r-cran-hdf5r →
1.3.4+dfsg-1 →
armhf → 2021-09-25 21:04:35
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| r-cran-hdf5r 1.3.4+dfsg-1 (armhf) Sat, 25 Sep 2021 20:37:38 +0000 |
+==============================================================================+
Package: r-cran-hdf5r
Version: 1.3.4+dfsg-1
Source Version: 1.3.4+dfsg-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-588ae061-f8c5-4505-abac-507a37d47b82' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.8 MB in 26s (999 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-hdf5r' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-hdf5r.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-hdf5r.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1239 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main r-cran-hdf5r 1.3.4+dfsg-1 (dsc) [2158 B]
Get:2 http://172.17.0.1/private bookworm-staging/main r-cran-hdf5r 1.3.4+dfsg-1 (tar) [1232 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main r-cran-hdf5r 1.3.4+dfsg-1 (diff) [4428 B]
Fetched 1239 kB in 0s (3457 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-hdf5r-603SMJ/r-cran-hdf5r-1.3.4+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-hdf5r-603SMJ' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-i7JP5x/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-i7JP5x/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-i7JP5x/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-i7JP5x/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-i7JP5x/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-i7JP5x/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-i7JP5x/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-i7JP5x/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2678 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 85 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-i7JP5x/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.1 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12488 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-r6, r-cran-bit64, libhdf5-dev
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-r6, r-cran-bit64, libhdf5-dev
dpkg-deb: building package 'sbuild-build-depends-r-cran-hdf5r-dummy' in '/<<BUILDDIR>>/resolver-i7JP5x/apt_archive/sbuild-build-depends-r-cran-hdf5r-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-cran-hdf5r-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-i7JP5x/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-i7JP5x/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-i7JP5x/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-i7JP5x/apt_archive ./ Sources [522 B]
Get:5 copy:/<<BUILDDIR>>/resolver-i7JP5x/apt_archive ./ Packages [602 B]
Fetched 2457 B in 1s (3238 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-cran-hdf5r build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev binutils
binutils-arm-linux-gnueabihf binutils-common bsdextrautils ca-certificates
cpp-10 dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core g++-10 gcc-10
gcc-10-base gcc-11-base gettext gettext-base gfortran gfortran-10 groff-base
hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0
libalgorithm-c3-perl libarchive-zip-perl libasan6 libatomic1
libb-hooks-endofscope-perl libb-hooks-op-check-perl libbinutils libblas-dev
libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcc1-0 libclass-c3-perl
libclass-load-perl libclass-load-xs-perl libctf-nobfd0 libctf0
libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl
libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgcc-10-dev libgcc-s1 libgfortran-10-dev
libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libncursesw6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev libreadline8 librtmp1 libsigsegv2 libsm6 libssh2-1
libstdc++-10-dev libstdc++6 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libsz2 libtcl8.6
libthai-data libthai0 libtiff5 libtimedate-perl libtinfo6 libtk8.6 libtool
libtry-tiny-perl libubsan1 libuchardet0 liburi-perl libvariable-magic-perl
libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config
po-debconf r-base-core r-base-dev r-cran-bit r-cran-bit64 r-cran-r6
sensible-utils ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales
debtags dh-make postgresql-client-common gcc-10-doc gettext-doc
libasprintf-dev libgettextpo-dev gfortran-doc gfortran-10-doc
libcoarrays-dev groff liblapack-doc libhdf5-doc icu-doc liblzma-doc
ncurses-doc libscalar-number-perl readline-doc libstdc++-10-doc tcl8.6 tk8.6
libtool-doc gcj-jdk libwww-perl libcurl4-gnutls-dev m4-doc apparmor less
www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib
r-base-html texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-cran-testthat
r-cran-roxygen2 r-cran-knitr r-cran-rmarkdown r-cran-ggplot2 r-cran-scales
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-testthat
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gcc-11-base gettext
gettext-base gfortran gfortran-10 groff-base hdf5-helpers icu-devtools
intltool-debian libaec-dev libaec0 libalgorithm-c3-perl libarchive-zip-perl
libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libsz2 libtcl8.6
libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6
libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config po-debconf
r-base-core r-base-dev r-cran-bit r-cran-bit64 r-cran-r6
sbuild-build-depends-r-cran-hdf5r-dummy sensible-utils ucf unzip x11-common
xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
binutils binutils-arm-linux-gnueabihf binutils-common cpp-10 g++-10 gcc-10
gcc-10-base libasan6 libatomic1 libbinutils libcc1-0 libctf-nobfd0 libctf0
libgcc-10-dev libgcc-s1 libgomp1 libncursesw6 libreadline8 libstdc++-10-dev
libstdc++6 libtinfo6 libubsan1
22 upgraded, 183 newly installed, 0 to remove and 63 not upgraded.
