Build log for r-bioc-titancna (1.36.0-1) on armhf

r-bioc-titancna → 1.36.0-1 → armhf → 2022-12-07 12:27:18

sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019

+==============================================================================+
| r-bioc-titancna 1.36.0-1 (armhf)             Wed, 07 Dec 2022 11:48:42 +0000 |
+==============================================================================+

Package: r-bioc-titancna
Version: 1.36.0-1
Source Version: 1.36.0-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-4413df59-42ec-47d4-a75b-4bb28b763311' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-titancna-PKwL05/resolver-Ups8BN' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.5 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.3 MB]
Fetched 27.8 MB in 15s (1898 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-bioc-titancna' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-titancna.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-titancna.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3865 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-bioc-titancna 1.36.0-1 (dsc) [2242 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-bioc-titancna 1.36.0-1 (tar) [3860 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-bioc-titancna 1.36.0-1 (diff) [2576 B]
Fetched 3865 kB in 1s (7034 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-titancna-PKwL05/r-bioc-titancna-1.36.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-titancna-PKwL05' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.31.6), r-bioc-iranges, r-bioc-genomicranges, r-bioc-variantannotation, r-cran-foreach, r-bioc-genomeinfodb, r-cran-data.table, r-cran-dplyr, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.31.6), r-bioc-iranges, r-bioc-genomicranges, r-bioc-variantannotation, r-cran-foreach, r-bioc-genomeinfodb, r-cran-data.table, r-cran-dplyr, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [452 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [541 B]
Fetched 1950 B in 0s (37.0 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libpam-cap libperl5.34 perl-modules-5.34
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils bsdutils
  ca-certificates cpp-12 dctrl-tools debhelper dh-autoreconf dh-r
  dh-strip-nondeterminism dwz file fontconfig fontconfig-config
  fonts-dejavu-core g++-12 gcc-12 gcc-12-base gettext gettext-base gfortran
  gfortran-12 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
  libarchive-zip-perl libasan8 libatomic1 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libblas-dev libblas3 libblkid1 libboost-dev
  libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libcc1-0
  libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl
  libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl
  libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
  libdevel-overloadinfo-perl libdevel-stacktrace-perl
  libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
  libencode-locale-perl libeval-closure-perl libexpat1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgcc-12-dev libgcc-s1 libgfortran-12-dev
  libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b
  libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72
  libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  libjs-jquery liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
  liblzma-dev liblzma5 libmagic-mgc libmagic1 libmd0
  libmodule-implementation-perl libmodule-runtime-conflicts-perl
  libmodule-runtime-perl libmoose-perl libmount1 libmro-compat-perl
  libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
  libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
  libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
  libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-8-0
  libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5
  libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
  libreadline-dev libreadline8 libregexp-ipv6-perl librtmp1 libsm6
  libsmartcols1 libssh2-1 libssl3 libstdc++-12-dev libstdc++6
  libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
  libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
  libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
  libtry-tiny-perl libubsan1 libuchardet0 liburi-perl libuuid1
  libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl
  libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
  libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4
  man-db mount node-html5shiv openssl pkg-config pkgconf pkgconf-bin
  po-debconf r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase
  r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel
  r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray
  r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
  r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest
  r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer
  r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-variantannotation
  r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-assertthat r-cran-bh
  r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli
  r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table
  r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis
  r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-foreach r-cran-formatr
  r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue
  r-cran-hms r-cran-httr r-cran-iterators r-cran-jsonlite r-cran-lambda.r
  r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix
  r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar
  r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits
  r-cran-progress r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp
  r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite
  r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble
  r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml
  r-cran-xml2 r-cran-yaml readline-common ucf unzip util-linux
  util-linux-extra x11-common xauth xdg-utils xz-utils zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc gcc-12-locales cpp-12-doc
  debtags dh-make postgresql-client-common gcc-12-doc gettext-doc
  libasprintf-dev libgettextpo-dev gfortran-doc gfortran-12-doc
  libcoarrays-dev groff liblapack-doc libboost-doc libboost1.74-doc
  libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev
  libboost-context1.74-dev libboost-contract1.74-dev
  libboost-coroutine1.74-dev libboost-date-time1.74-dev
  libboost-exception1.74-dev libboost-fiber1.74-dev
  libboost-filesystem1.74-dev libboost-graph1.74-dev
  libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
  libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
  libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
  libboost-program-options1.74-dev libboost-python1.74-dev
  libboost-random1.74-dev libboost-regex1.74-dev
  libboost-serialization1.74-dev libboost-stacktrace1.74-dev
  libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
  libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
  libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
  low-memory-monitor icu-doc liblzma-doc cryptsetup-bin ncurses-doc
  libscalar-number-perl readline-doc libstdc++-12-doc tcl8.6 tk8.6 libtool-doc
  gcj-jdk libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev m4-doc
  apparmor less www-browser nfs-common nodejs libmail-box-perl elpa-ess
  r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
  texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra
  texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
  r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle
  r-cran-knitr r-bioc-all r-cran-testthat r-cran-rmarkdown r-bioc-affy
  r-bioc-deseq2 r-bioc-annotate r-cran-batchjobs r-cran-bbmisc
  r-cran-doparallel r-cran-rmpi r-bioc-shortread r-cran-batchtools
  r-cran-mockery r-cran-webmockr r-cran-biocmanager r-bioc-hdf5array
  r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats r-bioc-edger
  r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown r-bioc-gviz
  r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma
  r-bioc-rhdf5 r-bioc-snpstats r-cran-ggplot2 r-cran-covr r-cran-roxygen2
  r-cran-ff r-cran-callr r-cran-htmltools r-cran-htmlwidgets r-cran-processx
  r-cran-ps r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-bench
  r-cran-desc r-cran-scales r-cran-spelling r-cran-r.utils r-cran-xts
  r-cran-nanotime r-cran-zoo r-cran-rmysql r-cran-unitizer r-cran-shiny
  r-cran-forcats r-cran-waldo r-cran-lubridate r-cran-httpuv r-cran-jpeg
  r-cran-readr r-cran-r.rsp r-cran-sf r-cran-lintr r-cran-tidyverse
  r-cran-getopt r-cran-base64enc r-cran-r.devices r-cran-formattable
  r-cran-palmerpenguins r-cran-survival r-cran-units r-cran-vdiffr
  r-cran-inline r-cran-fs r-cran-usethis r-cran-gert r-cran-gh r-cran-rvest
  r-cran-rlecuyer r-cran-brio r-cran-evaluate r-cran-pkgbuild r-cran-pkgload
  r-cran-tidyr r-cran-pkgdown r-cran-zeallot dosfstools kbd util-linux-locales
Recommended packages:
  devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
  libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
  libglib2.0-data shared-mime-info xdg-user-dirs javascript-common
  libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
  uuid-runtime libmail-sendmail-perl r-recommended r-doc-html
  r-bioc-biovizbase r-cran-testthat r-cran-mockery r-cran-decor r-cran-knitr
  r-cran-brio r-cran-httpuv r-cran-webutils r-cran-rmysql r-cran-rpostgresql
  r-cran-tidyr r-cran-bench r-cran-broom r-cran-callr r-cran-covr
  r-cran-ggplot2 r-cran-lobstr r-cran-rmarkdown r-cran-testit r-cran-survival
  r-cran-pkgload r-cran-sp r-cran-runit r-cran-sodium r-cran-lubridate
  r-cran-dbitest r-cran-htmltools r-cran-htmlwidgets r-cran-mockr
  r-cran-formattable r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl
  libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
  fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
  gfortran-12 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
  libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
  libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0
  libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
  libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
  libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
  libdevel-callchecker-perl libdevel-globaldestruction-perl
  libdevel-overloadinfo-perl libdevel-stacktrace-perl
  libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
  libencode-locale-perl libeval-closure-perl libexpat1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
  libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
  libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
  libjpeg62-turbo-dev libjs-jquery liblapack-dev liblapack3 liblerc4
  liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0
  libmodule-implementation-perl libmodule-runtime-conflicts-perl
  libmodule-runtime-perl libmoose-perl libmro-compat-perl
  libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
  libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
  libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
  libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
  libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
  libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5 libreadline-dev
  libregexp-ipv6-perl librtmp1 libsm6 libssh2-1 libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
  libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
  libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
  libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
  libxss1 libxt6 littler m4 man-db node-html5shiv openssl pkg-config pkgconf
  pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-annotationdbi
  r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio
  r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome
  r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata
  r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
  r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib
  r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors
  r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector
  r-bioc-zlibbioc r-cran-askpass r-cran-assertthat r-cran-bh r-cran-bit
  r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli
  r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table
  r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis
  r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-foreach r-cran-formatr
  r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue
  r-cran-hms r-cran-httr r-cran-iterators r-cran-jsonlite r-cran-lambda.r
  r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix
  r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar
  r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits
  r-cran-progress r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp
  r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite
  r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble
  r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml
  r-cran-xml2 r-cran-yaml sbuild-build-depends-main-dummy ucf unzip x11-common
  xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
  bsdutils cpp-12 g++-12 gcc-12 gcc-12-base libasan8 libatomic1 libblkid1
  libcc1-0 libgcc-12-dev libgcc-s1 libgomp1 liblzma5 libmount1 libpcre2-8-0
  libreadline8 libsmartcols1 libssl3 libstdc++-12-dev libstdc++6 libubsan1
  libuuid1 mount readline-common util-linux util-linux-extra xz-utils
27 upgraded, 273 newly installed, 0 to remove and 54 not upgraded.
