1.3.6+dfsg-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
r-cran-hdf5r - GNU R interface to the 'HDF5' binary data format
Closes: 1020049
Changes:
r-cran-hdf5r (1.3.6+dfsg-1) unstable; urgency=medium
.
[ Andreas Tille ]
* Team upload.
* New upstream version
* Standards-Version: 4.6.1 (routine-update)
* Reorder sequence of d/control fields by cme (routine-update)
.
[ Nilesh Patra ]
* debian/p/fix-hdf.patch: Do not add a enum before H5R_type_t since
the definition has changed in new hdf5 version (Closes: #1020049)
Checksums-Sha1:
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20af6b18f6b445c4d16acbaba6c2a87f5f2b5175 10231 r-cran-hdf5r_1.3.6+dfsg-1_armhf.buildinfo
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Checksums-Sha256:
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84b66fd4a8c6eaa7a2564bce6164759785093ee00b62ee0d471f7f4b16c9227d 10231 r-cran-hdf5r_1.3.6+dfsg-1_armhf.buildinfo
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Files:
3d2bf8fd9965191b3ac4adbb0f631cb0 394004 debug optional r-cran-hdf5r-dbgsym_1.3.6+dfsg-1_armhf.deb
0ca3970e44c72407fa11d147f6a87958 10231 gnu-r optional r-cran-hdf5r_1.3.6+dfsg-1_armhf.buildinfo
c1395fe5548e4ea2dc32777efec3365c 2166632 gnu-r optional r-cran-hdf5r_1.3.6+dfsg-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-hdf5r-dbgsym_1.3.6+dfsg-1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 394004 bytes: control archive=540 bytes.
394 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-hdf5r-dbgsym
Source: r-cran-hdf5r
Version: 1.3.6+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 468
Depends: r-cran-hdf5r (= 1.3.6+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for r-cran-hdf5r
Build-Ids: adec1f2eb376c9be45722b28431871b4ce6e66f2
drwxr-xr-x root/root 0 2022-09-23 12:38 ./
drwxr-xr-x root/root 0 2022-09-23 12:38 ./usr/
drwxr-xr-x root/root 0 2022-09-23 12:38 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-23 12:38 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-09-23 12:38 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-09-23 12:38 ./usr/lib/debug/.build-id/ad/
-rw-r--r-- root/root 468108 2022-09-23 12:38 ./usr/lib/debug/.build-id/ad/ec1f2eb376c9be45722b28431871b4ce6e66f2.debug
drwxr-xr-x root/root 0 2022-09-23 12:38 ./usr/share/
drwxr-xr-x root/root 0 2022-09-23 12:38 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-09-23 12:38 ./usr/share/doc/r-cran-hdf5r-dbgsym -> r-cran-hdf5r
r-cran-hdf5r_1.3.6+dfsg-1_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 2166632 bytes: control archive=5348 bytes.
921 bytes, 18 lines control
24558 bytes, 255 lines md5sums
Package: r-cran-hdf5r
Version: 1.3.6+dfsg-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 4656
Depends: r-base-core (>= 4.2.1-2), r-api-4.0, r-cran-r6, r-cran-bit64, libc6 (>= 2.4), libhdf5-103-1, libhdf5-hl-100
Recommends: r-cran-testthat
Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-reshape2, r-cran-formatr
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=hdf5r
Description: GNU R interface to the 'HDF5' binary data format
'HDF5' is a data model, library and file format for storing
and managing large amounts of data. This package provides a nearly
feature complete, object oriented wrapper for the 'HDF5' API
<https://support.hdfgroup.org/HDF5/doc/RM/RM_H5Front.html> using R6 classes.
Additionally, functionality is added so that 'HDF5' objects behave very
similar to their corresponding R counterparts.
drwxr-xr-x root/root 0 2022-09-23 12:38 ./
drwxr-xr-x root/root 0 2022-09-23 12:38 ./usr/
drwxr-xr-x root/root 0 2022-09-23 12:38 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-23 12:38 ./usr/lib/R/
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+------------------------------------------------------------------------------+
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| Cleanup |
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Purging /<<BUILDDIR>>
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| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 21400
Build-Time: 149
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 914
Job: r-cran-hdf5r_1.3.6+dfsg-1
Machine Architecture: armhf
Package: r-cran-hdf5r
Package-Time: 1087
Source-Version: 1.3.6+dfsg-1
Space: 21400
Status: successful
Version: 1.3.6+dfsg-1
--------------------------------------------------------------------------------
Finished at 2022-09-28T07:26:17Z
Build needed 00:18:07, 21400k disk space