Raspbian Package Auto-Building

r-bioc-tfbstools → 1.30.0+dfsg-1 → armhf → 2021-10-01 06:38:55

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd

+==============================================================================+
| r-bioc-tfbstools 1.30.0+dfsg-1 (armhf)       Fri, 01 Oct 2021 05:56:28 +0000 |
+==============================================================================+

Package: r-bioc-tfbstools
Version: 1.30.0+dfsg-1
Source Version: 1.30.0+dfsg-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-4c303445-aadb-4db2-82a7-51736a4c8397' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.8 MB in 29s (881 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-bioc-tfbstools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-tfbstools.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-tfbstools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 125 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main r-bioc-tfbstools 1.30.0+dfsg-1 (dsc) [2673 B]
Get:2 http://172.17.0.1/private bookworm-staging/main r-bioc-tfbstools 1.30.0+dfsg-1 (tar) [118 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main r-bioc-tfbstools 1.30.0+dfsg-1 (diff) [3756 B]
Fetched 125 kB in 0s (433 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-tfbstools-Ka5x2B/r-bioc-tfbstools-1.30.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-tfbstools-Ka5x2B' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-8JdIsw/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-8JdIsw/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-8JdIsw/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-8JdIsw/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-8JdIsw/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-8JdIsw/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-8JdIsw/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-8JdIsw/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2907 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 22 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-8JdIsw/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (17.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biobase (>= 2.28), r-bioc-biostrings (>= 2.36.4), r-bioc-biocgenerics (>= 0.14.0), r-bioc-biocparallel (>= 1.2.21), r-bioc-bsgenome (>= 1.36.3), r-cran-catools, r-bioc-cner, r-bioc-dirichletmultinomial, r-bioc-genomeinfodb (>= 1.6.1), r-bioc-genomicranges (>= 1.20.6), r-cran-gtools (>= 3.5.0), r-bioc-iranges (>= 2.2.7), r-cran-dbi (>= 0.6), r-cran-rsqlite (>= 1.0.0), r-bioc-rtracklayer (>= 1.28.10), r-bioc-seqlogo, r-bioc-s4vectors, r-cran-tfmpvalue, r-cran-xml, r-bioc-xvector (>= 0.8.0)
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biobase (>= 2.28), r-bioc-biostrings (>= 2.36.4), r-bioc-biocgenerics (>= 0.14.0), r-bioc-biocparallel (>= 1.2.21), r-bioc-bsgenome (>= 1.36.3), r-cran-catools, r-bioc-cner, r-bioc-dirichletmultinomial, r-bioc-genomeinfodb (>= 1.6.1), r-bioc-genomicranges (>= 1.20.6), r-cran-gtools (>= 3.5.0), r-bioc-iranges (>= 2.2.7), r-cran-dbi (>= 0.6), r-cran-rsqlite (>= 1.0.0), r-bioc-rtracklayer (>= 1.28.10), r-bioc-seqlogo, r-bioc-s4vectors, r-cran-tfmpvalue, r-cran-xml, r-bioc-xvector (>= 0.8.0)
dpkg-deb: building package 'sbuild-build-depends-r-bioc-tfbstools-dummy' in '/<<BUILDDIR>>/resolver-8JdIsw/apt_archive/sbuild-build-depends-r-bioc-tfbstools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-tfbstools-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-8JdIsw/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-8JdIsw/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-8JdIsw/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-8JdIsw/apt_archive ./ Sources [709 B]
Get:5 copy:/<<BUILDDIR>>/resolver-8JdIsw/apt_archive ./ Packages [793 B]
Fetched 2835 B in 1s (3834 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install r-bioc-tfbstools build dependencies (apt-based resolver)
----------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  cpp-10 dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz
  file fontconfig fontconfig-config fonts-dejavu-core g++-10 gcc-10
  gcc-10-base gcc-11-base gettext gettext-base gfortran gfortran-10 groff-base
  icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl
  libasan6 libatomic1 libb-hooks-endofscope-perl libb-hooks-op-check-perl
  libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0
  libbz2-dev libcairo2 libcc1-0 libclass-c3-perl libclass-load-perl
  libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
  libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
  libdevel-globaldestruction-perl libdevel-overloadinfo-perl
  libdevel-stacktrace-perl libdist-checkconflicts-perl
  libdynaloader-functions-perl libelf1 libencode-locale-perl
  libeval-closure-perl libexpat1 libffi8 libfile-stripnondeterminism-perl
  libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev
  libgcc-s1 libgfortran-10-dev libgfortran5 libglib2.0-0 libgomp1
  libgraphite2-3 libgsl25 libgslcblas0 libharfbuzz0b libhttp-date-perl
  libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0
  libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
  liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0
  libmodule-implementation-perl libmodule-runtime-conflicts-perl
  libmodule-runtime-perl libmoose-perl libmro-compat-perl
  libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
  libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
  libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
  libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
  libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
  libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
  libsigsegv2 libsm6 libssh2-1 libstdc++-10-dev libstdc++6
  libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
  libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
  libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
  libtry-tiny-perl libubsan1 libuchardet0 liburi-perl libvariable-magic-perl
  libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data
  libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
  libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config
  po-debconf r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi
  r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel
  r-bioc-biostrings r-bioc-bsgenome r-bioc-cner r-bioc-delayedarray
  r-bioc-dirichletmultinomial r-bioc-genomeinfodb r-bioc-genomeinfodbdata
  r-bioc-genomicalignments r-bioc-genomicranges r-bioc-go.db r-bioc-iranges
  r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools
  r-bioc-rtracklayer r-bioc-s4vectors r-bioc-seqlogo
  r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-askpass
  r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem
  r-cran-catools r-cran-cli r-cran-clipr r-cran-colorspace r-cran-cpp11
  r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest r-cran-ellipsis
  r-cran-fansi r-cran-farver r-cran-fastmap r-cran-formatr
  r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue
  r-cran-gtable r-cran-gtools r-cran-hms r-cran-httr r-cran-isoband
  r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice
  r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix
  r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell
  r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten
  r-cran-plogr r-cran-plyr r-cran-png r-cran-powerlaw r-cran-pracma
  r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rcolorbrewer
  r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-restfulr
  r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-scales r-cran-snow
  r-cran-stringi r-cran-stringr r-cran-sys r-cran-tfmpvalue r-cran-tibble
