r-cran-ape →
5.1-2 →
armhf → 2018-09-18 05:19:24
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| r-cran-ape 5.1-2 (armhf) Tue, 18 Sep 2018 04:50:37 +0000 |
+==============================================================================+
Package: r-cran-ape
Version: 5.1-2
Source Version: 5.1-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-892f9efb-5417-45f1-82b7-98174162470f' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.0 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.8 MB]
Fetched 23.8 MB in 32s (737 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-ape' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-ape.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-ape.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 793 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-cran-ape 5.1-2 (dsc) [2041 B]
Get:2 http://172.17.0.1/private buster-staging/main r-cran-ape 5.1-2 (tar) [786 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-cran-ape 5.1-2 (diff) [4816 B]
Fetched 793 kB in 0s (3296 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-ape-n0rirF/r-cran-ape-5.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-ape-n0rirF' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-OI3Owd/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-OI3Owd/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-OI3Owd/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-OI3Owd/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-OI3Owd/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-OI3Owd/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-OI3Owd/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-OI3Owd/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2715 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 71 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-OI3Owd/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15689 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-cran-nlme, r-cran-lattice, r-cran-rcpp (>= 0.12.0)
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-cran-nlme, r-cran-lattice, r-cran-rcpp (>= 0.12.0)
dpkg-deb: building package 'sbuild-build-depends-r-cran-ape-dummy' in '/<<BUILDDIR>>/resolver-OI3Owd/apt_archive/sbuild-build-depends-r-cran-ape-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-cran-ape-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-OI3Owd/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-OI3Owd/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-OI3Owd/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-OI3Owd/apt_archive ./ Sources [527 B]
Get:5 copy:/<<BUILDDIR>>/resolver-OI3Owd/apt_archive ./ Packages [609 B]
Fetched 2469 B in 1s (3614 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-cran-ape build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dbus dbus-user-session e2fsprogs-l10n libnss-systemd libpam-systemd
libsasl2-modules systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils bzip2 cpp-8
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core g++-8 gcc-7-base gcc-8
gcc-8-base gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0
gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian
libarchive-zip-perl libasan5 libatomic1 libblas-dev libblas3 libbsd0
libbz2-1.0 libbz2-dev libcairo2 libcc1-0 libcroco3 libcurl4 libdatrie1
libelf1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgcc-8-dev libgcc1 libgfortran-8-dev libgfortran4
libgfortran5 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin
libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgomp1 libgraphite2-3
libgraphite2-dev libgssapi-krb5-2 libharfbuzz-dev libharfbuzz-gobject0
libharfbuzz-icu0 libharfbuzz0b libice6 libicu-dev libicu-le-hb-dev
libicu-le-hb0 libicu60 libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblapack-dev liblapack3 liblzma-dev libmagic-mgc libmagic1 libmpdec2
libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
libpcre3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0
libpng-dev libpsl5 libpython3-stdlib libpython3.6-minimal
libpython3.6-stdlib libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1
libstdc++-8-dev libstdc++6 libswitch-perl libtcl8.6 libthai-data libthai0
libtiff5 libtimedate-perl libtk8.6 libtool libubsan1 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db mime-support
pkg-config po-debconf python3 python3-distutils python3-lib2to3
python3-minimal python3.6 python3.6-minimal r-base-core r-base-dev
r-cran-lattice r-cran-littler r-cran-nlme r-cran-pkgkitten r-cran-rcpp ucf
unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation bzip2-doc gcc-8-locales debtags dh-make gcc-8-doc libstdc++6-8-dbg
libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan5-dbg
liblsan0-dbg libtsan0-dbg libubsan1-dbg libmpx2-dbg libquadmath0-dbg
gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-8-doc
libgfortran5-dbg libcoarrays-dev groff liblapack-doc libglib2.0-doc
libgraphite2-utils krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc
readline-doc libstdc++-8-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc
apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv python3.6-venv python3.6-doc binfmt-support ess r-doc-info
| r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
r-cran-getopt r-cran-inline
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl
shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix
libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core gcc-7-base gettext gettext-base gfortran
gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools
intltool-debian libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev
libcairo2 libcroco3 libcurl4 libdatrie1 libelf1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-8-dev libgfortran4 libgfortran5
libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data
libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev
libgssapi-krb5-2 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0
libharfbuzz0b libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblzma-dev
libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev
libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5
libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib
libpython3.6-minimal libpython3.6-stdlib libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libswitch-perl libtcl8.6 libthai-data libthai0
libtiff5 libtimedate-perl libtk8.6 libtool libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db mime-support
pkg-config po-debconf python3 python3-distutils python3-lib2to3
python3-minimal python3.6 python3.6-minimal r-base-core r-base-dev
r-cran-lattice r-cran-littler r-cran-nlme r-cran-pkgkitten r-cran-rcpp
sbuild-build-depends-r-cran-ape-dummy ucf unzip x11-common xauth xdg-utils
zip zlib1g-dev
The following packages will be upgraded:
bzip2 cpp-8 g++-8 gcc-8 gcc-8-base libasan5 libatomic1 libbz2-1.0 libcc1-0
libgcc-8-dev libgcc1 libgomp1 libpcre3 libstdc++-8-dev libstdc++6 libubsan1
16 upgraded, 148 newly installed, 0 to remove and 55 not upgraded.
Need to get 116 MB/120 MB of archives.
After this operation, 282 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-OI3Owd/apt_archive ./ sbuild-build-depends-r-cran-ape-dummy 0.invalid.0 [900 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 8.2.0-6+rpi1 [30.2 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf gcc-8-base armhf 8.2.0-6+rpi1 [187 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:8.2.0-6+rpi1 [36.5 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 8.2.0-6+rpi1 [63.9 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 8.2.0-6+rpi1 [8104 B]
Get:9 http://172.17.0.1/private buster-staging/main armhf libasan5 armhf 8.2.0-6+rpi1 [317 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libubsan1 armhf 8.2.0-6+rpi1 [104 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf g++-8 armhf 8.2.0-6+rpi1 [5939 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libstdc++-8-dev armhf 8.2.0-6+rpi1 [1562 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libgcc-8-dev armhf 8.2.0-6+rpi1 [595 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf gcc-8 armhf 8.2.0-6+rpi1 [5841 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf cpp-8 armhf 8.2.0-6+rpi1 [5474 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 8.2.0-6+rpi1 [325 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-2 [1161 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.6-1 [565 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.6-1 [1383 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.5-3 [36.2 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf bzip2 armhf 1.0.6-9 [46.1 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libbz2-1.0 armhf 1.0.6-9 [43.0 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.6-1 [1638 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.6-1 [234 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.5-3 [19.7 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.5-3 [24.1 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libpcre3 armhf 2:8.39-11+rpi1 [313 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-7 [117 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9.3 [12.2 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-1.1 [771 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-7 [434 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-2 [94.4 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-4 [547 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.042-1 [20.1 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.042-1 [12.1 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.12-1 [69.1 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.8.8-2+rpi1 [860 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-7 [1218 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.5 [981 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-1 [103 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.0-5 [280 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.0-5 [325 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13-3 [132 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.6-1 [298 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.6-1 [688 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13-3 [107 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13-3 [98.4 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.15.12-1 [589 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.32.0-1 [71.7 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-1 [52.5 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.61.0-1 [282 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-1 [1518 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.0-5 [403 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3 [61.9 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.28-1 [170 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-1 [35.8 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.28-1 [50.9 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-1 [165 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-1 [60.8 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-1 [50.8 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.8+dfsg-4 [863 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.9-6 [225 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.8-4 [657 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.5.1-1 [23.6 MB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-6+rpi1 [206 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libgfortran-8-dev armhf 8.2.0-6+rpi1 [248 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf gfortran-8 armhf 8.2.0-6+rpi1 [5813 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:8.1.0-1+rpi1 [1424 B]
