Build log for r-bioc-sva (3.42.0-1) on armhf

r-bioc-sva → 3.42.0-1 → armhf → 2021-12-04 06:22:07

sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019

+==============================================================================+
| r-bioc-sva 3.42.0-1 (armhf)                  Sat, 04 Dec 2021 05:58:32 +0000 |
+==============================================================================+

Package: r-bioc-sva
Version: 3.42.0-1
Source Version: 3.42.0-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-4ec9abcc-ea0e-4e21-b6f8-3ae7ce4903ef' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-sva-MLjoVv/resolver-02rQhz' with '<<RESOLVERDIR>>'

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| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.6 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.5 MB]
Fetched 26.1 MB in 13s (1950 kB/s)
Reading package lists...

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| Fetch source files                                                           |
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Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-bioc-sva' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-sva.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-sva.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 449 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-bioc-sva 3.42.0-1 (dsc) [2113 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-bioc-sva 3.42.0-1 (tar) [441 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-bioc-sva 3.42.0-1 (diff) [5796 B]
Fetched 449 kB in 0s (1776 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-sva-MLjoVv/r-bioc-sva-3.42.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-sva-MLjoVv' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-mgcv, r-bioc-genefilter, r-bioc-biocparallel, r-cran-matrixstats, r-bioc-limma, r-bioc-edger, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-mgcv, r-bioc-genefilter, r-bioc-biocparallel, r-cran-matrixstats, r-bioc-limma, r-bioc-edger, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [425 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [509 B]
Fetched 1891 B in 0s (48.2 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
  fontconfig fontconfig-config fonts-dejavu-core gcc-10-base gettext
  gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian
  libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev
  libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
  libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
  libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
  libdevel-globaldestruction-perl libdevel-overloadinfo-perl
  libdevel-stacktrace-perl libdist-checkconflicts-perl
  libdynaloader-functions-perl libelf1 libencode-locale-perl
  libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
  libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev
  libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
  libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67
  libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
  libmagic1 libmd0 libmodule-implementation-perl
  libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
  libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
  libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
  libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
  libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
  libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
  libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
  libreadline-dev librtmp1 libscalar-list-utils-perl libsigsegv2 libsm6
  libssh2-1 libstdc++-10-dev libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
  libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
  libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl
  libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
  libxss1 libxt6 littler m4 man-db openssl pkg-config po-debconf r-base-core
  r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase
  r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-edger
  r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges
  r-bioc-keggrest r-bioc-limma r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc
  r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob
  r-cran-cachem r-cran-crayon r-cran-curl r-cran-dbi r-cran-ellipsis
  r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options
  r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lambda.r r-cran-lattice
  r-cran-littler r-cran-locfit r-cran-matrix r-cran-matrixstats r-cran-memoise
  r-cran-mgcv r-cran-mime r-cran-nlme r-cran-openssl r-cran-pkgconfig
  r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-r6 r-cran-rcpp r-cran-rcurl
  r-cran-rlang r-cran-rsqlite r-cran-snow r-cran-survival r-cran-sys
  r-cran-vctrs r-cran-xml r-cran-xtable ucf unzip x11-common xauth xdg-utils
  zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc debtags dh-make
  postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
  gfortran-doc gfortran-11-doc libcoarrays-dev groff liblapack-doc
  libboost-doc libboost1.74-doc libboost-atomic1.74-dev
  libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev
  libboost-contract1.74-dev libboost-coroutine1.74-dev
  libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
  libboost-filesystem1.74-dev libboost-graph1.74-dev
  libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
  libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
  libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
  libboost-program-options1.74-dev libboost-python1.74-dev
  libboost-random1.74-dev libboost-regex1.74-dev
  libboost-serialization1.74-dev libboost-stacktrace1.74-dev
  libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
  libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
  libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
  icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc
  libstdc++-10-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl
  libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser
  libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
  texlive-base texlive-latex-base texlive-plain-generic
  texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
  texlive-latex-recommended texlive-latex-extra texinfo r-bioc-go.db
  r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-bioc-biocstyle r-cran-knitr
  r-bioc-all r-bioc-genomicranges r-bioc-delayedarray r-bioc-rsamtools
  r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc
  r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread
  r-cran-codetools r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures
  r-cran-readr r-bioc-rhdf5 r-bioc-summarizedexperiment r-cran-statmod
  r-cran-rcolorbrewer r-cran-markdown r-cran-biasedurn r-cran-ellipse
  r-cran-gplots r-cran-testthat r-cran-roxygen2 r-cran-rmarkdown r-cran-covr
  r-cran-pillar r-cran-rstudioapi r-cran-magrittr r-cran-rmysql r-cran-shiny
  r-cran-dplyr r-cran-forcats r-cran-ggplot2 r-cran-r.utils r-cran-stringr
  r-cran-waldo r-cran-withr r-cran-httpuv r-cran-jpeg r-cran-xml2 r-cran-plyr
  r-cran-sf r-cran-getopt r-cran-interp r-cran-gam r-cran-base64enc
  r-cran-digest r-cran-inline r-cran-cli r-cran-gert r-cran-gh r-cran-hms
  r-cran-rvest r-cran-rmpi r-cran-rsprng r-cran-rlecuyer r-cran-zeallot
  r-cran-plm r-cran-zoo
Recommended packages:
  devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
  libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
  libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl
  libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
  libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs
  r-cran-doparallel r-bioc-rsamtools r-cran-batchtools r-cran-rmpi
  r-cran-class r-cran-knitr r-cran-mass r-cran-statmod r-bioc-go.db
  r-bioc-org.hs.eg.db r-cran-testthat r-cran-withr r-cran-mockery
  r-cran-httpuv r-cran-webutils r-cran-testit r-cran-codetools r-cran-sp
  r-cran-sodium r-cran-rmarkdown r-cran-dbitest r-cran-tibble r-cran-generics
  r-cran-xml2 r-cran-dplyr r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl
  libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
  fontconfig fontconfig-config fonts-dejavu-core gcc-10-base gettext
  gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian
  libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev
  libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
  libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
  libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
  libdevel-globaldestruction-perl libdevel-overloadinfo-perl
  libdevel-stacktrace-perl libdist-checkconflicts-perl
  libdynaloader-functions-perl libelf1 libencode-locale-perl
  libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
  libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev
  libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
  libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67
  libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
  libmagic1 libmd0 libmodule-implementation-perl
  libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
  libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
  libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
  libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
  libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
  libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
  libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
  libreadline-dev librtmp1 libscalar-list-utils-perl libsigsegv2 libsm6
  libssh2-1 libstdc++-10-dev libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
  libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
  libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl
  libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
  libxss1 libxt6 littler m4 man-db openssl pkg-config po-debconf r-base-core
  r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase
  r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-edger
  r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges
  r-bioc-keggrest r-bioc-limma r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc
  r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob
  r-cran-cachem r-cran-crayon r-cran-curl r-cran-dbi r-cran-ellipsis
  r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options
  r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lambda.r r-cran-lattice
  r-cran-littler r-cran-locfit r-cran-matrix r-cran-matrixstats r-cran-memoise
  r-cran-mgcv r-cran-mime r-cran-nlme r-cran-openssl r-cran-pkgconfig
  r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-r6 r-cran-rcpp r-cran-rcurl
  r-cran-rlang r-cran-rsqlite r-cran-snow r-cran-survival r-cran-sys
  r-cran-vctrs r-cran-xml r-cran-xtable sbuild-build-depends-main-dummy ucf
  unzip x11-common xauth xdg-utils zip zlib1g-dev
0 upgraded, 234 newly installed, 0 to remove and 0 not upgraded.
Need to get 213 MB of archives.
After this operation, 644 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-4 [135 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.4-1 [31.6 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf gcc-10-base armhf 10.3.0-12+rpi1 [206 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 1.1.1l-1 [815 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.1-1 [26.5 kB]
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Get:31 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
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Get:34 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-26 [151 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-1 [108 kB]
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Get:47 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.79.1-2 [320 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.1-1 [1210 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-10+rpi1 [234 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-1 [1594 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.28-4.1 [171 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2 [39.7 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.28-4.1 [51.4 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.48.10+ds1-1 [184 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.48.10+ds1-1 [66.6 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.48.10+ds1-1 [56.8 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.8-1 [44.1 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-2 [272 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.1.2-1 [25.4 MB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-11-dev armhf 11.2.0-10+rpi1 [280 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf gfortran-11 armhf 11.2.0-10+rpi1 [43.8 MB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:11.2.0-2+rpi1 [1428 B]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.0-1 [113 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.0-1 [2872 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3-1 [79.8 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3-1 [290 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3-1 [932 B]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.1-2 [121 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.39-3 [200 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.39-3 [190 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.39-3 [51.8 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.39-3 [629 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2 [219 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1-1 [36.6 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.1.2-1 [4484 B]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-2.1 [20.0 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-2 [16.1 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.10-1 [91.0 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.35-1 [80.5 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-1 [24.2 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libscalar-list-utils-perl armhf 1:1.59-1 [60.8 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.39-1 [21.9 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b4 [14.3 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.13-1 [12.2 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.5 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2200-1 [803 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.25-1 [19.5 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.79.1-2 [317 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-7+b1 [58.9 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libgcc-10-dev armhf 10.3.0-12+rpi1 [679 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-10-dev armhf 10.3.0-12+rpi1 [1758 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-13 [9537 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b2 [4824 B]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf r-cran-littler armhf 0.3.14-1 [95.1 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf littler all 0.3.14-1 [16.6 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.40.0-1 [587 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biobase armhf 2.54.0-1 [2216 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-s4vectors armhf 0.32.3-1 [2066 