r-cran-ape →
5.7-1 →
armhf → 2023-03-08 05:21:34
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| r-cran-ape 5.7-1 (armhf) Wed, 08 Mar 2023 04:48:06 +0000 |
+==============================================================================+
Package: r-cran-ape
Version: 5.7-1
Source Version: 5.7-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-9f17e5c1-f541-403e-b8f0-d9cf9a8a8634' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.7 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.5 MB]
Fetched 28.3 MB in 32s (877 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-ape' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-ape.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-ape.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1585 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-cran-ape 5.7-1 (dsc) [2100 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-cran-ape 5.7-1 (tar) [1578 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-cran-ape 5.7-1 (diff) [5428 B]
Fetched 1585 kB in 0s (3510 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-ape-jkp4Dz/r-cran-ape-5.7' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-ape-jkp4Dz' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-qfctfL/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-qfctfL/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-qfctfL/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-qfctfL/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-qfctfL/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-qfctfL/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-qfctfL/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-qfctfL/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2588 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 3 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-qfctfL/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12520 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-nlme, r-cran-lattice, r-cran-rcpp, r-cran-digest
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-nlme, r-cran-lattice, r-cran-rcpp, r-cran-digest
dpkg-deb: building package 'sbuild-build-depends-r-cran-ape-dummy' in '/<<BUILDDIR>>/resolver-qfctfL/apt_archive/sbuild-build-depends-r-cran-ape-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-cran-ape-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-qfctfL/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-qfctfL/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-qfctfL/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-qfctfL/apt_archive ./ Sources [529 B]
Get:5 copy:/<<BUILDDIR>>/resolver-qfctfL/apt_archive ./ Packages [608 B]
Fetched 2470 B in 1s (3180 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-cran-ape build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-12 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2
libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl
libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl
libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16
libpsl5 libreadline-dev libregexp-ipv6-perl librtmp1 libsm6 libssh2-1
libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtk8.6 libtool
libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7
libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db openssl pkg-config
pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-cran-digest
r-cran-lattice r-cran-littler r-cran-nlme r-cran-pkgkitten r-cran-rcpp ucf
unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-12-doc libcoarrays-dev groff liblapack-doc
low-memory-monitor icu-doc liblzma-doc ncurses-doc libscalar-number-perl
readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl
libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser
libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-cran-getopt
r-cran-inline
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libdevel-partialdump-perl
libgpm2 libpng-tools publicsuffix libltdl-dev libmail-sendmail-perl
r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-12 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2
libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl
libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl
libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16
libpsl5 libreadline-dev libregexp-ipv6-perl librtmp1 libsm6 libssh2-1
libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtk8.6 libtool
libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7
libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db openssl pkg-config
pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-cran-digest
r-cran-lattice r-cran-littler r-cran-nlme r-cran-pkgkitten r-cran-rcpp
sbuild-build-depends-r-cran-ape-dummy ucf unzip x11-common xauth xdg-utils
zip zlib1g-dev
0 upgraded, 178 newly installed, 0 to remove and 3 not upgraded.
Need to get 94.4 MB of archives.