Need to get 129 MB of archives.
After this operation, 263 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-i7JP5x/apt_archive ./ sbuild-build-depends-r-cran-hdf5r-dummy 0.invalid.0 [896 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf libtinfo6 armhf 6.2+20201114-4 [328 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libncursesw6 armhf 6.2+20201114-4 [105 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-1 [135 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-4+rpi1 [205 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-4+rpi1 [36.2 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-4+rpi1 [467 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf libreadline8 armhf 8.1-2 [146 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-4+rpi1 [87.7 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-4+rpi1 [8200 B]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-4+rpi1 [2043 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-4+rpi1 [795 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf g++-10 armhf 10.3.0-9+rpi1 [7352 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf libstdc++-10-dev armhf 10.3.0-9+rpi1 [1756 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf gcc-10 armhf 10.3.0-9+rpi1 [13.4 MB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf libgcc-10-dev armhf 10.3.0-9+rpi1 [680 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-4+rpi1 [37.8 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libctf0 armhf 2.37-5+rpi1 [79.5 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libctf-nobfd0 armhf 2.37-5+rpi1 [138 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf binutils-arm-linux-gnueabihf armhf 2.37-5+rpi1 [2165 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf libbinutils armhf 2.37-5+rpi1 [411 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf binutils armhf 2.37-5+rpi1 [62.2 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf binutils-common armhf 2.37-5+rpi1 [2286 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf cpp-10 armhf 10.3.0-9+rpi1 [6692 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf gcc-10-base armhf 10.3.0-9+rpi1 [206 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf openssl armhf 1.1.1l-1 [815 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.1 [192 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.1 [1056 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf unzip armhf 6.0-26 [151 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-2 [80.3 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [353 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.3-3 [27.2 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.9.0-3 [151 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf libcurl4 armhf 7.74.0-1.3 [305 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.68.4-1 [1197 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-4+rpi1 [235 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf libthai-data all 0.1.28-4.1 [171 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-1+b1 [39.7 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf libthai0 armhf 0.1.28-4.1 [51.4 kB]
Get:102 http://172.17.0.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.48.10+ds1-1 [184 kB]
Get:103 http://172.17.0.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.48.10+ds1-1 [66.6 kB]
Get:104 http://172.17.0.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.48.10+ds1-1 [56.8 kB]
Get:105 http://172.17.0.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.11+dfsg-1 [894 kB]
Get:106 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.7-2 [44.1 kB]
Get:107 http://172.17.0.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:108 http://172.17.0.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf libtiff5 armhf 4.2.0-1 [268 kB]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:111 http://172.17.0.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:112 http://172.17.0.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:113 http://172.17.0.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.11.1-1 [681 kB]
Get:114 http://172.17.0.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:115 http://172.17.0.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:116 http://172.17.0.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:117 http://172.17.0.1/private bookworm-staging/main armhf r-base-core armhf 4.1.1-2 [25.3 MB]
Get:118 http://172.17.0.1/private bookworm-staging/main armhf libgfortran-10-dev armhf 10.3.0-9+rpi1 [276 kB]
Get:119 http://172.17.0.1/private bookworm-staging/main armhf gfortran-10 armhf 10.3.0-9+rpi1 [7201 kB]
Get:120 http://172.17.0.1/private bookworm-staging/main armhf gfortran armhf 4:10.2.1-1+rpi1 [1428 B]
Get:121 http://172.17.0.1/private bookworm-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:122 http://172.17.0.1/private bookworm-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:123 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.2+20201114-4 [79.7 kB]
Get:124 http://172.17.0.1/private bookworm-staging/main armhf libncurses-dev armhf 6.2+20201114-4 [288 kB]
Get:125 http://172.17.0.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.2+20201114-4 [940 B]
Get:126 http://172.17.0.1/private bookworm-staging/main armhf libreadline-dev armhf 8.1-2 [121 kB]
Get:127 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.6-4 [240 kB]
Get:128 http://172.17.0.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.0.6-4 [67.8 kB]
Get:129 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.36-2 [197 kB]
Get:130 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.36-2 [187 kB]
Get:131 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-posix2 armhf 10.36-2 [48.7 kB]
Get:132 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.36-2 [626 kB]