Need to get 242 MB of archives.
After this operation, 581 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [964 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdutils armhf 1:2.38.1-4 [83.9 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38.1-4 [91.6 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf util-linux-extra armhf 2.38.1-4 [98.1 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf util-linux armhf 2.38.1-4 [1062 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf mount armhf 2.38.1-4 [126 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf readline-common all 8.2-1.2 [68.5 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 12.2.0-9+rpi1 [32.2 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 12.2.0-9+rpi1 [95.4 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 12.2.0-9+rpi1 [8224 B]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libasan8 armhf 12.2.0-9+rpi1 [2089 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 12.2.0-9+rpi1 [861 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12.2.0-9+rpi1 [37.2 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12.2.0-9+rpi1 [504 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf g++-12 armhf 12.2.0-9+rpi1 [7913 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-12-dev armhf 12.2.0-9+rpi1 [2025 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libgcc-12-dev armhf 12.2.0-9+rpi1 [725 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf gcc-12 armhf 12.2.0-9+rpi1 [14.2 MB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf cpp-12 armhf 12.2.0-9+rpi1 [7156 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 12.2.0-9+rpi1 [36.1 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libblkid1 armhf 2.38.1-4 [131 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf liblzma5 armhf 5.2.8-0.0 [175 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libmount1 armhf 2.38.1-4 [144 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-8-0 armhf 10.40-2 [222 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libreadline8 armhf 8.2-1.2 [142 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libuuid1 armhf 2.38.1-4 [27.1 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.1-1 [1341 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libssl3 armhf 3.0.7-1 [1614 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.7-1 [1349 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf xz-utils armhf 5.2.8-0.0 [333 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.1 [80.8 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-2 [19.4 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-2 [8556 B]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [570 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.1 [941 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-27 [152 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.39-2 [258 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.13.1-4.5 [281 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.5 [330 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.1-2 [308 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.1-2 [704 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-6 [496 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.50.0-1 [65.0 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.86.0-2 [322 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.1-2 [1214 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-9+rpi1 [238 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.5 [416 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 5.2.0-2+b1 [1832 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.10+ds-1 [214 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.10+ds-1 [68.6 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.10+ds-1 [58.3 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-1 [906 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2+b1 [237 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-6 [278 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.13-1 [680 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.2.2.20221110-1 [25.6 MB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-12-dev armhf 12.2.0-9+rpi1 [285 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf gfortran-12 armhf 12.2.0-9+rpi1 [7509 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:12.2.0-1+rpi1 [1432 B]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-2 [114 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.1-2 [2847 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3+20220423-2 [289 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3+20220423-2 [940 B]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.2-1.2 [122 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.40-2 [208 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.40-2 [199 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.40-2 [53.2 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.40-2 [644 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-14 [239 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-14 [232 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-14 [150 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-14 [569 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.39-2 [336 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.8-0.0 [232 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 72.1-3 [175 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 72.1-3 [9959 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1.1-1 [36.9 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libpkgconf3 armhf 1.8.0-11 [30.8 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf pkgconf-bin armhf 1.8.0-11 [27.6 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf pkgconf armhf 1.8.0-11 [25.6 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 1.8.0-11 [13.4 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.2.2.20221110-1 [4488 B]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.17-1 [90.4 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.44-1 [81.7 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-3 [9724 B]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.15-1 [12.6 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-2+b1 [12.2 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-2 [16.8 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2200-1+b2 [794 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.86.0-2 [318 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-8+b1 [55.9 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-17+b1 [9508 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b4 [4824 B]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf r-cran-littler armhf 0.3.17-1 [92.5 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf littler all 0.3.17-1 [14.4 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf node-html5shiv all 3.7.3+dfsg-5 [13.2 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.44.0-2 [600 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biobase armhf 2.58.0-2 [2111 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-s4vectors armhf 0.36.0-1 [2036 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-iranges armhf 2.32.0-1 [2214 kB]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dbi all 1.1.3-1 [687 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bit armhf 4.0.5-1 [1066 kB]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rlang armhf 1.0.6-1 [1621 kB]
Get:214 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cli armhf 3.4.1-1 [1242 kB]
Get:215 http://172.17.4.1/private bookworm-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:216 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB]
Get:217 http://172.17.4.1/private bookworm-staging/main armhf r-cran-vctrs armhf 0.5.1-1 [1318 kB]
Get:218 http://172.17.4.1/private bookworm-staging/main armhf r-cran-blob all 1.2.3-1 [49.5 kB]
Get:219 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fastmap armhf 1.1.0-1 [63.1 kB]
Get:220 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cachem armhf 1.0.6-1 [70.5 kB]
Get:221 http://172.17.4.1/private bookworm-staging/main armhf r-cran-memoise all 2.0.1-1 [53.8 kB]