  r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xml
  r-cran-xtable r-cran-yaml sensible-utils ucf unzip x11-common xauth
  xdg-utils zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc gcc-10-locales debtags dh-make
  postgresql-client-common gcc-10-doc gettext-doc libasprintf-dev
  libgettextpo-dev gfortran-doc gfortran-10-doc libcoarrays-dev groff
  liblapack-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev
  libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev
  libboost-contract1.74-dev libboost-coroutine1.74-dev
  libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
  libboost-filesystem1.74-dev libboost-graph1.74-dev
  libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
  libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
  libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
  libboost-program-options1.74-dev libboost-python1.74-dev
  libboost-random1.74-dev libboost-regex1.74-dev
  libboost-serialization1.74-dev libboost-stacktrace1.74-dev
  libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
  libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
  libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
  gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html icu-doc
  liblzma-doc ncurses-doc libscalar-number-perl readline-doc libstdc++-10-doc
  tcl8.6 tk8.6 libtool-doc gcj-jdk libwww-perl libcurl4-gnutls-dev m4-doc
  apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf
  r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic
  texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
  texlive-latex-recommended texlive-latex-extra texinfo r-bioc-genefilter
  r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-bioc-biocstyle r-cran-knitr
  r-bioc-all r-bioc-affy r-bioc-deseq2 r-cran-testthat r-cran-rmarkdown
  r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-bioc-shortread
  r-cran-codetools r-cran-data.table r-bioc-genomicfeatures r-cran-biocmanager
  r-bioc-gviz r-bioc-hdf5array r-bioc-delayedmatrixstats r-bioc-edger
  r-bioc-annotationhub r-bioc-dexseq r-cran-markdown r-bioc-sparsematrixstats
  r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-covr r-cran-rpart
  r-cran-callr r-cran-htmlwidgets r-cran-prettycode r-cran-processx r-cran-ps
  r-cran-rstudioapi r-cran-shiny r-cran-kernsmooth r-cran-kernlab
  r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-dplyr r-cran-jpeg
  r-cran-viridis r-cran-bench r-cran-desc r-cran-progress r-cran-rmysql
  r-cran-unitizer r-cran-forcats r-cran-lubridate r-cran-httpuv r-cran-xml2
  r-cran-magick r-cran-sf r-cran-getopt r-cran-base64enc r-cran-formattable
  r-cran-survival r-cran-units r-cran-doparallel r-cran-iterators
  r-cran-itertools r-cran-quadprog r-cran-inline r-cran-gert r-cran-gh
  r-cran-rvest r-cran-dichromat r-cran-rmpi r-cran-rsprng r-cran-rlecuyer
  r-cran-evaluate r-cran-htmltools r-cran-purrr r-cran-tidyr r-cran-zeallot
  r-cran-plm r-cran-zoo
Recommended packages:
  devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
  libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
  libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl
  libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
  libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs
  r-cran-doparallel r-cran-batchtools r-cran-rmpi r-bioc-biovizbase
  r-cran-testthat r-cran-mockery r-cran-decor r-cran-knitr r-cran-brio
  r-cran-httpuv r-cran-webutils r-cran-testit r-cran-codetools r-cran-survival
  r-cran-covr r-cran-ragg r-cran-dplyr r-cran-hexbin r-cran-hmisc
  r-cran-interp r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp
  r-cran-quantreg r-cran-rmarkdown r-cran-rpart r-cran-sf r-cran-svglite
  r-cran-vdiffr r-cran-xml2 r-cran-sp r-cran-sodium r-cran-lubridate
  r-cran-domc r-cran-abind r-cran-dbitest r-cran-htmltools r-cran-htmlwidgets
  r-cran-data.table r-cran-mockr r-cran-generics r-cran-waldo
  libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
  x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
  fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
  gfortran-10 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
  libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
  libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0
  libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
  libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
  libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
  libdevel-globaldestruction-perl libdevel-overloadinfo-perl
  libdevel-stacktrace-perl libdist-checkconflicts-perl
  libdynaloader-functions-perl libelf1 libencode-locale-perl
  libeval-closure-perl libexpat1 libffi8 libfile-stripnondeterminism-perl
  libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
  libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgsl25
  libgslcblas0 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
  libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
  libjpeg62-turbo-dev liblapack-dev liblapack3 liblwp-mediatypes-perl
  liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl
  libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
  libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
  libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
  libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
  libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
  libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3
  libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
  libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
  libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
  libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl
  libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
  libxss1 libxt6 m4 man-db openssl pkg-config po-debconf r-base-core
  r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase
  r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings
  r-bioc-bsgenome r-bioc-cner r-bioc-delayedarray r-bioc-dirichletmultinomial
  r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
  r-bioc-genomicranges r-bioc-go.db r-bioc-iranges r-bioc-keggrest
  r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer
  r-bioc-s4vectors r-bioc-seqlogo r-bioc-summarizedexperiment r-bioc-xvector
  r-bioc-zlibbioc r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64
  r-cran-bitops r-cran-blob r-cran-cachem r-cran-catools r-cran-cli
  r-cran-clipr r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-curl
  r-cran-dbi r-cran-digest r-cran-ellipsis r-cran-fansi r-cran-farver
  r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options
  r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-gtools r-cran-hms
  r-cran-httr r-cran-isoband r-cran-jsonlite r-cran-labeling r-cran-lambda.r
  r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
  r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime
  r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig
  r-cran-pkgkitten r-cran-plogr r-cran-plyr r-cran-png r-cran-powerlaw
  r-cran-pracma r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6
  r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-reshape2
  r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-scales
  r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tfmpvalue
  r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr
  r-cran-xml r-cran-xtable r-cran-yaml
  sbuild-build-depends-r-bioc-tfbstools-dummy sensible-utils ucf unzip
  x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
  cpp-10 g++-10 gcc-10 gcc-10-base gcc-11-base libasan6 libatomic1 libcc1-0
  libgcc-10-dev libgcc-s1 libgomp1 libstdc++-10-dev libstdc++6 libubsan1
14 upgraded, 281 newly installed, 0 to remove and 8 not upgraded.
Need to get 270 MB of archives.