Get:133 http://172.17.0.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:134 http://172.17.0.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:135 http://172.17.0.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:136 http://172.17.0.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:137 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:138 http://172.17.0.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:139 http://172.17.0.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:140 http://172.17.0.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2 [219 kB]
Get:141 http://172.17.0.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:142 http://172.17.0.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:143 http://172.17.0.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:144 http://172.17.0.1/private bookworm-staging/main armhf xauth armhf 1:1.1-1 [36.6 kB]
Get:145 http://172.17.0.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:146 http://172.17.0.1/private bookworm-staging/main armhf r-base-dev all 4.1.1-2 [4488 B]
Get:147 http://172.17.0.1/private bookworm-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:148 http://172.17.0.1/private bookworm-staging/main armhf libswitch-perl all 2.17-2.1 [20.0 kB]
Get:149 http://172.17.0.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:150 http://172.17.0.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:151 http://172.17.0.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:152 http://172.17.0.1/private bookworm-staging/main armhf libio-html-perl all 1.004-2 [16.1 kB]
Get:153 http://172.17.0.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:154 http://172.17.0.1/private bookworm-staging/main armhf liburi-perl all 5.08-1 [90.6 kB]
Get:155 http://172.17.0.1/private bookworm-staging/main armhf libhttp-message-perl all 6.33-1 [80.1 kB]
Get:156 http://172.17.0.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB]
Get:157 http://172.17.0.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:158 http://172.17.0.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.110-1.1 [10.8 kB]
Get:159 http://172.17.0.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:160 http://172.17.0.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:161 http://172.17.0.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:162 http://172.17.0.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:163 http://172.17.0.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:164 http://172.17.0.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:165 http://172.17.0.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get:166 http://172.17.0.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.39-1 [21.9 kB]
Get:167 http://172.17.0.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:168 http://172.17.0.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b4 [14.3 kB]
Get:169 http://172.17.0.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:170 http://172.17.0.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get:171 http://172.17.0.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:172 http://172.17.0.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:173 http://172.17.0.1/private bookworm-staging/main armhf libmro-compat-perl all 0.13-1 [12.2 kB]
Get:174 http://172.17.0.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB]
Get:175 http://172.17.0.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.005-1 [7212 B]
Get:176 http://172.17.0.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:177 http://172.17.0.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:178 http://172.17.0.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:179 http://172.17.0.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get:180 http://172.17.0.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get:181 http://172.17.0.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB]
Get:182 http://172.17.0.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get:183 http://172.17.0.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.5 kB]
Get:184 http://172.17.0.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2014-2 [802 kB]
Get:185 http://172.17.0.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB]
Get:186 http://172.17.0.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB]
Get:187 http://172.17.0.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:188 http://172.17.0.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.74.0-1.3 [301 kB]
Get:189 http://172.17.0.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-7+b1 [58.9 kB]
Get:190 http://172.17.0.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:191 http://172.17.0.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:192 http://172.17.0.1/private bookworm-staging/main armhf hdf5-helpers armhf 1.10.6+repack-5 [40.4 kB]
Get:193 http://172.17.0.1/private bookworm-staging/main armhf libaec0 armhf 1.0.5-2 [19.2 kB]
Get:194 http://172.17.0.1/private bookworm-staging/main armhf libsz2 armhf 1.0.5-2 [7380 B]
Get:195 http://172.17.0.1/private bookworm-staging/main armhf libaec-dev armhf 1.0.5-2 [17.5 kB]
Get:196 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.6+repack-5 [1208 kB]
Get:197 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.6+repack-5 [130 kB]
Get:198 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-fortran-102 armhf 1.10.6+repack-5 [93.2 kB]
Get:199 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.6+repack-5 [79.5 kB]
Get:200 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.6+repack-5 [51.2 kB]
Get:201 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.6+repack-5 [37.4 kB]
Get:202 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-dev armhf 1.10.6+repack-5 [2162 kB]
Get:203 http://172.17.0.1/private bookworm-staging/main armhf r-cran-bit armhf 4.0.4+dfsg-1 [418 kB]
Get:204 http://172.17.0.1/private bookworm-staging/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB]
Get:205 http://172.17.0.1/private bookworm-staging/main armhf r-cran-r6 all 2.5.0-1 [104 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking libatomic1:armhf (11.2.0-4+rpi1) over (10.2.1-6+rpi1) ...
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invoke-rc.d: could not determine current runlevel
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Setting up libx11-6:armhf (2:1.7.2-2) ...