Get:222 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:223 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get:224 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcpp armhf 1.0.9-1 [2036 kB]
Get:225 http://172.17.4.1/private bookworm-staging/main armhf r-cran-plogr all 0.2.0-3 [14.9 kB]
Get:226 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rsqlite armhf 2.2.19-1 [1005 kB]
Get:227 http://172.17.4.1/private bookworm-staging/main armhf r-cran-curl armhf 4.3.3+dfsg-1 [152 kB]
Get:228 http://172.17.4.1/private bookworm-staging/main armhf r-cran-jsonlite armhf 1.8.3+dfsg-1 [439 kB]
Get:229 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mime armhf 0.12-1 [35.6 kB]
Get:230 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sys armhf 3.4.1-1 [42.4 kB]
Get:231 http://172.17.4.1/private bookworm-staging/main armhf r-cran-askpass armhf 1.1-2 [22.3 kB]
Get:232 http://172.17.4.1/private bookworm-staging/main armhf r-cran-openssl armhf 2.0.4+dfsg-1 [389 kB]
Get:233 http://172.17.4.1/private bookworm-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:234 http://172.17.4.1/private bookworm-staging/main armhf r-cran-httr all 1.4.4+dfsg-1 [467 kB]
Get:235 http://172.17.4.1/private bookworm-staging/main armhf r-cran-png armhf 0.1-7-4 [39.9 kB]
Get:236 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-zlibbioc all 1.44.0+dfsg-1 [9200 B]
Get:237 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-xvector armhf 0.38.0-1 [606 kB]
Get:238 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:239 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcurl armhf 1.98-1.9+dfsg-1 [776 kB]
Get:240 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodbdata all 1.2.9-1 [11.7 MB]
Get:241 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodb all 1.34.3-1 [3920 kB]
Get:242 http://172.17.4.1/private bookworm-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
Get:243 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biostrings armhf 2.66.0-1 [13.8 MB]
Get:244 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-keggrest all 1.38.0+dfsg-1 [179 kB]
Get:245 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-annotationdbi all 1.60.0-1 [4696 kB]
Get:246 http://172.17.4.1/private bookworm-staging/main armhf r-cran-assertthat all 0.2.1-2 [56.5 kB]
Get:247 http://172.17.4.1/private bookworm-staging/main armhf r-cran-generics all 0.1.3-1 [81.4 kB]
Get:248 http://172.17.4.1/private bookworm-staging/main armhf r-cran-magrittr armhf 2.0.3-1 [200 kB]
Get:249 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fansi armhf 1.0.3-1 [611 kB]
Get:250 http://172.17.4.1/private bookworm-staging/main armhf r-cran-utf8 armhf 1.2.2-1 [129 kB]
Get:251 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pillar all 1.8.1+dfsg-1 [463 kB]
Get:252 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tibble armhf 3.1.8+dfsg-1 [516 kB]
Get:253 http://172.17.4.1/private bookworm-staging/main armhf r-cran-withr all 2.5.0-1 [236 kB]
Get:254 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tidyselect armhf 1.2.0+dfsg-1 [222 kB]
Get:255 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dplyr armhf 1.0.10-1 [1230 kB]
Get:256 http://172.17.4.1/private bookworm-staging/main armhf r-cran-purrr armhf 0.3.5-1 [400 kB]
Get:257 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dbplyr all 2.2.1+dfsg-1 [947 kB]
Get:258 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rappdirs armhf 0.3.3-1 [47.3 kB]
Get:259 http://172.17.4.1/private bookworm-staging/main armhf r-cran-filelock armhf 1.0.2-2 [24.2 kB]
Get:260 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocfilecache all 2.6.0+dfsg-2 [296 kB]
Get:261 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocio all 1.8.0+dfsg-1 [201 kB]
Get:262 http://172.17.4.1/private bookworm-staging/main armhf r-cran-formatr all 1.12-1 [151 kB]
Get:263 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:264 http://172.17.4.1/private bookworm-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:265 http://172.17.4.1/private bookworm-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:266 http://172.17.4.1/private bookworm-staging/main armhf r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get:267 http://172.17.4.1/private bookworm-staging/main armhf r-cran-codetools all 0.2-18-1 [91.8 kB]
Get:268 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bh all 1.74.0-2 [5524 B]
Get:269 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cpp11 all 0.4.3-1 [223 kB]
Get:270 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocparallel armhf 1.32.4-1 [1313 kB]
Get:271 http://172.17.4.1/private bookworm-staging/main armhf r-cran-xml armhf 3.99-0.12-1 [1721 kB]
Get:272 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ellipsis armhf 0.3.2-2 [35.1 kB]
Get:273 http://172.17.4.1/private bookworm-staging/main armhf r-cran-hms all 1.1.2-1 [104 kB]
Get:274 http://172.17.4.1/private bookworm-staging/main armhf r-cran-prettyunits all 1.1.1-2 [39.1 kB]
Get:275 http://172.17.4.1/private bookworm-staging/main armhf r-cran-progress all 1.2.2-2 [88.9 kB]
Get:276 http://172.17.4.1/private bookworm-staging/main armhf r-cran-stringi armhf 1.7.8-1+b1 [837 kB]
Get:277 http://172.17.4.1/private bookworm-staging/main armhf r-cran-stringr all 1.4.1-1 [202 kB]
Get:278 http://172.17.4.1/private bookworm-staging/main armhf r-cran-digest armhf 0.6.30-2 [177 kB]
Get:279 http://172.17.4.1/private bookworm-staging/main armhf r-cran-xml2 armhf 1.3.3-1 [276 kB]
Get:280 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biomart all 2.54.0+dfsg-1 [442 kB]
Get:281 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomicranges armhf 1.50.1+dfsg-1 [1797 kB]
Get:282 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rhtslib armhf 2.0.0+dfsg-1 [1189 kB]
Get:283 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rsamtools armhf 2.14.0-1 [3675 kB]
Get:284 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrixstats armhf 0.63.0-1 [453 kB]
Get:285 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-matrixgenerics all 1.10.0-1 [302 kB]
Get:286 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-45-3 [1176 kB]
Get:287 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.5-1-1 [3685 kB]
Get:288 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-delayedarray armhf 0.24.0+dfsg-1 [1925 kB]
Get:289 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-summarizedexperiment all 1.28.0+dfsg-1 [2018 kB]
Get:290 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomicalignments armhf 1.34.0-1 [2109 kB]
Get:291 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rjson armhf 0.2.21-1 [137 kB]
Get:292 http://172.17.4.1/private bookworm-staging/main armhf r-cran-yaml armhf 2.3.6-1 [92.2 kB]
Get:293 http://172.17.4.1/private bookworm-staging/main armhf r-cran-restfulr armhf 0.0.15-1 [348 kB]
Get:294 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rtracklayer armhf 1.58.0-1 [5072 kB]
Get:295 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-bsgenome all 1.66.1-1 [6986 kB]
Get:296 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomicfeatures all 1.50.2+dfsg-1 [1665 kB]
Get:297 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-variantannotation armhf 1.44.0-1 [3528 kB]
Get:298 http://172.17.4.1/private bookworm-staging/main armhf r-cran-data.table armhf 1.14.6+dfsg-1 [1688 kB]
Get:299 http://172.17.4.1/private bookworm-staging/main armhf r-cran-iterators all 1.0.14-1 [337 kB]
Get:300 http://172.17.4.1/private bookworm-staging/main armhf r-cran-foreach all 1.5.2-1 [122 kB]
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Setting up r-cran-dplyr (1.0.10-1) ...
Setting up r-cran-dbplyr (2.2.1+dfsg-1) ...
Setting up r-cran-rsqlite (2.2.19-1) ...
Setting up r-cran-progress (1.2.2-2) ...
Setting up r-bioc-biocfilecache (2.6.0+dfsg-2) ...
Setting up r-bioc-genomicranges (1.50.1+dfsg-1) ...
Setting up r-bioc-biostrings (2.66.0-1) ...
Setting up r-bioc-rsamtools (2.14.0-1) ...
Setting up r-bioc-summarizedexperiment (1.28.0+dfsg-1) ...
Setting up r-bioc-keggrest (1.38.0+dfsg-1) ...
Setting up r-bioc-annotationdbi (1.60.0-1) ...
Setting up r-bioc-biomart (2.54.0+dfsg-1) ...
Setting up r-bioc-genomicalignments (1.34.0-1) ...
Setting up r-bioc-rtracklayer (1.58.0-1) ...
Setting up r-bioc-genomicfeatures (1.50.2+dfsg-1) ...
Setting up r-bioc-bsgenome (1.66.1-1) ...