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-iranges armhf 2.28.0-1 [2218 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dbi all 1.1.1-1 [619 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bit armhf 4.0.4+dfsg-1 [418 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rlang armhf 0.4.12-2 [1185 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ellipsis armhf 0.3.2-2 [35.1 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf r-cran-glue armhf 1.5.0-1 [145 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf r-cran-vctrs armhf 0.3.8-2 [1099 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf r-cran-blob all 1.2.2-1 [50.0 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fastmap armhf 1.1.0-1 [63.1 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cachem armhf 1.0.6-1 [70.5 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf r-cran-memoise all 2.0.1-1 [53.8 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcpp armhf 1.0.7-2 [1997 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf r-cran-plogr all 0.2.0-3 [14.9 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rsqlite armhf 2.2.8-1 [949 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf r-cran-curl armhf 4.3.2+dfsg-1 [153 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf r-cran-jsonlite armhf 1.7.2+dfsg-1 [442 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mime armhf 0.12-1 [35.6 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sys armhf 3.4-1 [42.7 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf r-cran-askpass armhf 1.1-2 [22.3 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf r-cran-openssl armhf 1.4.5+dfsg-1 [373 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf r-cran-httr all 1.4.2-1 [478 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf r-cran-png armhf 0.1-7-4 [39.9 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-zlibbioc all 1.40.0+dfsg-1 [9040 B]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-xvector armhf 0.34.0-1 [605 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcurl armhf 1.98-1.5-1 [800 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodbdata all 1.2.7-1 [11.2 MB]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodb all 1.30.0-1 [3914 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf r-cran-crayon all 1.4.2-1 [158 kB]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biostrings armhf 2.62.0-1 [14.2 MB]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-keggrest all 1.34.0+dfsg-1 [179 kB]
Get:214 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-annotationdbi all 1.56.2-1 [4686 kB]
Get:215 http://172.17.4.1/private bookworm-staging/main armhf r-cran-xml armhf 3.99-0.8-1 [1720 kB]
Get:216 http://172.17.4.1/private bookworm-staging/main armhf r-cran-xtable all 1:1.8-4-2 [689 kB]
Get:217 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-annotate all 1.72.0+dfsg-1 [1976 kB]
Get:218 http://172.17.4.1/private bookworm-staging/main armhf r-cran-formatr all 1.11-1 [147 kB]
Get:219 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:220 http://172.17.4.1/private bookworm-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:221 http://172.17.4.1/private bookworm-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:222 http://172.17.4.1/private bookworm-staging/main armhf r-cran-snow all 1:0.4.4-1 [99.0 kB]
Get:223 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bh all 1.74.0-2 [5524 B]
Get:224 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocparallel armhf 1.28.2-2 [1362 kB]
Get:225 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-limma armhf 3.50.0+dfsg-1 [1773 kB]
Get:226 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-45-1 [1176 kB]
Get:227 http://172.17.4.1/private bookworm-staging/main armhf r-cran-locfit armhf 1.5-9.4-2+b1 [485 kB]
Get:228 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-edger armhf 3.36.0+dfsg-1 [1097 kB]
Get:229 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.3-4-2 [3573 kB]
Get:230 http://172.17.4.1/private bookworm-staging/main armhf r-cran-survival armhf 3.2-13-1 [6598 kB]
Get:231 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genefilter armhf 1.76.0-1 [1168 kB]
Get:232 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrixstats armhf 0.61.0-1 [451 kB]
Get:233 http://172.17.4.1/private bookworm-staging/main armhf r-cran-nlme armhf 3.1.153-1 [2266 kB]
Get:234 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mgcv armhf 1.8-38-1 [2982 kB]
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Unpacking r-bioc-genefilter (1.76.0-1) ...
Selecting previously unselected package r-cran-matrixstats.
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Unpacking r-cran-matrixstats (0.61.0-1) ...
Selecting previously unselected package r-cran-nlme.
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Unpacking r-cran-nlme (3.1.153-1) ...
Selecting previously unselected package r-cran-mgcv.
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Unpacking r-cran-mgcv (1.8-38-1) ...
Selecting previously unselected package sbuild-build-depends-main-dummy.
Preparing to unpack .../233-sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.4.1-3) ...
Setting up libpcrecpp0v5:armhf (2:8.39-13) ...
Setting up libpipeline1:armhf (1.5.4-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up libpixman-1-0:armhf (0.40.0-1) ...
Setting up libfile-which-perl (1.23-1) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up bsdextrautils (2.37.2-4) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libpcre16-3:armhf (2:8.39-13) ...
Setting up libicu67:armhf (67.1-7) ...
Setting up libdynaloader-functions-perl (0.003-1.1) ...
Setting up libdatrie1:armhf (0.2.13-2) ...
Setting up libmagic-mgc (1:5.41-2) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-1+b3) ...
Setting up libglib2.0-0:armhf (2.70.1-1) ...
No schema files found: doing nothing.
Setting up libscalar-list-utils-perl (1:1.59-1) ...
Setting up unzip (6.0-26) ...
Setting up libdebhelper-perl (13.5.2) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up liblwp-mediatypes-perl (6.04-1) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libtry-tiny-perl (0.31-1) ...
Setting up libnghttp2-14:armhf (1.43.0-1) ...
Setting up libmagic1:armhf (1:5.41-2) ...
Setting up libdeflate0:armhf (1.8-1) ...
Setting up gettext-base (0.21-4) ...
Setting up libencode-locale-perl (1.05-1.1) ...
Setting up file (1:5.41-2) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libpcre2-16-0:armhf (10.39-3) ...
Setting up libsub-install-perl (0.928-1.1) ...
Setting up gcc-10-base:armhf (10.3.0-12+rpi1) ...
Setting up zip (3.0-12) ...
Setting up libpackage-stash-xs-perl (0.29-1+b2) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libpcre2-32-0:armhf (10.39-3) ...
Setting up libblas3:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libalgorithm-c3-perl (0.11-1) ...
Setting up libjpeg62-turbo:armhf (1:2.1.2-1) ...
Setting up libswitch-perl (2.17-2.1) ...
Setting up libx11-data (2:1.7.2-2) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.1.2-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.3-1) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up libfribidi0:armhf (1.0.8-2) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up libpcre32-3:armhf (2:8.39-13) ...
Setting up libvariable-magic-perl (0.62-1+b3) ...
Setting up libio-html-perl (1.004-2) ...
Setting up libtcl8.6:armhf (8.6.12+dfsg-1) ...
Setting up autopoint (0.21-4) ...
Setting up libwebp6:armhf (0.6.1-2.1) ...
Setting up libb-hooks-op-check-perl (0.22-1+b4) ...
Setting up icu-devtools (67.1-7) ...
Setting up pkg-config (0.29.2-1) ...
Setting up fonts-dejavu-core (2.37-2) ...
Setting up ucf (3.0043) ...