Setting up libharfbuzz0b:armhf (2.7.4-1) ...
Setting up libgfortran-10-dev:armhf (10.3.0-9+rpi1) ...
Setting up libmro-compat-perl (0.13-1) ...
Setting up binutils-arm-linux-gnueabihf (2.37-5+rpi1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2+b3) ...
Setting up libsub-exporter-perl (0.988-1) ...
Setting up libhttp-message-perl (6.33-1) ...
Setting up libeval-closure-perl (0.14-1) ...
Setting up libhdf5-hl-100:armhf (1.10.6+repack-5) ...
Setting up automake (1:1.16.4-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up libstdc++-10-dev:armhf (10.3.0-9+rpi1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl (4.17-7+b1) ...
Setting up binutils (2.37-5+rpi1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.6+repack-5) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up libhdf5-fortran-102:armhf (1.10.6+repack-5) ...
Setting up libdist-checkconflicts-perl (0.11-1.1) ...
Setting up libxt6:armhf (1:1.2.0-1) ...
Setting up gcc-10 (10.3.0-9+rpi1) ...
Setting up xauth (1:1.1-1) ...
Setting up libhdf5-hl-fortran-100:armhf (1.10.6+repack-5) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up g++-10 (10.3.0-9+rpi1) ...
Setting up libmodule-implementation-perl (0.09-1.1) ...
Setting up libpackage-stash-perl (0.39-1) ...
Setting up libtk8.6:armhf (8.6.11.1-1) ...
Setting up libpango-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up debhelper (13.5.1) ...
Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ...
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up libhdf5-dev (1.10.6+repack-5) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up gfortran-10 (10.3.0-9+rpi1) ...
Setting up libpackage-deprecationmanager-perl (0.17-1.1) ...
Setting up libdevel-overloadinfo-perl (0.005-1) ...
Setting up libclass-load-xs-perl (0.10-1+b4) ...
Setting up libpangoft2-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libb-hooks-endofscope-perl (0.24-1.1) ...
Setting up libpangocairo-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libmoose-perl (2.2014-2) ...
Setting up gfortran (4:10.2.1-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up r-base-core (4.1.1-2) ...
Creating config file /etc/R/Renviron with new version
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up r-cran-r6 (2.5.0-1) ...
Setting up r-base-dev (4.1.1-2) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up r-cran-bit (4.0.4+dfsg-1) ...
Setting up r-cran-bit64 (4.0.5-1) ...
Setting up dh-r (20210816) ...
Setting up sbuild-build-depends-r-cran-hdf5r-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-13+rpi1) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-9+rpi1 gcc-10_10.3.0-9+rpi1 libc6-dev_2.31-13+rpi1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.2.4 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1+rpi1 base-passwd_3.5.51 bash_5.1-2 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-1 bsdutils_1:2.36.1-8 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-9+rpi1 dash_0.5.11+git20200708+dd9ef66-5 dctrl-tools_2.24-3 debconf_1.5.77 debhelper_13.5.1 debianutils_4.11.2 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.2-2 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-9+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-9+rpi1 gcc-10-base_10.3.0-9+rpi1 gcc-11-base_11.2.0-4+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.3.0-22+rpi1 gettext_0.21-4 gettext-base_0.21-4 gfortran_4:10.2.1-1+rpi1 gfortran-10_10.3.0-9+rpi1 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-7 gzip_1.10-4 hdf5-helpers_1.10.6+repack-5 hostname_3.23 icu-devtools_67.1-7 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libaec-dev_1.0.5-2 libaec0_1.0.5-2 libalgorithm-c3-perl_0.11-1 libapt-pkg6.0_2.2.4 libarchive-zip-perl_1.68-1 libasan6_11.2.0-4+rpi1 libassuan0_2.5.3-7.1 libatomic1_11.2.0-4+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libb-hooks-endofscope-perl_0.24-1.1 libb-hooks-op-check-perl_0.22-1+b4 libbinutils_2.37-5+rpi1 libblas-dev_3.9.0-3 libblas3_3.9.0-3 libblkid1_2.36.1-8 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.31-13+rpi1 libc-dev-bin_2.31-13+rpi1 libc6_2.31-13+rpi1 