Setting up r-bioc-variantannotation (1.44.0-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.35-2+rpi1) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-9+rpi1 gcc-12_12.2.0-9+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-9+rpi1 libstdc++6_12.2.0-9+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-9+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 dctrl-tools_2.24-3 debconf_1.5.79 debhelper_13.11.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig_2.13.1-4.5 fontconfig-config_2.13.1-4.5 fonts-dejavu-core_2.37-2 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-9+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-9+rpi1 gcc-12-base_12.2.0-9+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 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+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: r-bioc-titancna
Binary: r-bioc-titancna
Architecture: any
Version: 1.36.0-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://bioconductor.org/packages/TitanCNA/
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-titancna
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-titancna.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.31.6), r-bioc-iranges, r-bioc-genomicranges, r-bioc-variantannotation, r-cran-foreach, r-bioc-genomeinfodb, r-cran-data.table, r-cran-dplyr
Package-List:
 r-bioc-titancna deb gnu-r optional arch=any
Checksums-Sha1:
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Checksums-Sha256:
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.9r0XtDgg/trustedkeys.kbx': General error
gpgv: Signature made Tue Nov 22 06:49:55 2022 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./r-bioc-titancna_1.36.0-1.dsc
dpkg-source: info: extracting r-bioc-titancna in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-titancna_1.36.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-titancna_1.36.0-1.debian.tar.xz

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=f89ee6850c51463faed427366eb0b008
JOURNAL_STREAM=8:31299
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-4413df59-42ec-47d4-a75b-4bb28b763311
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c44534
XDG_SESSION_TYPE=unspecified

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-bioc-titancna
dpkg-buildpackage: info: source version 1.36.0-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules binary-arch
dh binary-arch --buildsystem R
   dh_update_autotools_config -a -O--buildsystem=R
   dh_autoreconf -a -O--buildsystem=R
   dh_auto_configure -a -O--buildsystem=R
   dh_auto_build -a -O--buildsystem=R
   dh_auto_test -a -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=R
   dh_prep -a -O--buildsystem=R
   dh_auto_install --destdir=debian/r-bioc-titancna/ -a -O--buildsystem=R
I: R Package: TitanCNA Version: 1.36.0
I: Building using R version 4.2.2.20221110-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Tue, 22 Nov 2022 07:37:16 +0100
	mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-titancna/usr/lib/R/site-library
	R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-titancna/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 22 Nov 2022 07:37:16 +0100'"
* installing *source* package ‘TitanCNA’ ...
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c fwd_backC_clonalCN.c -o fwd_backC_clonalCN.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c getPositionOverlapC.c -o getPositionOverlapC.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c register.c -o register.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c viterbiC_clonalCN.c -o viterbiC_clonalCN.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o TitanCNA.so fwd_backC_clonalCN.o getPositionOverlapC.o register.o viterbiC_clonalCN.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-titancna/usr/lib/R/site-library/00LOCK-r-bioc-titancna-1.36.0/00new/TitanCNA/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import ‘GenomicRanges::shift’ by ‘data.table::shift’ when loading ‘TitanCNA’
Warning: replacing previous import ‘IRanges::collapse’ by ‘dplyr::collapse’ when loading ‘TitanCNA’
Warning: replacing previous import ‘data.table::last’ by ‘dplyr::last’ when loading ‘TitanCNA’
Warning: replacing previous import ‘GenomicRanges::union’ by ‘dplyr::union’ when loading ‘TitanCNA’
Warning: replacing previous import ‘IRanges::slice’ by ‘dplyr::slice’ when loading ‘TitanCNA’
Warning: replacing previous import ‘GenomeInfoDb::intersect’ by ‘dplyr::intersect’ when loading ‘TitanCNA’
Warning: replacing previous import ‘GenomicRanges::setdiff’ by ‘dplyr::setdiff’ when loading ‘TitanCNA’
Warning: replacing previous import ‘data.table::first’ by ‘dplyr::first’ when loading ‘TitanCNA’
Warning: replacing previous import ‘IRanges::desc’ by ‘dplyr::desc’ when loading ‘TitanCNA’
Warning: replacing previous import ‘BiocGenerics::combine’ by ‘dplyr::combine’ when loading ‘TitanCNA’
Warning: replacing previous import ‘data.table::between’ by ‘dplyr::between’ when loading ‘TitanCNA’
Warning: replacing previous import ‘dplyr::select’ by ‘VariantAnnotation::select’ when loading ‘TitanCNA’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import ‘GenomicRanges::shift’ by ‘data.table::shift’ when loading ‘TitanCNA’
Warning: replacing previous import ‘IRanges::collapse’ by ‘dplyr::collapse’ when loading ‘TitanCNA’
Warning: replacing previous import ‘data.table::last’ by ‘dplyr::last’ when loading ‘TitanCNA’
Warning: replacing previous import ‘GenomicRanges::union’ by ‘dplyr::union’ when loading ‘TitanCNA’
Warning: replacing previous import ‘IRanges::slice’ by ‘dplyr::slice’ when loading ‘TitanCNA’
Warning: replacing previous import ‘GenomeInfoDb::intersect’ by ‘dplyr::intersect’ when loading ‘TitanCNA’
Warning: replacing previous import ‘GenomicRanges::setdiff’ by ‘dplyr::setdiff’ when loading ‘TitanCNA’
Warning: replacing previous import ‘data.table::first’ by ‘dplyr::first’ when loading ‘TitanCNA’
Warning: replacing previous import ‘IRanges::desc’ by ‘dplyr::desc’ when loading ‘TitanCNA’
Warning: replacing previous import ‘BiocGenerics::combine’ by ‘dplyr::combine’ when loading ‘TitanCNA’
Warning: replacing previous import ‘data.table::between’ by ‘dplyr::between’ when loading ‘TitanCNA’
Warning: replacing previous import ‘dplyr::select’ by ‘VariantAnnotation::select’ when loading ‘TitanCNA’
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning: replacing previous import ‘GenomicRanges::shift’ by ‘data.table::shift’ when loading ‘TitanCNA’
Warning: replacing previous import ‘IRanges::collapse’ by ‘dplyr::collapse’ when loading ‘TitanCNA’
Warning: replacing previous import ‘data.table::last’ by ‘dplyr::last’ when loading ‘TitanCNA’
Warning: replacing previous import ‘GenomicRanges::union’ by ‘dplyr::union’ when loading ‘TitanCNA’
Warning: replacing previous import ‘IRanges::slice’ by ‘dplyr::slice’ when loading ‘TitanCNA’
Warning: replacing previous import ‘GenomeInfoDb::intersect’ by ‘dplyr::intersect’ when loading ‘TitanCNA’
Warning: replacing previous import ‘GenomicRanges::setdiff’ by ‘dplyr::setdiff’ when loading ‘TitanCNA’
Warning: replacing previous import ‘data.table::first’ by ‘dplyr::first’ when loading ‘TitanCNA’
Warning: replacing previous import ‘IRanges::desc’ by ‘dplyr::desc’ when loading ‘TitanCNA’
Warning: replacing previous import ‘BiocGenerics::combine’ by ‘dplyr::combine’ when loading ‘TitanCNA’
Warning: replacing previous import ‘data.table::between’ by ‘dplyr::between’ when loading ‘TitanCNA’
Warning: replacing previous import ‘dplyr::select’ by ‘VariantAnnotation::select’ when loading ‘TitanCNA’
** testing if installed package keeps a record of temporary installation path
* DONE (TitanCNA)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 301.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 304.
