r-cran-alakazam →
1.2.0-1 →
armhf → 2021-11-07 07:37:53
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| r-cran-alakazam 1.2.0-1 (armhf) Sun, 07 Nov 2021 06:57:58 +0000 |
+==============================================================================+
Package: r-cran-alakazam
Version: 1.2.0-1
Source Version: 1.2.0-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-e0aad697-316d-4026-b801-3ea03d23a585' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.5 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-alakazam' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-alakazam.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-alakazam.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2056 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main r-cran-alakazam 1.2.0-1 (dsc) [2419 B]
Get:2 http://172.17.0.1/private bookworm-staging/main r-cran-alakazam 1.2.0-1 (tar) [2039 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main r-cran-alakazam 1.2.0-1 (diff) [14.0 kB]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-alakazam-70gsBA/r-cran-alakazam-1.2.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-alakazam-70gsBA' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-j94iE2/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-j94iE2/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-j94iE2/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-j94iE2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-j94iE2/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-j94iE2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-j94iE2/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-j94iE2/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2874 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 4 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-j94iE2/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12500 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-ggplot2 (>= 3.3.4), r-cran-airr, r-cran-ape, r-cran-dplyr (>= 1.0), r-cran-igraph, r-cran-matrix, r-cran-progress, r-cran-rcpp, r-cran-readr, r-cran-rlang, r-cran-scales, r-cran-seqinr, r-cran-stringi, r-cran-tibble, r-cran-tidyr (>= 1.0), r-bioc-biostrings (>= 2.56.0), r-bioc-genomicalignments (>= 1.24.0), r-bioc-iranges (>= 2.22.2)
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-ggplot2 (>= 3.3.4), r-cran-airr, r-cran-ape, r-cran-dplyr (>= 1.0), r-cran-igraph, r-cran-matrix, r-cran-progress, r-cran-rcpp, r-cran-readr, r-cran-rlang, r-cran-scales, r-cran-seqinr, r-cran-stringi, r-cran-tibble, r-cran-tidyr (>= 1.0), r-bioc-biostrings (>= 2.56.0), r-bioc-genomicalignments (>= 1.24.0), r-bioc-iranges (>= 2.22.2)
dpkg-deb: building package 'sbuild-build-depends-r-cran-alakazam-dummy' in '/<<BUILDDIR>>/resolver-j94iE2/apt_archive/sbuild-build-depends-r-cran-alakazam-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-cran-alakazam-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-j94iE2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-j94iE2/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-j94iE2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-j94iE2/apt_archive ./ Sources [651 B]
Get:5 copy:/<<BUILDDIR>>/resolver-j94iE2/apt_archive ./ Packages [729 B]
Fetched 2713 B in 1s (3421 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-cran-alakazam build dependencies (apt-based resolver)
---------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-10 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libscalar-list-utils-perl libsigsegv2 libsm6
libssh2-1 libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5
libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl
libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4
man-db openssl pkg-config po-debconf r-base-core r-base-dev r-bioc-biobase
r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings
r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges
r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-ade4
r-cran-airr r-cran-ape r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops
r-cran-cli r-cran-clipr r-cran-colorspace r-cran-cpp11 r-cran-crayon
r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-fansi r-cran-farver
r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics
r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hms r-cran-igraph
r-cran-isoband r-cran-labeling r-cran-lambda.r r-cran-lattice
r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix
r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar
r-cran-pixmap r-cran-pkgconfig r-cran-pkgkitten r-cran-prettyunits
r-cran-progress r-cran-purrr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp
r-cran-rcurl r-cran-readr r-cran-rlang r-cran-scales r-cran-segmented
r-cran-seqinr r-cran-snow r-cran-sp r-cran-stringi r-cran-tibble
r-cran-tidyr r-cran-tidyselect r-cran-tzdb r-cran-utf8 r-cran-vctrs
r-cran-viridislite r-cran-vroom r-cran-withr r-cran-yaml sensible-utils ucf
unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-10-doc libcoarrays-dev groff liblapack-doc
libboost-doc libboost1.74-doc libboost-atomic1.74-dev
libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev
libboost-contract1.74-dev libboost-coroutine1.74-dev
libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-program-options1.74-dev libboost-python1.74-dev
libboost-random1.74-dev libboost-regex1.74-dev
libboost-serialization1.74-dev libboost-stacktrace1.74-dev
libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6
tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libwww-perl
libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl
elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base
texlive-latex-base texlive-plain-generic texlive-fonts-recommended
texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
texlive-latex-extra texinfo r-bioc-all r-bioc-annotationdbi r-bioc-affy
r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc
r-bioc-variantannotation r-bioc-shortread r-cran-codetools r-bioc-biocstyle
r-cran-knitr r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures
r-cran-runit r-bioc-hdf5array r-bioc-genefilter r-bioc-delayedmatrixstats
r-cran-rmarkdown r-bioc-rtracklayer r-bioc-edger r-bioc-gviz
r-bioc-annotationhub r-bioc-dexseq r-bioc-keggrest r-bioc-sparsematrixstats
r-cran-testthat r-bioc-graph r-cran-jsonlite r-bioc-rhdf5 r-cran-adegraphics
r-cran-adephylo r-cran-deldir r-cran-spdep r-cran-waveslim r-cran-doparallel
r-cran-iterators r-cran-gee r-cran-expm clustalw muscle phyml t-coffee
r-cran-roxygen2 r-cran-callr r-cran-covr r-cran-htmltools r-cran-htmlwidgets
r-cran-processx r-cran-ps r-cran-rstudioapi r-cran-shiny r-cran-whoami
r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs
r-cran-png r-cran-jpeg r-cran-viridis r-cran-bench r-cran-desc r-cran-broom
r-cran-dbi r-cran-rmysql r-cran-rpostgresql r-cran-unitizer r-cran-rsqlite
r-cran-r.utils r-cran-forcats r-cran-stringr r-cran-lubridate r-cran-rgl
r-cran-magick r-cran-sf r-cran-tidyverse r-cran-getopt r-cran-base64enc
r-cran-markdown r-cran-formattable r-cran-survival r-cran-units
r-cran-inline r-cran-xml r-cran-dichromat r-cran-rmpi r-cran-rsprng
r-cran-rlecuyer r-cran-rgdal r-cran-maptools r-cran-blob r-cran-brio
r-cran-evaluate r-cran-pkgbuild r-cran-pkgload r-cran-zeallot
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs
r-cran-doparallel r-cran-batchtools r-cran-rmpi r-cran-testthat
r-cran-phangorn r-cran-mockery r-cran-decor r-cran-knitr r-cran-brio
r-cran-data.table r-cran-rsqlite r-cran-dbplyr r-cran-testit
r-cran-codetools r-cran-survival r-cran-pkgload r-cran-covr r-cran-ragg
r-cran-hexbin r-cran-hmisc r-cran-interp r-cran-mapproj r-cran-maps
r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-rmarkdown
r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2
r-cran-lubridate r-cran-mockr r-cran-waldo r-cran-dbi libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-10 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libscalar-list-utils-perl libsigsegv2 libsm6
libssh2-1 libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5
libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl
libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4
man-db openssl pkg-config po-debconf r-base-core r-base-dev r-bioc-biobase
r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings
r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges
r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-ade4
r-cran-airr r-cran-ape r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops
r-cran-cli r-cran-clipr r-cran-colorspace r-cran-cpp11 r-cran-crayon
r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-fansi r-cran-farver
r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics
r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hms r-cran-igraph
r-cran-isoband r-cran-labeling r-cran-lambda.r r-cran-lattice
r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix
r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar
r-cran-pixmap r-cran-pkgconfig r-cran-pkgkitten r-cran-prettyunits
r-cran-progress r-cran-purrr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp
r-cran-rcurl r-cran-readr r-cran-rlang r-cran-scales r-cran-segmented
r-cran-seqinr r-cran-snow r-cran-sp r-cran-stringi r-cran-tibble
r-cran-tidyr r-cran-tidyselect r-cran-tzdb r-cran-utf8 r-cran-vctrs
r-cran-viridislite r-cran-vroom r-cran-withr r-cran-yaml
sbuild-build-depends-r-cran-alakazam-dummy sensible-utils ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
0 upgraded, 257 newly installed, 0 to remove and 4 not upgraded.
Need to get 202 MB of archives.
After this operation, 557 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-j94iE2/apt_archive ./ sbuild-build-depends-r-cran-alakazam-dummy 0.invalid.0 [1008 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-4 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.5-1 [823 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf openssl armhf 1.1.1l-1 [815 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-2 [26.3 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-2 [15.5 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf unzip armhf 6.0-26 [151 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-1 [108 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-3 [80.1 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf libfreetype6 armhf 2.11.0+dfsg-1 [386 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libcurl4 armhf 7.74.0-1.3 [305 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.0-3 [1209 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-10+rpi1 [234 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-1 [1594 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf libthai-data all 0.1.28-4.1 [171 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2 [39.7 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf libthai0 armhf 0.1.28-4.1 [51.4 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.48.10+ds1-1 [184 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.48.10+ds1-1 [66.6 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.48.10+ds1-1 [56.8 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.11+dfsg-1 [894 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.8-1 [44.1 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-2 [272 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.11.1-1 [681 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf r-base-core armhf 4.1.2-1 [25.4 MB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf libgfortran-10-dev armhf 10.3.0-11+rpi1 [277 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf gfortran-10 armhf 10.3.0-11+rpi1 [7201 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf gfortran armhf 4:10.2.1-1+rpi1 [1428 B]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.0-1 [113 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.0-1 [2872 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.2+20201114-4 [79.7 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf libncurses-dev armhf 6.2+20201114-4 [288 kB]
