r-bioc-sva →
3.48.0-1 →
armhf → 2023-09-30 03:01:56
sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023
+==============================================================================+
| r-bioc-sva 3.48.0-1 (armhf) Sat, 30 Sep 2023 02:59:34 +0000 |
+==============================================================================+
Package: r-bioc-sva
Version: 3.48.0-1
Source Version: 3.48.0-1
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-ef743269-bb95-4913-bf14-c2ea4a8b3184' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-sva-axfjSg/resolver-oEp4Mu' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.1 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.7 MB]
Fetched 28.8 MB in 5s (5516 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-sva' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-sva.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-sva.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 461 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-bioc-sva 3.48.0-1 (dsc) [2113 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-bioc-sva 3.48.0-1 (tar) [453 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-bioc-sva 3.48.0-1 (diff) [5964 B]
Fetched 461 kB in 0s (3741 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-sva-axfjSg/r-bioc-sva-3.48.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-sva-axfjSg' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-mgcv, r-bioc-genefilter, r-bioc-biocparallel, r-cran-matrixstats, r-bioc-limma, r-bioc-edger, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-mgcv, r-bioc-genefilter, r-bioc-biocparallel, r-cran-matrixstats, r-bioc-limma, r-bioc-edger, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [736 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [768 B]
Fetched 2113 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-12 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libboost1.81-dev libbrotli1
libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db openssl pkg-config pkgconf pkgconf-bin
po-debconf r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi
r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings
r-bioc-edger r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics
r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bh
r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli
r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi
r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options
r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lambda.r r-cran-lattice
r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-matrix
r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-nlme
r-cran-openssl r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png
r-cran-r6 r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-snow
r-cran-survival r-cran-sys r-cran-vctrs r-cran-xml r-cran-xtable
sensible-utils ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-12-doc libcoarrays-dev groff liblapack-doc
libboost1.81-doc libboost-atomic1.81-dev libboost-chrono1.81-dev
libboost-container1.81-dev libboost-context1.81-dev
libboost-contract1.81-dev libboost-coroutine1.81-dev
libboost-date-time1.81-dev libboost-exception1.81-dev libboost-fiber1.81-dev
libboost-filesystem1.81-dev libboost-graph1.81-dev
libboost-graph-parallel1.81-dev libboost-iostreams1.81-dev
libboost-locale1.81-dev libboost-log1.81-dev libboost-math1.81-dev
libboost-mpi1.81-dev libboost-mpi-python1.81-dev libboost-numpy1.81-dev
libboost-program-options1.81-dev libboost-python1.81-dev
libboost-random1.81-dev libboost-regex1.81-dev
libboost-serialization1.81-dev libboost-stacktrace1.81-dev
libboost-system1.81-dev libboost-test1.81-dev libboost-thread1.81-dev
libboost-timer1.81-dev libboost-type-erasure1.81-dev libboost-wave1.81-dev
libboost1.81-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.81-dev
low-memory-monitor icu-doc liblzma-doc ncurses-doc libscalar-number-perl
readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl
libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less
www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib
r-base-html texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-go.db
r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-bioc-biocstyle r-cran-knitr
r-bioc-all r-bioc-genomicranges r-bioc-delayedarray r-bioc-rsamtools
r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-cran-doparallel
r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread
r-cran-batchtools r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures
r-cran-readr r-bioc-rhdf5 r-cran-statmod r-bioc-summarizedexperiment
r-cran-seuratobject r-cran-rcolorbrewer r-cran-markdown r-cran-biasedurn
r-cran-ellipse r-cran-gplots r-cran-mass r-bioc-sparsematrixstats
r-bioc-delayedmatrixstats r-cran-testthat r-cran-roxygen2 r-cran-rmarkdown
r-cran-ff r-cran-covr r-cran-pillar r-cran-callr r-cran-digest
r-cran-htmltools r-cran-htmlwidgets r-cran-processx r-cran-ps
r-cran-rprojroot r-cran-rstudioapi r-cran-tibble r-cran-whoami r-cran-rmysql
r-cran-shiny r-cran-dplyr r-cran-forcats r-cran-ggplot2 r-cran-magrittr
r-cran-r.utils r-cran-stringr r-cran-waldo r-cran-withr r-cran-lintr
r-cran-tidyverse r-cran-getopt r-cran-interp r-cran-gam r-cran-base64enc
r-cran-r.devices r-cran-r.rsp r-cran-inline r-cran-fs r-cran-usethis
r-cran-gert r-cran-gh r-cran-hms r-cran-rvest r-cran-xml2 r-cran-rmpi
r-cran-rlecuyer r-cran-spelling r-cran-pkgdown r-cran-zeallot r-cran-plm
r-cran-zoo
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libio-compress-brotli-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-class r-cran-knitr
r-cran-testthat r-cran-withr r-cran-mockery r-cran-bench r-cran-brio
r-cran-callr r-cran-covr r-cran-decor r-cran-desc r-cran-ggplot2
r-cran-lobstr r-cran-progress r-cran-rmarkdown r-cran-scales r-cran-tibble
r-cran-spelling r-cran-magrittr r-cran-httpuv r-cran-webutils r-cran-testit
r-cran-jpeg r-cran-readr r-cran-xml2 r-cran-r.rsp r-cran-sf r-cran-runit
r-cran-digest r-cran-sodium r-cran-dbitest r-cran-generics r-cran-dplyr
r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-12 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libboost1.81-dev libbrotli1
libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db openssl pkg-config pkgconf pkgconf-bin
po-debconf r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi
r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings
r-bioc-edger r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics
r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bh
r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli
r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi
r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options
r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lambda.r r-cran-lattice
r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-matrix
r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-nlme
r-cran-openssl r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png
r-cran-r6 r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-snow
r-cran-survival r-cran-sys r-cran-vctrs r-cran-xml r-cran-xtable
sbuild-build-depends-main-dummy sensible-utils ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
0 upgraded, 234 newly installed, 0 to remove and 4 not upgraded.
Need to get 183 MB of archives.
After this operation, 550 MB of additional disk space will be used.