W: Ignoring specified R dependency: R (>= 3.5.1)
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.31.6)
I: Using r-bioc-iranges for Imports:IRanges (>= 2.6.1)
I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.24.3)
I: Using r-bioc-variantannotation for Imports:VariantAnnotation (>= 1.18.7)
I: Using r-cran-foreach for Imports:foreach (>= 1.4.3)
I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.8.7)
I: Using r-cran-data.table for Imports:data.table (>= 1.10.4)
I: Using r-cran-dplyr for Imports:dplyr (>= 0.5.0)
I: BioConductor API version: r-api-bioc-3.16
I: Use r-bioc-titancna as Debian binary package for variables substitution
   dh_installdocs -a -O--buildsystem=R
   dh_installchangelogs -a -O--buildsystem=R
   dh_installsystemduser -a -O--buildsystem=R
   dh_perl -a -O--buildsystem=R
   dh_link -a -O--buildsystem=R
   dh_strip_nondeterminism -a -O--buildsystem=R
   dh_compress -a -O--buildsystem=R
   debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
find debian -iname "*.rda" -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_missing -a -O--buildsystem=R
   dh_dwz -a -O--buildsystem=R
   dh_strip -a -O--buildsystem=R
   dh_makeshlibs -a -O--buildsystem=R
   dh_shlibdeps -a -O--buildsystem=R
   dh_installdeb -a -O--buildsystem=R
   dh_gencontrol -a -O--buildsystem=R
   dh_md5sums -a -O--buildsystem=R
   dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-titancna-dbgsym' in '../r-bioc-titancna-dbgsym_1.36.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-titancna' in '../r-bioc-titancna_1.36.0-1_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../r-bioc-titancna_1.36.0-1_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../r-bioc-titancna_1.36.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-12-07T12:27:08Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-bioc-titancna_1.36.0-1_armhf.changes:
---------------------------------------

Format: 1.8
Date: Tue, 22 Nov 2022 07:37:16 +0100
Source: r-bioc-titancna
Binary: r-bioc-titancna r-bioc-titancna-dbgsym
Architecture: armhf
Version: 1.36.0-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 r-bioc-titancna - Subclonal copy number and LOH prediction from whole genome sequen
Changes:
 r-bioc-titancna (1.36.0-1) unstable; urgency=medium
 .
   * New upstream version
Checksums-Sha1:
 fa4dfdf54f3862ea716186b191adccc9c563dc1e 15664 r-bioc-titancna-dbgsym_1.36.0-1_armhf.deb
 8da9b335aaf053ee04fce25a8d6476fb4d532e68 12915 r-bioc-titancna_1.36.0-1_armhf.buildinfo
 7473e0800165412c5738df8123d6e385867c9626 3899524 r-bioc-titancna_1.36.0-1_armhf.deb
Checksums-Sha256:
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 0e3de6aac15fc6e1a5af75b069e0be77a9ce358531487752d5bcc124939a507a 12915 r-bioc-titancna_1.36.0-1_armhf.buildinfo
 1ce5ec20b1a1cf2d1c91c4ef91df35574cdd50bc1a70c1949c8d35b1dd9ebc95 3899524 r-bioc-titancna_1.36.0-1_armhf.deb
Files:
 6bd857f00d879f50896b2831697da661 15664 debug optional r-bioc-titancna-dbgsym_1.36.0-1_armhf.deb
 a9812909f6bc4687188d26eed5d858c0 12915 gnu-r optional r-bioc-titancna_1.36.0-1_armhf.buildinfo
 54ef6beb1c4b2b3477e082658588f048 3899524 gnu-r optional r-bioc-titancna_1.36.0-1_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: r-bioc-titancna
Binary: r-bioc-titancna r-bioc-titancna-dbgsym
Architecture: armhf
Version: 1.36.0-1
Checksums-Md5:
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 54ef6beb1c4b2b3477e082658588f048 3899524 r-bioc-titancna_1.36.0-1_armhf.deb
Checksums-Sha1:
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 7473e0800165412c5738df8123d6e385867c9626 3899524 r-bioc-titancna_1.36.0-1_armhf.deb
Checksums-Sha256:
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 1ce5ec20b1a1cf2d1c91c4ef91df35574cdd50bc1a70c1949c8d35b1dd9ebc95 3899524 r-bioc-titancna_1.36.0-1_armhf.deb
Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Wed, 07 Dec 2022 12:27:06 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
 autoconf (= 2.71-2),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.21-10),
 autotools-dev (= 20220109.1),
 base-files (= 12.3+rpi1),
 base-passwd (= 3.6.1),
 bash (= 5.2~rc2-2),
 binutils (= 2.39-6+rpi1),
 binutils-arm-linux-gnueabihf (= 2.39-6+rpi1),
 binutils-common (= 2.39-6+rpi1),
 bsdextrautils (= 2.38.1-4),
 bsdutils (= 1:2.38.1-4),
 build-essential (= 12.9),
 bzip2 (= 1.0.8-5+b2),
 ca-certificates (= 20211016),
 coreutils (= 9.1-1),
 cpp (= 4:12.2.0-1+rpi1),
 cpp-12 (= 12.2.0-9+rpi1),
 dash (= 0.5.11+git20210903+057cd650a4ed-9),
 dctrl-tools (= 2.24-3),
 debconf (= 1.5.79),
 debhelper (= 13.11.1),
 debianutils (= 5.7-0.3),
 dh-autoreconf (= 20),
 dh-r (= 20210816),
 dh-strip-nondeterminism (= 1.13.0-2),
 diffutils (= 1:3.8-1),
 dpkg (= 1.21.9+rpi1),
 dpkg-dev (= 1.21.9+rpi1),
 dwz (= 0.14+20220924-2),
 file (= 1:5.41-4),
 findutils (= 4.9.0-3),
 fontconfig (= 2.13.1-4.5),
 fontconfig-config (= 2.13.1-4.5),
 fonts-dejavu-core (= 2.37-2),
 g++ (= 4:12.2.0-1+rpi1),
 g++-12 (= 12.2.0-9+rpi1),
 gcc (= 4:12.2.0-1+rpi1),
 gcc-12 (= 12.2.0-9+rpi1),
 gcc-12-base (= 12.2.0-9+rpi1),
 gettext (= 0.21-10),
 gettext-base (= 0.21-10),
 gfortran (= 4:12.2.0-1+rpi1),
 gfortran-12 (= 12.2.0-9+rpi1),
 grep (= 3.7-1),
 groff-base (= 1.22.4-9),
 gzip (= 1.12-1),
 hostname (= 3.23),
 icu-devtools (= 72.1-3),
 init-system-helpers (= 1.64),
 intltool-debian (= 0.35.0+20060710.6),
 libacl1 (= 2.3.1-1),
 libalgorithm-c3-perl (= 0.11-2),
 libarchive-zip-perl (= 1.68-1),
 libasan8 (= 12.2.0-9+rpi1),
 libatomic1 (= 12.2.0-9+rpi1),
 libattr1 (= 1:2.5.1-1),
 libaudit-common (= 1:3.0.7-1.1),
 libaudit1 (= 1:3.0.7-1.1),
 libb-hooks-endofscope-perl (= 0.26-1),
 libb-hooks-op-check-perl (= 0.22-2+b1),
 libbinutils (= 2.39-6+rpi1),
 libblas-dev (= 3.10.1-2),
 libblas3 (= 3.10.1-2),