After this operation, 285 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-qfctfL/apt_archive ./ sbuild-build-depends-r-cran-ape-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-5 [78.5 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.2-1 [1342 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.8-1 [1357 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.44-3 [95.3 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.44-3 [41.5 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-11 [156 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-3 [256 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-11 [495 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.4 [81.2 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1+b1 [571 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-11 [1204 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.4 [942 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-13 [207 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-28 [147 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.39-2 [258 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-4 [329 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-5 [1068 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.14.1-4 [315 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.14.1-4 [366 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-2 [112 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.4-2 [292 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.4-2 [690 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-7 [482 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.52.0-1 [60.6 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.88.1-1 [342 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.5-1+b1 [1203 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-14+rpi1 [238 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.14.1-4 [449 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1894 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.12+ds-1 [186 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.12+ds-1 [40.5 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.12+ds-1 [30.1 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.4-0.1 [242 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libtiff6 armhf 4.5.0-5 [293 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.2.2.20221110-2 [25.6 MB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-12-dev armhf 12.2.0-14+rpi1 [285 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf gfortran-12 armhf 12.2.0-14+rpi1 [7509 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:12.2.0-1+rpi1 [1432 B]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.4-2 [80.2 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.4-2 [291 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.4-2 [932 B]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.2-1.3 [123 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.42-1 [210 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.42-1 [201 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.42-1 [55.1 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.42-1 [648 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-15 [234 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-15 [225 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-15 [141 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-15 [576 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [901 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.39-2 [336 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.4.1-0.2 [246 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 72.1-3 [175 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 72.1-3 [9959 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.2.2.20221110-2 [4492 B]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.17-1 [90.4 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.44-1 [81.7 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.113-1 [10.6 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.989-1 [50.5 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2203-1 [794 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-2+b1 [12.2 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.88.1-1 [337 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-10 [55.8 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20230121 [37.9 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf r-cran-littler armhf 0.3.17-1 [92.5 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf littler all 0.3.17-1 [14.4 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf r-cran-digest armhf 0.6.31-1 [177 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-45-3 [1176 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf r-cran-nlme armhf 3.1.162-1 [2259 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcpp armhf 1.0.10-1 [2015 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 94.4 MB in 24s (3974 kB/s)
Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 12520 files and directories currently installed.)
Preparing to unpack .../000-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
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Preparing to unpack .../001-groff-base_1.22.4-9_armhf.deb ...
Unpacking groff-base (1.22.4-9) ...
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Preparing to unpack .../002-bsdextrautils_2.38.1-5_armhf.deb ...
Unpacking bsdextrautils (2.38.1-5) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../003-libpipeline1_1.5.7-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.7-1) ...
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Unpacking man-db (2.11.2-1) ...
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Unpacking openssl (3.0.8-1) ...
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Unpacking ca-certificates (20211016) ...
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Unpacking libmagic-mgc (1:5.44-3) ...
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Unpacking gettext-base (0.21-11) ...
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Preparing to unpack .../011-ucf_3.0043+nmu1_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0043+nmu1) ...
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Unpacking m4 (1.4.19-3) ...
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Unpacking autoconf (2.71-3) ...
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Preparing to unpack .../014-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
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Preparing to unpack .../015-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../016-autopoint_0.21-11_all.deb ...
Unpacking autopoint (0.21-11) ...
Selecting previously unselected package dctrl-tools.
Preparing to unpack .../017-dctrl-tools_2.24-3_armhf.deb ...
Unpacking dctrl-tools (2.24-3) ...
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Preparing to unpack .../018-libdebhelper-perl_13.11.4_all.deb ...
Unpacking libdebhelper-perl (13.11.4) ...
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Unpacking libtool (2.4.7-5) ...
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Unpacking dh-autoreconf (20) ...
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Unpacking libarchive-zip-perl (1.68-1) ...
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Unpacking libsub-override-perl (0.09-4) ...
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Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ...
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Unpacking dh-strip-nondeterminism (1.13.1-1) ...
Selecting previously unselected package libelf1:armhf.
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Unpacking libelf1:armhf (0.188-2.1+rpi1) ...
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Unpacking dwz (0.15-1) ...
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Unpacking libicu72:armhf (72.1-3) ...
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Unpacking zip (3.0-13) ...
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Unpacking unzip (6.0-28) ...
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Unpacking libpaper1:armhf (1.1.28) ...
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Unpacking libpaper-utils (1.1.28) ...
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Unpacking xdg-utils (1.1.3-4.1) ...
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Unpacking libblas3:armhf (3.11.0-2) ...
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Unpacking libexpat1:armhf (2.5.0-1) ...
Selecting previously unselected package libbrotli1:armhf.
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Unpacking libbrotli1:armhf (1.0.9-2+b3) ...
Selecting previously unselected package libpng16-16:armhf.
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Unpacking libpng16-16:armhf (1.6.39-2) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../042-libfreetype6_2.12.1+dfsg-4_armhf.deb ...
Unpacking libfreetype6:armhf (2.12.1+dfsg-4) ...