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Get:36 http://172.17.4.1/private trixie-staging/main armhf zip armhf 3.0-13 [207 kB]
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Get:47 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.6-1 [323 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.6-1 [726 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.56.0-1 [60.5 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-2 [195 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 7.88.1-10+rpi1 [343 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.0-2+rpi1 [1249 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 12.2.0-14+rpi1 [238 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-2 [187 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-2 [40.4 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-2 [30.0 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-3 [133 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-1 [298 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.1-4 [26.3 MB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libgfortran-12-dev armhf 12.2.0-14+rpi1 [285 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf gfortran-12 armhf 12.2.0-14+rpi1 [7509 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:12.2.0-3+rpi1 [1424 B]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20230625-2 [79.6 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20230625-2 [290 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-1.3 [123 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.40-1 [336 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.4-0.1 [269 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-3 [175 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-3 [9959 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.1-4 [4512 B]
Get:123 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.44-2 [81.8 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:147 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:148 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2206-1 [795 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1 [12.0 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 7.88.1-10+rpi1 [337 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10 [55.8 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20230912 [40.8 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf libboost1.81-dev armhf 1.81.0-6 [10.4 MB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf r-cran-littler armhf 0.3.18-2 [86.0 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf littler all 0.3.18-2 [14.8 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocgenerics all 0.46.0-1 [594 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biobase armhf 2.60.0-1 [2126 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf r-bioc-s4vectors armhf 0.38.1+dfsg-1 [2067 kB]
Get:175 http://172.17.4.1/private trixie-staging/main armhf r-bioc-iranges armhf 2.34.1-1 [2247 kB]
Get:176 http://172.17.4.1/private trixie-staging/main armhf r-cran-dbi all 1.1.3-1 [687 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf r-cran-bit armhf 4.0.5-1 [1066 kB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB]
Get:179 http://172.17.4.1/private trixie-staging/main armhf r-cran-rlang armhf 1.1.1-1 [1653 kB]
Get:180 http://172.17.4.1/private trixie-staging/main armhf r-cran-cli armhf 3.6.1-1 [1307 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf r-cran-vctrs armhf 0.6.3-1 [1343 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf r-cran-blob all 1.2.4-1 [49.6 kB]
Get:185 http://172.17.4.1/private trixie-staging/main armhf r-cran-fastmap armhf 1.1.1-1 [67.1 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf r-cran-cachem armhf 1.0.8-1 [71.8 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf r-cran-memoise all 2.0.1-1 [53.8 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf r-cran-plogr all 0.2.0-3 [14.9 kB]
Get:190 http://172.17.4.1/private trixie-staging/main armhf r-cran-cpp11 all 0.4.6-1 [219 kB]
Get:191 http://172.17.4.1/private trixie-staging/main armhf r-cran-rsqlite armhf 2.3.1-1 [995 kB]
Get:192 http://172.17.4.1/private trixie-staging/main armhf r-cran-curl armhf 5.0.2+dfsg-1 [172 kB]
Get:193 http://172.17.4.1/private trixie-staging/main armhf r-cran-jsonlite armhf 1.8.7+dfsg-1 [439 kB]
Get:194 http://172.17.4.1/private trixie-staging/main armhf r-cran-mime armhf 0.12-1 [35.6 kB]
Get:195 http://172.17.4.1/private trixie-staging/main armhf r-cran-sys armhf 3.4.2-1 [42.8 kB]
Get:196 http://172.17.4.1/private trixie-staging/main armhf r-cran-askpass armhf 1.2.0-1 [23.8 kB]
Get:197 http://172.17.4.1/private trixie-staging/main armhf r-cran-openssl armhf 2.1.0+dfsg-1 [394 kB]
Get:198 http://172.17.4.1/private trixie-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:199 http://172.17.4.1/private trixie-staging/main armhf r-cran-httr all 1.4.7+dfsg-1 [459 kB]
Get:200 http://172.17.4.1/private trixie-staging/main armhf r-cran-png armhf 0.1-8-1 [40.2 kB]
Get:201 http://172.17.4.1/private trixie-staging/main armhf r-bioc-zlibbioc all 1.46.0+dfsg-1 [9336 B]
Get:202 http://172.17.4.1/private trixie-staging/main armhf r-bioc-xvector armhf 0.40.0-1 [617 kB]
Get:203 http://172.17.4.1/private trixie-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:204 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcurl armhf 1.98-1.12+dfsg-1 [787 kB]
Get:205 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomeinfodbdata all 1.2.10-1 [12.0 MB]
Get:206 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomeinfodb all 1.36.2+dfsg-1 [3839 kB]
Get:207 http://172.17.4.1/private trixie-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
Get:208 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biostrings armhf 2.68.1-1 [13.8 MB]
Get:209 http://172.17.4.1/private trixie-staging/main armhf r-bioc-keggrest all 1.40.0+dfsg-3 [186 kB]
Get:210 http://172.17.4.1/private trixie-staging/main armhf r-bioc-annotationdbi all 1.62.2-1 [4715 kB]
Get:211 http://172.17.4.1/private trixie-staging/main armhf r-cran-xml armhf 3.99-0.14-2 [1740 kB]
Get:212 http://172.17.4.1/private trixie-staging/main armhf r-cran-xtable all 1:1.8-4-2 [689 kB]
Get:213 http://172.17.4.1/private trixie-staging/main armhf r-bioc-annotate all 1.78.0+dfsg-1 [1738 kB]
Get:214 http://172.17.4.1/private trixie-staging/main armhf r-cran-formatr all 1.14-1 [152 kB]
Get:215 http://172.17.4.1/private trixie-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:216 http://172.17.4.1/private trixie-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:217 http://172.17.4.1/private trixie-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:218 http://172.17.4.1/private trixie-staging/main armhf r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get:219 http://172.17.4.1/private trixie-staging/main armhf r-cran-codetools all 0.2-19-1 [90.9 kB]
Get:220 http://172.17.4.1/private trixie-staging/main armhf r-cran-bh all 1.81.0-1 [5776 B]
Get:221 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocparallel armhf 1.34.2-1 [1337 kB]
Get:222 http://172.17.4.1/private trixie-staging/main armhf r-bioc-limma armhf 3.56.2+dfsg-1 [1783 kB]
Get:223 http://172.17.4.1/private trixie-staging/main armhf r-cran-lattice armhf 0.21-8-2 [1371 kB]
Get:224 http://172.17.4.1/private trixie-staging/main armhf r-cran-locfit armhf 1.5-9.8-1 [483 kB]
Get:225 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgkitten all 0.2.3-1 [26.7 kB]
Get:226 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcpp armhf 1.0.11-1 [2043 kB]
Get:227 http://172.17.4.1/private trixie-staging/main armhf r-bioc-edger armhf 3.42.4+dfsg-1 [1097 kB]
Get:228 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrixstats armhf 1.0.0-1 [471 kB]
Get:229 http://172.17.4.1/private trixie-staging/main armhf r-bioc-matrixgenerics all 1.12.3-1 [411 kB]
Get:230 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrix armhf 1.6-1-1 [3777 kB]
Get:231 http://172.17.4.1/private trixie-staging/main armhf r-cran-survival armhf 3.5-7-1 [6111 kB]
Get:232 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genefilter armhf 1.82.1-1 [1107 kB]
Get:233 http://172.17.4.1/private trixie-staging/main armhf r-cran-nlme armhf 3.1.163-1 [2274 kB]
Get:234 http://172.17.4.1/private trixie-staging/main armhf r-cran-mgcv armhf 1.9-0-1 [3196 kB]
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Selecting previously unselected package r-cran-matrixstats.