 libblkid1 (= 2.38.1-4),
 libboost-dev (= 1.74.0.3+b4),
 libboost1.74-dev (= 1.74.0-17+b1),
 libbrotli1 (= 1.0.9-2+b2),
 libbsd0 (= 0.11.7-1),
 libbz2-1.0 (= 1.0.8-5+b2),
 libbz2-dev (= 1.0.8-5+b2),
 libc-bin (= 2.35-2+rpi1),
 libc-dev-bin (= 2.35-2+rpi1),
 libc6 (= 2.35-2+rpi1),
 libc6-dev (= 2.35-2+rpi1),
 libcairo2 (= 1.16.0-6),
 libcap-ng0 (= 0.8.3-1),
 libcap2 (= 1:2.44-1),
 libcc1-0 (= 12.2.0-9+rpi1),
 libclass-c3-perl (= 0.35-2),
 libclass-load-perl (= 0.25-1),
 libclass-load-xs-perl (= 0.10-2+b1),
 libclone-perl (= 0.46-1),
 libcom-err2 (= 1.46.6~rc1-1),
 libcrypt-dev (= 1:4.4.28-2),
 libcrypt1 (= 1:4.4.28-2),
 libctf-nobfd0 (= 2.39-6+rpi1),
 libctf0 (= 2.39-6+rpi1),
 libcurl3-gnutls (= 7.86.0-2),
 libcurl4 (= 7.86.0-2),
 libdata-optlist-perl (= 0.112-1),
 libdatrie1 (= 0.2.13-2+b2),
 libdb5.3 (= 5.3.28+dfsg1-0.10),
 libdebconfclient0 (= 0.264),
 libdebhelper-perl (= 13.11.1),
 libdeflate0 (= 1.14-1),
 libdevel-callchecker-perl (= 0.008-2),
 libdevel-globaldestruction-perl (= 0.14-4),
 libdevel-overloadinfo-perl (= 0.007-1),
 libdevel-stacktrace-perl (= 2.0400-2),
 libdist-checkconflicts-perl (= 0.11-2),
 libdpkg-perl (= 1.21.9+rpi1),
 libdynaloader-functions-perl (= 0.003-3),
 libelf1 (= 0.187-2+rpi2),
 libencode-locale-perl (= 1.05-3),
 libeval-closure-perl (= 0.14-3),
 libexpat1 (= 2.5.0-1),
 libffi8 (= 3.4.2-4),
 libfile-stripnondeterminism-perl (= 1.13.0-2),
 libfile-which-perl (= 1.27-2),
 libfontconfig1 (= 2.13.1-4.5),
 libfreetype6 (= 2.12.1+dfsg-3),
 libfribidi0 (= 1.0.8-2.1),
 libgcc-12-dev (= 12.2.0-9+rpi1),
 libgcc-s1 (= 12.2.0-9+rpi1),
 libgcrypt20 (= 1.10.1-2+b2),
 libgdbm-compat4 (= 1.23-3),
 libgdbm6 (= 1.23-3),
 libgfortran-12-dev (= 12.2.0-9+rpi1),
 libgfortran5 (= 12.2.0-9+rpi1),
 libglib2.0-0 (= 2.74.1-2),
 libgmp10 (= 2:6.2.1+dfsg1-1.1),
 libgnutls30 (= 3.7.8-2),
 libgomp1 (= 12.2.0-9+rpi1),
 libgpg-error0 (= 1.45-2),
 libgraphite2-3 (= 1.3.14-1),
 libgssapi-krb5-2 (= 1.20-1),
 libharfbuzz0b (= 5.2.0-2+b1),
 libhogweed6 (= 3.8.1-2),
 libhttp-date-perl (= 6.05-2),
 libhttp-message-perl (= 6.44-1),
 libice6 (= 2:1.0.10-1),
 libicu-dev (= 72.1-3),
 libicu72 (= 72.1-3),
 libidn2-0 (= 2.3.3-1),
 libio-html-perl (= 1.004-3),
 libisl23 (= 0.25-1),
 libjbig0 (= 2.1-3.1+b2),
 libjpeg-dev (= 1:2.1.2-1),
 libjpeg62-turbo (= 1:2.1.2-1),
 libjpeg62-turbo-dev (= 1:2.1.2-1),
 libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
 libk5crypto3 (= 1.20-1),
 libkeyutils1 (= 1.6.3-1),
 libkrb5-3 (= 1.20-1),
 libkrb5support0 (= 1.20-1),
 liblapack-dev (= 3.10.1-2),
 liblapack3 (= 3.10.1-2),
 libldap-2.5-0 (= 2.5.13+dfsg-2+rpi1),
 liblerc4 (= 4.0.0+ds-2),
 liblwp-mediatypes-perl (= 6.04-1),
 liblz4-1 (= 1.9.4-1+rpi1),
 liblzma-dev (= 5.2.8-0.0),
 liblzma5 (= 5.2.8-0.0),
 libmagic-mgc (= 1:5.41-4),
 libmagic1 (= 1:5.41-4),
 libmd0 (= 1.0.4-2),
 libmodule-implementation-perl (= 0.09-2),
 libmodule-runtime-conflicts-perl (= 0.003-2),
 libmodule-runtime-perl (= 0.016-2),
 libmoose-perl (= 2.2200-1+b2),
 libmount1 (= 2.38.1-4),
 libmpc3 (= 1.2.1-2),
 libmpfr6 (= 4.1.0-3),
 libmro-compat-perl (= 0.15-1),
 libnamespace-clean-perl (= 0.27-2),
 libncurses-dev (= 6.3+20220423-2),
 libncurses5-dev (= 6.3+20220423-2),
 libncurses6 (= 6.3+20220423-2),
 libncursesw6 (= 6.3+20220423-2),
 libnettle8 (= 3.8.1-2),
 libnghttp2-14 (= 1.50.0-1),
 libnsl-dev (= 1.3.0-2),
 libnsl2 (= 1.3.0-2),
 libp11-kit0 (= 0.24.1-1),
 libpackage-deprecationmanager-perl (= 0.17-2),
 libpackage-stash-perl (= 0.40-1),
 libpackage-stash-xs-perl (= 0.30-1+b1),
 libpam-modules (= 1.5.2-5),
 libpam-modules-bin (= 1.5.2-5),
 libpam-runtime (= 1.5.2-5),
 libpam0g (= 1.5.2-5),
 libpango-1.0-0 (= 1.50.10+ds-1),
 libpangocairo-1.0-0 (= 1.50.10+ds-1),
 libpangoft2-1.0-0 (= 1.50.10+ds-1),
 libpaper-utils (= 1.1.28),
 libpaper1 (= 1.1.28),
 libparams-classify-perl (= 0.015-2+b1),
 libparams-util-perl (= 1.102-2+b1),
 libpcre16-3 (= 2:8.39-14),
 libpcre2-16-0 (= 10.40-2),
 libpcre2-32-0 (= 10.40-2),
 libpcre2-8-0 (= 10.40-2),
 libpcre2-dev (= 10.40-2),
 libpcre2-posix3 (= 10.40-2),
 libpcre3 (= 2:8.39-14),
 libpcre3-dev (= 2:8.39-14),
 libpcre32-3 (= 2:8.39-14),
 libpcrecpp0v5 (= 2:8.39-14),
 libperl5.36 (= 5.36.0-4),
 libpipeline1 (= 1.5.7-1),
 libpixman-1-0 (= 0.42.2-1),
 libpkgconf3 (= 1.8.0-11),
 libpng-dev (= 1.6.39-2),
 libpng16-16 (= 1.6.39-2),
 libpsl5 (= 0.21.0-1.2),
 libreadline-dev (= 8.2-1.2),
 libreadline8 (= 8.2-1.2),
 libregexp-ipv6-perl (= 0.03-3),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
 libsasl2-2 (= 2.1.28+dfsg-8),
 libsasl2-modules-db (= 2.1.28+dfsg-8),
 libseccomp2 (= 2.5.4-1+rpi1),
 libselinux1 (= 3.4-1),
 libsm6 (= 2:1.2.3-1),
 libsmartcols1 (= 2.38.1-4),
 libssh2-1 (= 1.10.0-3+b1),
 libssl3 (= 3.0.7-1),
 libstdc++-12-dev (= 12.2.0-9+rpi1),
 libstdc++6 (= 12.2.0-9+rpi1),
 libsub-exporter-perl (= 0.988-1),
 libsub-exporter-progressive-perl (= 0.001013-3),
 libsub-identify-perl (= 0.14-3),
 libsub-install-perl (= 0.928-3),
 libsub-name-perl (= 0.26-2+b1),
 libsub-override-perl (= 0.09-4),
 libswitch-perl (= 2.17-3),
 libsystemd0 (= 251.5-1+rpi1),
 libtasn1-6 (= 4.19.0-2),
 libtcl8.6 (= 8.6.13+dfsg-1),
 libthai-data (= 0.1.29-1),
 libthai0 (= 0.1.29-1),
 libtiff5 (= 4.4.0-6),
 libtimedate-perl (= 2.3300-2),
 libtinfo6 (= 6.3+20220423-2),
 libtirpc-common (= 1.3.3+ds-1),
 libtirpc-dev (= 1.3.3+ds-1),
 libtirpc3 (= 1.3.3+ds-1),
 libtk8.6 (= 8.6.13-1),
 libtool (= 2.4.7-5),
 libtry-tiny-perl (= 0.31-2),
 libubsan1 (= 12.2.0-9+rpi1),
 libuchardet0 (= 0.0.7-1),
 libudev1 (= 251.5-1+rpi1),
 libunistring2 (= 1.0-2),
 liburi-perl (= 5.17-1),
 libuuid1 (= 2.38.1-4),
 libvariable-magic-perl (= 0.63-1+b1),
 libwebp7 (= 1.2.2-2+b1),
 libwww-curl-perl (= 4.17-8+b1),
 libwww-curl-simple-perl (= 0.100191-3),
 libx11-6 (= 2:1.8.1-2),