Get:102 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-1 [111 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-1 [1577 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20180714-1 [279 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.1+20180714-1 [940 B]
Get:106 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-11+rpi1 [234 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-11+rpi1 [227 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-11+rpi1 [150 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-11+rpi1 [565 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-2+rpi1 [275 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-9 [27.7 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 60.2-6 [166 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 1.8.8-2+rpi1 [641 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-gobject0 armhf 1.8.8-2+rpi1 [648 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libgirepository-1.0-1 armhf 1.56.1-1 [77.6 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf gir1.2-glib-2.0 armhf 1.56.1-1 [142 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf gir1.2-harfbuzz-0.0 armhf 1.8.8-2+rpi1 [655 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.56.1-2 [2671 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.56.1-2 [1694 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.6-1 [79.1 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.6-1 [144 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.56.1-2 [1733 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.56.1-2 [2807 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf libgraphite2-dev armhf 1.3.12-1 [22.6 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-dev armhf 1.8.8-2+rpi1 [930 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb-dev armhf 1.0.3+git161113-5 [28.3 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 60.2-6 [8643 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.5.1-1 [4476 B]
Get:133 http://172.17.0.1/private buster-staging/main armhf libfile-which-perl all 1.22-1 [14.6 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf dh-r all 20180912 [33.6 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf r-cran-littler armhf 0.3.4-1 [338 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf littler all 0.3.4-1 [13.2 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf r-cran-lattice armhf 0.20-35-1+b2 [1138 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf r-cran-nlme armhf 3.1.137-1+b1 [2202 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf r-cran-pkgkitten all 0.1.4-2 [22.4 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf r-cran-rcpp armhf 0.12.18-1 [3436 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package groff-base.
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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Setting up libglib2.0-bin (2.56.1-2) ...
Setting up libasan5:armhf (8.2.0-6+rpi1) ...
Setting up libgfortran5:armhf (8.2.0-6+rpi1) ...
Setting up libgraphite2-dev:armhf (1.3.12-1) ...
Setting up libx11-data (2:1.6.6-1) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up autopoint (0.19.8.1-7) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up libfile-stripnondeterminism-perl (0.042-1) ...
Setting up libubsan1:armhf (8.2.0-6+rpi1) ...
Setting up libpaper1:armhf (1.1.24+nmu5) ...
Creating config file /etc/papersize with new version
Setting up libpython3.6-stdlib:armhf (3.6.6-1) ...
Setting up libpaper-utils (1.1.24+nmu5) ...
Setting up libpcre3-dev:armhf (2:8.39-11+rpi1) ...
Setting up fontconfig-config (2.13.0-5) ...
Installing new version of config file /etc/fonts/fonts.conf ...
Setting up python3.6 (3.6.6-1) ...
Setting up libgfortran4:armhf (7.3.0-19) ...
Setting up libharfbuzz0b:armhf (1.8.8-2+rpi1) ...
Setting up autoconf (2.69-11) ...
Setting up libthai0:armhf (0.1.28-1) ...
Setting up file (1:5.34-2) ...
Setting up libkrb5support0:armhf (1.16-2) ...
Setting up libncurses5-dev:armhf (6.1+20180714-1) ...
Setting up libblas3:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up automake (1:1.16.1-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libreadline-dev:armhf (7.0-5) ...
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up man-db (2.8.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libgcc-8-dev:armhf (8.2.0-6+rpi1) ...
Setting up libpng-dev:armhf (1.6.34-2+rpi1) ...
Setting up libgfortran-8-dev:armhf (8.2.0-6+rpi1) ...
Setting up libxcb1:armhf (1.13-3) ...
Setting up libharfbuzz-gobject0:armhf (1.8.8-2+rpi1) ...
Setting up libtool (2.4.6-4) ...
Setting up libpython3-stdlib:armhf (3.6.5-3) ...
Setting up libfontconfig1:armhf (2.13.0-5) ...
Setting up libstdc++-8-dev:armhf (8.2.0-6+rpi1) ...
Setting up libsm6:armhf (2:1.2.2-1+b3) ...