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Unpacking r-cran-matrixstats (1.0.0-1) ...
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Selecting previously unselected package r-cran-matrix.
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Unpacking r-cran-matrix (1.6-1-1) ...
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Selecting previously unselected package r-cran-mgcv.
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Selecting previously unselected package sbuild-build-depends-main-dummy.
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Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.5.0-2) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up libpixman-1-0:armhf (0.42.2-1) ...
Setting up libsharpyuv0:armhf (1.3.2-0.3) ...
Setting up libfile-which-perl (1.27-2) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.2-1+b1) ...
Setting up libicu72:armhf (72.1-3) ...
Setting up liblerc4:armhf (4.0.0+ds-3) ...
Setting up bsdextrautils (2.39.2-1) ...
Setting up libdynaloader-functions-perl (0.003-3) ...
Setting up libdatrie1:armhf (0.2.13-2+b2) ...
Setting up libmagic-mgc (1:5.45-2) ...
Setting up libclone-perl:armhf (0.46-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-3) ...
Setting up libglib2.0-0:armhf (2.78.0-2+rpi1) ...
No schema files found: doing nothing.
Setting up unzip (6.0-28) ...
Setting up libdebhelper-perl (13.11.6) ...
Setting up libbrotli1:armhf (1.0.9-2+b3) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libtry-tiny-perl (0.31-2) ...
Setting up libnghttp2-14:armhf (1.56.0-1) ...
Setting up libmagic1:armhf (1:5.45-2) ...
Setting up libdeflate0:armhf (1.18-1) ...
Setting up gettext-base (0.21-13) ...
Setting up m4 (1.4.19-4) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up libboost1.81-dev:armhf (1.81.0-6) ...
Setting up file (1:5.45-2) ...
Setting up libjbig0:armhf (2.1-6.1) ...
Setting up libpcre2-16-0:armhf (10.42-4) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up zip (3.0-13) ...
Setting up libpackage-stash-xs-perl:armhf (0.30-1+b1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpcre2-32-0:armhf (10.42-4) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpkgconf3:armhf (1.8.1-1) ...
Setting up libalgorithm-c3-perl (0.11-2) ...
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Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
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Setting up libfribidi0:armhf (1.0.13-3) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16:armhf (1.6.40-1) ...
Setting up libvariable-magic-perl (0.63-1+b1) ...
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Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ...
Setting up autopoint (0.21-13) ...
Setting up libb-hooks-op-check-perl:armhf (0.22-2+b1) ...
Setting up icu-devtools (72.1-3) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up pkgconf-bin (1.8.1-1) ...
Setting up libparams-util-perl (1.102-2+b1) ...
Setting up libgfortran5:armhf (12.2.0-14+rpi1) ...
Setting up autoconf (2.71-3) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libwebp7:armhf (1.3.2-0.3) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up liblzma-dev:armhf (5.4.4-0.1) ...
Setting up libsub-name-perl:armhf (0.27-1) ...
Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-3) ...
Setting up libpcre2-posix3:armhf (10.42-4) ...
Setting up sensible-utils (0.0.20) ...
Setting up libtiff6:armhf (4.5.1+git230720-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
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Setting up libdevel-globaldestruction-perl (0.14-4) ...
Setting up libssh2-1:armhf (1.11.0-2) ...
Setting up libdevel-stacktrace-perl (2.0400-2) ...
Setting up openssl (3.0.11-1) ...
Setting up libbsd0:armhf (0.11.7-4) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libicu-dev:armhf (72.1-3) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up liburi-perl (5.21-1) ...
Setting up libblas-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-5+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up r-cran-bh (1.81.0-1) ...
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.4+20230625-2) ...
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-13) ...
Setting up libpcre2-dev:armhf (10.42-4) ...
Setting up libtool (2.4.7-7) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up fontconfig-config (2.14.2-6) ...
Setting up libpng-dev:armhf (1.6.40-1) ...
Setting up libjpeg-dev:armhf (1:2.1.5-2) ...
Setting up libcurl3-gnutls:armhf (7.88.1-10+rpi1) ...
Setting up libgfortran-12-dev:armhf (12.2.0-14+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:armhf (8.2-1.3) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up gfortran-12 (12.2.0-14+rpi1) ...
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.114-1) ...
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up ucf (3.0043+nmu1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-2) ...
Setting up libcurl4:armhf (7.88.1-10+rpi1) ...
Setting up libx11-6:armhf (2:1.8.6-1) ...
Setting up libharfbuzz0b:armhf (8.0.1-1) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (6.44-2) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libpaper1:armhf (1.1.29) ...
Creating config file /etc/papersize with new version
Setting up fontconfig (2.14.2-6) ...
Regenerating fonts cache... done.
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libpango-1.0-0:armhf (1.51.0+ds-2) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-10) ...
Setting up libpaper-utils (1.1.29) ...
Setting up man-db (2.11.2-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:12.2.0-3+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.18.0-1) ...
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Setting up xauth (1:1.1.2-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libpangoft2-1.0-0:armhf (1.51.0+ds-2) ...
Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-2) ...
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Setting up debhelper (13.11.6) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up r-base-core (4.3.1-4) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.2-1) ...
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.21-8-2) ...
Setting up r-cran-nlme (3.1.163-1) ...
Setting up r-cran-formatr (1.14-1) ...
Setting up r-cran-xml (3.99-0.14-2) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up r-cran-locfit (1.5-9.8-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.3-1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.10-1) ...
Setting up r-cran-littler (0.3.18-2) ...
Setting up r-cran-rcpp (1.0.11-1) ...
Setting up r-cran-curl (5.0.2+dfsg-1) ...
Setting up r-cran-codetools (0.2-19-1) ...
Setting up r-bioc-biocgenerics (0.46.0-1) ...
Setting up r-cran-rlang (1.1.1-1) ...
Setting up r-cran-matrixstats (1.0.0-1) ...
Setting up r-base-dev (4.3.1-4) ...
Setting up littler (0.3.18-2) ...
Setting up r-bioc-matrixgenerics (1.12.3-1) ...
Setting up r-cran-sys (3.4.2-1) ...
Setting up r-cran-plogr (0.2.0-3) ...
Setting up r-cran-mime (0.12-1) ...
Setting up libmoose-perl:armhf (2.2206-1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-dbi (1.1.3-1) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-bit (4.0.5-1) ...
Setting up r-cran-xtable (1:1.8-4-2) ...
Setting up r-cran-cli (3.6.1-1) ...
Setting up r-cran-lifecycle (1.0.3+dfsg-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-cran-bit64 (4.0.5-1) ...