After this operation, 679 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-8JdIsw/apt_archive ./ sbuild-build-depends-r-bioc-tfbstools-dummy 0.invalid.0 [1072 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-1 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-7+rpi1 [1944 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-7+rpi1 [797 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-7+rpi1 [88.1 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-7+rpi1 [205 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-7+rpi1 [36.2 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-7+rpi1 [37.7 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-7+rpi1 [8188 B]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-7+rpi1 [465 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf g++-10 armhf 10.3.0-11+rpi1 [7350 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf gcc-10 armhf 10.3.0-11+rpi1 [13.4 MB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf libstdc++-10-dev armhf 10.3.0-11+rpi1 [1755 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf libgcc-10-dev armhf 10.3.0-11+rpi1 [678 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf cpp-10 armhf 10.3.0-11+rpi1 [6690 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf gcc-10-base armhf 10.3.0-11+rpi1 [206 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf openssl armhf 1.1.1l-1 [815 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf unzip armhf 6.0-26 [151 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-2 [80.3 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [353 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.3-3 [27.2 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libcurl4 armhf 7.74.0-1.3 [305 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libffi8 armhf 3.4.2-2 [21.2 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.0-1 [1208 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-7+rpi1 [235 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libthai-data all 0.1.28-4.1 [171 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-1+b1 [39.7 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libthai0 armhf 0.1.28-4.1 [51.4 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.48.10+ds1-1 [184 kB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.48.10+ds1-1 [66.6 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.48.10+ds1-1 [56.8 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.11+dfsg-1 [894 kB]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.7-2 [44.1 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf libtiff5 armhf 4.2.0-1 [268 kB]
Get:102 http://172.17.0.1/private bookworm-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:103 http://172.17.0.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:104 http://172.17.0.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:105 http://172.17.0.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.11.1-1 [681 kB]
Get:106 http://172.17.0.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:107 http://172.17.0.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:108 http://172.17.0.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf r-base-core armhf 4.1.1-2 [25.3 MB]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf libgfortran-10-dev armhf 10.3.0-11+rpi1 [277 kB]
Get:111 http://172.17.0.1/private bookworm-staging/main armhf gfortran-10 armhf 10.3.0-11+rpi1 [7201 kB]
Get:112 http://172.17.0.1/private bookworm-staging/main armhf gfortran armhf 4:10.2.1-1+rpi1 [1428 B]
Get:113 http://172.17.0.1/private bookworm-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:114 http://172.17.0.1/private bookworm-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:115 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.2+20201114-4 [79.7 kB]
Get:116 http://172.17.0.1/private bookworm-staging/main armhf libncurses-dev armhf 6.2+20201114-4 [288 kB]
Get:117 http://172.17.0.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.2+20201114-4 [940 B]
Get:118 http://172.17.0.1/private bookworm-staging/main armhf libreadline-dev armhf 8.1-2 [121 kB]
Get:119 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.6-4 [240 kB]
Get:120 http://172.17.0.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.0.6-4 [67.8 kB]
Get:121 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.36-2 [197 kB]
Get:122 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.36-2 [187 kB]
Get:123 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-posix2 armhf 10.36-2 [48.7 kB]
Get:124 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.36-2 [626 kB]
Get:125 http://172.17.0.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:126 http://172.17.0.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:127 http://172.17.0.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:128 http://172.17.0.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:129 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:130 http://172.17.0.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:131 http://172.17.0.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:132 http://172.17.0.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2 [219 kB]
Get:133 http://172.17.0.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:134 http://172.17.0.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:135 http://172.17.0.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:136 http://172.17.0.1/private bookworm-staging/main armhf xauth armhf 1:1.1-1 [36.6 kB]
Get:137 http://172.17.0.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:138 http://172.17.0.1/private bookworm-staging/main armhf r-base-dev all 4.1.1-2 [4488 B]
Get:139 http://172.17.0.1/private bookworm-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:140 http://172.17.0.1/private bookworm-staging/main armhf libswitch-perl all 2.17-2.1 [20.0 kB]
Get:141 http://172.17.0.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:142 http://172.17.0.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:143 http://172.17.0.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:144 http://172.17.0.1/private bookworm-staging/main armhf libio-html-perl all 1.004-2 [16.1 kB]
Get:145 http://172.17.0.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:146 http://172.17.0.1/private bookworm-staging/main armhf liburi-perl all 5.08-1 [90.6 kB]
Get:147 http://172.17.0.1/private bookworm-staging/main armhf libhttp-message-perl all 6.33-1 [80.1 kB]
Get:148 http://172.17.0.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB]
Get:149 http://172.17.0.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:150 http://172.17.0.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:151 http://172.17.0.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:152 http://172.17.0.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:153 http://172.17.0.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:154 http://172.17.0.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:155 http://172.17.0.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:156 http://172.17.0.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:157 http://172.17.0.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get:158 http://172.17.0.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.39-1 [21.9 kB]