Setting up libparams-util-perl (1.102-1+b1) ...
Setting up libgfortran5:armhf (11.2.0-10+rpi1) ...
Setting up libsub-exporter-progressive-perl (0.001013-1) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up liblzma-dev:armhf (5.2.5-2) ...
Setting up libsub-name-perl (0.26-1+b1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libpcre2-posix3:armhf (10.39-3) ...
Setting up libmd0:armhf (1.0.4-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libthai-data (0.1.28-4.1) ...
Setting up libdevel-globaldestruction-perl (0.14-1.1) ...
Setting up libssh2-1:armhf (1.10.0-2) ...
Setting up libdevel-stacktrace-perl (2.0400-1) ...
Setting up libtiff5:armhf (4.3.0-2) ...
Setting up openssl (1.1.1l-1) ...
Setting up libbsd0:armhf (0.11.3-1) ...
Setting up libelf1:armhf (0.186-1) ...
Setting up libicu-dev:armhf (67.1-7) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up liburi-perl (5.10-1) ...
Setting up libblas-dev:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-4) ...
Setting up libfile-stripnondeterminism-perl (1.12.1-1) ...
Setting up libpaper1:armhf (1.1.28) ...

Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.3-1) ...
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
Setting up libpcre2-dev:armhf (10.39-3) ...
Setting up libtool (2.4.6-15) ...
Setting up libxcb-render0:armhf (1.14-3) ...
Setting up libpcre3-dev:armhf (2:8.39-13) ...
Setting up libgfortran-11-dev:armhf (11.2.0-10+rpi1) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up libgcc-10-dev:armhf (10.3.0-12+rpi1) ...
Setting up libpng-dev:armhf (1.6.37-3) ...
Setting up libjpeg-dev:armhf (1:2.1.2-1) ...
Setting up m4 (1.4.18-5) ...
Setting up libcurl3-gnutls:armhf (7.79.1-2) ...
Setting up libxcb-shm0:armhf (1.14-3) ...
Setting up libpaper-utils (1.1.28) ...
Setting up libclass-c3-perl (0.35-1) ...
Setting up libreadline-dev:armhf (8.1-2) ...
Setting up libdevel-callchecker-perl (0.008-1+b2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libthai0:armhf (0.1.28-4.1) ...
Setting up ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
129 added, 0 removed; done.
Setting up libfreetype6:armhf (2.11.0+dfsg-1) ...
Setting up liblapack-dev:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.112-1) ...
Setting up gfortran-11 (11.2.0-10+rpi1) ...
Setting up autoconf (2.71-2) ...
Setting up dh-strip-nondeterminism (1.12.1-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-7) ...
Setting up libncurses5-dev:armhf (6.3-1) ...
Setting up libcurl4:armhf (7.79.1-2) ...
Setting up libx11-6:armhf (2:1.7.2-2) ...
Setting up libharfbuzz0b:armhf (2.7.4-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up libmro-compat-perl (0.13-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2+b3) ...
Setting up libsub-exporter-perl (0.988-1) ...
Setting up libhttp-message-perl (6.35-1) ...
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Setting up automake (1:1.16.5-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libstdc++-10-dev:armhf (10.3.0-12+rpi1) ...
Setting up libboost1.74-dev:armhf (1.74.0-13) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
Setting up libpango-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl (4.17-7+b1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:11.2.0-2+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up dh-autoreconf (20) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up libdist-checkconflicts-perl (0.11-1.1) ...
Setting up libxt6:armhf (1:1.2.0-1) ...
Setting up xauth (1:1.1-1) ...
Setting up libboost-dev:armhf (1.74.0.3+b2) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libpangoft2-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libpangocairo-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up r-cran-bh (1.74.0-2) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up libmodule-implementation-perl (0.09-1.1) ...
Setting up libpackage-stash-perl (0.39-1) ...
Setting up libtk8.6:armhf (8.6.12-1) ...
Setting up debhelper (13.5.2) ...
Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up r-base-core (4.1.2-1) ...

Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.4.2-1) ...
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.20-45-1) ...
Setting up r-cran-nlme (3.1.153-1) ...
Setting up r-cran-formatr (1.11-1) ...
Setting up r-cran-xml (3.99-0.8-1) ...
Setting up libpackage-deprecationmanager-perl (0.17-1.1) ...
Setting up r-cran-locfit (1.5-9.4-2+b1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-1+b4) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.2-2) ...
Setting up libb-hooks-endofscope-perl (0.25-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.7-1) ...
Setting up r-cran-littler (0.3.14-1) ...
Setting up r-cran-rcpp (1.0.7-2) ...
Setting up r-cran-curl (4.3.2+dfsg-1) ...
Setting up r-bioc-biocgenerics (0.40.0-1) ...
Setting up r-cran-rlang (0.4.12-2) ...
Setting up r-cran-matrixstats (0.61.0-1) ...
Setting up r-base-dev (4.1.2-1) ...
Setting up littler (0.3.14-1) ...
Setting up r-cran-sys (3.4-1) ...
Setting up r-cran-plogr (0.2.0-3) ...
Setting up r-cran-mime (0.12-1) ...
Setting up libmoose-perl:armhf (2.2200-1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-dbi (1.1.1-1) ...
Setting up r-cran-snow (1:0.4.4-1) ...
Setting up r-cran-glue (1.5.0-1) ...
Setting up r-cran-bit (4.0.4+dfsg-1) ...
Setting up r-cran-xtable (1:1.8-4-2) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-cran-bit64 (4.0.5-1) ...
Setting up r-bioc-zlibbioc (1.40.0+dfsg-1) ...