Setting up r-bioc-zlibbioc (1.46.0+dfsg-1) ...
Setting up r-cran-askpass (1.2.0-1) ...
Setting up r-cran-fastmap (1.1.1-1) ...
Setting up r-cran-png (0.1-8-1) ...
Setting up r-bioc-biobase (2.60.0-1) ...
Setting up r-cran-jsonlite (1.8.7+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-cpp11 (0.4.6-1) ...
Setting up r-bioc-s4vectors (0.38.1+dfsg-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up r-bioc-limma (3.56.2+dfsg-1) ...
Setting up r-cran-matrix (1.6-1-1) ...
Setting up r-cran-mgcv (1.9-0-1) ...
Setting up r-cran-cachem (1.0.8-1) ...
Setting up r-bioc-iranges (2.34.1-1) ...
Setting up r-cran-rcurl (1.98-1.12+dfsg-1) ...
Setting up r-cran-vctrs (0.6.3-1) ...
Setting up r-cran-openssl (2.1.0+dfsg-1) ...
Setting up r-bioc-biocparallel (1.34.2-1) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up r-bioc-edger (3.42.4+dfsg-1) ...
Setting up r-cran-survival (3.5-7-1) ...
Setting up r-bioc-genomeinfodb (1.36.2+dfsg-1) ...
Setting up r-cran-httr (1.4.7+dfsg-1) ...
Setting up r-cran-memoise (2.0.1-1) ...
Setting up r-cran-blob (1.2.4-1) ...
Setting up r-bioc-xvector (0.40.0-1) ...
Setting up dh-r (20230912) ...
Setting up r-cran-rsqlite (2.3.1-1) ...
Setting up r-bioc-biostrings (2.68.1-1) ...
Setting up r-bioc-keggrest (1.40.0+dfsg-3) ...
Setting up r-bioc-annotationdbi (1.62.2-1) ...
Setting up r-bioc-annotate (1.78.0+dfsg-1) ...
Setting up r-bioc-genefilter (1.82.1-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.36-9+rpi1+deb12u1) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep 1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.40-2+rpi2 dpkg-dev_1.21.22+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-9+rpi1+deb12u1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.1.38-1+rpi1
Package versions: adduser_3.137 apt_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2+rpi2 binutils-arm-linux-gnueabihf_2.40-2+rpi2 binutils-common_2.40-2+rpi2 bsdextrautils_2.39.2-1 bsdutils_1:2.39.2-1 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20230311 coreutils_9.1-1 cpp_4:12.2.0-3+rpi1 cpp-12_12.2.0-14+rpi1 dash_0.5.12-6 dctrl-tools_2.24-3 debconf_1.5.82 debhelper_13.11.6 debianutils_5.13 dh-autoreconf_20 dh-r_20230912 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1.1 dpkg_1.21.22+rpi1 dpkg-dev_1.21.22+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-6 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:12.2.0-3+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-3+rpi1 gcc-10-base_10.4.0-7+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: r-bioc-sva
Binary: r-bioc-sva
Architecture: any
Version: 3.48.0-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://bioconductor.org/packages/sva/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-sva
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-sva.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-mgcv, r-bioc-genefilter, r-bioc-biocparallel, r-cran-matrixstats, r-bioc-limma, r-bioc-edger
Package-List:
r-bioc-sva deb gnu-r optional arch=any
Checksums-Sha1:
7a1d8ce332fa040710c4e5bb67bb88f7030648f3 453292 r-bioc-sva_3.48.0.orig.tar.gz
24b0aa4071f7cda8a26bd03128bbd50d99cdd8e3 5964 r-bioc-sva_3.48.0-1.debian.tar.xz
Checksums-Sha256:
e3a58025603ddb943334b8b897b5f6aaa33e93dc5cbbf6053b560beb4e51d1b8 453292 r-bioc-sva_3.48.0.orig.tar.gz
6666f9e0a93979183502b81b0c818ae66b499d1ee87bdc85f498a1b6d725720b 5964 r-bioc-sva_3.48.0-1.debian.tar.xz
Files:
6a2553ec4e50d85e75a764a83b8dc74b 453292 r-bioc-sva_3.48.0.orig.tar.gz
5651159ec6b0cbfb2f1e9475dca4b541 5964 r-bioc-sva_3.48.0-1.debian.tar.xz
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gpgv: Signature made Thu Jul 27 13:24:21 2023 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-sva_3.48.0-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-sva in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-sva_3.48.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-sva_3.48.0-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-ef743269-bb95-4913-bf14-c2ea4a8b3184
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-bioc-sva
dpkg-buildpackage: info: source version 3.48.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-sva/ -a -O--buildsystem=R
I: R Package: sva Version: 3.48.0
I: Building using R version 4.3.1-4
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Thu, 27 Jul 2023 15:19:31 +0200
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-sva/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-sva/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 27 Jul 2023 15:19:31 +0200'"
* installing *source* package ‘sva’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Raspbian 12.2.0-14+rpi1) 12.2.0’
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c sva.c -o sva.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o sva.so sva.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-sva/usr/lib/R/site-library/00LOCK-r-bioc-sva-3.48.0/00new/sva/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sva)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306.
W: Ignoring specified R dependency: R (>= 3.2)
I: Using r-cran-mgcv for Depends:mgcv
I: Using r-bioc-genefilter for Depends:genefilter
I: Using r-bioc-biocparallel for Depends:BiocParallel
W: Cannot find a debian package for Suggests:pamr
I: Using r-bioc-bladderbatch for Suggests:bladderbatch
I: Using r-bioc-biocstyle for Suggests:BiocStyle
W: Cannot find a debian package for Suggests:zebrafishRNASeq
I: Using r-cran-testthat for Suggests:testthat
I: Using r-cran-matrixstats for Imports:matrixStats
I: Using r-bioc-limma for Imports:limma
I: Using r-bioc-edger for Imports:edgeR
I: BioConductor API version: r-api-bioc-3.17
I: Use r-bioc-sva as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dpkg-gencontrol: warning: Depends field of package r-bioc-sva: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package r-bioc-sva: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-sva-dbgsym' in '../r-bioc-sva-dbgsym_3.48.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-sva' in '../r-bioc-sva_3.48.0-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-bioc-sva_3.48.0-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../r-bioc-sva_3.48.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-09-30T03:01:50Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-sva_3.48.0-1_armhf.changes:
----------------------------------
Format: 1.8
Date: Thu, 27 Jul 2023 15:19:31 +0200
Source: r-bioc-sva
Binary: r-bioc-sva r-bioc-sva-dbgsym
Architecture: armhf
Version: 3.48.0-1
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-sva - GNU R Surrogate Variable Analysis
Changes:
r-bioc-sva (3.48.0-1) unstable; urgency=medium
.