Get:159 http://172.17.0.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:160 http://172.17.0.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b4 [14.3 kB]
Get:161 http://172.17.0.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:162 http://172.17.0.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get:163 http://172.17.0.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:164 http://172.17.0.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:165 http://172.17.0.1/private bookworm-staging/main armhf libmro-compat-perl all 0.13-1 [12.2 kB]
Get:166 http://172.17.0.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:167 http://172.17.0.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:168 http://172.17.0.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:169 http://172.17.0.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:170 http://172.17.0.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get:171 http://172.17.0.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get:172 http://172.17.0.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB]
Get:173 http://172.17.0.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get:174 http://172.17.0.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.5 kB]
Get:175 http://172.17.0.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2014-2 [802 kB]
Get:176 http://172.17.0.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB]
Get:177 http://172.17.0.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB]
Get:178 http://172.17.0.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB]
Get:179 http://172.17.0.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:180 http://172.17.0.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.74.0-1.3 [301 kB]
Get:181 http://172.17.0.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-7+b1 [58.9 kB]
Get:182 http://172.17.0.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:183 http://172.17.0.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:184 http://172.17.0.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-9 [9534 kB]
Get:185 http://172.17.0.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b1 [4820 B]
Get:186 http://172.17.0.1/private bookworm-staging/main armhf libgslcblas0 armhf 2.6+dfsg-2 [79.5 kB]
Get:187 http://172.17.0.1/private bookworm-staging/main armhf libgsl25 armhf 2.6+dfsg-2 [753 kB]
Get:188 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.38.0-1 [648 kB]
Get:189 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biobase armhf 2.52.0-1 [2214 kB]
Get:190 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-s4vectors armhf 0.30.0-1 [2064 kB]
Get:191 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-iranges armhf 2.26.0-1 [2205 kB]
Get:192 http://172.17.0.1/private bookworm-staging/main armhf r-cran-dbi all 1.1.1-1 [619 kB]
Get:193 http://172.17.0.1/private bookworm-staging/main armhf r-cran-bit armhf 4.0.4+dfsg-1 [418 kB]
Get:194 http://172.17.0.1/private bookworm-staging/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB]
Get:195 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rlang armhf 0.4.11-1 [1186 kB]
Get:196 http://172.17.0.1/private bookworm-staging/main armhf r-cran-ellipsis armhf 0.3.2-2 [35.1 kB]
Get:197 http://172.17.0.1/private bookworm-staging/main armhf r-cran-glue armhf 1.4.2-1 [139 kB]
Get:198 http://172.17.0.1/private bookworm-staging/main armhf r-cran-vctrs armhf 0.3.8-1 [1099 kB]
Get:199 http://172.17.0.1/private bookworm-staging/main armhf r-cran-blob all 1.2.2-1 [50.0 kB]
Get:200 http://172.17.0.1/private bookworm-staging/main armhf r-cran-fastmap armhf 1.1.0-1 [63.1 kB]
Get:201 http://172.17.0.1/private bookworm-staging/main armhf r-cran-cachem armhf 1.0.6-1 [70.5 kB]
Get:202 http://172.17.0.1/private bookworm-staging/main armhf r-cran-memoise all 2.0.0-1 [52.9 kB]
Get:203 http://172.17.0.1/private bookworm-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:204 http://172.17.0.1/private bookworm-staging/main armhf r-cran-littler armhf 0.3.13-2 [94.5 kB]
Get:205 http://172.17.0.1/private bookworm-staging/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get:206 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rcpp armhf 1.0.7-2 [1997 kB]
Get:207 http://172.17.0.1/private bookworm-staging/main armhf r-cran-plogr all 0.2.0-3 [14.9 kB]
Get:208 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rsqlite armhf 2.2.8-1 [949 kB]
Get:209 http://172.17.0.1/private bookworm-staging/main armhf r-cran-curl armhf 4.3.2+dfsg-1 [153 kB]
Get:210 http://172.17.0.1/private bookworm-staging/main armhf r-cran-jsonlite armhf 1.7.2+dfsg-1 [442 kB]
Get:211 http://172.17.0.1/private bookworm-staging/main armhf r-cran-mime armhf 0.11-1 [35.5 kB]
Get:212 http://172.17.0.1/private bookworm-staging/main armhf r-cran-sys armhf 3.4-1 [42.7 kB]
Get:213 http://172.17.0.1/private bookworm-staging/main armhf r-cran-askpass armhf 1.1-2 [22.3 kB]
Get:214 http://172.17.0.1/private bookworm-staging/main armhf r-cran-openssl armhf 1.4.5+dfsg-1 [373 kB]
Get:215 http://172.17.0.1/private bookworm-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:216 http://172.17.0.1/private bookworm-staging/main armhf r-cran-httr all 1.4.2-1 [478 kB]
Get:217 http://172.17.0.1/private bookworm-staging/main armhf r-cran-png armhf 0.1-7-4 [39.9 kB]
Get:218 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-zlibbioc all 1.38.0+dfsg-1 [9008 B]
Get:219 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-xvector armhf 0.32.0-1 [609 kB]
Get:220 http://172.17.0.1/private bookworm-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:221 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rcurl armhf 1.98-1.5-1 [800 kB]
Get:222 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-genomeinfodbdata all 1.2.6-1 [11.0 MB]
Get:223 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-genomeinfodb all 1.28.4-1 [3921 kB]
Get:224 http://172.17.0.1/private bookworm-staging/main armhf r-cran-crayon all 1.4.1-1 [145 kB]
Get:225 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biostrings armhf 2.60.2-1 [14.2 MB]
Get:226 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-keggrest all 1.32.0+dfsg-1 [179 kB]
Get:227 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-annotationdbi all 1.54.1-2 [4681 kB]
Get:228 http://172.17.0.1/private bookworm-staging/main armhf r-cran-xml armhf 3.99-0.8-1 [1720 kB]
Get:229 http://172.17.0.1/private bookworm-staging/main armhf r-cran-xtable all 1:1.8-4-2 [689 kB]
Get:230 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-annotate all 1.70.0+dfsg-1 [1979 kB]
Get:231 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biocio all 1.2.0+dfsg-2 [202 kB]
Get:232 http://172.17.0.1/private bookworm-staging/main armhf r-cran-formatr all 1.11-1 [147 kB]