Selecting previously unselected package fonts-dejavu-core.
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Unpacking fonts-dejavu-core (2.37-5) ...
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Unpacking fontconfig-config (2.14.1-4) ...
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Unpacking libbsd0:armhf (0.11.7-2) ...
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Unpacking libcurl3-gnutls:armhf (7.88.1-1) ...
Selecting previously unselected package libwww-curl-perl:armhf.
Preparing to unpack .../167-libwww-curl-perl_4.17-10_armhf.deb ...
Unpacking libwww-curl-perl:armhf (4.17-10) ...
Selecting previously unselected package libwww-curl-simple-perl.
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Unpacking libwww-curl-simple-perl (0.100191-3) ...
Selecting previously unselected package dh-r.
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Unpacking dh-r (20230121) ...
Selecting previously unselected package r-cran-littler.
Preparing to unpack .../170-r-cran-littler_0.3.17-1_armhf.deb ...
Unpacking r-cran-littler (0.3.17-1) ...
Selecting previously unselected package littler.
Preparing to unpack .../171-littler_0.3.17-1_all.deb ...
Unpacking littler (0.3.17-1) ...
Selecting previously unselected package r-cran-digest.
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Unpacking r-cran-digest (0.6.31-1) ...
Selecting previously unselected package r-cran-lattice.
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Unpacking r-cran-lattice (0.20-45-3) ...
Selecting previously unselected package r-cran-nlme.
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Unpacking r-cran-nlme (3.1.162-1) ...
Selecting previously unselected package r-cran-pkgkitten.
Preparing to unpack .../175-r-cran-pkgkitten_0.2.2-2_all.deb ...
Unpacking r-cran-pkgkitten (0.2.2-2) ...
Selecting previously unselected package r-cran-rcpp.
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Unpacking r-cran-rcpp (1.0.10-1) ...
Selecting previously unselected package sbuild-build-depends-r-cran-ape-dummy.
Preparing to unpack .../177-sbuild-build-depends-r-cran-ape-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-r-cran-ape-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.5.0-1) ...
Setting up libpcrecpp0v5:armhf (2:8.39-15) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up libpixman-1-0:armhf (0.42.2-1) ...
Setting up libfile-which-perl (1.27-2) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.2-1) ...
Setting up libicu72:armhf (72.1-3) ...
Setting up liblerc4:armhf (4.0.0+ds-2) ...
Setting up bsdextrautils (2.38.1-5) ...
Setting up libpcre16-3:armhf (2:8.39-15) ...
Setting up libdynaloader-functions-perl (0.003-3) ...
Setting up libdatrie1:armhf (0.2.13-2+b2) ...
Setting up libmagic-mgc (1:5.44-3) ...
Setting up libclone-perl:armhf (0.46-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-3) ...
Setting up libglib2.0-0:armhf (2.74.5-1+b1) ...
No schema files found: doing nothing.
Setting up unzip (6.0-28) ...
Setting up libdebhelper-perl (13.11.4) ...
Setting up libbrotli1:armhf (1.0.9-2+b3) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libtry-tiny-perl (0.31-2) ...
Setting up libnghttp2-14:armhf (1.52.0-1) ...
Setting up libmagic1:armhf (1:5.44-3) ...
Setting up libdeflate0:armhf (1.14-1) ...
Setting up gettext-base (0.21-11) ...
Setting up m4 (1.4.19-3) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up file (1:5.44-3) ...
Setting up libjbig0:armhf (2.1-6.1) ...
Setting up libpcre2-16-0:armhf (10.42-1) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up zip (3.0-13) ...
Setting up libpackage-stash-xs-perl:armhf (0.30-1+b1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpcre2-32-0:armhf (10.42-1) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpkgconf3:armhf (1.8.1-1) ...
Setting up libalgorithm-c3-perl (0.11-2) ...
Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ...
Setting up libswitch-perl (2.17-3) ...
Setting up libx11-data (2:1.8.4-2) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.4-2) ...
Setting up libfribidi0:armhf (1.0.8-2.1) ...
Setting up libpng16-16:armhf (1.6.39-2) ...