* New upstream version
* Standards-Version: 4.6.2 (routine-update)
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Files:
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: r-bioc-sva
Binary: r-bioc-sva r-bioc-sva-dbgsym
Architecture: armhf
Version: 3.48.0-1
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sat, 30 Sep 2023 03:01:49 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.71-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-13),
autotools-dev (= 20220109.1),
base-files (= 13+rpi1),
base-passwd (= 3.6.1),
bash (= 5.2.15-2),
binutils (= 2.40-2+rpi2),
binutils-arm-linux-gnueabihf (= 2.40-2+rpi2),
binutils-common (= 2.40-2+rpi2),
bsdextrautils (= 2.39.2-1),
bsdutils (= 1:2.39.2-1),
build-essential (= 12.9),
bzip2 (= 1.0.8-5+b2),
ca-certificates (= 20230311),
coreutils (= 9.1-1),
cpp (= 4:12.2.0-3+rpi1),
cpp-12 (= 12.2.0-14+rpi1),
dash (= 0.5.12-6),
dctrl-tools (= 2.24-3),
debconf (= 1.5.82),
debhelper (= 13.11.6),
debianutils (= 5.13),
dh-autoreconf (= 20),
dh-r (= 20230912),
dh-strip-nondeterminism (= 1.13.1-1),
diffutils (= 1:3.8-4),
dpkg (= 1.21.22+rpi1),
dpkg-dev (= 1.21.22+rpi1),
dwz (= 0.15-1),
file (= 1:5.45-2),
findutils (= 4.9.0-5),
fontconfig (= 2.14.2-6),
fontconfig-config (= 2.14.2-6),
fonts-dejavu-core (= 2.37-8),
fonts-dejavu-mono (= 2.37-8),
g++ (= 4:12.2.0-3+rpi1),
g++-12 (= 12.2.0-14+rpi1),
gcc (= 4:12.2.0-3+rpi1),
gcc-12 (= 12.2.0-14+rpi1),
gcc-12-base (= 12.2.0-14+rpi1),
gettext (= 0.21-13),
gettext-base (= 0.21-13),
gfortran (= 4:12.2.0-3+rpi1),
gfortran-12 (= 12.2.0-14+rpi1),
grep (= 3.11-3),
groff-base (= 1.23.0-2),
gzip (= 1.12-1),
hostname (= 3.23+nmu1),
icu-devtools (= 72.1-3),
init-system-helpers (= 1.65.2),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.1-3),
libalgorithm-c3-perl (= 0.11-2),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 12.2.0-14+rpi1),
libatomic1 (= 12.2.0-14+rpi1),
libattr1 (= 1:2.5.1-4),
libaudit-common (= 1:3.1.1-1),
libaudit1 (= 1:3.1.1-1),
libb-hooks-endofscope-perl (= 0.26-1),
libb-hooks-op-check-perl (= 0.22-2+b1),
libbinutils (= 2.40-2+rpi2),
libblas-dev (= 3.11.0-2),
libblas3 (= 3.11.0-2),
libblkid1 (= 2.39.2-1),
libboost1.81-dev (= 1.81.0-6),
libbrotli1 (= 1.0.9-2+b3),
libbsd0 (= 0.11.7-4),
libbz2-1.0 (= 1.0.8-5+b2),
libbz2-dev (= 1.0.8-5+b2),
libc-bin (= 2.36-9+rpi1+deb12u1),
libc-dev-bin (= 2.36-9+rpi1+deb12u1),
libc6 (= 2.36-9+rpi1+deb12u1),
libc6-dev (= 2.36-9+rpi1+deb12u1),
libcairo2 (= 1.18.0-1),
libcap-ng0 (= 0.8.3-1+b1),
libcap2 (= 1:2.66-4),
libcc1-0 (= 12.2.0-14+rpi1),
libclass-c3-perl (= 0.35-2),
libclass-load-perl (= 0.25-2),
libclass-load-xs-perl (= 0.10-2+b1),
libclone-perl (= 0.46-1),
libcom-err2 (= 1.47.0-2),
libcrypt-dev (= 1:4.4.36-2),
libcrypt1 (= 1:4.4.36-2),
libctf-nobfd0 (= 2.40-2+rpi2),
libctf0 (= 2.40-2+rpi2),
libcurl3-gnutls (= 7.88.1-10+rpi1),
libcurl4 (= 7.88.1-10+rpi1),
libdata-optlist-perl (= 0.114-1),
libdatrie1 (= 0.2.13-2+b2),
libdb5.3 (= 5.3.28+dfsg2-2),
libdebconfclient0 (= 0.270),
libdebhelper-perl (= 13.11.6),
libdeflate0 (= 1.18-1),
libdevel-callchecker-perl (= 0.008-2),
libdevel-globaldestruction-perl (= 0.14-4),
libdevel-overloadinfo-perl (= 0.007-1),
libdevel-stacktrace-perl (= 2.0400-2),
libdist-checkconflicts-perl (= 0.11-2),
libdpkg-perl (= 1.21.22+rpi1),
libdynaloader-functions-perl (= 0.003-3),
libelf1 (= 0.188-2.1+rpi1),
libencode-locale-perl (= 1.05-3),
libeval-closure-perl (= 0.14-3),
libexpat1 (= 2.5.0-2),
libffi8 (= 3.4.4-1),
libfile-stripnondeterminism-perl (= 1.13.1-1),
libfile-which-perl (= 1.27-2),
libfontconfig1 (= 2.14.2-6),
libfreetype6 (= 2.13.2+dfsg-1),
libfribidi0 (= 1.0.13-3),
libgcc-12-dev (= 12.2.0-14+rpi1),
libgcc-s1 (= 12.2.0-14+rpi1),
libgcrypt20 (= 1.10.2-3),
libgdbm-compat4 (= 1.23-3),
libgdbm6 (= 1.23-3),
libgfortran-12-dev (= 12.2.0-14+rpi1),
libgfortran5 (= 12.2.0-14+rpi1),
libglib2.0-0 (= 2.78.0-2+rpi1),
libgmp10 (= 2:6.3.0+dfsg-2),
libgnutls30 (= 3.8.1-4),
libgomp1 (= 12.2.0-14+rpi1),
libgpg-error0 (= 1.47-2),
libgraphite2-3 (= 1.3.14-1),
libgssapi-krb5-2 (= 1.20.1-4),
libharfbuzz0b (= 8.0.1-1),
libhogweed6 (= 3.9.1-2),
libhttp-date-perl (= 6.05-2),
libhttp-message-perl (= 6.44-2),
libice6 (= 2:1.0.10-1),
libicu-dev (= 72.1-3),
libicu72 (= 72.1-3),
libidn2-0 (= 2.3.4-1),
libio-html-perl (= 1.004-3),
libisl23 (= 0.26-3),
libjansson4 (= 2.14-2),
libjbig0 (= 2.1-6.1),
libjpeg-dev (= 1:2.1.5-2),
libjpeg62-turbo (= 1:2.1.5-2),