Setting up libk5crypto3:armhf (1.16-2) ...
Setting up libxcb-render0:armhf (1.13-3) ...
Setting up python3 (3.6.5-3) ...
Setting up libblas-dev:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up liblapack3:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libx11-6:armhf (2:1.6.6-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2) ...
Setting up gcc-8 (8.2.0-6+rpi1) ...
Setting up g++-8 (8.2.0-6+rpi1) ...
Setting up gir1.2-harfbuzz-0.0:armhf (1.8.8-2+rpi1) ...
Setting up libxcb-shm0:armhf (1.13-3) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libkrb5-3:armhf (1.16-2) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up python3-lib2to3 (3.6.6-1) ...
Setting up python3-distutils (3.6.6-1) ...
Setting up fontconfig (2.13.0-5) ...
Regenerating fonts cache... done.
Setting up liblapack-dev:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libglib2.0-dev-bin (2.56.1-2) ...
Setting up gfortran-8 (8.2.0-6+rpi1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libglib2.0-dev:armhf (2.56.1-2) ...
Setting up libgssapi-krb5-2:armhf (1.16-2) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libpango-1.0-0:armhf (1.42.4-1) ...
Setting up gfortran (4:8.1.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.15.12-1) ...
Setting up libtk8.6:armhf (8.6.8-4) ...
Setting up libcurl4:armhf (7.61.0-1) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-1) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-1) ...
Setting up dh-autoreconf (19) ...
Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Setting up dh-strip-nondeterminism (0.042-1) ...
Setting up libicu60:armhf (60.2-6) ...
Setting up libharfbuzz-icu0:armhf (1.8.8-2+rpi1) ...
Setting up libicu-le-hb-dev:armhf (1.0.3+git161113-5) ...
Setting up r-base-core (3.5.1-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-littler (0.3.4-1) ...
Setting up littler (0.3.4-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up r-cran-pkgkitten (0.1.4-2) ...
Setting up r-cran-rcpp (0.12.18-1) ...
Setting up icu-devtools (60.2-6) ...
Setting up gettext (0.19.8.1-7) ...
Setting up r-cran-lattice (0.20-35-1+b2) ...
Setting up r-cran-nlme (3.1.137-1+b1) ...
Setting up libicu-dev (60.2-6) ...
Setting up r-base-dev (3.5.1-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libharfbuzz-dev:armhf (1.8.8-2+rpi1) ...
Setting up po-debconf (1.0.20) ...
Setting up debhelper (11.3.5) ...
Setting up dh-r (20180912) ...
Setting up sbuild-build-depends-r-cran-ape-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-5+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-2+rpi1 dpkg-dev_1.19.0.5 g++-8_8.2.0-6+rpi1 gcc-8_8.2.0-6+rpi1 libc6-dev_2.27-5+rpi1 libstdc++-8-dev_8.2.0-6+rpi1 libstdc++6_8.2.0-6+rpi1 linux-libc-dev_4.16.16-2+rpi1
Package versions: adduser_3.117 apt_1.6.3 autoconf_2.69-11 automake_1:1.16.1-1.1 autopoint_0.19.8.1-7 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-2+rpi1 binutils-arm-linux-gnueabihf_2.31.1-2+rpi1 binutils-common_2.31.1-2+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:8.1.0-1+rpi1 cpp-8_8.2.0-6+rpi1 dash_0.5.8-2.10 dbus_1.12.10-1 dbus-user-session_1.12.10-1 dctrl-tools_2.24-2 debconf_1.5.69 debhelper_11.3.5 debianutils_4.8.6 dh-autoreconf_19 dh-r_20180912 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dirmngr_2.2.9-1+rpi1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.3-1 e2fsprogs_1.44.3-1 e2fsprogs-l10n_1.44.3-1 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20171230-2 fontconfig_2.13.0-5 fontconfig-config_2.13.0-5 fonts-dejavu-core_2.37-1 