libc6-dev_2.31-13+rpi1 libcairo2_1.16.0-5 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-4+rpi1 libclass-c3-perl_0.35-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-1+b4 libcom-err2_1.46.2-2 libcrypt-dev_1:4.4.18-4 libcrypt1_1:4.4.18-4 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl3-gnutls_7.74.0-1.3 libcurl4_7.74.0-1.3 libdata-optlist-perl_0.110-1.1 libdatrie1_0.2.13-1+b1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.1 libdeflate0_1.7-2 libdevel-callchecker-perl_0.008-1+b2 libdevel-globaldestruction-perl_0.14-1.1 libdevel-overloadinfo-perl_0.005-1 libdevel-stacktrace-perl_2.0400-1 libdist-checkconflicts-perl_0.11-1.1 libdpkg-perl_1.20.9+rpi1 libdynaloader-functions-perl_0.003-1.1 libelf1_0.185-2 libencode-locale-perl_1.05-1.1 libeval-closure-perl_0.14-1 libexpat1_2.4.1-2 libext2fs2_1.46.2-2 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.12.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.4+dfsg-1 libfribidi0_1.0.8-2 libgcc-10-dev_10.3.0-9+rpi1 libgcc-s1_11.2.0-4+rpi1 libgcrypt20_1.8.7-6 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran-10-dev_10.3.0-9+rpi1 libgfortran5_11.2.0-4+rpi1 libglib2.0-0_2.68.4-1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-5 libgomp1_11.2.0-4+rpi1 libgpg-error0_1.38-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-6 libharfbuzz0b_2.7.4-1 libhdf5-103-1_1.10.6+repack-5 libhdf5-cpp-103-1_1.10.6+repack-5 libhdf5-dev_1.10.6+repack-5 libhdf5-fortran-102_1.10.6+repack-5 libhdf5-hl-100_1.10.6+repack-5 libhdf5-hl-cpp-100_1.10.6+repack-5 libhdf5-hl-fortran-100_1.10.6+repack-5 libhogweed6_3.7.3-1 libhttp-date-perl_6.05-1 libhttp-message-perl_6.33-1 libice6_2:1.0.10-1 libicu-dev_67.1-7 libicu67_67.1-7 libidn2-0_2.3.0-5 libio-html-perl_1.004-2 libisl23_0.23-1 libjbig0_2.1-3.1+b2 libjpeg-dev_1:2.0.6-4 libjpeg62-turbo_1:2.0.6-4 libjpeg62-turbo-dev_1:2.0.6-4 libk5crypto3_1.18.3-6 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-6 libkrb5support0_1.18.3-6 libksba8_1.5.0-3 liblapack-dev_3.9.0-3 liblapack3_3.9.0-3 libldap-2.4-2_2.4.57+dfsg-3 liblocale-gettext-perl_1.07-4+b1 liblwp-mediatypes-perl_6.04-1 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.3-3 libmodule-implementation-perl_0.09-1.1 libmodule-runtime-conflicts-perl_0.003-1.1 libmodule-runtime-perl_0.016-1 libmoose-perl_2.2014-2 libmount1_2.36.1-8 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmro-compat-perl_0.13-1 libnamespace-clean-perl_0.27-1 libncurses-dev_6.2+20201114-4 libncurses5-dev_6.2+20201114-4 libncurses6_6.2+20201114-4 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpackage-deprecationmanager-perl_0.17-1.1 libpackage-stash-perl_0.39-1 libpackage-stash-xs-perl_0.29-1+b2 libpam-modules_1.4.0-9 libpam-modules-bin_1.4.0-9 libpam-runtime_1.4.0-9 libpam0g_1.4.0-9 libpango-1.0-0_1.48.10+ds1-1 libpangocairo-1.0-0_1.48.10+ds1-1 libpangoft2-1.0-0_1.48.10+ds1-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libparams-classify-perl_0.015-1+b3 libparams-util-perl_1.102-1+b1 libpcre16-3_2:8.39-13 libpcre2-16-0_10.36-2 libpcre2-32-0_10.36-2 libpcre2-8-0_10.36-2 libpcre2-dev_10.36-2 libpcre2-posix2_10.36-2 libpcre3_2:8.39-13 libpcre3-dev_2:8.39-13 libpcre32-3_2:8.39-13 libpcrecpp0v5_2:8.39-13 libperl5.32_5.32.1-4+deb11u1 libpipeline1_1.5.3-1 libpixman-1-0_0.40.0-1 libpng-dev_1.6.37-3 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.2 libreadline-dev_8.1-2 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsm6_2:1.2.3-1 libsmartcols1_2.36.1-8 libsqlite3-0_3.34.1-3 libss2_1.46.2-2 libssh2-1_1.9.0-3 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 libsub-exporter-perl_0.988-1 libsub-exporter-progressive-perl_0.001013-1 libsub-identify-perl_0.14-1+b3 libsub-install-perl_0.928-1.1 libsub-name-perl_0.26-1+b1 libsub-override-perl_0.09-2 libswitch-perl_2.17-2.1 libsystemd0_247.3-6+rpi1 libsz2_1.0.5-2 libtasn1-6_4.16.0-2 libtcl8.6_8.6.11+dfsg-1 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libthai-data_0.1.28-4.1 libthai0_0.1.28-4.1 libtiff5_4.2.0-1 libtimedate-perl_2.3300-2 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtk8.6_8.6.11.1-1 