Setting up r-cran-askpass (1.1-2) ...
Setting up r-cran-fastmap (1.1.0-1) ...
Setting up r-cran-png (0.1-7-4) ...
Setting up r-bioc-biobase (2.54.0-1) ...
Setting up r-cran-jsonlite (1.7.2+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-bioc-s4vectors (0.32.3-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up r-bioc-limma (3.50.0+dfsg-1) ...
Setting up r-cran-matrix (1.3-4-2) ...
Setting up r-cran-mgcv (1.8-38-1) ...
Setting up r-cran-cachem (1.0.6-1) ...
Setting up r-bioc-iranges (2.28.0-1) ...
Setting up r-cran-rcurl (1.98-1.5-1) ...
Setting up r-cran-ellipsis (0.3.2-2) ...
Setting up r-cran-openssl (1.4.5+dfsg-1) ...
Setting up r-bioc-biocparallel (1.28.2-2) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up r-bioc-edger (3.36.0+dfsg-1) ...
Setting up r-cran-survival (3.2-13-1) ...
Setting up r-bioc-genomeinfodb (1.30.0-1) ...
Setting up r-cran-httr (1.4.2-1) ...
Setting up r-cran-memoise (2.0.1-1) ...
Setting up r-bioc-xvector (0.34.0-1) ...
Setting up dh-r (20210816) ...
Setting up r-cran-vctrs (0.3.8-2) ...
Setting up r-bioc-biostrings (2.62.0-1) ...
Setting up r-cran-blob (1.2.2-1) ...
Setting up r-cran-rsqlite (2.2.8-1) ...
Setting up r-bioc-keggrest (1.34.0+dfsg-1) ...
Setting up r-bioc-annotationdbi (1.56.2-1) ...
Setting up r-bioc-annotate (1.72.0+dfsg-1) ...
Setting up r-bioc-genefilter (1.76.0-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.37-7+rpi1 dpkg-dev_1.20.9+rpi1 g++-11_11.2.0-10+rpi1 gcc-11_11.2.0-10+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-12+rpi1 libstdc++-11-dev_11.2.0-10+rpi1 libstdc++6_11.2.0-10+rpi1 linux-libc-dev_5.14.16-1+rpi1
Package versions: adduser_3.118 apt_2.3.13 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-5 binutils_2.37-7+rpi1 binutils-arm-linux-gnueabihf_2.37-7+rpi1 binutils-common_2.37-7+rpi1 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-10+rpi1 dash_0.5.11+git20210903+057cd650a4ed-3 dctrl-tools_2.24-3 debconf_1.5.79 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.12.1-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.41-2 findutils_4.8.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-10+rpi1 gcc_4:11.2.0-2+rpi1 gcc-10-base_10.3.0-12+rpi1 gcc-11_11.2.0-10+rpi1 gcc-11-base_11.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 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libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcairo2_1.16.0-5 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10+rpi1 libclass-c3-perl_0.35-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-1+b4 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.26-1 libcrypt1_1:4.4.26-1 libctf-nobfd0_2.37-7+rpi1 libctf0_2.37-7+rpi1 libcurl3-gnutls_7.79.1-2 libcurl4_7.79.1-2 libdata-optlist-perl_0.112-1 libdatrie1_0.2.13-2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.5.2 libdeflate0_1.8-1 libdevel-callchecker-perl_0.008-1+b2 libdevel-globaldestruction-perl_0.14-1.1 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-1 libdist-checkconflicts-perl_0.11-1.1 libdpkg-perl_1.20.9+rpi1 libdynaloader-functions-perl_0.003-1.1 libelf1_0.186-1 libencode-locale-perl_1.05-1.1 libeval-closure-perl_0.14-1 libexpat1_2.4.1-3 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.12.1-1 libfile-which-perl_1.23-1 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r-cran-curl_4.3.2+dfsg-1 r-cran-dbi_1.1.1-1 r-cran-ellipsis_0.3.2-2 r-cran-fastmap_1.1.0-1 r-cran-formatr_1.11-1 r-cran-futile.logger_1.4.3-4 r-cran-futile.options_1.0.1-3 r-cran-glue_1.5.0-1 r-cran-httr_1.4.2-1 r-cran-jsonlite_1.7.2+dfsg-1 r-cran-lambda.r_1.2.4-2 r-cran-lattice_0.20-45-1 r-cran-littler_0.3.14-1 r-cran-locfit_1.5-9.4-2+b1 r-cran-matrix_1.3-4-2 r-cran-matrixstats_0.61.0-1 r-cran-memoise_2.0.1-1 r-cran-mgcv_1.8-38-1 r-cran-mime_0.12-1 r-cran-nlme_3.1.153-1 r-cran-openssl_1.4.5+dfsg-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.2-2 r-cran-plogr_0.2.0-3 r-cran-png_0.1-7-4 r-cran-r6_2.5.1-1 r-cran-rcpp_1.0.7-2 r-cran-rcurl_1.98-1.5-1 r-cran-rlang_0.4.12-2 r-cran-rsqlite_2.2.8-1 r-cran-snow_1:0.4.4-1 r-cran-survival_3.2-13-1 r-cran-sys_3.4-1 r-cran-vctrs_0.3.8-2 r-cran-xml_3.99-0.8-1 r-cran-xtable_1:1.8-4-2 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 unzip_6.0-26 util-linux_2.37.2-4 x11-common_1:7.7+23 xauth_1:1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2 zip_3.0-12 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: r-bioc-sva
Binary: r-bioc-sva
Architecture: any
Version: 3.42.0-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://bioconductor.org/packages/sva/
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-sva
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-sva.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-mgcv, r-bioc-genefilter, r-bioc-biocparallel, r-cran-matrixstats, r-bioc-limma, r-bioc-edger
Package-List:
 r-bioc-sva deb gnu-r optional arch=any
Checksums-Sha1:
 3349a0a2da8daa7cd90e64d1e49c145e31e4332b 441117 r-bioc-sva_3.42.0.orig.tar.gz