Get:102 http://172.17.0.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.2+20201114-4 [940 B]
Get:103 http://172.17.0.1/private bookworm-staging/main armhf libreadline-dev armhf 8.1-2 [121 kB]
Get:104 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.6-4 [240 kB]
Get:105 http://172.17.0.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.0.6-4 [67.8 kB]
Get:106 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.36-2 [197 kB]
Get:107 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.36-2 [187 kB]
Get:108 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-posix2 armhf 10.36-2 [48.7 kB]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.36-2 [626 kB]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:111 http://172.17.0.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:112 http://172.17.0.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:113 http://172.17.0.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:114 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:115 http://172.17.0.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:116 http://172.17.0.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:117 http://172.17.0.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2 [219 kB]
Get:118 http://172.17.0.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:119 http://172.17.0.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:120 http://172.17.0.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:121 http://172.17.0.1/private bookworm-staging/main armhf xauth armhf 1:1.1-1 [36.6 kB]
Get:122 http://172.17.0.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:123 http://172.17.0.1/private bookworm-staging/main armhf r-base-dev all 4.1.2-1 [4484 B]
Get:124 http://172.17.0.1/private bookworm-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:125 http://172.17.0.1/private bookworm-staging/main armhf libswitch-perl all 2.17-2.1 [20.0 kB]
Get:126 http://172.17.0.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:127 http://172.17.0.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:128 http://172.17.0.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:129 http://172.17.0.1/private bookworm-staging/main armhf libio-html-perl all 1.004-2 [16.1 kB]
Get:130 http://172.17.0.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:131 http://172.17.0.1/private bookworm-staging/main armhf liburi-perl all 5.10-1 [91.0 kB]
Get:132 http://172.17.0.1/private bookworm-staging/main armhf libhttp-message-perl all 6.33-1 [80.1 kB]
Get:133 http://172.17.0.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB]
Get:134 http://172.17.0.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:135 http://172.17.0.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:136 http://172.17.0.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:137 http://172.17.0.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:138 http://172.17.0.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:139 http://172.17.0.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:140 http://172.17.0.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:141 http://172.17.0.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:142 http://172.17.0.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get:143 http://172.17.0.1/private bookworm-staging/main armhf libscalar-list-utils-perl armhf 1:1.59-1 [60.8 kB]
Get:144 http://172.17.0.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.39-1 [21.9 kB]
Get:145 http://172.17.0.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:146 http://172.17.0.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b4 [14.3 kB]
Get:147 http://172.17.0.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:148 http://172.17.0.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get:149 http://172.17.0.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:150 http://172.17.0.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:151 http://172.17.0.1/private bookworm-staging/main armhf libmro-compat-perl all 0.13-1 [12.2 kB]
Get:152 http://172.17.0.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:153 http://172.17.0.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:154 http://172.17.0.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:155 http://172.17.0.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:156 http://172.17.0.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get:157 http://172.17.0.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get:158 http://172.17.0.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB]
Get:159 http://172.17.0.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get:160 http://172.17.0.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.5 kB]
Get:161 http://172.17.0.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2015-1 [803 kB]
Get:162 http://172.17.0.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB]
Get:163 http://172.17.0.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.25-1 [19.5 kB]
Get:164 http://172.17.0.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB]
Get:165 http://172.17.0.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:166 http://172.17.0.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.74.0-1.3 [301 kB]
Get:167 http://172.17.0.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-7+b1 [58.9 kB]
Get:168 http://172.17.0.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:169 http://172.17.0.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:170 http://172.17.0.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-9 [9534 kB]
Get:171 http://172.17.0.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b1 [4820 B]