libtool_2.4.6-15 libtry-tiny-perl_0.30-1 libubsan1_11.2.0-4+rpi1 libuchardet0_0.0.7-1 libudev1_247.3-6+rpi1 libunistring2_0.9.10-4 liburi-perl_5.08-1 libuuid1_2.36.1-8 libvariable-magic-perl_0.62-1+b3 libwebp6_0.6.1-2.1 libwww-curl-perl_4.17-7+b1 libwww-curl-simple-perl_0.100191-2 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1 libxcb-render0_1.14-3 libxcb-shm0_1.14-3 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.2-2 libxml2_2.9.12+dfsg-5 libxmuu1_2:1.1.2-2+b3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.2.0-1 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.2-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-8 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 netbase_6.3 openssl_1.1.1l-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-4+deb11u1 perl-base_5.32.1-4+deb11u1 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 r-base-core_4.1.1-2 r-base-dev_4.1.1-2 r-cran-bit_4.0.4+dfsg-1 r-cran-bit64_4.0.5-1 r-cran-r6_2.5.0-1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-hdf5r-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.17 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 tzdata_2021a-1 ucf_3.0043 unzip_6.0-26 util-linux_2.36.1-8 x11-common_1:7.7+23 xauth_1:1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2 zip_3.0-12 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.vJ6wUSJv/trustedkeys.kbx': General error
gpgv: Signature made Mon Sep 20 11:18:39 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-cran-hdf5r_1.3.4+dfsg-1.dsc
dpkg-source: info: extracting r-cran-hdf5r in /<<BUILDDIR>>/r-cran-hdf5r-1.3.4+dfsg
dpkg-source: info: unpacking r-cran-hdf5r_1.3.4+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-cran-hdf5r_1.3.4+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hdf5path.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-588ae061-f8c5-4505-abac-507a37d47b82
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-cran-hdf5r
dpkg-buildpackage: info: source version 1.3.4+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.4+dfsg'
dh_auto_clean
rm -f src/Wrapper_auto_*
rm -f src/const_export.c src/const_export.h src/datatype_export.c src/datatype_export.h src/export_auto.h
rm -f config.log config.status src/HelperStructs.h src/Makevars
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.4+dfsg'
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
configure.ac:8: warning: The macro `AC_HAVE_LIBRARY' is obsolete.
configure.ac:8: You should run autoupdate.
./lib/autoconf/libs.m4:138: AC_HAVE_LIBRARY is expanded from...
inst/m4/ax_lib_hdf5.m4:96: AX_LIB_HDF5 is expanded from...
configure.ac:8: the top level
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-cran-hdf5r/ -a -O--buildsystem=R
I: R packages needed for DEP8: testthat
I: R Package: hdf5r Version: 1.3.4
I: Building using R version 4.1.1-2
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Mon, 20 Sep 2021 12:37:32 +0200
mkdir -p /<<BUILDDIR>>/r-cran-hdf5r-1.3.4\+dfsg/debian/r-cran-hdf5r/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-cran-hdf5r-1.3.4\+dfsg/debian/r-cran-hdf5r/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 20 Sep 2021 12:37:32 +0200'"
* installing *source* package 'hdf5r' ...
file 'inst/doc/hdf5r.html' is missing
files 'configure', 'src/Makevars.in' have the wrong MD5 checksums
** using staged installation
checking for a sed that does not truncate output... /bin/sed
checking for gawk... no
checking for mawk... mawk
checking for grep that handles long lines and -e... /bin/grep
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for h5cc... /usr/bin/h5cc
checking for HDF5 libraries... yes (version 1.10.6)
checking for hdf5.h... yes
checking for H5Fcreate in -lhdf5... yes
checking for hdf5_hl.h... yes
checking for H5LTpath_valid in -lhdf5_hl... yes
checking for main in -lhdf5_hl... yes
checking for matching HDF5 Fortran wrapper... /usr/bin/h5fc
Found hdf5 with version: 1.10.6
checking for ggrep... /bin/grep
checking whether /bin/grep accepts -o... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.4+dfsg/src'
cp 1_10_3/*.c 1_10_3/*.h .