 a998caac3e3d0a381a6427427ab2ead952011eb0 5796 r-bioc-sva_3.42.0-1.debian.tar.xz
Checksums-Sha256:
 b2d5b33a2709e54de9c493a554180dd2c63145181ddbbd0a7b0e8bd8528b9f32 441117 r-bioc-sva_3.42.0.orig.tar.gz
 cfc2672b497802d87be1a96f5d49aa42995770747b1db94cdeb6ed13ea416196 5796 r-bioc-sva_3.42.0-1.debian.tar.xz
Files:
 5b0dd7fc19954658e0492110f3185c4a 441117 r-bioc-sva_3.42.0.orig.tar.gz
 17dcd54abb09d19d541c3ed9b9a79aac 5796 r-bioc-sva_3.42.0-1.debian.tar.xz

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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.pPBGsLAI/trustedkeys.kbx': General error
gpgv: Signature made Fri Nov 26 07:23:31 2021 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-sva_3.42.0-1.dsc
dpkg-source: info: extracting r-bioc-sva in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-sva_3.42.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-sva_3.42.0-1.debian.tar.xz

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=1b2d35e96e094e0c905e1f5e00ab4580
JOURNAL_STREAM=8:29072680
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-4ec9abcc-ea0e-4e21-b6f8-3ae7ce4903ef
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c163289
XDG_SESSION_TYPE=unspecified

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-bioc-sva
dpkg-buildpackage: info: source version 3.42.0-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules binary-arch
dh binary-arch --buildsystem R
   dh_update_autotools_config -a -O--buildsystem=R
   dh_autoreconf -a -O--buildsystem=R
   dh_auto_configure -a -O--buildsystem=R
   dh_auto_build -a -O--buildsystem=R
   dh_auto_test -a -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=R
   dh_prep -a -O--buildsystem=R
   dh_auto_install --destdir=debian/r-bioc-sva/ -a -O--buildsystem=R
I: R Package: sva Version: 3.42.0
I: Building using R version 4.1.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Fri, 26 Nov 2021 08:18:45 +0100
	mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-sva/usr/lib/R/site-library
	R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-sva/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 26 Nov 2021 08:18:45 +0100'"
* installing *source* package ‘sva’ ...
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-4lrxNK/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c sva.c -o sva.o
gcc -std=gnu99 -std=gnu11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o sva.so sva.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-sva/usr/lib/R/site-library/00LOCK-r-bioc-sva-3.42.0/00new/sva/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sva)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 303.
W: Ignoring specified R dependency: R (>= 3.2)
I: Using r-cran-mgcv for Depends:mgcv
I: Using r-bioc-genefilter for Depends:genefilter
I: Using r-bioc-biocparallel for Depends:BiocParallel
W: Cannot find a debian package for Suggests:pamr
I: Using r-bioc-bladderbatch for Suggests:bladderbatch
I: Using r-bioc-biocstyle for Suggests:BiocStyle
W: Cannot find a debian package for Suggests:zebrafishRNASeq
I: Using r-cran-testthat for Suggests:testthat
I: Using r-cran-matrixstats for Imports:matrixStats
I: Using r-bioc-limma for Imports:limma
I: Using r-bioc-edger for Imports:edgeR
I: BioConductor API version: r-api-bioc-3.14
I: Use r-bioc-sva as Debian binary package for variables substitution
   dh_installdocs -a -O--buildsystem=R
   dh_installchangelogs -a -O--buildsystem=R
   dh_installsystemduser -a -O--buildsystem=R
   dh_lintian -a -O--buildsystem=R
   dh_perl -a -O--buildsystem=R
   dh_link -a -O--buildsystem=R
   dh_strip_nondeterminism -a -O--buildsystem=R
   dh_compress -a -O--buildsystem=R
   dh_fixperms -a -O--buildsystem=R
   dh_missing -a -O--buildsystem=R
   dh_dwz -a -O--buildsystem=R
   dh_strip -a -O--buildsystem=R
   dh_makeshlibs -a -O--buildsystem=R
   dh_shlibdeps -a -O--buildsystem=R
   dh_installdeb -a -O--buildsystem=R
   dh_gencontrol -a -O--buildsystem=R
dpkg-gencontrol: warning: Depends field of package r-bioc-sva: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package r-bioc-sva: substitution variable ${shlibs:Depends} used, but is not defined
   dh_md5sums -a -O--buildsystem=R
   dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-sva' in '../r-bioc-sva_3.42.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-sva-dbgsym' in '../r-bioc-sva-dbgsym_3.42.0-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> >../r-bioc-sva_3.42.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-12-04T06:22:02Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-bioc-sva_3.42.0-1_armhf.changes:
----------------------------------

Format: 1.8
Date: Fri, 26 Nov 2021 08:18:45 +0100
Source: r-bioc-sva
Binary: r-bioc-sva r-bioc-sva-dbgsym
Architecture: armhf
Version: 3.42.0-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 r-bioc-sva - GNU R Surrogate Variable Analysis
Changes:
 r-bioc-sva (3.42.0-1) unstable; urgency=medium
 .