Get:233 http://172.17.0.1/private bookworm-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:234 http://172.17.0.1/private bookworm-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:235 http://172.17.0.1/private bookworm-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:236 http://172.17.0.1/private bookworm-staging/main armhf r-cran-snow all 1:0.4.3-2 [109 kB]
Get:237 http://172.17.0.1/private bookworm-staging/main armhf r-cran-bh all 1.74.0-2 [5524 B]
Get:238 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biocparallel armhf 1.26.2-1 [1187 kB]
Get:239 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-genomicranges armhf 1.44.0+dfsg-1 [1861 kB]
Get:240 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-rhtslib armhf 1.24.0+dfsg-1 [946 kB]
Get:241 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-rsamtools armhf 2.8.0-1 [3538 kB]
Get:242 http://172.17.0.1/private bookworm-staging/main armhf r-cran-matrixstats armhf 0.61.0-1 [451 kB]
Get:243 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-matrixgenerics all 1.4.3-1 [301 kB]
Get:244 http://172.17.0.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-41-1+b1 [1167 kB]
Get:245 http://172.17.0.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.3-4-2 [3573 kB]
Get:246 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-delayedarray armhf 0.18.0+dfsg-2 [1987 kB]
Get:247 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-summarizedexperiment all 1.22.0+dfsg-1 [1982 kB]
Get:248 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-genomicalignments armhf 1.28.0-1 [2198 kB]
Get:249 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rjson armhf 0.2.20-2 [125 kB]
Get:250 http://172.17.0.1/private bookworm-staging/main armhf r-cran-yaml armhf 2.2.1-1+b1 [92.2 kB]
Get:251 http://172.17.0.1/private bookworm-staging/main armhf r-cran-restfulr armhf 0.0.13-2 [346 kB]
Get:252 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-rtracklayer armhf 1.52.1-1 [5111 kB]
Get:253 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-bsgenome all 1.60.0-1 [7184 kB]
Get:254 http://172.17.0.1/private bookworm-staging/main armhf r-cran-cli armhf 3.0.1-1 [735 kB]
Get:255 http://172.17.0.1/private bookworm-staging/main armhf r-cran-clipr all 0.7.1-1 [50.7 kB]
Get:256 http://172.17.0.1/private bookworm-staging/main armhf r-cran-lifecycle all 1.0.0-1 [91.2 kB]
Get:257 http://172.17.0.1/private bookworm-staging/main armhf r-cran-hms all 1.1.0-1 [103 kB]
Get:258 http://172.17.0.1/private bookworm-staging/main armhf r-cran-fansi armhf 0.5.0-1 [379 kB]
Get:259 http://172.17.0.1/private bookworm-staging/main armhf r-cran-magrittr armhf 2.0.1-1 [197 kB]
Get:260 http://172.17.0.1/private bookworm-staging/main armhf r-cran-utf8 armhf 1.2.2-1 [129 kB]
Get:261 http://172.17.0.1/private bookworm-staging/main armhf r-cran-pillar all 1.6.2+dfsg-1 [410 kB]
Get:262 http://172.17.0.1/private bookworm-staging/main armhf r-cran-tibble armhf 3.0.6+dfsg-1 [417 kB]
Get:263 http://172.17.0.1/private bookworm-staging/main armhf r-cran-cpp11 all 0.3.1-2 [150 kB]
Get:264 http://172.17.0.1/private bookworm-staging/main armhf r-cran-readr armhf 1.4.0-1 [721 kB]
Get:265 http://172.17.0.1/private bookworm-staging/main armhf r-cran-plyr armhf 1.8.6-2 [830 kB]
Get:266 http://172.17.0.1/private bookworm-staging/main armhf r-cran-stringi armhf 1.7.4-1 [773 kB]
Get:267 http://172.17.0.1/private bookworm-staging/main armhf r-cran-stringr all 1.4.0-2 [199 kB]
Get:268 http://172.17.0.1/private bookworm-staging/main armhf r-cran-reshape2 armhf 1.4.4-2 [110 kB]
Get:269 http://172.17.0.1/private bookworm-staging/main armhf r-cran-digest armhf 0.6.28-1 [187 kB]
Get:270 http://172.17.0.1/private bookworm-staging/main armhf r-cran-gtable all 0.3.0+dfsg-2 [163 kB]
Get:271 http://172.17.0.1/private bookworm-staging/main armhf r-cran-isoband armhf 0.2.5-1 [1756 kB]
Get:272 http://172.17.0.1/private bookworm-staging/main armhf r-cran-mass armhf 7.3-54-2 [1117 kB]
Get:273 http://172.17.0.1/private bookworm-staging/main armhf r-cran-nlme armhf 3.1.153-1 [2266 kB]
Get:274 http://172.17.0.1/private bookworm-staging/main armhf r-cran-mgcv armhf 1.8-37-1 [2980 kB]
Get:275 http://172.17.0.1/private bookworm-staging/main armhf r-cran-farver armhf 2.1.0-1 [1394 kB]
Get:276 http://172.17.0.1/private bookworm-staging/main armhf r-cran-labeling all 0.4.2-1 [62.7 kB]
Get:277 http://172.17.0.1/private bookworm-staging/main armhf r-cran-colorspace armhf 2.0-2+dfsg-1 [1690 kB]
Get:278 http://172.17.0.1/private bookworm-staging/main armhf r-cran-munsell all 0.5.0-2 [236 kB]
Get:279 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rcolorbrewer all 1.1-2-3 [54.4 kB]
Get:280 http://172.17.0.1/private bookworm-staging/main armhf r-cran-viridislite all 0.4.0-2 [1298 kB]
Get:281 http://172.17.0.1/private bookworm-staging/main armhf r-cran-scales all 1.1.1-1 [557 kB]
Get:282 http://172.17.0.1/private bookworm-staging/main armhf r-cran-withr all 2.4.2-1 [213 kB]
Get:283 http://172.17.0.1/private bookworm-staging/main armhf r-cran-ggplot2 all 3.3.5+dfsg-2 [3215 kB]
Get:284 http://172.17.0.1/private bookworm-staging/main armhf r-cran-pracma all 2.3.3-1 [1695 kB]
Get:285 http://172.17.0.1/private bookworm-staging/main armhf r-cran-powerlaw all 0.70.6-2 [3367 kB]
Get:286 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-go.db all 3.13.0-1 [12.7 MB]
Get:287 http://172.17.0.1/private bookworm-staging/main armhf r-cran-r.methodss3 all 1.8.1-1 [83.1 kB]
Get:288 http://172.17.0.1/private bookworm-staging/main armhf r-cran-r.oo all 1.24.0-1 [955 kB]
Get:289 http://172.17.0.1/private bookworm-staging/main armhf r-cran-r.utils all 2.10.1-1 [1385 kB]
Get:290 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-cner armhf 1.28.0+dfsg-1 [8371 kB]
Get:291 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-dirichletmultinomial armhf 1.34.0-1 [644 kB]
Get:292 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-seqlogo all 1.58.0+dfsg-1 [155 kB]
Get:293 http://172.17.0.1/private bookworm-staging/main armhf r-cran-catools armhf 1.18.2-1 [200 kB]
Get:294 http://172.17.0.1/private bookworm-staging/main armhf r-cran-gtools armhf 3.9.2-2 [360 kB]
Get:295 http://172.17.0.1/private bookworm-staging/main armhf r-cran-tfmpvalue armhf 0.0.8-2 [50.2 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libexpat1:armhf (2.4.1-2) ...
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Setting up r-cran-colorspace (2.0-2+dfsg-1) ...
Setting up r-cran-stringi (1.7.4-1) ...
Setting up r-cran-cpp11 (0.3.1-2) ...
Setting up r-cran-plyr (1.8.6-2) ...
Setting up r-cran-rcolorbrewer (1.1-2-3) ...
Setting up r-bioc-s4vectors (0.30.0-1) ...
Setting up r-cran-isoband (0.2.5-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up r-cran-matrix (1.3-4-2) ...
Setting up r-cran-mgcv (1.8-37-1) ...
Setting up r-cran-powerlaw (0.70.6-2) ...
Setting up r-cran-cachem (1.0.6-1) ...
Setting up r-cran-tfmpvalue (0.0.8-2) ...
Setting up r-cran-catools (1.18.2-1) ...
Setting up r-bioc-iranges (2.26.0-1) ...
Setting up dh-r (20210816) ...
Setting up r-cran-rjson (0.2.20-2) ...
Setting up r-cran-rcurl (1.98-1.5-1) ...
Setting up r-bioc-seqlogo (1.58.0+dfsg-1) ...