g++_4:8.1.0-1+rpi1 g++-8_8.2.0-6+rpi1 gcc_4:8.1.0-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-7-base_7.3.0-19 gcc-8_8.2.0-6+rpi1 gcc-8-base_8.2.0-6+rpi1 gettext_0.19.8.1-7 gettext-base_0.19.8.1-7 gfortran_4:8.1.0-1+rpi1 gfortran-8_8.2.0-6+rpi1 gir1.2-glib-2.0_1.56.1-1 gir1.2-harfbuzz-0.0_1.8.8-2+rpi1 gnupg_2.2.9-1+rpi1 gnupg-agent_2.2.9-1+rpi1 gnupg-l10n_2.2.9-1+rpi1 gnupg-utils_2.2.9-1+rpi1 gpg_2.2.9-1+rpi1 gpg-agent_2.2.9-1+rpi1 gpg-wks-client_2.2.9-1+rpi1 gpg-wks-server_2.2.9-1+rpi1 gpgconf_2.2.9-1+rpi1 gpgsm_2.2.9-1+rpi1 gpgv_2.2.9-1+rpi1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2 hostname_3.20 icu-devtools_60.2-6 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.13-8 libapt-pkg5.0_1.6.3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-6+rpi1 libassuan0_2.5.1-2 libatomic1_8.2.0-6+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.31.1-2+rpi1 libblas-dev_3.8.0-1 libblas3_3.8.0-1 libblkid1_2.32.1-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libbz2-dev_1.0.6-9 libc-bin_2.27-5+rpi1 libc-dev-bin_2.27-5+rpi1 libc6_2.27-5+rpi1 libc6-dev_2.27-5+rpi1 libcairo2_1.15.12-1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-6+rpi1 libcom-err2_1.44.3-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2 libcryptsetup4_2:1.7.5-1 libcurl4_7.61.0-1 libdatrie1_0.2.12-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.10-1 libdebconfclient0_0.244 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.92-1+rpi1 libdrm2_2.4.92-1+rpi1 libelf1_0.170-0.5 libexpat1_2.2.5-3 libext2fs2_1.44.3-1 libfakeroot_1.23-1 libfdisk1_2.32.1-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfile-which-perl_1.22-1 libfontconfig1_2.13.0-5 libfreetype6_2.8.1-2 libfribidi0_1.0.5-3 libgcc-8-dev_8.2.0-6+rpi1 libgcc1_1:8.2.0-6+rpi1 libgcrypt20_1.8.3-1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libgfortran-8-dev_8.2.0-6+rpi1 libgfortran4_7.3.0-19 libgfortran5_8.2.0-6+rpi1 libgirepository-1.0-1_1.56.1-1 libglib2.0-0_2.56.1-2 libglib2.0-bin_2.56.1-2 libglib2.0-data_2.56.1-2 libglib2.0-dev_2.56.1-2 libglib2.0-dev-bin_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.19-1 libgomp1_8.2.0-6+rpi1 libgpg-error0_1.32-1 libgraphite2-3_1.3.12-1 libgraphite2-dev_1.3.12-1 libgssapi-krb5-2_1.16-2 libharfbuzz-dev_1.8.8-2+rpi1 libharfbuzz-gobject0_1.8.8-2+rpi1 libharfbuzz-icu0_1.8.8-2+rpi1 libharfbuzz0b_1.8.8-2+rpi1 libhogweed4_3.4-1 libice6_2:1.0.9-2 libicu-dev_60.2-6 libicu-le-hb-dev_1.0.3+git161113-5 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.4-2.2 libip4tc0_1.6.2-1.1 libisl19_0.20-1 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16-2 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libkmod2_25-1 libkrb5-3_1.16-2 libkrb5support0_1.16-2 libksba8_1.3.5-2 liblapack-dev_3.8.0-1 liblapack3_3.8.0-1 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 liblz4-1_1.8.2-1+rpi1 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses-dev_6.1+20180714-1 libncurses5_6.1+20180714-1 libncurses5-dev_6.1+20180714-1 libncurses6_6.1+20180714-1 libncursesw5_6.1+20180714-1 libncursesw6_6.1+20180714-1 libnettle6_3.4-1 libnghttp2-14_1.32.0-1 libnpth0_1.6-1 libnss-systemd_239-7 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_239-7 libpam0g_1.1.8-3.7 libpango-1.0-0_1.42.4-1 libpangocairo-1.0-0_1.42.4-1 libpangoft2-1.0-0_1.42.4-1 libpaper-utils_1.1.24+nmu5 libpaper1_1.1.24+nmu5 libpcre16-3_2:8.39-11+rpi1 libpcre3_2:8.39-11+rpi1 libpcre3-dev_2:8.39-11+rpi1 libpcre32-3_2:8.39-11+rpi1 libpcrecpp0v5_2:8.39-11+rpi1 