libjpeg62-turbo-dev (= 1:2.1.5-2),
libk5crypto3 (= 1.20.1-4),
libkeyutils1 (= 1.6.3-2),
libkrb5-3 (= 1.20.1-4),
libkrb5support0 (= 1.20.1-4),
liblapack-dev (= 3.11.0-2),
liblapack3 (= 3.11.0-2),
libldap-2.5-0 (= 2.5.13+dfsg-5+rpi1),
liblerc4 (= 4.0.0+ds-3),
liblwp-mediatypes-perl (= 6.04-2),
liblz4-1 (= 1.9.4-1+rpi1+b1),
liblzma-dev (= 5.4.4-0.1),
liblzma5 (= 5.4.4-0.1),
libmagic-mgc (= 1:5.45-2),
libmagic1 (= 1:5.45-2),
libmd0 (= 1.1.0-1),
libmodule-implementation-perl (= 0.09-2),
libmodule-runtime-conflicts-perl (= 0.003-2),
libmodule-runtime-perl (= 0.016-2),
libmoose-perl (= 2.2206-1),
libmount1 (= 2.39.2-1),
libmpc3 (= 1.3.1-1),
libmpfr6 (= 4.2.0-1),
libmro-compat-perl (= 0.15-2),
libnamespace-clean-perl (= 0.27-2),
libncurses-dev (= 6.4+20230625-2),
libncurses6 (= 6.4+20230625-2),
libncursesw6 (= 6.4+20230625-2),
libnettle8 (= 3.9.1-2),
libnghttp2-14 (= 1.56.0-1),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libp11-kit0 (= 0.25.0-4),
libpackage-deprecationmanager-perl (= 0.18-1),
libpackage-stash-perl (= 0.40-1),
libpackage-stash-xs-perl (= 0.30-1+b1),
libpam-modules (= 1.5.2-7),
libpam-modules-bin (= 1.5.2-7),
libpam-runtime (= 1.5.2-7),
libpam0g (= 1.5.2-7),
libpango-1.0-0 (= 1.51.0+ds-2),
libpangocairo-1.0-0 (= 1.51.0+ds-2),
libpangoft2-1.0-0 (= 1.51.0+ds-2),
libpaper-utils (= 1.1.29),
libpaper1 (= 1.1.29),
libparams-classify-perl (= 0.015-2+b1),
libparams-util-perl (= 1.102-2+b1),
libpcre2-16-0 (= 10.42-4),
libpcre2-32-0 (= 10.42-4),
libpcre2-8-0 (= 10.42-4),
libpcre2-dev (= 10.42-4),
libpcre2-posix3 (= 10.42-4),
libperl5.36 (= 5.36.0-9),
libpipeline1 (= 1.5.7-1),
libpixman-1-0 (= 0.42.2-1),
libpkgconf3 (= 1.8.1-1),
libpng-dev (= 1.6.40-1),
libpng16-16 (= 1.6.40-1),
libpsl5 (= 0.21.2-1+b1),
libreadline-dev (= 8.2-1.3),
libreadline8 (= 8.2-1.3),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.28+dfsg1-3),
libsasl2-modules-db (= 2.1.28+dfsg1-3),
libseccomp2 (= 2.5.4-1+rpi1+b1),
libselinux1 (= 3.5-1),
libsharpyuv0 (= 1.3.2-0.3),
libsm6 (= 2:1.2.3-1),
libsmartcols1 (= 2.39.2-1),
libssh2-1 (= 1.11.0-2),
libssl3 (= 3.0.11-1),
libstdc++-12-dev (= 12.2.0-14+rpi1),
libstdc++6 (= 12.2.0-14+rpi1),
libsub-exporter-perl (= 0.990-1),
libsub-exporter-progressive-perl (= 0.001013-3),
libsub-identify-perl (= 0.14-3),
libsub-install-perl (= 0.929-1),
libsub-name-perl (= 0.27-1),
libsub-override-perl (= 0.09-4),
libswitch-perl (= 2.17-3),
libsystemd0 (= 252.12-1~deb12u1+rpi1),
libtasn1-6 (= 4.19.0-3),
libtcl8.6 (= 8.6.13+dfsg-2),
libthai-data (= 0.1.29-1),
libthai0 (= 0.1.29-1),
libtiff6 (= 4.5.1+git230720-1),
libtimedate-perl (= 2.3300-2),
libtinfo6 (= 6.4+20230625-2),
libtirpc-common (= 1.3.3+ds-1),
libtirpc-dev (= 1.3.3+ds-1),
libtirpc3 (= 1.3.3+ds-1),
libtk8.6 (= 8.6.13-2),
libtool (= 2.4.7-7),
libtry-tiny-perl (= 0.31-2),
libubsan1 (= 12.2.0-14+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 252.12-1~deb12u1+rpi1),
libunistring5 (= 1.1-2),
liburi-perl (= 5.21-1),
libuuid1 (= 2.39.2-1),
libvariable-magic-perl (= 0.63-1+b1),
libwebp7 (= 1.3.2-0.3),
libwww-curl-perl (= 4.17-10),
libwww-curl-simple-perl (= 0.100191-3),
libx11-6 (= 2:1.8.6-1),
libx11-data (= 2:1.8.6-1),
libxau6 (= 1:1.0.9-1),
libxcb-render0 (= 1.15-1),
libxcb-shm0 (= 1.15-1),
libxcb1 (= 1.15-1),
libxdmcp6 (= 1:1.1.2-3),
libxext6 (= 2:1.3.4-1),
libxft2 (= 2.3.6-1),
libxml2 (= 2.9.14+dfsg-1.3),
libxmuu1 (= 2:1.1.3-3),
libxrender1 (= 1:0.9.10-1.1),
libxss1 (= 1:1.2.3-1),
libxt6 (= 1:1.2.1-1.1),
libzstd1 (= 1.5.5+dfsg2-1),
linux-libc-dev (= 6.1.38-1+rpi1),
littler (= 0.3.18-2),
login (= 1:4.13+dfsg1-1),
lsb-base (= 11.6+rpi1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.11.2-3),
mawk (= 1.3.4.20230808-1),
ncurses-base (= 6.4+20230625-2),
ncurses-bin (= 6.4+20230625-2),
openssl (= 3.0.11-1),
patch (= 2.7.6-7),
perl (= 5.36.0-9),
perl-base (= 5.36.0-9),
perl-modules-5.36 (= 5.36.0-9),
pkg-config (= 1.8.1-1),
pkgconf (= 1.8.1-1),
pkgconf-bin (= 1.8.1-1),
po-debconf (= 1.0.21+nmu1),
r-base-core (= 4.3.1-4),
r-base-dev (= 4.3.1-4),
r-bioc-annotate (= 1.78.0+dfsg-1),
r-bioc-annotationdbi (= 1.62.2-1),
r-bioc-biobase (= 2.60.0-1),
r-bioc-biocgenerics (= 0.46.0-1),
r-bioc-biocparallel (= 1.34.2-1),
r-bioc-biostrings (= 2.68.1-1),
r-bioc-edger (= 3.42.4+dfsg-1),
r-bioc-genefilter (= 1.82.1-1),
r-bioc-genomeinfodb (= 1.36.2+dfsg-1),
r-bioc-genomeinfodbdata (= 1.2.10-1),
r-bioc-iranges (= 2.34.1-1),
r-bioc-keggrest (= 1.40.0+dfsg-3),