Get:172 http://172.17.0.1/private bookworm-staging/main armhf r-cran-littler armhf 0.3.14-1 [95.1 kB]
Get:173 http://172.17.0.1/private bookworm-staging/main armhf littler all 0.3.14-1 [16.6 kB]
Get:174 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.38.0-1 [648 kB]
Get:175 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biobase armhf 2.52.0-1 [2214 kB]
Get:176 http://172.17.0.1/private bookworm-staging/main armhf r-cran-formatr all 1.11-1 [147 kB]
Get:177 http://172.17.0.1/private bookworm-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:178 http://172.17.0.1/private bookworm-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:179 http://172.17.0.1/private bookworm-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:180 http://172.17.0.1/private bookworm-staging/main armhf r-cran-snow all 1:0.4.4-1 [99.0 kB]
Get:181 http://172.17.0.1/private bookworm-staging/main armhf r-cran-bh all 1.74.0-2 [5524 B]
Get:182 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biocparallel armhf 1.26.2-1 [1187 kB]
Get:183 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-s4vectors armhf 0.30.2-1 [2064 kB]
Get:184 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-iranges armhf 2.26.0-1 [2205 kB]
Get:185 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-zlibbioc all 1.38.0+dfsg-1 [9008 B]
Get:186 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-xvector armhf 0.32.0-1 [609 kB]
Get:187 http://172.17.0.1/private bookworm-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:188 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rcurl armhf 1.98-1.5-1 [800 kB]
Get:189 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-genomeinfodbdata all 1.2.6-1 [11.0 MB]
Get:190 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-genomeinfodb all 1.28.4-1 [3921 kB]
Get:191 http://172.17.0.1/private bookworm-staging/main armhf r-cran-crayon all 1.4.2-1 [158 kB]
Get:192 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biostrings armhf 2.60.2-1 [14.2 MB]
Get:193 http://172.17.0.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-45-1 [1176 kB]
Get:194 http://172.17.0.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.3-4-2 [3573 kB]
Get:195 http://172.17.0.1/private bookworm-staging/main armhf r-cran-matrixstats armhf 0.61.0-1 [451 kB]
Get:196 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-matrixgenerics all 1.4.3-1 [301 kB]
Get:197 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-delayedarray armhf 0.18.0+dfsg-2 [1987 kB]
Get:198 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-genomicranges armhf 1.44.0+dfsg-1 [1861 kB]
Get:199 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-summarizedexperiment all 1.22.0+dfsg-1 [1982 kB]
Get:200 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-rhtslib armhf 1.24.0+dfsg-1 [946 kB]
Get:201 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-rsamtools armhf 2.8.0-1 [3538 kB]
Get:202 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-genomicalignments armhf 1.28.0-1 [2198 kB]
Get:203 http://172.17.0.1/private bookworm-staging/main armhf r-cran-mass armhf 7.3-54-2 [1117 kB]
Get:204 http://172.17.0.1/private bookworm-staging/main armhf r-cran-pixmap all 0.4-12-1 [201 kB]
Get:205 http://172.17.0.1/private bookworm-staging/main armhf r-cran-sp armhf 1:1.4-5-1 [1794 kB]
Get:206 http://172.17.0.1/private bookworm-staging/main armhf r-cran-ade4 armhf 1.7-18-1 [5117 kB]
Get:207 http://172.17.0.1/private bookworm-staging/main armhf r-cran-glue armhf 1.4.2-1 [139 kB]
Get:208 http://172.17.0.1/private bookworm-staging/main armhf r-cran-cli armhf 3.1.0-1 [1093 kB]
Get:209 http://172.17.0.1/private bookworm-staging/main armhf r-cran-clipr all 0.7.1-1 [50.7 kB]
Get:210 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rlang armhf 0.4.12-2 [1185 kB]
Get:211 http://172.17.0.1/private bookworm-staging/main armhf r-cran-ellipsis armhf 0.3.2-2 [35.1 kB]
Get:212 http://172.17.0.1/private bookworm-staging/main armhf r-cran-lifecycle all 1.0.1-1 [103 kB]
Get:213 http://172.17.0.1/private bookworm-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:214 http://172.17.0.1/private bookworm-staging/main armhf r-cran-vctrs armhf 0.3.8-1 [1099 kB]
Get:215 http://172.17.0.1/private bookworm-staging/main armhf r-cran-hms all 1.1.1-1 [103 kB]
Get:216 http://172.17.0.1/private bookworm-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:217 http://172.17.0.1/private bookworm-staging/main armhf r-cran-fansi armhf 0.5.0-1 [379 kB]
Get:218 http://172.17.0.1/private bookworm-staging/main armhf r-cran-magrittr armhf 2.0.1-1 [197 kB]
Get:219 http://172.17.0.1/private bookworm-staging/main armhf r-cran-utf8 armhf 1.2.2-1 [129 kB]
Get:220 http://172.17.0.1/private bookworm-staging/main armhf r-cran-pillar all 1.6.4+dfsg-1 [404 kB]
Get:221 http://172.17.0.1/private bookworm-staging/main armhf r-cran-tibble armhf 3.1.5+dfsg-1 [458 kB]
Get:222 http://172.17.0.1/private bookworm-staging/main armhf r-cran-bit armhf 4.0.4+dfsg-1 [418 kB]
Get:223 http://172.17.0.1/private bookworm-staging/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB]
Get:224 http://172.17.0.1/private bookworm-staging/main armhf r-cran-cpp11 all 0.4.0-1 [223 kB]
Get:225 http://172.17.0.1/private bookworm-staging/main armhf r-cran-tzdb armhf 0.2.0-1 [472 kB]
Get:226 http://172.17.0.1/private bookworm-staging/main armhf r-cran-purrr armhf 0.3.4-1+b1 [402 kB]
Get:227 http://172.17.0.1/private bookworm-staging/main armhf r-cran-tidyselect armhf 1.1.1+dfsg-1 [194 kB]
Get:228 http://172.17.0.1/private bookworm-staging/main armhf r-cran-withr all 2.4.2-1 [213 kB]
Get:229 http://172.17.0.1/private bookworm-staging/main armhf r-cran-prettyunits all 1.1.1-2 [39.1 kB]
Get:230 http://172.17.0.1/private bookworm-staging/main armhf r-cran-progress all 1.2.2-2 [88.9 kB]
Get:231 http://172.17.0.1/private bookworm-staging/main armhf r-cran-vroom armhf 1.5.5-1 [776 kB]