   * Disable reprotest
   * New upstream version
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Files:
 eeed8d1fe948be269d92baed50f468a5 4000 debug optional r-bioc-sva-dbgsym_3.42.0-1_armhf.deb
 b3a5b1997082c34883812296bd980f0c 11445 gnu-r optional r-bioc-sva_3.42.0-1_armhf.buildinfo
 03c60bb3e097e8fe27a244abe049004c 441848 gnu-r optional r-bioc-sva_3.42.0-1_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: r-bioc-sva
Binary: r-bioc-sva r-bioc-sva-dbgsym
Architecture: armhf
Version: 3.42.0-1
Checksums-Md5:
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Checksums-Sha256:
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sat, 04 Dec 2021 06:22:01 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
 autoconf (= 2.71-2),
 automake (= 1:1.16.5-1.1),
 autopoint (= 0.21-4),
 autotools-dev (= 20180224.1+nmu1),
 base-files (= 12+rpi1),
 base-passwd (= 3.5.52),
 bash (= 5.1-5),
 binutils (= 2.37-7+rpi1),
 binutils-arm-linux-gnueabihf (= 2.37-7+rpi1),
 binutils-common (= 2.37-7+rpi1),
 bsdextrautils (= 2.37.2-4),
 bsdutils (= 1:2.37.2-4),
 build-essential (= 12.9),
 bzip2 (= 1.0.8-4),
 ca-certificates (= 20210119),
 coreutils (= 8.32-4.1),
 cpp (= 4:11.2.0-2+rpi1),
 cpp-11 (= 11.2.0-10+rpi1),
 dash (= 0.5.11+git20210903+057cd650a4ed-3),
 dctrl-tools (= 2.24-3),
 debconf (= 1.5.79),
 debhelper (= 13.5.2),
 debianutils (= 4.11.2),
 dh-autoreconf (= 20),
 dh-r (= 20210816),
 dh-strip-nondeterminism (= 1.12.1-1),
 diffutils (= 1:3.7-5),
 dpkg (= 1.20.9+rpi1),
 dpkg-dev (= 1.20.9+rpi1),
 dwz (= 0.14-1),
 file (= 1:5.41-2),
 findutils (= 4.8.0-1),
 fontconfig (= 2.13.1-4.2),
 fontconfig-config (= 2.13.1-4.2),
 fonts-dejavu-core (= 2.37-2),
 g++ (= 4:11.2.0-2+rpi1),
 g++-11 (= 11.2.0-10+rpi1),
 gcc (= 4:11.2.0-2+rpi1),
 gcc-10-base (= 10.3.0-12+rpi1),
 gcc-11 (= 11.2.0-10+rpi1),
 gcc-11-base (= 11.2.0-10+rpi1),
 gettext (= 0.21-4),
 gettext-base (= 0.21-4),
 gfortran (= 4:11.2.0-2+rpi1),
 gfortran-11 (= 11.2.0-10+rpi1),
 grep (= 3.7-1),
 groff-base (= 1.22.4-7),
 gzip (= 1.10-4),
 hostname (= 3.23),
 icu-devtools (= 67.1-7),
 init-system-helpers (= 1.60),
 intltool-debian (= 0.35.0+20060710.5),
 libacl1 (= 2.3.1-1),
 libalgorithm-c3-perl (= 0.11-1),
 libarchive-zip-perl (= 1.68-1),
 libasan6 (= 11.2.0-10+rpi1),
 libatomic1 (= 11.2.0-10+rpi1),
 libattr1 (= 1:2.5.1-1),
 libaudit-common (= 1:3.0.6-1),
 libaudit1 (= 1:3.0.6-1),
 libb-hooks-endofscope-perl (= 0.25-1),
 libb-hooks-op-check-perl (= 0.22-1+b4),
 libbinutils (= 2.37-7+rpi1),
 libblas-dev (= 3.10.0-1),
 libblas3 (= 3.10.0-1),
 libblkid1 (= 2.37.2-4),
 libboost-dev (= 1.74.0.3+b2),
 libboost1.74-dev (= 1.74.0-13),
 libbrotli1 (= 1.0.9-2+b1),
 libbsd0 (= 0.11.3-1),
 libbz2-1.0 (= 1.0.8-4),
 libbz2-dev (= 1.0.8-4),
 libc-bin (= 2.32-4+rpi1),
 libc-dev-bin (= 2.32-4+rpi1),
 libc6 (= 2.32-4+rpi1),
 libc6-dev (= 2.32-4+rpi1),
 libcairo2 (= 1.16.0-5),
 libcap-ng0 (= 0.7.9-2.2+b1),
 libcap2 (= 1:2.44-1),
 libcc1-0 (= 11.2.0-10+rpi1),
 libclass-c3-perl (= 0.35-1),
 libclass-load-perl (= 0.25-1),
 libclass-load-xs-perl (= 0.10-1+b4),
 libcom-err2 (= 1.46.4-1),
 libcrypt-dev (= 1:4.4.26-1),
 libcrypt1 (= 1:4.4.26-1),
 libctf-nobfd0 (= 2.37-7+rpi1),
 libctf0 (= 2.37-7+rpi1),
 libcurl3-gnutls (= 7.79.1-2),
 libcurl4 (= 7.79.1-2),
 libdata-optlist-perl (= 0.112-1),
 libdatrie1 (= 0.2.13-2),
 libdb5.3 (= 5.3.28+dfsg1-0.8),