 libx11-data (= 2:1.8.1-2),
 libxau6 (= 1:1.0.9-1),
 libxcb-render0 (= 1.15-1),
 libxcb-shm0 (= 1.15-1),
 libxcb1 (= 1.15-1),
 libxdmcp6 (= 1:1.1.2-3),
 libxext6 (= 2:1.3.4-1),
 libxft2 (= 2.3.6-1),
 libxml2 (= 2.9.14+dfsg-1.1),
 libxmuu1 (= 2:1.1.3-3),
 libxrender1 (= 1:0.9.10-1.1),
 libxss1 (= 1:1.2.3-1),
 libxt6 (= 1:1.2.1-1),
 libzstd1 (= 1.5.2+dfsg-1),
 linux-libc-dev (= 5.19.6-1+rpi1),
 littler (= 0.3.17-1),
 login (= 1:4.12.3+dfsg1-1),
 lsb-base (= 11.4+rpi1),
 m4 (= 1.4.19-1),
 make (= 4.3-4.1),
 man-db (= 2.11.1-1),
 mawk (= 1.3.4.20200120-3.1),
 ncurses-base (= 6.3+20220423-2),
 ncurses-bin (= 6.3+20220423-2),
 node-html5shiv (= 3.7.3+dfsg-5),
 openssl (= 3.0.7-1),
 patch (= 2.7.6-7),
 perl (= 5.36.0-4),
 perl-base (= 5.36.0-4),
 perl-modules-5.36 (= 5.36.0-4),
 pkg-config (= 1.8.0-11),
 pkgconf (= 1.8.0-11),
 pkgconf-bin (= 1.8.0-11),
 po-debconf (= 1.0.21+nmu1),
 r-base-core (= 4.2.2.20221110-1),
 r-base-dev (= 4.2.2.20221110-1),
 r-bioc-annotationdbi (= 1.60.0-1),
 r-bioc-biobase (= 2.58.0-2),
 r-bioc-biocfilecache (= 2.6.0+dfsg-2),
 r-bioc-biocgenerics (= 0.44.0-2),
 r-bioc-biocio (= 1.8.0+dfsg-1),
 r-bioc-biocparallel (= 1.32.4-1),
 r-bioc-biomart (= 2.54.0+dfsg-1),
 r-bioc-biostrings (= 2.66.0-1),
 r-bioc-bsgenome (= 1.66.1-1),
 r-bioc-delayedarray (= 0.24.0+dfsg-1),
 r-bioc-genomeinfodb (= 1.34.3-1),
 r-bioc-genomeinfodbdata (= 1.2.9-1),
 r-bioc-genomicalignments (= 1.34.0-1),
 r-bioc-genomicfeatures (= 1.50.2+dfsg-1),
 r-bioc-genomicranges (= 1.50.1+dfsg-1),
 r-bioc-iranges (= 2.32.0-1),
 r-bioc-keggrest (= 1.38.0+dfsg-1),
 r-bioc-matrixgenerics (= 1.10.0-1),
 r-bioc-rhtslib (= 2.0.0+dfsg-1),
 r-bioc-rsamtools (= 2.14.0-1),
 r-bioc-rtracklayer (= 1.58.0-1),
 r-bioc-s4vectors (= 0.36.0-1),
 r-bioc-summarizedexperiment (= 1.28.0+dfsg-1),
 r-bioc-variantannotation (= 1.44.0-1),
 r-bioc-xvector (= 0.38.0-1),
 r-bioc-zlibbioc (= 1.44.0+dfsg-1),
 r-cran-askpass (= 1.1-2),
 r-cran-assertthat (= 0.2.1-2),
 r-cran-bh (= 1.74.0-2),
 r-cran-bit (= 4.0.5-1),
 r-cran-bit64 (= 4.0.5-1),
 r-cran-bitops (= 1.0-7-1),
 r-cran-blob (= 1.2.3-1),
 r-cran-cachem (= 1.0.6-1),
 r-cran-cli (= 3.4.1-1),
 r-cran-codetools (= 0.2-18-1),
 r-cran-cpp11 (= 0.4.3-1),
 r-cran-crayon (= 1.5.2-1),
 r-cran-curl (= 4.3.3+dfsg-1),
 r-cran-data.table (= 1.14.6+dfsg-1),
 r-cran-dbi (= 1.1.3-1),
 r-cran-dbplyr (= 2.2.1+dfsg-1),
 r-cran-digest (= 0.6.30-2),
 r-cran-dplyr (= 1.0.10-1),
 r-cran-ellipsis (= 0.3.2-2),
 r-cran-fansi (= 1.0.3-1),
 r-cran-fastmap (= 1.1.0-1),
 r-cran-filelock (= 1.0.2-2),
 r-cran-foreach (= 1.5.2-1),
 r-cran-formatr (= 1.12-1),
 r-cran-futile.logger (= 1.4.3-4),
 r-cran-futile.options (= 1.0.1-3),
 r-cran-generics (= 0.1.3-1),
 r-cran-glue (= 1.6.2-1),
 r-cran-hms (= 1.1.2-1),
 r-cran-httr (= 1.4.4+dfsg-1),
 r-cran-iterators (= 1.0.14-1),
 r-cran-jsonlite (= 1.8.3+dfsg-1),
 r-cran-lambda.r (= 1.2.4-2),
 r-cran-lattice (= 0.20-45-3),
 r-cran-lifecycle (= 1.0.3+dfsg-1),
 r-cran-littler (= 0.3.17-1),
 r-cran-magrittr (= 2.0.3-1),
 r-cran-matrix (= 1.5-1-1),
 r-cran-matrixstats (= 0.63.0-1),
 r-cran-memoise (= 2.0.1-1),
 r-cran-mime (= 0.12-1),
 r-cran-openssl (= 2.0.4+dfsg-1),
 r-cran-pillar (= 1.8.1+dfsg-1),
 r-cran-pkgconfig (= 2.0.3-2),
 r-cran-pkgkitten (= 0.2.2-2),
 r-cran-plogr (= 0.2.0-3),
 r-cran-png (= 0.1-7-4),
 r-cran-prettyunits (= 1.1.1-2),
 r-cran-progress (= 1.2.2-2),
 r-cran-purrr (= 0.3.5-1),
 r-cran-r6 (= 2.5.1-1),
 r-cran-rappdirs (= 0.3.3-1),
 r-cran-rcpp (= 1.0.9-1),
 r-cran-rcurl (= 1.98-1.9+dfsg-1),
 r-cran-restfulr (= 0.0.15-1),
 r-cran-rjson (= 0.2.21-1),
 r-cran-rlang (= 1.0.6-1),
 r-cran-rsqlite (= 2.2.19-1),
 r-cran-snow (= 1:0.4.4-2),
 r-cran-stringi (= 1.7.8-1+b1),
 r-cran-stringr (= 1.4.1-1),
 r-cran-sys (= 3.4.1-1),
 r-cran-tibble (= 3.1.8+dfsg-1),
 r-cran-tidyselect (= 1.2.0+dfsg-1),
 r-cran-utf8 (= 1.2.2-1),
 r-cran-vctrs (= 0.5.1-1),
 r-cran-withr (= 2.5.0-1),
 r-cran-xml (= 3.99-0.12-1),
 r-cran-xml2 (= 1.3.3-1),
 r-cran-yaml (= 2.3.6-1),
 readline-common (= 8.2-1.2),
 rpcsvc-proto (= 1.4.2-4),
 sed (= 4.8-1),
 sensible-utils (= 0.0.17),
 sgml-base (= 1.31),
 sysvinit-utils (= 3.05-6),
 tar (= 1.34+dfsg-1),
 tzdata (= 2022d-1),
 ucf (= 3.0043),
 unzip (= 6.0-27),
 util-linux (= 2.38.1-4),
 util-linux-extra (= 2.38.1-4),
 x11-common (= 1:7.7+23),
 xauth (= 1:1.1.1-1),
 xdg-utils (= 1.1.3-4.1),
 xz-utils (= 5.2.8-0.0),
 zip (= 3.0-12),
 zlib1g (= 1:1.2.11.dfsg-4.1),
 zlib1g-dev (= 1:1.2.11.dfsg-4.1)
Environment:
 DEB_BUILD_OPTIONS="parallel=4"
 LANG="en_GB.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1669099036"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-bioc-titancna-dbgsym_1.36.0-1_armhf.deb
-----------------------------------------

 new Debian package, version 2.0.
 size 15664 bytes: control archive=540 bytes.
     397 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: r-bioc-titancna-dbgsym
 Source: r-bioc-titancna
 Version: 1.36.0-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 29
 Depends: r-bioc-titancna (= 1.36.0-1)
 Section: debug
 Priority: optional
 Description: debug symbols for r-bioc-titancna
 Build-Ids: 5250cccf659b015c54a30404bdd277aeeeb27f8c

drwxr-xr-x root/root         0 2022-11-22 06:37 ./
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/lib/
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/lib/debug/
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/lib/debug/.build-id/52/
-rw-r--r-- root/root     18976 2022-11-22 06:37 ./usr/lib/debug/.build-id/52/50cccf659b015c54a30404bdd277aeeeb27f8c.debug
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/share/
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/share/doc/
lrwxrwxrwx root/root         0 2022-11-22 06:37 ./usr/share/doc/r-bioc-titancna-dbgsym -> r-bioc-titancna