Get:232 http://172.17.0.1/private bookworm-staging/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get:233 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rcpp armhf 1.0.7-2 [1997 kB]
Get:234 http://172.17.0.1/private bookworm-staging/main armhf r-cran-readr armhf 2.0.2-1 [746 kB]
Get:235 http://172.17.0.1/private bookworm-staging/main armhf r-cran-stringi armhf 1.7.5-1 [775 kB]
Get:236 http://172.17.0.1/private bookworm-staging/main armhf r-cran-yaml armhf 2.2.1-1+b1 [92.2 kB]
Get:237 http://172.17.0.1/private bookworm-staging/main armhf r-cran-airr all 1.3.0-2 [366 kB]
Get:238 http://172.17.0.1/private bookworm-staging/main armhf r-cran-nlme armhf 3.1.153-1 [2266 kB]
Get:239 http://172.17.0.1/private bookworm-staging/main armhf r-cran-ape armhf 5.5-1 [3113 kB]
Get:240 http://172.17.0.1/private bookworm-staging/main armhf r-cran-colorspace armhf 2.0-2+dfsg-1 [1690 kB]
Get:241 http://172.17.0.1/private bookworm-staging/main armhf r-cran-digest armhf 0.6.28-1 [187 kB]
Get:242 http://172.17.0.1/private bookworm-staging/main armhf r-cran-generics all 0.1.1-1 [77.0 kB]
Get:243 http://172.17.0.1/private bookworm-staging/main armhf r-cran-dplyr armhf 1.0.7-2 [1166 kB]
Get:244 http://172.17.0.1/private bookworm-staging/main armhf r-cran-farver armhf 2.1.0-1 [1394 kB]
Get:245 http://172.17.0.1/private bookworm-staging/main armhf r-cran-gtable all 0.3.0+dfsg-2 [163 kB]
Get:246 http://172.17.0.1/private bookworm-staging/main armhf r-cran-isoband armhf 0.2.5-1 [1756 kB]
Get:247 http://172.17.0.1/private bookworm-staging/main armhf r-cran-mgcv armhf 1.8-38-1 [2982 kB]
Get:248 http://172.17.0.1/private bookworm-staging/main armhf r-cran-labeling all 0.4.2-1 [62.7 kB]
Get:249 http://172.17.0.1/private bookworm-staging/main armhf r-cran-munsell all 0.5.0-2 [236 kB]
Get:250 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rcolorbrewer all 1.1-2-3 [54.4 kB]
Get:251 http://172.17.0.1/private bookworm-staging/main armhf r-cran-viridislite all 0.4.0-2 [1298 kB]
Get:252 http://172.17.0.1/private bookworm-staging/main armhf r-cran-scales all 1.1.1-1 [557 kB]
Get:253 http://172.17.0.1/private bookworm-staging/main armhf r-cran-ggplot2 all 3.3.5+dfsg-2 [3215 kB]
Get:254 http://172.17.0.1/private bookworm-staging/main armhf r-cran-igraph armhf 1.2.6-1 [3338 kB]
Get:255 http://172.17.0.1/private bookworm-staging/main armhf r-cran-segmented all 1.3-1-1 [521 kB]
Get:256 http://172.17.0.1/private bookworm-staging/main armhf r-cran-seqinr armhf 4.2-8-1 [3980 kB]
Get:257 http://172.17.0.1/private bookworm-staging/main armhf r-cran-tidyr armhf 1.1.4-1 [791 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2+b3) ...
Setting up libsub-exporter-perl (0.988-1) ...
Setting up libhttp-message-perl (6.33-1) ...
Setting up libeval-closure-perl (0.14-1) ...
Setting up automake (1:1.16.5-1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl (4.17-7+b1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:10.2.1-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up dh-autoreconf (20) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up libdist-checkconflicts-perl (0.11-1.1) ...
Setting up libxt6:armhf (1:1.2.0-1) ...
Setting up xauth (1:1.1-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up libmodule-implementation-perl (0.09-1.1) ...
Setting up libpackage-stash-perl (0.39-1) ...
Setting up libtk8.6:armhf (8.6.11.1-1) ...
Setting up libpango-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up debhelper (13.5.2) ...
Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ...
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up libpackage-deprecationmanager-perl (0.17-1.1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-1+b4) ...
Setting up libpangoft2-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libb-hooks-endofscope-perl (0.25-1) ...
Setting up libpangocairo-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libmoose-perl:armhf (2.2015-1) ...
Setting up r-base-core (4.1.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.4.2-1) ...
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up r-cran-gtable (0.3.0+dfsg-2) ...
Setting up r-cran-labeling (0.4.2-1) ...
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.20-45-1) ...
Setting up r-cran-nlme (3.1.153-1) ...
Setting up r-cran-farver (2.1.0-1) ...
Setting up r-cran-formatr (1.11-1) ...
Setting up r-cran-viridislite (0.4.0-2) ...
Setting up r-cran-pixmap (0.4-12-1) ...
Setting up r-cran-clipr (0.7.1-1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.2-2) ...
Setting up r-cran-magrittr (2.0.1-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.6-1) ...
Setting up r-cran-littler (0.3.14-1) ...
Setting up r-cran-rcpp (1.0.7-2) ...
Setting up r-bioc-biocgenerics (0.38.0-1) ...
Setting up r-cran-rlang (0.4.12-2) ...
Setting up r-cran-matrixstats (0.61.0-1) ...
Setting up r-base-dev (4.1.2-1) ...
Setting up littler (0.3.14-1) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up r-bioc-matrixgenerics (1.4.3-1) ...
Setting up r-cran-withr (2.4.2-1) ...
Setting up r-cran-generics (0.1.1-1) ...
Setting up r-cran-digest (0.6.28-1) ...
Setting up r-cran-ape (5.5-1) ...
Setting up r-cran-yaml (2.2.1-1+b1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-prettyunits (1.1.1-2) ...
Setting up r-cran-fansi (0.5.0-1) ...
Setting up r-cran-mass (7.3-54-2) ...
Setting up r-cran-snow (1:0.4.4-1) ...
Setting up r-cran-glue (1.4.2-1) ...
Setting up r-cran-bit (4.0.4+dfsg-1) ...
Setting up r-cran-cli (3.1.0-1) ...
Setting up r-cran-lifecycle (1.0.1-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-cran-bit64 (4.0.5-1) ...
Setting up r-bioc-zlibbioc (1.38.0+dfsg-1) ...
Setting up r-bioc-biobase (2.52.0-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-sp (1:1.4-5-1) ...
Setting up r-cran-utf8 (1.2.2-1) ...
Setting up r-cran-colorspace (2.0-2+dfsg-1) ...
Setting up r-cran-stringi (1.7.5-1) ...
Setting up r-cran-cpp11 (0.4.0-1) ...
Setting up r-cran-segmented (1.3-1-1) ...