libperl5.24_5.24.1-7 libperl5.26_5.26.2-7 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libplymouth4_0.9.3-3 libpng-dev_1.6.34-2+rpi1 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libpsl5_0.20.2-1 libpython3-stdlib_3.6.5-3 libpython3.6-minimal_3.6.6-1 libpython3.6-stdlib_3.6.6-1 libreadline-dev_7.0-5 libreadline7_7.0-5 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.2-1+b3 libsmartcols1_2.32.1-0.1 libsqlite3-0_3.24.0-1 libss2_1.44.3-1 libssh2-1_1.8.0-2 libssl1.1_1.1.0h-4 libstdc++-8-dev_8.2.0-6+rpi1 libstdc++6_8.2.0-6+rpi1 libswitch-perl_2.17-2 libsystemd0_239-7 libtasn1-6_4.13-3 libtcl8.6_8.6.8+dfsg-4 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff5_4.0.9-6 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180714-1 libtinfo6_6.1+20180714-1 libtk8.6_8.6.8-4 libtool_2.4.6-4 libubsan1_8.2.0-6+rpi1 libudev1_239-7 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32.1-0.1 libx11-6_2:1.6.6-1 libx11-data_2:1.6.6-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13-3 libxcb-shm0_1.13-3 libxcb1_1.13-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.3.4+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.16.16-2+rpi1 littler_0.3.4-1 login_1:4.5-1.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.2.1-1.2 makedev_2.3.1-93 man-db_2.8.4-2 mawk_1.3.3-17 mime-support_3.61 mount_2.32.1-0.1 multiarch-support_2.27-5+rpi1 nano_2.9.8-1 ncurses-base_6.1+20180714-1 ncurses-bin_6.1+20180714-1 netbase_5.4 openssl_1.1.0h-4 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.26.2-7 perl-base_5.26.2-7 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-7 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 python3_3.6.5-3 python3-distutils_3.6.6-1 python3-lib2to3_3.6.6-1 python3-minimal_3.6.5-3 python3.6_3.6.6-1 python3.6-minimal_3.6.6-1 r-base-core_3.5.1-1 r-base-dev_3.5.1-1 r-cran-lattice_0.20-35-1+b2 r-cran-littler_0.3.4-1 r-cran-nlme_3.1.137-1+b1 r-cran-pkgkitten_0.1.4-2 r-cran-rcpp_0.12.18-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-ape-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 systemd_239-7 systemd-sysv_239-7 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 ucf_3.0038 udev_239-7 unzip_6.0-21 util-linux_2.32.1-0.1 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Sep 16 08:30:45 2018 UTC
gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: issuer "bob.dybian@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-cran-ape_5.1-2.dsc
dpkg-source: info: extracting r-cran-ape in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-cran-ape_5.1.orig.tar.gz
dpkg-source: info: unpacking r-cran-ape_5.1-2.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-892f9efb-5417-45f1-82b7-98174162470f
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-cran-ape
dpkg-buildpackage: info: source version 5.1-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build r-cran-ape-5.1
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_testdir -O--buildsystem=R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_testdir -a -O--buildsystem=R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R packages needed for DEP8:
I: R Package: ape Version: 5.1
I: Building using R version 3.5.1-1
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Sun, 16 Sep 2018 10:23:44 +0200
mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-ape/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-ape/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 16 Sep 2018 10:23:44 +0200'"
* installing *source* package 'ape' ...