Setting up r-cran-restfulr (0.0.13-2) ...
Setting up r-bioc-delayedarray (0.18.0+dfsg-2) ...
Setting up r-cran-ellipsis (0.3.2-2) ...
Setting up r-cran-openssl (1.4.5+dfsg-1) ...
Setting up r-cran-stringr (1.4.0-2) ...
Setting up r-bioc-biocparallel (1.26.2-1) ...
Setting up r-bioc-rhtslib (1.24.0+dfsg-1) ...
Setting up r-cran-munsell (0.5.0-2) ...
Setting up r-bioc-dirichletmultinomial (1.34.0-1) ...
Setting up r-bioc-biocio (1.2.0+dfsg-2) ...
Setting up r-cran-r.oo (1.24.0-1) ...
Setting up r-cran-reshape2 (1.4.4-2) ...
Setting up r-bioc-genomeinfodb (1.28.4-1) ...
Setting up r-cran-httr (1.4.2-1) ...
Setting up r-cran-scales (1.1.1-1) ...
Setting up r-cran-memoise (2.0.0-1) ...
Setting up r-bioc-xvector (0.32.0-1) ...
Setting up r-cran-vctrs (0.3.8-1) ...
Setting up r-cran-pillar (1.6.2+dfsg-1) ...
Setting up r-cran-r.utils (2.10.1-1) ...
Setting up r-bioc-genomicranges (1.44.0+dfsg-1) ...
Setting up r-bioc-biostrings (2.60.2-1) ...
Setting up r-cran-tibble (3.0.6+dfsg-1) ...
Setting up r-cran-hms (1.1.0-1) ...
Setting up r-cran-blob (1.2.2-1) ...
Setting up r-bioc-rsamtools (2.8.0-1) ...
Setting up r-cran-rsqlite (2.2.8-1) ...
Setting up r-bioc-summarizedexperiment (1.22.0+dfsg-1) ...
Setting up r-bioc-keggrest (1.32.0+dfsg-1) ...
Setting up r-cran-ggplot2 (3.3.5+dfsg-2) ...
Setting up r-bioc-annotationdbi (1.54.1-2) ...
Setting up r-bioc-go.db (3.13.0-1) ...
Setting up r-bioc-annotate (1.70.0+dfsg-1) ...
Setting up r-cran-readr (1.4.0-1) ...
Setting up r-bioc-genomicalignments (1.28.0-1) ...
Setting up r-bioc-rtracklayer (1.52.1-1) ...
Setting up r-bioc-cner (1.28.0+dfsg-1) ...
Setting up r-bioc-bsgenome (1.60.0-1) ...
Setting up sbuild-build-depends-r-bioc-tfbstools-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-11+rpi1 gcc-10_10.3.0-11+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-7+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-1 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-11+rpi1 dash_0.5.11+git20210120+802ebd4-1 dctrl-tools_2.24-3 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-11+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-11+rpi1 gcc-10-base_10.3.0-11+rpi1 gcc-11-base_11.2.0-7+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 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r-bioc-seqlogo_1.58.0+dfsg-1 r-bioc-summarizedexperiment_1.22.0+dfsg-1 r-bioc-xvector_0.32.0-1 r-bioc-zlibbioc_1.38.0+dfsg-1 r-cran-askpass_1.1-2 r-cran-bh_1.74.0-2 r-cran-bit_4.0.4+dfsg-1 r-cran-bit64_4.0.5-1 r-cran-bitops_1.0-7-1 r-cran-blob_1.2.2-1 r-cran-cachem_1.0.6-1 r-cran-catools_1.18.2-1 r-cran-cli_3.0.1-1 r-cran-clipr_0.7.1-1 r-cran-colorspace_2.0-2+dfsg-1 r-cran-cpp11_0.3.1-2 r-cran-crayon_1.4.1-1 r-cran-curl_4.3.2+dfsg-1 r-cran-dbi_1.1.1-1 r-cran-digest_0.6.28-1 r-cran-ellipsis_0.3.2-2 r-cran-fansi_0.5.0-1 r-cran-farver_2.1.0-1 r-cran-fastmap_1.1.0-1 r-cran-formatr_1.11-1 r-cran-futile.logger_1.4.3-4 r-cran-futile.options_1.0.1-3 r-cran-ggplot2_3.3.5+dfsg-2 r-cran-glue_1.4.2-1 r-cran-gtable_0.3.0+dfsg-2 r-cran-gtools_3.9.2-2 r-cran-hms_1.1.0-1 r-cran-httr_1.4.2-1 r-cran-isoband_0.2.5-1 r-cran-jsonlite_1.7.2+dfsg-1 r-cran-labeling_0.4.2-1 r-cran-lambda.r_1.2.4-2 r-cran-lattice_0.20-41-1+b1 r-cran-lifecycle_1.0.0-1 r-cran-littler_0.3.13-2 r-cran-magrittr_2.0.1-1 r-cran-mass_7.3-54-2 r-cran-matrix_1.3-4-2 r-cran-matrixstats_0.61.0-1 r-cran-memoise_2.0.0-1 r-cran-mgcv_1.8-37-1 r-cran-mime_0.11-1 r-cran-munsell_0.5.0-2 r-cran-nlme_3.1.153-1 r-cran-openssl_1.4.5+dfsg-1 r-cran-pillar_1.6.2+dfsg-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.2-2 r-cran-plogr_0.2.0-3 r-cran-plyr_1.8.6-2 r-cran-png_0.1-7-4 r-cran-powerlaw_0.70.6-2 r-cran-pracma_2.3.3-1 r-cran-r.methodss3_1.8.1-1 r-cran-r.oo_1.24.0-1 r-cran-r.utils_2.10.1-1 r-cran-r6_2.5.1-1 r-cran-rcolorbrewer_1.1-2-3 r-cran-rcpp_1.0.7-2 r-cran-rcurl_1.98-1.5-1 r-cran-readr_1.4.0-1 r-cran-reshape2_1.4.4-2 r-cran-restfulr_0.0.13-2 r-cran-rjson_0.2.20-2 r-cran-rlang_0.4.11-1 r-cran-rsqlite_2.2.8-1 r-cran-scales_1.1.1-1 r-cran-snow_1:0.4.3-2 r-cran-stringi_1.7.4-1 r-cran-stringr_1.4.0-2 r-cran-sys_3.4-1 r-cran-tfmpvalue_0.0.8-2 r-cran-tibble_3.0.6+dfsg-1 r-cran-utf8_1.2.2-1 r-cran-vctrs_0.3.8-1 r-cran-viridislite_0.4.0-2 r-cran-withr_2.4.2-1 r-cran-xml_3.99-0.8-1 r-cran-xtable_1:1.8-4-2 r-cran-yaml_2.2.1-1+b1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-tfbstools-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021a-1 ucf_3.0043 unzip_6.0-26 util-linux_2.37.2-1 x11-common_1:7.7+23 xauth_1:1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2 zip_3.0-12 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.BKxnDuRx/trustedkeys.kbx': General error
gpgv: Signature made Sun Sep 12 13:33:04 2021 UTC
gpgv:                using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv:                issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-tfbstools_1.30.0+dfsg-1.dsc
dpkg-source: info: extracting r-bioc-tfbstools in /<<BUILDDIR>>/r-bioc-tfbstools-1.30.0+dfsg
dpkg-source: info: unpacking r-bioc-tfbstools_1.30.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-tfbstools_1.30.0+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Fix_autopkgtest.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-4c303445-aadb-4db2-82a7-51736a4c8397