Setting up libpcre32-3:armhf (2:8.39-15) ...
Setting up libvariable-magic-perl (0.63-1+b1) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ...
Setting up autopoint (0.21-11) ...
Setting up libb-hooks-op-check-perl:armhf (0.22-2+b1) ...
Setting up icu-devtools (72.1-3) ...
Setting up fonts-dejavu-core (2.37-5) ...
Setting up ucf (3.0043+nmu1) ...
Setting up pkgconf-bin (1.8.1-1) ...
Setting up libparams-util-perl (1.102-2+b1) ...
Setting up libgfortran5:armhf (12.2.0-14+rpi1) ...
Setting up autoconf (2.71-3) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libwebp7:armhf (1.2.4-0.1) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libregexp-ipv6-perl (0.03-3) ...
Setting up liblzma-dev:armhf (5.4.1-0.2) ...
Setting up libsub-name-perl:armhf (0.26-2+b1) ...
Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ...
Setting up libpcre2-posix3:armhf (10.42-1) ...
Setting up libtiff6:armhf (4.5.0-5) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libthai-data (0.1.29-1) ...
Setting up libdevel-globaldestruction-perl (0.14-4) ...
Setting up libssh2-1:armhf (1.10.0-3+b1) ...
Setting up libdevel-stacktrace-perl (2.0400-2) ...
Setting up openssl (3.0.8-1) ...
Setting up libbsd0:armhf (0.11.7-2) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libicu-dev:armhf (72.1-3) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.1+b1) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up liburi-perl (5.17-1) ...
Setting up libblas-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-5+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.4-2) ...
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-11) ...
Setting up libpcre2-dev:armhf (10.42-1) ...
Setting up libtool (2.4.7-5) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up libpcre3-dev:armhf (2:8.39-15) ...
Setting up fontconfig-config (2.14.1-4) ...
Setting up libpng-dev:armhf (1.6.39-2) ...
Setting up libjpeg-dev:armhf (1:2.1.5-2) ...
Setting up libcurl3-gnutls:armhf (7.88.1-1) ...
Setting up libgfortran-12-dev:armhf (12.2.0-14+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:armhf (8.2-1.3) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
Setting up gfortran-12 (12.2.0-14+rpi1) ...
Setting up libfreetype6:armhf (2.12.1+dfsg-4) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.113-1) ...
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-9) ...
Setting up libncurses5-dev:armhf (6.4-2) ...
Setting up libcurl4:armhf (7.88.1-1) ...
Setting up libx11-6:armhf (2:1.8.4-2) ...
Setting up libharfbuzz0b:armhf (6.0.0+dfsg-3) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.989-1) ...
Setting up libhttp-message-perl (6.44-1) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-10) ...
Setting up man-db (2.11.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:12.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1) ...
Setting up xauth (1:1.1.2-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up debhelper (13.11.4) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up libmoose-perl:armhf (2.2203-1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.14.1-4) ...
Setting up fontconfig (2.14.1-4) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Processing triggers for libc-bin (2.36-8+rpi1) ...
Setting up libpango-1.0-0:armhf (1.50.12+ds-1) ...
Setting up libcairo2:armhf (1.16.0-7) ...
Setting up libpangoft2-1.0-0:armhf (1.50.12+ds-1) ...
Setting up libpangocairo-1.0-0:armhf (1.50.12+ds-1) ...
Setting up r-base-core (4.2.2.20221110-2) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-lattice (0.20-45-3) ...
Setting up r-cran-nlme (3.1.162-1) ...
Setting up r-cran-pkgkitten (0.2.2-2) ...
Setting up r-cran-littler (0.3.17-1) ...
Setting up r-cran-rcpp (1.0.10-1) ...
Setting up r-base-dev (4.2.2.20221110-2) ...
Setting up littler (0.3.17-1) ...
Setting up r-cran-digest (0.6.31-1) ...
Setting up dh-r (20230121) ...