** package 'ape' successfully unpacked and MD5 sums checked
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c BIONJ.c -o BIONJ.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c NNI.c -o NNI.o
g++ -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SPR.c -o SPR.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TBR.c -o TBR.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c additive.c -o additive.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ape.c -o ape.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bNNI.c -o bNNI.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bionjs.c -o bionjs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bipartition.c -o bipartition.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bitsplits.c -o bitsplits.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c delta_plot.c -o delta_plot.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dist_dna.c -o dist_dna.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dist_nodes.c -o dist_nodes.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ewLasso.c -o ewLasso.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c heap.c -o heap.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mat_expo.c -o mat_expo.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c me.c -o me.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c me_balanced.c -o me_balanced.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c me_ols.c -o me_ols.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mvr.c -o mvr.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mvrs.c -o mvrs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nj.c -o nj.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c njs.c -o njs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pic.c -o pic.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot_phylo.c -o plot_phylo.o
g++ -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prop_part.cpp -o prop_part.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rTrait.c -o rTrait.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_dna.c -o read_dna.o
g++ -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reorder_Rcpp.cpp -o reorder_Rcpp.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c reorder_phylo.c -o reorder_phylo.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c treePop.c -o treePop.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tree_build.c -o tree_build.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tree_phylo.c -o tree_phylo.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c triangMtd.c -o triangMtd.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c triangMtds.c -o triangMtds.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ultrametric.c -o ultrametric.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o ape.so BIONJ.o NNI.o RcppExports.o SPR.o TBR.o additive.o ape.o bNNI.o bionjs.o bipartition.o bitsplits.o delta_plot.o dist_dna.o dist_nodes.o ewLasso.o heap.o mat_expo.o me.o me_balanced.o me_ols.o mvr.o mvrs.o nj.o njs.o pic.o plot_phylo.o prop_part.o rTrait.o read_dna.o reorder_Rcpp.o reorder_phylo.o treePop.o tree_build.o tree_phylo.o triangMtd.o triangMtds.o ultrametric.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-cran-ape/usr/lib/R/site-library/ape/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ape)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 290.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 291.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 294.
W: Ignoring specified R dependency: R (>= 3.2.0)
I: Using r-cran-gee for Suggests:gee
I: Using r-cran-expm for Suggests:expm
I: Using r-cran-igraph for Suggests:igraph
I: Using r-cran-nlme for Imports:nlme
I: Using r-cran-lattice for Imports:lattice
I: Using r-cran-rcpp for Imports:Rcpp (>= 0.12.0)
dh_install -a -O--buildsystem=R
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installman -a -O--buildsystem=R
dh_installcatalogs -a -O--buildsystem=R
dh_installcron -a -O--buildsystem=R
dh_installdebconf -a -O--buildsystem=R
dh_installemacsen -a -O--buildsystem=R
dh_installifupdown -a -O--buildsystem=R
dh_installinfo -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
dh_installsystemd -a -O--buildsystem=R
dh_installmenu -a -O--buildsystem=R
dh_installmime -a -O--buildsystem=R
dh_installmodules -a -O--buildsystem=R
dh_installlogcheck -a -O--buildsystem=R
dh_installlogrotate -a -O--buildsystem=R
dh_installpam -a -O--buildsystem=R
dh_installppp -a -O--buildsystem=R
dh_installudev -a -O--buildsystem=R
dh_installgsettings -a -O--buildsystem=R
dh_bugfiles -a -O--buildsystem=R
dh_ucf -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_gconf -a -O--buildsystem=R
dh_icons -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_usrlocal -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_installwm -a -O--buildsystem=R
dh_installxfonts -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-ape/usr/lib/R/site-library/ape/libs/ape.so was not linked against libgfortran.so.5 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-cran-ape/usr/lib/R/site-library/ape/libs/ape.so was not linked against libblas.so.3 (it uses none of the library's symbols)
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-ape' in '../r-cran-ape_5.1-2_armhf.deb'.