r-bioc-titancna_1.36.0-1_armhf.deb
----------------------------------

 new Debian package, version 2.0.
 size 3899524 bytes: control archive=1860 bytes.
     892 bytes,    14 lines      control              
    3122 bytes,    38 lines      md5sums              
 Package: r-bioc-titancna
 Version: 1.36.0-1
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 7656
 Depends: r-base-core (>= 4.2.2.20221110-1), r-api-4.0, r-api-bioc-3.16, r-bioc-biocgenerics (>= 0.31.6), r-bioc-iranges (>= 2.6.1), r-bioc-genomicranges (>= 1.24.3), r-bioc-variantannotation (>= 1.18.7), r-cran-foreach (>= 1.4.3), r-bioc-genomeinfodb (>= 1.8.7), r-cran-data.table (>= 1.10.4), r-cran-dplyr (>= 0.5.0), libc6 (>= 2.4)
 Section: gnu-r
 Priority: optional
 Homepage: https://bioconductor.org/packages/TitanCNA/
 Description: Subclonal copy number and LOH prediction from whole genome sequencing
  Hidden Markov model to segment and predict regions of
  subclonal copy number alterations (CNA) and loss of
  heterozygosity (LOH), and estimate cellular prevalence of
  clonal clusters in tumour whole genome sequencing data.

drwxr-xr-x root/root         0 2022-11-22 06:37 ./
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/lib/
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/lib/R/
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/lib/R/site-library/
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/
-rw-r--r-- root/root      1708 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/CITATION
-rw-r--r-- root/root      1270 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/DESCRIPTION
-rw-r--r-- root/root      1995 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/INDEX
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/Meta/
-rw-r--r-- root/root      1359 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/Meta/Rd.rds
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-rw-r--r-- root/root       613 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/NAMESPACE
-rw-r--r-- root/root     16836 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/NEWS
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/R/
-rw-r--r-- root/root      1058 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/R/TitanCNA
-rw-r--r-- root/root    235852 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/R/TitanCNA.rdb
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drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/data/
-rw-r--r-- root/root   1769563 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/data/EMresults.rda
-rw-r--r-- root/root        31 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/data/datalist
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/doc/
-rw-r--r-- root/root      7691 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/doc/TitanCNA.R
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-rw-r--r-- root/root    386238 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/doc/TitanCNA.pdf
-rw-r--r-- root/root      1383 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/doc/index.html
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/extdata/
-rw-r--r-- root/root       349 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/extdata/Seqinfo_hg19.rda
-rw-r--r-- root/root   1415890 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/extdata/gc_chr2.wig
-rw-r--r-- root/root   1251617 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/extdata/map_chr2.wig
-rw-r--r-- root/root    406323 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/extdata/test_alleleCounts_chr2.txt
-rw-r--r-- root/root   1082202 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/extdata/test_norm_chr2.wig
-rw-r--r-- root/root   1015034 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/extdata/test_tum_chr2.wig
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/help/
-rw-r--r-- root/root       981 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/help/AnIndex
-rw-r--r-- root/root     84640 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/help/TitanCNA.rdb
-rw-r--r-- root/root       561 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/help/TitanCNA.rdx
-rw-r--r-- root/root       483 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/help/aliases.rds
-rw-r--r-- root/root       321 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/help/paths.rds
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/html/
-rw-r--r-- root/root      6435 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/html/00Index.html
-rw-r--r-- root/root      1735 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/html/R.css
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/libs/
-rw-r--r-- root/root     67060 2022-11-22 06:37 ./usr/lib/R/site-library/TitanCNA/libs/TitanCNA.so
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/share/
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-11-22 06:37 ./usr/share/doc/r-bioc-titancna/
-rw-r--r-- root/root       609 2022-11-22 06:37 ./usr/share/doc/r-bioc-titancna/changelog.Debian.gz
-rw-r--r-- root/root       921 2022-11-22 06:37 ./usr/share/doc/r-bioc-titancna/copyright


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build Type: any
Build-Space: 19332
Build-Time: 168
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 2080
Job: r-bioc-titancna_1.36.0-1
Machine Architecture: armhf
Package: r-bioc-titancna
Package-Time: 2306
Source-Version: 1.36.0-1
Space: 19332
Status: successful
Version: 1.36.0-1
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Finished at 2022-12-07T12:27:08Z
Build needed 00:38:26, 19332k disk space
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Build log for r-bioc-titancna (1.36.0-1) on armhf