Setting up sbuild-build-depends-r-cran-ape-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.36-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.40-2+rpi1 dpkg-dev_1.21.20+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-8+rpi1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.0.12-1+rpi1+b1
Package versions: adduser_3.131 apt_2.5.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-11 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2+rpi1 binutils-arm-linux-gnueabihf_2.40-2+rpi1 binutils-common_2.40-2+rpi1 bsdextrautils_2.38.1-5 bsdutils_1:2.38.1-5 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-14+rpi1 dash_0.5.12-2 dctrl-tools_2.24-3 debconf_1.5.82 debhelper_13.11.4 debianutils_5.7-0.4 dh-autoreconf_20 dh-r_20230121 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1 dpkg_1.21.20+rpi1 dpkg-dev_1.21.20+rpi1 dwz_0.15-1 e2fsprogs_1.46.6-1 fakeroot_1.29-1 file_1:5.44-3 findutils_4.9.0-4 fontconfig_2.14.1-4 fontconfig-config_2.14.1-4 fonts-dejavu-core_2.37-5 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-11 gettext-base_0.21-11 gfortran_4:12.2.0-1+rpi1 gfortran-12_12.2.0-14+rpi1 gnupg_2.2.40-1 gnupg-l10n_2.2.40-1 gnupg-utils_2.2.40-1 gpg_2.2.40-1 gpg-agent_2.2.40-1 gpg-wks-client_2.2.40-1 gpg-wks-server_2.2.40-1 gpgconf_2.2.40-1 gpgsm_2.2.40-1 gpgv_2.2.40-1 grep_3.8-5 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23+nmu1 icu-devtools_72.1-3 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-1 libacl1_2.3.1-3 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.5.6 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.5-5 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.0.9-1 libaudit1_1:3.0.9-1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.40-2+rpi1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.38.1-5 libbrotli1_1.0.9-2+b3 libbsd0_0.11.7-2 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.36-8+rpi1 libc-dev-bin_2.36-8+rpi1 libc6_2.36-8+rpi1 libc6-dev_2.36-8+rpi1 libcairo2_1.16.0-7 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-3 libcap2-bin_1:2.66-3 libcc1-0_12.2.0-14+rpi1 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2+b1 libclone-perl_0.46-1 libcom-err2_1.46.6-1 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libctf-nobfd0_2.40-2+rpi1 libctf0_2.40-2+rpi1 libcurl3-gnutls_7.88.1-1 libcurl4_7.88.1-1 libdata-optlist-perl_0.113-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.267 libdebhelper-perl_13.11.4 libdeflate0_1.14-1 libdevel-callchecker-perl_0.008-2 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-2 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.21.20+rpi1 libdynaloader-functions-perl_0.003-3 libelf1_0.188-2.1+rpi1 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 libexpat1_2.5.0-1 libext2fs2_1.46.6-1 libfakeroot_1.29-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libfontconfig1_2.14.1-4 libfreetype6_2.12.1+dfsg-4 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.2.0-14+rpi1 libgcc-s1_12.2.0-14+rpi1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran-12-dev_12.2.0-14+rpi1 libgfortran5_12.2.0-14+rpi1 libglib2.0-0_2.74.5-1+b1 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-5 libgomp1_12.2.0-14+rpi1 libgpg-error0_1.46-1 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20.1-1 libharfbuzz0b_6.0.0+dfsg-3 libhogweed6_3.8.1-2 libhttp-date-perl_6.05-2 libhttp-message-perl_6.44-1 libice6_2:1.0.10-1 libicu-dev_72.1-3 libicu72_72.1-3 libidn2-0_2.3.3-1 libio-html-perl_1.004-3 libisl23_0.25-1 libjansson4_2.14-2 libjbig0_2.1-6.1 libjpeg-dev_1:2.1.5-2 libjpeg62-turbo_1:2.1.5-2 libjpeg62-turbo-dev_1:2.1.5-2 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libksba8_1.6.3-2 liblapack-dev_3.11.0-2 liblapack3_3.11.0-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblerc4_4.0.0+ds-2 liblwp-mediatypes-perl_6.04-2 liblz4-1_1.9.4-1+rpi1 liblzma-dev_5.4.1-0.2 liblzma5_5.4.1-0.2 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmd0_1.0.4-2 libmodule-implementation-perl_0.09-2 libmodule-runtime-conflicts-perl_0.003-2 libmodule-runtime-perl_0.016-2 libmoose-perl_2.2203-1 libmount1_2.38.1-5 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libmro-compat-perl_0.15-2 libnamespace-clean-perl_0.27-2 libncurses-dev_6.4-2 libncurses5-dev_6.4-2 libncurses6_6.4-2 libncursesw6_6.4-2 libnettle8_3.8.1-2 libnghttp2-14_1.52.