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package r-bioc-tfbstools
dpkg-buildpackage: info: source version 1.30.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules binary-arch
dh binary-arch --buildsystem R
   dh_update_autotools_config -a -O--buildsystem=R
   dh_autoreconf -a -O--buildsystem=R
   dh_auto_configure -a -O--buildsystem=R
   dh_auto_build -a -O--buildsystem=R
   dh_auto_test -a -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=R
   dh_prep -a -O--buildsystem=R
   dh_auto_install --destdir=debian/r-bioc-tfbstools/ -a -O--buildsystem=R
I: R packages needed for DEP8: testthat
I: R Package: TFBSTools Version: 1.30.0
I: Building using R version 4.1.1-2
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Sun, 12 Sep 2021 18:58:04 +0530
	mkdir -p /<<BUILDDIR>>/r-bioc-tfbstools-1.30.0\+dfsg/debian/r-bioc-tfbstools/usr/lib/R/site-library
	R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-tfbstools-1.30.0\+dfsg/debian/r-bioc-tfbstools/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 12 Sep 2021 18:58:04 +0530'"
* installing *source* package 'TFBSTools' ...
** using staged installation
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-tfbstools-1.30.0+dfsg/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c matrixAlignerDynamic.c -o matrixAlignerDynamic.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c R_init_TFBSTools.c -o R_init_TFBSTools.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o TFBSTools.so matrixAlignerDynamic.o R_init_TFBSTools.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-tfbstools-1.30.0+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-tfbstools-1.30.0+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-tfbstools-1.30.0+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-tfbstools-1.30.0+dfsg/debian/r-bioc-tfbstools/usr/lib/R/site-library/00LOCK-r-bioc-tfbstools-1.30.0+dfsg/00new/TFBSTools/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'seqLogo' in package 'TFBSTools'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TFBSTools)
W: Ignoring specified R dependency: R (>= 3.2.2)
I: Using r-cran-testthat for Recommends:testthat
I: Using r-bioc-biocstyle for Suggests:BiocStyle (>= 1.7.7)
W: Cannot find a debian package for Suggests:JASPAR2014 (>= 1.4.0)
I: Using r-cran-knitr for Suggests:knitr (>= 1.11)
W: Cannot find a debian package for Suggests:JASPAR2016 (>= 1.0.0)
W: Cannot find a debian package for Suggests:JASPAR2018 (>= 1.0.0)
I: Using r-bioc-biobase for Imports:Biobase (>= 2.28)
I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.36.4)
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.14.0)
I: Using r-bioc-biocparallel for Imports:BiocParallel (>= 1.2.21)
I: Using r-bioc-bsgenome for Imports:BSgenome (>= 1.36.3)
I: Using r-cran-catools for Imports:caTools (>= 1.17.1)
I: Using r-bioc-cner for Imports:CNEr (>= 1.4.0)
I: Using r-bioc-dirichletmultinomial for Imports:DirichletMultinomial (>= 1.10.0)
I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.6.1)
I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.20.6)
I: Using r-cran-gtools for Imports:gtools (>= 3.5.0)
I: Using r-bioc-iranges for Imports:IRanges (>= 2.2.7)
I: Using r-cran-dbi for Imports:DBI (>= 0.6)
I: Using r-cran-rsqlite for Imports:RSQLite (>= 1.0.0)
I: Using r-bioc-rtracklayer for Imports:rtracklayer (>= 1.28.10)
I: Using r-bioc-seqlogo for Imports:seqLogo (>= 1.34.0)
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.9.25)
I: Using r-cran-tfmpvalue for Imports:TFMPvalue (>= 0.0.5)
I: Using r-cran-xml for Imports:XML (>= 3.98-1.3)
I: Using r-bioc-xvector for Imports:XVector (>= 0.8.0)
I: BioConductor API version: r-api-bioc-3.13
I: Use r-bioc-tfbstools as Debian binary package for variables substitution
   dh_installdocs -a -O--buildsystem=R
   dh_installchangelogs -a -O--buildsystem=R
   dh_installsystemduser -a -O--buildsystem=R
   dh_perl -a -O--buildsystem=R
   dh_link -a -O--buildsystem=R
   dh_strip_nondeterminism -a -O--buildsystem=R
   dh_compress -a -O--buildsystem=R
   dh_fixperms -a -O--buildsystem=R
   dh_missing -a -O--buildsystem=R
   dh_dwz -a -O--buildsystem=R
   dh_strip -a -O--buildsystem=R
   dh_makeshlibs -a -O--buildsystem=R
   dh_shlibdeps -a -O--buildsystem=R
   dh_installdeb -a -O--buildsystem=R
   dh_gencontrol -a -O--buildsystem=R
   dh_md5sums -a -O--buildsystem=R
   dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-tfbstools' in '../r-bioc-tfbstools_1.30.0+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-tfbstools-dbgsym' in '../r-bioc-tfbstools-dbgsym_1.30.0+dfsg-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-bioc-tfbstools_1.30.0+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-10-01T06:38:44Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-bioc-tfbstools_1.30.0+dfsg-1_armhf.changes:
---------------------------------------------

Format: 1.8
Date: Sun, 12 Sep 2021 18:58:04 +0530
Source: r-bioc-tfbstools
Binary: r-bioc-tfbstools r-bioc-tfbstools-dbgsym
Architecture: armhf
Version: 1.30.0+dfsg-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
 r-bioc-tfbstools - GNU R Transcription Factor Binding Site (TFBS) Analysis
Changes:
 r-bioc-tfbstools (1.30.0+dfsg-1) unstable; urgency=medium
 .