Setting up r-cran-rcolorbrewer (1.1-2-3) ...
Setting up r-bioc-s4vectors (0.30.2-1) ...
Setting up r-cran-isoband (0.2.5-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up r-cran-purrr (0.3.4-1+b1) ...
Setting up r-cran-matrix (1.3-4-2) ...
Setting up r-cran-mgcv (1.8-38-1) ...
Setting up r-bioc-iranges (2.26.0-1) ...
Setting up dh-r (20210816) ...
Setting up r-cran-tzdb (0.2.0-1) ...
Setting up r-cran-rcurl (1.98-1.5-1) ...
Setting up r-bioc-delayedarray (0.18.0+dfsg-2) ...
Setting up r-cran-ellipsis (0.3.2-2) ...
Setting up r-bioc-biocparallel (1.26.2-1) ...
Setting up r-bioc-rhtslib (1.24.0+dfsg-1) ...
Setting up r-cran-munsell (0.5.0-2) ...
Setting up r-cran-igraph (1.2.6-1) ...
Setting up r-cran-ade4 (1.7-18-1) ...
Setting up r-bioc-genomeinfodb (1.28.4-1) ...
Setting up r-cran-scales (1.1.1-1) ...
Setting up r-bioc-xvector (0.32.0-1) ...
Setting up r-cran-vctrs (0.3.8-1) ...
Setting up r-cran-pillar (1.6.4+dfsg-1) ...
Setting up r-cran-seqinr (4.2-8-1) ...
Setting up r-bioc-genomicranges (1.44.0+dfsg-1) ...
Setting up r-bioc-biostrings (2.60.2-1) ...
Setting up r-cran-tibble (3.1.5+dfsg-1) ...
Setting up r-cran-tidyselect (1.1.1+dfsg-1) ...
Setting up r-cran-hms (1.1.1-1) ...
Setting up r-bioc-rsamtools (2.8.0-1) ...
Setting up r-cran-dplyr (1.0.7-2) ...
Setting up r-cran-progress (1.2.2-2) ...
Setting up r-bioc-summarizedexperiment (1.22.0+dfsg-1) ...
Setting up r-cran-vroom (1.5.5-1) ...
Setting up r-cran-ggplot2 (3.3.5+dfsg-2) ...
Setting up r-cran-readr (2.0.2-1) ...
Setting up r-cran-tidyr (1.1.4-1) ...
Setting up r-bioc-genomicalignments (1.28.0-1) ...
Setting up r-cran-airr (1.3.0-2) ...
Setting up sbuild-build-depends-r-cran-alakazam-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-11+rpi1 gcc-10_10.3.0-11+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-10+rpi1 linux-libc-dev_5.14.9-2+rpi1
Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-11+rpi1 dash_0.5.11+git20210903+057cd650a4ed-1 dctrl-tools_2.24-3 debconf_1.5.78 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-11+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-11+rpi1 gcc-10-base_10.3.0-11+rpi1 gcc-11-base_11.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 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logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-4 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 openssl_1.1.1l-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 r-base-core_4.1.2-1 r-base-dev_4.1.2-1 r-bioc-biobase_2.52.0-1 r-bioc-biocgenerics_0.38.0-1 r-bioc-biocparallel_1.26.2-1 r-bioc-biostrings_2.60.2-1 r-bioc-delayedarray_0.18.0+dfsg-2 r-bioc-genomeinfodb_1.28.4-1 r-bioc-genomeinfodbdata_1.2.6-1 r-bioc-genomicalignments_1.28.0-1 r-bioc-genomicranges_1.44.0+dfsg-1 r-bioc-iranges_2.26.0-1 r-bioc-matrixgenerics_1.4.3-1 r-bioc-rhtslib_1.24.0+dfsg-1 r-bioc-rsamtools_2.8.0-1 r-bioc-s4vectors_0.30.2-1 r-bioc-summarizedexperiment_1.22.0+dfsg-1 r-bioc-xvector_0.32.0-1 r-bioc-zlibbioc_1.38.0+dfsg-1 r-cran-ade4_1.7-18-1 r-cran-airr_1.3.0-2 r-cran-ape_5.5-1 r-cran-bh_1.74.0-2 r-cran-bit_4.0.4+dfsg-1 r-cran-bit64_4.0.5-1 r-cran-bitops_1.0-7-1 r-cran-cli_3.1.0-1 r-cran-clipr_0.7.1-1 r-cran-colorspace_2.0-2+dfsg-1 r-cran-cpp11_0.4.0-1 r-cran-crayon_1.4.2-1 r-cran-digest_0.6.28-1 r-cran-dplyr_1.0.7-2 r-cran-ellipsis_0.3.2-2 r-cran-fansi_0.5.0-1 r-cran-farver_2.1.0-1 r-cran-formatr_1.11-1 r-cran-futile.logger_1.4.3-4 r-cran-futile.options_1.0.1-3 r-cran-generics_0.1.1-1 r-cran-ggplot2_3.3.5+dfsg-2 r-cran-glue_1.4.2-1 r-cran-gtable_0.3.0+dfsg-2 r-cran-hms_1.1.1-1 r-cran-igraph_1.2.6-1 r-cran-isoband_0.2.5-1 r-cran-labeling_0.4.2-1 r-cran-lambda.r_1.2.4-2 r-cran-lattice_0.20-45-1 r-cran-lifecycle_1.0.1-1 r-cran-littler_0.3.14-1 r-cran-magrittr_2.0.1-1 r-cran-mass_7.3-54-2 r-cran-matrix_1.3-4-2 r-cran-matrixstats_0.61.0-1 r-cran-mgcv_1.8-38-1 r-cran-munsell_0.5.0-2 r-cran-nlme_3.1.153-1 r-cran-pillar_1.6.4+dfsg-1 r-cran-pixmap_0.4-12-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.2-2 r-cran-prettyunits_1.1.1-2 r-cran-progress_1.2.2-2 r-cran-purrr_0.3.4-1+b1 r-cran-r6_2.5.1-1 r-cran-rcolorbrewer_1.1-2-3 r-cran-rcpp_1.0.7-2 r-cran-rcurl_1.98-1.5-1 r-cran-readr_2.0.2-1 r-cran-rlang_0.4.12-2 r-cran-scales_1.1.1-1 r-cran-segmented_1.3-1-1 r-cran-seqinr_4.2-8-1 r-cran-snow_1:0.4.4-1 r-cran-sp_1:1.4-5-1 r-cran-stringi_1.7.5-1 r-cran-tibble_3.1.5+dfsg-1 r-cran-tidyr_1.1.4-1 r-cran-tidyselect_1.1.1+dfsg-1 r-cran-tzdb_0.2.0-1 r-cran-utf8_1.2.2-1 r-cran-vctrs_0.3.8-1 r-cran-viridislite_0.4.0-2 r-cran-vroom_1.5.5-1 r-cran-withr_2.4.2-1 r-cran-yaml_2.2.1-1+b1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-alakazam-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 unzip_6.0-26 util-linux_2.37.2-4 x11-common_1:7.7+23 xauth_1:1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2 zip_3.0-12 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.SFN8lZbr/trustedkeys.kbx': General error