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c const_export.c -o const_export.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c datatype_export.c -o datatype_export.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5A.c -o Wrapper_auto_H5A.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5.c -o Wrapper_auto_H5.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5D.c -o Wrapper_auto_H5D.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5DS.c -o Wrapper_auto_H5DS.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5E.c -o Wrapper_auto_H5E.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5F.c -o Wrapper_auto_H5F.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5G.c -o Wrapper_auto_H5G.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5I.c -o Wrapper_auto_H5I.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5IM.c -o Wrapper_auto_H5IM.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5L.c -o Wrapper_auto_H5L.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5LT.c -o Wrapper_auto_H5LT.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5O.c -o Wrapper_auto_H5O.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5P.c -o Wrapper_auto_H5P.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5R.c -o Wrapper_auto_H5R.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5S.c -o Wrapper_auto_H5S.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5TB.c -o Wrapper_auto_H5TB.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5T.c -o Wrapper_auto_H5T.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5Z.c -o Wrapper_auto_H5Z.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5FDcore.c -o Wrapper_auto_H5FDcore.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5FDfamily.c -o Wrapper_auto_H5FDfamily.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5FDlog.c -o Wrapper_auto_H5FDlog.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5FDsec2.c -o Wrapper_auto_H5FDsec2.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_auto_H5FDstdio.c -o Wrapper_auto_H5FDstdio.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c convert.c -o convert.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hdf5r_init.c -o hdf5r_init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c H5Error.c -o H5Error.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c H5ls.c -o H5ls.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -D__USE_MINGW_ANSI_STDIO -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Wrapper_manual_H5T.c -o Wrapper_manual_H5T.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o hdf5r.so const_export.o datatype_export.o Wrapper_auto_H5A.o Wrapper_auto_H5.o Wrapper_auto_H5D.o Wrapper_auto_H5DS.o Wrapper_auto_H5E.o Wrapper_auto_H5F.o Wrapper_auto_H5G.o Wrapper_auto_H5I.o Wrapper_auto_H5IM.o Wrapper_auto_H5L.o Wrapper_auto_H5LT.o Wrapper_auto_H5O.o Wrapper_auto_H5P.o Wrapper_auto_H5R.o Wrapper_auto_H5S.o Wrapper_auto_H5TB.o Wrapper_auto_H5T.o Wrapper_auto_H5Z.o Wrapper_auto_H5FDcore.o Wrapper_auto_H5FDfamily.o Wrapper_auto_H5FDlog.o Wrapper_auto_H5FDsec2.o Wrapper_auto_H5FDstdio.o convert.o hdf5r_init.o H5Error.o H5ls.o Wrapper_manual_H5T.o -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lpthread -lsz -lz -ldl -lm -L. -lhdf5_hl -lhdf5 -lz -lm -IPKG_CPPFLAGS -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.4+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.4+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.4+dfsg/src'
installing to /<<BUILDDIR>>/r-cran-hdf5r-1.3.4+dfsg/debian/r-cran-hdf5r/usr/lib/R/site-library/00LOCK-r-cran-hdf5r-1.3.4+dfsg/00new/hdf5r/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hdf5r)
rm -f /<<BUILDDIR>>/r-cran-hdf5r-1.3.4\+dfsg/debian/r-cran-hdf5r/usr/lib/R/site-library/hdf5r/LICENSE
W: Ignoring specified R dependency: R (>= 3.2.2)
I: Using r-cran-testthat for Recommends:testthat
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
W: Cannot find a debian package for Suggests:nycflights13
I: Using r-cran-reshape2 for Suggests:reshape2
I: Using r-cran-formatr for Suggests:formatR
I: Using r-cran-r6 for Imports:R6
I: Using r-cran-bit64 for Imports:bit64
I: Use r-cran-hdf5r as Debian binary package for variables substitution
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.4+dfsg'
dh_install
find debian -name m4 -type d | xargs rm -rf
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.4+dfsg'
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.4+dfsg'
dh_fixperms
find debian \( -name "*.txt" -o -name "*.R" -o -name "*.h" -o -name "*.csv" -o -name "*.brew" -o -name "*.Rmd" -o -name README \) -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-hdf5r-1.3.4+dfsg'