r-bioc-limma (= 3.56.2+dfsg-1),
r-bioc-matrixgenerics (= 1.12.3-1),
r-bioc-s4vectors (= 0.38.1+dfsg-1),
r-bioc-xvector (= 0.40.0-1),
r-bioc-zlibbioc (= 1.46.0+dfsg-1),
r-cran-askpass (= 1.2.0-1),
r-cran-bh (= 1.81.0-1),
r-cran-bit (= 4.0.5-1),
r-cran-bit64 (= 4.0.5-1),
r-cran-bitops (= 1.0-7-1),
r-cran-blob (= 1.2.4-1),
r-cran-cachem (= 1.0.8-1),
r-cran-cli (= 3.6.1-1),
r-cran-codetools (= 0.2-19-1),
r-cran-cpp11 (= 0.4.6-1),
r-cran-crayon (= 1.5.2-1),
r-cran-curl (= 5.0.2+dfsg-1),
r-cran-dbi (= 1.1.3-1),
r-cran-fastmap (= 1.1.1-1),
r-cran-formatr (= 1.14-1),
r-cran-futile.logger (= 1.4.3-4),
r-cran-futile.options (= 1.0.1-3),
r-cran-glue (= 1.6.2-1),
r-cran-httr (= 1.4.7+dfsg-1),
r-cran-jsonlite (= 1.8.7+dfsg-1),
r-cran-lambda.r (= 1.2.4-2),
r-cran-lattice (= 0.21-8-2),
r-cran-lifecycle (= 1.0.3+dfsg-1),
r-cran-littler (= 0.3.18-2),
r-cran-locfit (= 1.5-9.8-1),
r-cran-matrix (= 1.6-1-1),
r-cran-matrixstats (= 1.0.0-1),
r-cran-memoise (= 2.0.1-1),
r-cran-mgcv (= 1.9-0-1),
r-cran-mime (= 0.12-1),
r-cran-nlme (= 3.1.163-1),
r-cran-openssl (= 2.1.0+dfsg-1),
r-cran-pkgconfig (= 2.0.3-2),
r-cran-pkgkitten (= 0.2.3-1),
r-cran-plogr (= 0.2.0-3),
r-cran-png (= 0.1-8-1),
r-cran-r6 (= 2.5.1-1),
r-cran-rcpp (= 1.0.11-1),
r-cran-rcurl (= 1.98-1.12+dfsg-1),
r-cran-rlang (= 1.1.1-1),
r-cran-rsqlite (= 2.3.1-1),
r-cran-snow (= 1:0.4.4-2),
r-cran-survival (= 3.5-7-1),
r-cran-sys (= 3.4.2-1),
r-cran-vctrs (= 0.6.3-1),
r-cran-xml (= 3.99-0.14-2),
r-cran-xtable (= 1:1.8-4-2),
readline-common (= 8.2-1.3),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-1),
sensible-utils (= 0.0.20),
sysvinit-utils (= 3.08-1),
tar (= 1.34+dfsg-1.2),
tzdata (= 2023c-10),
ucf (= 3.0043+nmu1),
unzip (= 6.0-28),
usr-is-merged (= 37),
util-linux (= 2.39.2-1),
x11-common (= 1:7.7+23),
xauth (= 1:1.1.2-1),
xdg-utils (= 1.1.3-4.1),
xz-utils (= 5.4.4-0.1),
zip (= 3.0-13),
zlib1g (= 1:1.2.13.dfsg-3),
zlib1g-dev (= 1:1.2.13.dfsg-3)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
LC_COLLATE="C.UTF-8"
SOURCE_DATE_EPOCH="1690463971"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-sva-dbgsym_3.48.0-1_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 2972 bytes: control archive=532 bytes.
377 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-sva-dbgsym
Source: r-bioc-sva
Version: 3.48.0-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 15
Depends: r-bioc-sva (= 3.48.0-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-sva
Build-Ids: 7149f43ba29aa73c328d56029617e58673639317
drwxr-xr-x root/root 0 2023-07-27 13:19 ./
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/debug/.build-id/71/
-rw-r--r-- root/root 4596 2023-07-27 13:19 ./usr/lib/debug/.build-id/71/49f43ba29aa73c328d56029617e58673639317.debug
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/share/
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-07-27 13:19 ./usr/share/doc/r-bioc-sva-dbgsym -> r-bioc-sva
r-bioc-sva_3.48.0-1_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 453808 bytes: control archive=2268 bytes.
1697 bytes, 31 lines control
3242 bytes, 39 lines md5sums
Package: r-bioc-sva
Version: 3.48.0-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 960
Depends: r-api-4.0, r-api-bioc-3.17, r-cran-mgcv, r-bioc-genefilter, r-bioc-biocparallel, r-cran-matrixstats, r-bioc-limma, r-bioc-edger
Suggests: r-bioc-bladderbatch, r-bioc-biocstyle, r-cran-testthat
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/sva/
Description: GNU R Surrogate Variable Analysis
The sva package contains functions for removing batch
effects and other unwanted variation in high-throughput
experiment. Specifically, the sva package contains functions
for the identifying and building surrogate variables for
high-dimensional data sets. Surrogate variables are covariates
constructed directly from high-dimensional data (like gene
expression/RNA sequencing/methylation/brain imaging data) that
can be used in subsequent analyses to adjust for unknown,
unmodeled, or latent sources of noise. The sva package can be
used to remove artifacts in three ways: (1) identifying and
estimating surrogate variables for unknown sources of variation
in high-throughput experiments (Leek and Storey 2007 PLoS
Genetics,2008 PNAS), (2) directly removing known batch
effects using ComBat (Johnson et al. 2007 Biostatistics) and (3) removing
batch effects with known control probes (Leek 2014 biorXiv).