gpgv: Signature made Thu Nov 4 21:54:06 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "nilesh@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-cran-alakazam_1.2.0-1.dsc
dpkg-source: info: extracting r-cran-alakazam in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-cran-alakazam_1.2.0.orig.tar.gz
dpkg-source: info: unpacking r-cran-alakazam_1.2.0-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-e0aad697-316d-4026-b801-3ea03d23a585
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-cran-alakazam
dpkg-buildpackage: info: source version 1.2.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
find . \( -name "*.o" -o -name "*.so" \) -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-cran-alakazam/ -a -O--buildsystem=R
I: R Package: alakazam Version: 1.2.0
I: Building using R version 4.1.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Fri, 05 Nov 2021 03:15:47 +0530
mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-alakazam/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-alakazam/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 05 Nov 2021 03:15:47 +0530'"
* installing *source* package 'alakazam' ...
** package 'alakazam' successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4lrxNK/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppDistance.cpp -o RcppDistance.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-4lrxNK/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o alakazam.so RcppDistance.o RcppExports.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-cran-alakazam/usr/lib/R/site-library/00LOCK-r-cran-alakazam-1.2.0/00new/alakazam/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (alakazam)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 303.
W: Ignoring specified R dependency: R (>= 4.0)
I: Using r-cran-ggplot2 for Depends:ggplot2 (>= 3.3.4)
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-testthat for Suggests:testthat
I: Using r-cran-airr for Imports:airr (>= 1.3)
I: Using r-cran-ape for Imports:ape
I: Using r-cran-dplyr for Imports:dplyr (>= 1.0)
I: Using r-cran-igraph for Imports:igraph (>= 1.0)
I: Using r-cran-matrix for Imports:Matrix
I: Using r-cran-progress for Imports:progress
I: Using r-cran-rcpp for Imports:Rcpp (>= 0.12.12)
I: Using r-cran-readr for Imports:readr
I: Using r-cran-rlang for Imports:rlang
I: Using r-cran-scales for Imports:scales
I: Using r-cran-seqinr for Imports:seqinr
I: Using r-cran-stringi for Imports:stringi
I: Using r-cran-tibble for Imports:tibble
I: Using r-cran-tidyr for Imports:tidyr (>= 1.0)
I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.56.0)
I: Using r-bioc-genomicalignments for Imports:GenomicAlignments (>= 1.24.0)
I: Using r-bioc-iranges for Imports:IRanges (>= 2.22.2)
I: Using r-cran-rcpp for LinkingTo:Rcpp
W: Impossible to determine BioConductor release from DESCRIPTION file! Is there a 'git_branch' field?
I: Use r-cran-alakazam as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-alakazam-dbgsym' in '../r-cran-alakazam-dbgsym_1.2.0-1_armhf.deb'.
dpkg-deb: building package 'r-cran-alakazam' in '../r-cran-alakazam_1.2.0-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-cran-alakazam_1.2.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-11-07T07:37:46Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-alakazam_1.2.0-1_armhf.changes:
--------------------------------------
Format: 1.8
Date: Fri, 05 Nov 2021 03:15:47 +0530
Source: r-cran-alakazam
Binary: r-cran-alakazam r-cran-alakazam-dbgsym
Architecture: armhf
Version: 1.2.0-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
r-cran-alakazam - Immunoglobulin Clonal Lineage and Diversity Analysis
Changes:
r-cran-alakazam (1.2.0-1) unstable; urgency=medium
.
* Team Upload.