dh_missing -a -O--buildsystem=R
dh_dwz -a -a -O--buildsystem=R
dh_strip -a -a -O--buildsystem=R
dh_makeshlibs -a -a -O--buildsystem=R
dh_shlibdeps -a -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-hdf5r-dbgsym' in '../r-cran-hdf5r-dbgsym_1.3.4+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-cran-hdf5r' in '../r-cran-hdf5r_1.3.4+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-cran-hdf5r_1.3.4+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-09-25T21:04:28Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-hdf5r_1.3.4+dfsg-1_armhf.changes:
----------------------------------------
Format: 1.8
Date: Mon, 20 Sep 2021 12:37:32 +0200
Source: r-cran-hdf5r
Binary: r-cran-hdf5r r-cran-hdf5r-dbgsym
Architecture: armhf
Version: 1.3.4+dfsg-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-cran-hdf5r - GNU R interface to the 'HDF5' binary data format
Changes:
r-cran-hdf5r (1.3.4+dfsg-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* Standards-Version: 4.6.0 (routine-update)
* Enable Testsuite: autopkgtest-pkg-r by providing hook
Checksums-Sha1:
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Checksums-Sha256:
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fccaf427ad34c6aaf6a34aa5829ca13947df2684680470efa9d875c5d94dccbd 9959 r-cran-hdf5r_1.3.4+dfsg-1_armhf.buildinfo
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Files:
208b82a346388083407f501df012e82e 391408 debug optional r-cran-hdf5r-dbgsym_1.3.4+dfsg-1_armhf.deb
f71ee5eabd96558661d92b408b933552 9959 gnu-r optional r-cran-hdf5r_1.3.4+dfsg-1_armhf.buildinfo
d7909a0d3ddd4206b2fc321819f91a69 2157012 gnu-r optional r-cran-hdf5r_1.3.4+dfsg-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-hdf5r-dbgsym_1.3.4+dfsg-1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 391408 bytes: control archive=540 bytes.
394 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-hdf5r-dbgsym
Source: r-cran-hdf5r
Version: 1.3.4+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 465
Depends: r-cran-hdf5r (= 1.3.4+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for r-cran-hdf5r
Build-Ids: 25d5e617c6dff30ee0425b29eaafc7fbe2844826
drwxr-xr-x root/root 0 2021-09-20 10:37 ./
drwxr-xr-x root/root 0 2021-09-20 10:37 ./usr/
drwxr-xr-x root/root 0 2021-09-20 10:37 ./usr/lib/
drwxr-xr-x root/root 0 2021-09-20 10:37 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-09-20 10:37 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-09-20 10:37 ./usr/lib/debug/.build-id/25/
-rw-r--r-- root/root 465576 2021-09-20 10:37 ./usr/lib/debug/.build-id/25/d5e617c6dff30ee0425b29eaafc7fbe2844826.debug
drwxr-xr-x root/root 0 2021-09-20 10:37 ./usr/share/
drwxr-xr-x root/root 0 2021-09-20 10:37 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-09-20 10:37 ./usr/share/doc/r-cran-hdf5r-dbgsym -> r-cran-hdf5r
r-cran-hdf5r_1.3.4+dfsg-1_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 2157012 bytes: control archive=5348 bytes.
921 bytes, 18 lines control
24558 bytes, 255 lines md5sums
Package: r-cran-hdf5r
Version: 1.3.4+dfsg-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 4655
Depends: r-base-core (>= 4.1.1-2), r-api-4.0, r-cran-r6, r-cran-bit64, libc6 (>= 2.4), libhdf5-103-1, libhdf5-hl-100
Recommends: r-cran-testthat
Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-reshape2, r-cran-formatr
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=hdf5r
Description: GNU R interface to the 'HDF5' binary data format
'HDF5' is a data model, library and file format for storing
and managing large amounts of data. This package provides a nearly
feature complete, object oriented wrapper for the 'HDF5' API
<https://support.hdfgroup.org/HDF5/doc/RM/RM_H5Front.html> using R6 classes.
Additionally, functionality is added so that 'HDF5' objects behave very
similar to their corresponding R counterparts.
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| Post Build |
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| Cleanup |
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Purging /<<BUILDDIR>>
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| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 21252
Build-Time: 435
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1125
Job: r-cran-hdf5r_1.3.4+dfsg-1
Machine Architecture: armhf
Package: r-cran-hdf5r
Package-Time: 1610
Source-Version: 1.3.4+dfsg-1
Space: 21252
Status: successful
Version: 1.3.4+dfsg-1
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Finished at 2021-09-25T21:04:28Z
Build needed 00:26:50, 21252k disc space