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-2 libpackage-deprecationmanager-perl_0.18-1 libpackage-stash-perl_0.40-1 libpackage-stash-xs-perl_0.30-1+b1 libpam-cap_1:2.66-3 libpam-modules_1.5.2-6 libpam-modules-bin_1.5.2-6 libpam-runtime_1.5.2-6 libpam0g_1.5.2-6 libpango-1.0-0_1.50.12+ds-1 libpangocairo-1.0-0_1.50.12+ds-1 libpangoft2-1.0-0_1.50.12+ds-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libparams-classify-perl_0.015-2+b1 libparams-util-perl_1.102-2+b1 libpcre16-3_2:8.39-15 libpcre2-16-0_10.42-1 libpcre2-32-0_10.42-1 libpcre2-8-0_10.42-1 libpcre2-dev_10.42-1 libpcre2-posix3_10.42-1 libpcre3_2:8.39-15 libpcre3-dev_2:8.39-15 libpcre32-3_2:8.39-15 libpcrecpp0v5_2:8.39-15 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpkgconf3_1.8.1-1 libpng-dev_1.6.39-2 libpng16-16_1.6.39-2 libpsl5_0.21.2-1 libreadline-dev_8.2-1.3 libreadline8_8.2-1.3 libregexp-ipv6-perl_0.03-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.4-1+b2 libsemanage-common_3.4-1 libsemanage2_3.4-1+b2 libsepol1_3.1-1 libsepol2_3.4-2 libsm6_2:1.2.3-1 libsmartcols1_2.38.1-5 libsqlite3-0_3.40.1-1 libss2_1.46.6-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.8-1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 libsub-exporter-perl_0.989-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3 libsub-install-perl_0.929-1 libsub-name-perl_0.26-2+b1 libsub-override-perl_0.09-4 libswitch-perl_2.17-3 libsystemd0_252.5-2+rpi1 libtasn1-6_4.19.0-2 libtcl8.6_8.6.13+dfsg-2 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff6_4.5.0-5 libtimedate-perl_2.3300-2 libtinfo6_6.4-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.13-2 libtool_2.4.7-5 libtry-tiny-perl_0.31-2 libubsan1_12.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_252.5-2+rpi1 libunistring2_1.0-2 liburi-perl_5.17-1 libuuid1_2.38.1-5 libvariable-magic-perl_0.63-1+b1 libwebp7_1.2.4-0.1 libwww-curl-perl_4.17-10 libwww-curl-simple-perl_0.100191-3 libx11-6_2:1.8.4-2 libx11-data_2:1.8.4-2 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.1+b1 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1 libxxhash0_0.8.1-1 libzstd1_1.5.4+dfsg2-3 linux-libc-dev_6.0.12-1+rpi1+b1 littler_0.3.17-1 login_1:4.13+dfsg1-1 logsave_1.46.6-1 lsb-base_11.4+rpi1 m4_1.4.19-3 make_4.3-4.1 man-db_2.11.2-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-5 nano_7.2-1 ncurses-base_6.4-2 ncurses-bin_6.4-2 netbase_6.4 openssl_3.0.8-1 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 pinentry-curses_1.2.1-1 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 r-base-core_4.2.2.20221110-2 r-base-dev_4.2.2.20221110-2 r-cran-digest_0.6.31-1 r-cran-lattice_0.20-45-3 r-cran-littler_0.3.17-1 r-cran-nlme_3.1.162-1 r-cran-pkgkitten_0.2.2-2 r-cran-rcpp_1.0.10-1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-ape-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.17+nmu1 sgml-base_1.31 sysvinit-utils_3.06-2 tar_1.34+dfsg-1 tzdata_2022g-5 ucf_3.0043+nmu1 unzip_6.0-28 util-linux_2.38.1-5 util-linux-extra_2.38.1-5 x11-common_1:7.7+23 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1 xz-utils_5.4.1-0.2 zip_3.0-13 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Sun Feb 26 11:13:43 2023 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-cran-ape_5.7-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-cran-ape in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-cran-ape_5.7.orig.tar.gz
dpkg-source: info: unpacking r-cran-ape_5.7-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-9f17e5c1-f541-403e-b8f0-d9cf9a8a8634
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-cran-ape
dpkg-buildpackage: info: source version 5.7-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-cran-ape/ -a -O--buildsystem=R
I: R packages needed for DEP8: phangorn
I: R Package: ape Version: 5.7
I: Building using R version 4.2.2.20221110-2
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Sun, 26 Feb 2023 11:45:28 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-ape/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-ape/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 26 Feb 2023 11:45:28 +0100'"
* installing *source* package 'ape' ...