* New upstream version 1.2.0
* d/control: Run cme
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18021a29e50acea0bc3ab0672c42bd2f 12246 gnu-r optional r-cran-alakazam_1.2.0-1_armhf.buildinfo
0f73fdd3ba207af5831a1f09594be5d0 2365540 gnu-r optional r-cran-alakazam_1.2.0-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-alakazam-dbgsym_1.2.0-1_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 538336 bytes: control archive=540 bytes.
396 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-alakazam-dbgsym
Source: r-cran-alakazam
Version: 1.2.0-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 559
Depends: r-cran-alakazam (= 1.2.0-1)
Section: debug
Priority: optional
Description: debug symbols for r-cran-alakazam
Build-Ids: a2992b62563f9dcfd4a5e2c926dd46e52c656226
drwxr-xr-x root/root 0 2021-11-04 21:45 ./
drwxr-xr-x root/root 0 2021-11-04 21:45 ./usr/
drwxr-xr-x root/root 0 2021-11-04 21:45 ./usr/lib/
drwxr-xr-x root/root 0 2021-11-04 21:45 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-11-04 21:45 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-11-04 21:45 ./usr/lib/debug/.build-id/a2/
-rw-r--r-- root/root 561424 2021-11-04 21:45 ./usr/lib/debug/.build-id/a2/992b62563f9dcfd4a5e2c926dd46e52c656226.debug
drwxr-xr-x root/root 0 2021-11-04 21:45 ./usr/share/
drwxr-xr-x root/root 0 2021-11-04 21:45 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-11-04 21:45 ./usr/share/doc/r-cran-alakazam-dbgsym -> r-cran-alakazam
r-cran-alakazam_1.2.0-1_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 2365540 bytes: control archive=2700 bytes.
1869 bytes, 30 lines control
4856 bytes, 57 lines md5sums
Package: r-cran-alakazam
Version: 1.2.0-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 2780
Depends: r-base-core (>= 4.1.2-1), r-api-4.0, r-cran-ggplot2 (>= 3.3.4), r-cran-airr (>= 1.3), r-cran-ape, r-cran-dplyr (>= 1.0), r-cran-igraph (>= 1.0), r-cran-matrix, r-cran-progress, r-cran-rcpp (>= 0.12.12), r-cran-readr, r-cran-rlang, r-cran-scales, r-cran-seqinr, r-cran-stringi, r-cran-tibble, r-cran-tidyr (>= 1.0), r-bioc-biostrings (>= 2.56.0), r-bioc-genomicalignments (>= 1.24.0), r-bioc-iranges (>= 2.22.2), libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2)
Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-testthat
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=alakazam
Description: Immunoglobulin Clonal Lineage and Diversity Analysis
Alakazam is part of the Immcantation analysis framework for Adaptive
Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of
tools to investigate lymphocyte receptor clonal lineages, diversity,
gene usage, and other repertoire level properties, with a focus on
high-throughput immunoglobulin (Ig) sequencing.
.
Alakazam serves five main purposes:
* Providing core functionality for other R packages in the Immcantation
framework. This includes common tasks such as file I/O, basic DNA
sequence manipulation, and interacting with V(D)J segment and gene
annotations.
* Providing an R interface for interacting with the output of the
pRESTO and Change-O tool suites.
* Performing lineage reconstruction on clonal populations of Ig
sequences and analyzing the topology of the resultant lineage trees.
* Performing clonal abundance and diversity analysis on lymphocyte
repertoires.
* Performing physicochemical property analyses of lymphocyte receptor
sequences.
drwxr-xr-x root/root 0 2021-11-04 21:45 ./
drwxr-xr-x root/root 0 2021-11-04 21:45 ./usr/
drwxr-xr-x root/root 0 2021-11-04 21:45 ./usr/lib/
drwxr-xr-x root/root 0 2021-11-04 21:45 ./usr/lib/R/
drwxr-xr-x root/root 0 2021-11-04 21:45 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2021-11-04 21:45 ./usr/lib/R/site-library/alakazam/
-rw-r--r-- root/root 2120 2021-11-04 21:45 ./usr/lib/R/site-library/alakazam/CITATION
-rw-r--r-- root/root 3131 2021-11-04 21:45 ./usr/lib/R/site-library/alakazam/DESCRIPTION
-rw-r--r-- root/root 6077 2021-11-04 21:45 ./usr/lib/R/site-library/alakazam/INDEX
drwxr-xr-x root/root 0 2021-11-04 21:45 ./usr/lib/R/site-library/alakazam/Meta/
-rw-r--r-- root/root 3354 2021-11-04 21:45 ./usr/lib/R/site-library/alakazam/Meta/Rd.rds
-rw-r--r-- root/root 355 2021-11-04 21:45 ./usr/lib/R/site-library/alakazam/Meta/data.rds
-rw-r--r-- root/root 132 2021-11-04 21:45 ./usr/lib/R/site-library/alakazam/Meta/features.rds
-rw-r--r-- root/root 2953 2021-11-04 21:45 ./usr/lib/R/site-library/alakazam/Meta/hsearch.rds
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| Post Build |
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 9256
Build-Time: 490
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1846
Job: r-cran-alakazam_1.2.0-1
Machine Architecture: armhf
Package: r-cran-alakazam
Package-Time: 2388
Source-Version: 1.2.0-1
Space: 9256
Status: successful
Version: 1.2.0-1
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Finished at 2021-11-07T07:37:46Z
Build needed 00:39:48, 9256k disc space