   * Team Upload.
   [ Andreas Tille ]
   * New upstream version
   * Standards-Version: 4.6.0 (routine-update)
   * dh-update-R to update Build-Depends (3) (routine-update)
   * Remove constraints unnecessary since buster:
     + Build-Depends: Drop versioned constraint on r-bioc-biobase,
       r-bioc-biocgenerics, r-bioc-biocparallel, r-bioc-biostrings,
       r-bioc-bsgenome, r-bioc-genomeinfodb, r-bioc-genomicranges,
       r-bioc-iranges, r-bioc-rtracklayer, r-bioc-xvector and r-cran-rsqlite.
 .
   [ Nilesh Patra ]
   * d/control: Versioned B-D as per DESCRIPTION file
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Files:
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+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-bioc-tfbstools-dbgsym_1.30.0+dfsg-1_armhf.deb
-----------------------------------------------

 new Debian package, version 2.0.
 size 8064 bytes: control archive=544 bytes.
     411 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: r-bioc-tfbstools-dbgsym
 Source: r-bioc-tfbstools
 Version: 1.30.0+dfsg-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 20
 Depends: r-bioc-tfbstools (= 1.30.0+dfsg-1)
 Section: debug
 Priority: optional
 Description: debug symbols for r-bioc-tfbstools
 Build-Ids: e5d6a2fe6627dea66f757dd84f7de48b556e8600

drwxr-xr-x root/root         0 2021-09-12 13:28 ./
drwxr-xr-x root/root         0 2021-09-12 13:28 ./usr/
drwxr-xr-x root/root         0 2021-09-12 13:28 ./usr/lib/
drwxr-xr-x root/root         0 2021-09-12 13:28 ./usr/lib/debug/
drwxr-xr-x root/root         0 2021-09-12 13:28 ./usr/lib/debug/.build-id/
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-rw-r--r-- root/root     10116 2021-09-12 13:28 ./usr/lib/debug/.build-id/e5/d6a2fe6627dea66f757dd84f7de48b556e8600.debug
drwxr-xr-x root/root         0 2021-09-12 13:28 ./usr/share/
drwxr-xr-x root/root         0 2021-09-12 13:28 ./usr/share/doc/
lrwxrwxrwx root/root         0 2021-09-12 13:28 ./usr/share/doc/r-bioc-tfbstools-dbgsym -> r-bioc-tfbstools


r-bioc-tfbstools_1.30.0+dfsg-1_armhf.deb
----------------------------------------

 new Debian package, version 2.0.
 size 1105140 bytes: control archive=2540 bytes.
    1460 bytes,    18 lines      control              
    4535 bytes,    53 lines      md5sums              
 Package: r-bioc-tfbstools
 Version: 1.30.0+dfsg-1
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 1966
 Depends: r-base-core (>= 4.1.1-2), r-api-4.0, r-api-bioc-3.13, r-bioc-biobase (>= 2.28), r-bioc-biostrings (>= 2.36.4), r-bioc-biocgenerics (>= 0.14.0), r-bioc-biocparallel (>= 1.2.21), r-bioc-bsgenome (>= 1.36.3), r-cran-catools (>= 1.17.1), r-bioc-cner (>= 1.4.0), r-bioc-dirichletmultinomial (>= 1.10.0), r-bioc-genomeinfodb (>= 1.6.1), r-bioc-genomicranges (>= 1.20.6), r-cran-gtools (>= 3.5.0), r-bioc-iranges (>= 2.2.7), r-cran-dbi (>= 0.6), r-cran-rsqlite (>= 1.0.0), r-bioc-rtracklayer (>= 1.28.10), r-bioc-seqlogo (>= 1.34.0), r-bioc-s4vectors (>= 0.9.25), r-cran-tfmpvalue (>= 0.0.5), r-cran-xml (>= 3.98-1.3), r-bioc-xvector (>= 0.8.0), libc6 (>= 2.4)
 Recommends: r-cran-testthat
 Suggests: r-bioc-biocstyle (>= 1.7.7), r-cran-knitr (>= 1.11)
 Section: gnu-r
 Priority: optional
 Homepage: https://bioconductor.org/packages/TFBSTools/
 Description: GNU R Transcription Factor Binding Site (TFBS) Analysis
  TFBSTools is a package for the analysis and manipulation of
  transcription factor binding sites. It includes matrices conversion
  between Position Frequency Matirx (PFM), Position Weight Matirx (PWM)
  and Information Content Matrix (ICM). It can also scan putative TFBS
  from sequence/alignment, query JASPAR database and provides a wrapper of
  de novo motif discovery software.

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-rw-r--r-- root/root      2387 2021-09-12 13:28 ./usr/lib/R/site-library/TFBSTools/DESCRIPTION
-rw-r--r-- root/root      1897 2021-09-12 13:28 ./usr/lib/R/site-library/TFBSTools/INDEX
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-rw-r--r-- root/root      1669 2021-09-12 13:28 ./usr/lib/R/site-library/TFBSTools/NEWS
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-rw-r--r-- root/root       873 2021-09-12 13:28 ./usr/share/doc/r-bioc-tfbstools/changelog.Debian.gz
-rw-r--r-- root/root       949 2021-09-12 13:27 ./usr/share/doc/r-bioc-tfbstools/copyright
-rw-r--r-- root/root       407 2021-09-12 13:27 ./usr/share/doc/r-bioc-tfbstools/run-unit-test
drwxr-xr-x root/root         0 2021-05-19 19:01 ./usr/share/doc/r-bioc-tfbstools/tests/
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drwxr-xr-x root/root         0 2021-09-12 13:28 ./usr/share/doc/r-bioc-tfbstools/tests/testthat/
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-rw-r--r-- root/root      1080 2021-05-19 19:01 ./usr/share/doc/r-bioc-tfbstools/tests/testthat/test_searchSeq.R


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 4128
Build-Time: 525
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1954
Job: r-bioc-tfbstools_1.30.0+dfsg-1
Machine Architecture: armhf
Package: r-bioc-tfbstools
Package-Time: 2536
Source-Version: 1.30.0+dfsg-1
Space: 4128
Status: successful
Version: 1.30.0+dfsg-1
--------------------------------------------------------------------------------
Finished at 2021-10-01T06:38:44Z
Build needed 00:42:16, 4128k disc space

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