** package 'ape' successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c BIONJ.c -o BIONJ.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c NNI.c -o NNI.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c SPR.c -o SPR.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c additive.c -o additive.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ape.c -o ape.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bNNI.c -o bNNI.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bionjs.c -o bionjs.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bipartition.c -o bipartition.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c bitsplits.c -o bitsplits.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c delta_plot.c -o delta_plot.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dist_dna.c -o dist_dna.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dist_nodes.c -o dist_nodes.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ewLasso.c -o ewLasso.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c heap.c -o heap.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mat_expo.c -o mat_expo.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c me.c -o me.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c me_balanced.c -o me_balanced.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c me_ols.c -o me_ols.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mvr.c -o mvr.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mvrs.c -o mvrs.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nj.c -o nj.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c njs.c -o njs.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pic.c -o pic.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c plot_phylo.c -o plot_phylo.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c prop_part.cpp -o prop_part.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rTrait.c -o rTrait.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c read_dna.c -o read_dna.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c reorder_Rcpp.cpp -o reorder_Rcpp.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c reorder_phylo.c -o reorder_phylo.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c treePop.c -o treePop.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tree_build.c -o tree_build.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tree_phylo.c -o tree_phylo.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c triangMtd.c -o triangMtd.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c triangMtds.c -o triangMtds.o
gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ultrametric.c -o ultrametric.o
g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-z,relro -o ape.so BIONJ.o NNI.o RcppExports.o SPR.o additive.o ape.o bNNI.o bionjs.o bipartition.o bitsplits.o delta_plot.o dist_dna.o dist_nodes.o ewLasso.o heap.o mat_expo.o me.o me_balanced.o me_ols.o mvr.o mvrs.o nj.o njs.o pic.o plot_phylo.o prop_part.o rTrait.o read_dna.o reorder_Rcpp.o reorder_phylo.o treePop.o tree_build.o tree_phylo.o triangMtd.o triangMtds.o ultrametric.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
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installing to /<<PKGBUILDDIR>>/debian/r-cran-ape/usr/lib/R/site-library/00LOCK-r-cran-ape-5.7/00new/ape/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ape)
W: Ignoring specified R dependency: R (>= 3.2.0)
I: Using r-cran-phangorn for Recommends:phangorn
I: Using r-cran-gee for Suggests:gee
I: Using r-cran-expm for Suggests:expm
I: Using r-cran-igraph for Suggests:igraph
I: Using r-cran-nlme for Imports:nlme
I: Using r-cran-lattice for Imports:lattice
I: Using r-cran-rcpp for Imports:Rcpp (>= 0.12.0)
I: Using r-cran-digest for Imports:digest
I: Using r-cran-rcpp for LinkingTo:Rcpp
I: Use r-cran-ape as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-ape' in '../r-cran-ape_5.7-1_armhf.deb'.
dpkg-deb: building package 'r-cran-ape-dbgsym' in '../r-cran-ape-dbgsym_5.7-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-cran-ape_5.7-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../r-cran-ape_5.7-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-03-08T05:21:26Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-ape_5.7-1_armhf.changes:
-------------------------------
Format: 1.8
Date: Sun, 26 Feb 2023 11:45:28 +0100
Source: r-cran-ape
Binary: r-cran-ape r-cran-ape-dbgsym
Architecture: armhf
Version: 5.7-1
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-cran-ape - GNU R package for Analyses of Phylogenetics and Evolution
Changes:
r-cran-ape (5.7-1) unstable; urgency=low
.