Removing batch effects and using surrogate variables in
differential expression analysis have been shown to reduce
dependence, stabilize error rate estimates, and improve
reproducibility, see (Leek and Storey 2007 PLoS Genetics, 2008
PNAS or Leek et al. 2011 Nat. Reviews Genetics).
drwxr-xr-x root/root 0 2023-07-27 13:19 ./
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/R/
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/R/site-library/sva/
-rw-r--r-- root/root 2486 2023-07-27 13:19 ./usr/lib/R/site-library/sva/DESCRIPTION
-rw-r--r-- root/root 2253 2023-07-27 13:19 ./usr/lib/R/site-library/sva/INDEX
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/R/site-library/sva/Meta/
-rw-r--r-- root/root 1007 2023-07-27 13:19 ./usr/lib/R/site-library/sva/Meta/Rd.rds
-rw-r--r-- root/root 123 2023-07-27 13:19 ./usr/lib/R/site-library/sva/Meta/features.rds
-rw-r--r-- root/root 938 2023-07-27 13:19 ./usr/lib/R/site-library/sva/Meta/hsearch.rds
-rw-r--r-- root/root 329 2023-07-27 13:19 ./usr/lib/R/site-library/sva/Meta/links.rds
-rw-r--r-- root/root 727 2023-07-27 13:19 ./usr/lib/R/site-library/sva/Meta/nsInfo.rds
-rw-r--r-- root/root 1800 2023-07-27 13:19 ./usr/lib/R/site-library/sva/Meta/package.rds
-rw-r--r-- root/root 237 2023-07-27 13:19 ./usr/lib/R/site-library/sva/Meta/vignette.rds
-rw-r--r-- root/root 1298 2023-07-27 13:19 ./usr/lib/R/site-library/sva/NAMESPACE
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/R/site-library/sva/R/
-rw-r--r-- root/root 1058 2023-07-27 13:19 ./usr/lib/R/site-library/sva/R/sva
-rw-r--r-- root/root 74969 2023-07-27 13:19 ./usr/lib/R/site-library/sva/R/sva.rdb
-rw-r--r-- root/root 759 2023-07-27 13:19 ./usr/lib/R/site-library/sva/R/sva.rdx
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/R/site-library/sva/doc/
-rw-r--r-- root/root 1332 2023-07-27 13:19 ./usr/lib/R/site-library/sva/doc/index.html
-rw-r--r-- root/root 7432 2023-07-27 13:19 ./usr/lib/R/site-library/sva/doc/sva.R
-rw-r--r-- root/root 26645 2023-07-27 13:19 ./usr/lib/R/site-library/sva/doc/sva.Rnw
-rw-r--r-- root/root 238211 2023-07-27 13:19 ./usr/lib/R/site-library/sva/doc/sva.pdf
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/R/site-library/sva/extdata/
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/R/site-library/sva/extdata/bwtool/
-rw-r--r-- root/root 65973 2023-07-27 13:19 ./usr/lib/R/site-library/sva/extdata/bwtool/SRR595926_degradeStats_polyA.txt
-rw-r--r-- root/root 64421 2023-07-27 13:19 ./usr/lib/R/site-library/sva/extdata/bwtool/SRR604050_degradeStats_polyA.txt
-rw-r--r-- root/root 65283 2023-07-27 13:19 ./usr/lib/R/site-library/sva/extdata/bwtool/SRR604098_degradeStats_polyA.txt
-rw-r--r-- root/root 61295 2023-07-27 13:19 ./usr/lib/R/site-library/sva/extdata/bwtool/SRR607214_degradeStats_polyA.txt
-rw-r--r-- root/root 64639 2023-07-27 13:19 ./usr/lib/R/site-library/sva/extdata/bwtool/SRR608456_degradeStats_polyA.txt
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/R/site-library/sva/extdata/region_matrix_all/
-rw-r--r-- root/root 50378 2023-07-27 13:19 ./usr/lib/R/site-library/sva/extdata/region_matrix_all/gtex_5sample_region_matrix.txt
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/R/site-library/sva/extdata/region_matrix_one/
-rw-r--r-- root/root 29621 2023-07-27 13:19 ./usr/lib/R/site-library/sva/extdata/region_matrix_one/SRR595926.cov
-rw-r--r-- root/root 29316 2023-07-27 13:19 ./usr/lib/R/site-library/sva/extdata/region_matrix_one/SRR604050.cov
-rw-r--r-- root/root 29433 2023-07-27 13:19 ./usr/lib/R/site-library/sva/extdata/region_matrix_one/SRR604098.cov
-rw-r--r-- root/root 28188 2023-07-27 13:19 ./usr/lib/R/site-library/sva/extdata/region_matrix_one/SRR607214.cov
-rw-r--r-- root/root 29338 2023-07-27 13:19 ./usr/lib/R/site-library/sva/extdata/region_matrix_one/SRR608456.cov
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/R/site-library/sva/help/
-rw-r--r-- root/root 334 2023-07-27 13:19 ./usr/lib/R/site-library/sva/help/AnIndex
-rw-r--r-- root/root 217 2023-07-27 13:19 ./usr/lib/R/site-library/sva/help/aliases.rds
-rw-r--r-- root/root 283 2023-07-27 13:19 ./usr/lib/R/site-library/sva/help/paths.rds
-rw-r--r-- root/root 37315 2023-07-27 13:19 ./usr/lib/R/site-library/sva/help/sva.rdb
-rw-r--r-- root/root 530 2023-07-27 13:19 ./usr/lib/R/site-library/sva/help/sva.rdx
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/R/site-library/sva/html/
-rw-r--r-- root/root 3818 2023-07-27 13:19 ./usr/lib/R/site-library/sva/html/00Index.html
-rw-r--r-- root/root 1844 2023-07-27 13:19 ./usr/lib/R/site-library/sva/html/R.css
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/lib/R/site-library/sva/libs/
-rw-r--r-- root/root 5384 2023-07-27 13:19 ./usr/lib/R/site-library/sva/libs/sva.so
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/share/
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/share/doc/r-bioc-sva/
-rw-r--r-- root/root 653 2023-07-27 13:19 ./usr/share/doc/r-bioc-sva/changelog.Debian.gz
-rw-r--r-- root/root 10027 2023-07-27 13:19 ./usr/share/doc/r-bioc-sva/copyright
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/share/lintian/
drwxr-xr-x root/root 0 2023-07-27 13:19 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 112 2023-07-27 13:19 ./usr/share/lintian/overrides/r-bioc-sva
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 2648
Build-Time: 30
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 97
Job: r-bioc-sva_3.48.0-1
Machine Architecture: arm64
Package: r-bioc-sva
Package-Time: 136
Source-Version: 3.48.0-1
Space: 2648
Status: successful
Version: 3.48.0-1
--------------------------------------------------------------------------------
Finished at 2023-09-30T03:01:50Z
Build needed 00:02:16, 2648k disk space