dpkg-deb: building package 'r-cran-ape-dbgsym' in '../r-cran-ape-dbgsym_5.1-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-cran-ape_5.1-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build r-cran-ape-5.1
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-09-18T05:19:14Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-ape_5.1-2_armhf.changes:
-------------------------------
Format: 1.8
Date: Sun, 16 Sep 2018 10:23:44 +0200
Source: r-cran-ape
Binary: r-cran-ape
Architecture: armhf
Version: 5.1-2
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Dylan Aïssi <bob.dybian@gmail.com>
Description:
r-cran-ape - GNU R package for Analyses of Phylogenetics and Evolution
Changes:
r-cran-ape (5.1-2) unstable; urgency=medium
.
* Update Maintainer to Debian R team
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Files:
2e89761a15ad236feeba814a30b508bf 634932 debug optional r-cran-ape-dbgsym_5.1-2_armhf.deb
8de2bfc4390a5ddab97c9b48cf39d764 8430 gnu-r optional r-cran-ape_5.1-2_armhf.buildinfo
991d6ff6b12f13843778f368ee20d1a9 2123432 gnu-r optional r-cran-ape_5.1-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-ape-dbgsym_5.1-2_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 634932 bytes: control archive=528 bytes.
372 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-ape-dbgsym
Source: r-cran-ape
Version: 5.1-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 660
Depends: r-cran-ape (= 5.1-2)
Section: debug
Priority: optional
Description: debug symbols for r-cran-ape
Build-Ids: 494cf4152d57e4a8335e69a6e947e4013b1a5689
drwxr-xr-x root/root 0 2018-09-16 08:23 ./
drwxr-xr-x root/root 0 2018-09-16 08:23 ./usr/
drwxr-xr-x root/root 0 2018-09-16 08:23 ./usr/lib/
drwxr-xr-x root/root 0 2018-09-16 08:23 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-09-16 08:23 ./usr/lib/debug/.build-id/
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r-cran-ape_5.1-2_armhf.deb
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new Debian package, version 2.0.
size 2123432 bytes: control archive=2616 bytes.
1684 bytes, 27 lines control
3845 bytes, 50 lines md5sums
Package: r-cran-ape
Version: 5.1-2
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 2364
Depends: r-base-core (>= 3.5.1-1), r-api-3.5, r-cran-nlme, r-cran-lattice, r-cran-rcpp (>= 0.12.0), libblas3 | libblas.so.3, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgfortran5 (>= 8), liblapack3 | liblapack.so.3, libstdc++6 (>= 5.2)
Suggests: r-cran-gee, r-cran-expm, r-cran-igraph, clustalw, muscle, phyml, t-coffee
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=ape
Description: GNU R package for Analyses of Phylogenetics and Evolution
This package provides functions for reading, writing, plotting, and
manipulating phylogenetic trees, analyses of comparative data in a
phylogenetic framework, ancestral character analyses, analyses of
diversification and macroevolution, computing distances from DNA
sequences, reading and writing nucleotide sequences as well as
importing from BioConductor, and several tools such as Mantel's test,
generalized skyline plots, graphical exploration of phylogenetic data
(alex, trex, kronoviz), estimation of absolute evolutionary rates and
clock-like trees using mean path lengths and penalized likelihood,
dating trees with non-contemporaneous sequences, translating DNA into
AA sequences, and assessing sequence alignments. Phylogeny estimation
can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods,
and several methods handling incomplete distance matrices (NJ*,
BIONJ*, MVR*, and the corresponding triangle method). Some functions
call external applications (PhyML, Clustal, T-Coffee, Muscle) whose
results are returned into R.
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Build Architecture: armhf
Build-Space: 8600
Build-Time: 446
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 1208
Job: r-cran-ape_5.1-2
Machine Architecture: armhf
Package: r-cran-ape
Package-Time: 1717
Source-Version: 5.1-2
Space: 8600
Status: successful
Version: 5.1-2
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Finished at 2018-09-18T05:19:14Z
Build needed 00:28:37, 8600k disc space