* Team upload.
* New upstream release.
* Standards-Version: 4.6.2 (routine-update)
* dh-update-R to update Build-Depends (routine-update)
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-ape-dbgsym_5.7-1_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 617440 bytes: control archive=528 bytes.
372 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-ape-dbgsym
Source: r-cran-ape
Version: 5.7-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 642
Depends: r-cran-ape (= 5.7-1)
Section: debug
Priority: optional
Description: debug symbols for r-cran-ape
Build-Ids: 61c846c7b41cd264924598ca5440fb5f6e520105
drwxr-xr-x root/root 0 2023-02-26 10:45 ./
drwxr-xr-x root/root 0 2023-02-26 10:45 ./usr/
drwxr-xr-x root/root 0 2023-02-26 10:45 ./usr/lib/
drwxr-xr-x root/root 0 2023-02-26 10:45 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-02-26 10:45 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-02-26 10:45 ./usr/lib/debug/.build-id/61/
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drwxr-xr-x root/root 0 2023-02-26 10:45 ./usr/share/
drwxr-xr-x root/root 0 2023-02-26 10:45 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-02-26 10:45 ./usr/share/doc/r-cran-ape-dbgsym -> r-cran-ape
r-cran-ape_5.7-1_armhf.deb
--------------------------
new Debian package, version 2.0.
size 2866016 bytes: control archive=2800 bytes.
1690 bytes, 28 lines control
4646 bytes, 59 lines md5sums
Package: r-cran-ape
Version: 5.7-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 3609
Depends: r-base-core (>= 4.2.2.20221110-2), r-api-4.0, r-cran-nlme, r-cran-lattice, r-cran-rcpp (>= 0.12.0), r-cran-digest, libc6 (>= 2.29), libgcc-s1 (>= 3.5), liblapack3 | liblapack.so.3, libstdc++6 (>= 11)
Recommends: r-cran-phangorn
Suggests: r-cran-gee, r-cran-expm, r-cran-igraph, clustalw, muscle, phyml, t-coffee
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=ape
Description: GNU R package for Analyses of Phylogenetics and Evolution
This package provides functions for reading, writing, plotting, and
manipulating phylogenetic trees, analyses of comparative data in a
phylogenetic framework, ancestral character analyses, analyses of
diversification and macroevolution, computing distances from DNA
sequences, reading and writing nucleotide sequences as well as
importing from BioConductor, and several tools such as Mantel's test,
generalized skyline plots, graphical exploration of phylogenetic data
(alex, trex, kronoviz), estimation of absolute evolutionary rates and
clock-like trees using mean path lengths and penalized likelihood,
dating trees with non-contemporaneous sequences, translating DNA into
AA sequences, and assessing sequence alignments. Phylogeny estimation
can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods,
and several methods handling incomplete distance matrices (NJ*,
BIONJ*, MVR*, and the corresponding triangle method). Some functions
call external applications (PhyML, Clustal, T-Coffee, Muscle) whose
results are returned into R.
drwxr-xr-x root/root 0 2023-02-26 10:45 ./
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-rw-r--r-- root/root 11794 2023-02-26 10:45 ./usr/lib/R/site-library/ape/INDEX
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 11700
Build-Time: 558
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1382
Job: r-cran-ape_5.7-1
Machine Architecture: armhf
Package: r-cran-ape
Package-Time: 2000
Source-Version: 5.7-1
Space: 11700
Status: successful
Version: 5.7-1
--------------------------------------------------------------------------------
Finished at 2023-03-08T05:21:26Z
Build needed 00:33:20, 11700k disc space