 libdebconfclient0 (= 0.261),
 libdebhelper-perl (= 13.5.2),
 libdeflate0 (= 1.8-1),
 libdevel-callchecker-perl (= 0.008-1+b2),
 libdevel-globaldestruction-perl (= 0.14-1.1),
 libdevel-overloadinfo-perl (= 0.007-1),
 libdevel-stacktrace-perl (= 2.0400-1),
 libdist-checkconflicts-perl (= 0.11-1.1),
 libdpkg-perl (= 1.20.9+rpi1),
 libdynaloader-functions-perl (= 0.003-1.1),
 libelf1 (= 0.186-1),
 libencode-locale-perl (= 1.05-1.1),
 libeval-closure-perl (= 0.14-1),
 libexpat1 (= 2.4.1-3),
 libffi8 (= 3.4.2-3),
 libfile-stripnondeterminism-perl (= 1.12.1-1),
 libfile-which-perl (= 1.23-1),
 libfontconfig1 (= 2.13.1-4.2),
 libfreetype6 (= 2.11.0+dfsg-1),
 libfribidi0 (= 1.0.8-2),
 libgcc-10-dev (= 10.3.0-12+rpi1),
 libgcc-11-dev (= 11.2.0-10+rpi1),
 libgcc-s1 (= 11.2.0-10+rpi1),
 libgcrypt20 (= 1.9.4-3),
 libgdbm-compat4 (= 1.22-1),
 libgdbm6 (= 1.22-1),
 libgfortran-11-dev (= 11.2.0-10+rpi1),
 libgfortran5 (= 11.2.0-10+rpi1),
 libglib2.0-0 (= 2.70.1-1),
 libgmp10 (= 2:6.2.1+dfsg-3),
 libgnutls30 (= 3.7.2-2),
 libgomp1 (= 11.2.0-10+rpi1),
 libgpg-error0 (= 1.42-3),
 libgraphite2-3 (= 1.3.14-1),
 libgssapi-krb5-2 (= 1.18.3-7),
 libharfbuzz0b (= 2.7.4-1),
 libhogweed6 (= 3.7.3-1),
 libhttp-date-perl (= 6.05-1),
 libhttp-message-perl (= 6.35-1),
 libice6 (= 2:1.0.10-1),
 libicu-dev (= 67.1-7),
 libicu67 (= 67.1-7),
 libidn2-0 (= 2.3.2-2),
 libio-html-perl (= 1.004-2),
 libisl23 (= 0.24-2),
 libjbig0 (= 2.1-3.1+b2),
 libjpeg-dev (= 1:2.1.2-1),
 libjpeg62-turbo (= 1:2.1.2-1),
 libjpeg62-turbo-dev (= 1:2.1.2-1),
 libk5crypto3 (= 1.18.3-7),
 libkeyutils1 (= 1.6.1-2),
 libkrb5-3 (= 1.18.3-7),
 libkrb5support0 (= 1.18.3-7),
 liblapack-dev (= 3.10.0-1),
 liblapack3 (= 3.10.0-1),
 libldap-2.4-2 (= 2.4.59+dfsg-1),
 liblwp-mediatypes-perl (= 6.04-1),
 liblz4-1 (= 1.9.3-2),
 liblzma-dev (= 5.2.5-2),
 liblzma5 (= 5.2.5-2),
 libmagic-mgc (= 1:5.41-2),
 libmagic1 (= 1:5.41-2),
 libmd0 (= 1.0.4-1),
 libmodule-implementation-perl (= 0.09-1.1),
 libmodule-runtime-conflicts-perl (= 0.003-1.1),
 libmodule-runtime-perl (= 0.016-1),
 libmoose-perl (= 2.2200-1),
 libmount1 (= 2.37.2-4),
 libmpc3 (= 1.2.1-1),
 libmpfr6 (= 4.1.0-3),
 libmro-compat-perl (= 0.13-1),
 libnamespace-clean-perl (= 0.27-1),
 libncurses-dev (= 6.3-1),
 libncurses5-dev (= 6.3-1),
 libncurses6 (= 6.3-1),
 libncursesw6 (= 6.3-1),
 libnettle8 (= 3.7.3-1),
 libnghttp2-14 (= 1.43.0-1),
 libnsl-dev (= 1.3.0-2),
 libnsl2 (= 1.3.0-2),
 libp11-kit0 (= 0.24.0-5),
 libpackage-deprecationmanager-perl (= 0.17-1.1),
 libpackage-stash-perl (= 0.39-1),
 libpackage-stash-xs-perl (= 0.29-1+b2),
 libpam-modules (= 1.4.0-10),
 libpam-modules-bin (= 1.4.0-10),
 libpam-runtime (= 1.4.0-10),
 libpam0g (= 1.4.0-10),
 libpango-1.0-0 (= 1.48.10+ds1-1),
 libpangocairo-1.0-0 (= 1.48.10+ds1-1),
 libpangoft2-1.0-0 (= 1.48.10+ds1-1),
 libpaper-utils (= 1.1.28),
 libpaper1 (= 1.1.28),
 libparams-classify-perl (= 0.015-1+b3),
 libparams-util-perl (= 1.102-1+b1),
 libpcre16-3 (= 2:8.39-13),
 libpcre2-16-0 (= 10.39-3),
 libpcre2-32-0 (= 10.39-3),
 libpcre2-8-0 (= 10.39-3),
 libpcre2-dev (= 10.39-3),
 libpcre2-posix3 (= 10.39-3),
 libpcre3 (= 2:8.39-13),
 libpcre3-dev (= 2:8.39-13),
 libpcre32-3 (= 2:8.39-13),
 libpcrecpp0v5 (= 2:8.39-13),
 libperl5.32 (= 5.32.1-6),
 libpipeline1 (= 1.5.4-1),
 libpixman-1-0 (= 0.40.0-1),
 libpng-dev (= 1.6.37-3),
 libpng16-16 (= 1.6.37-3),
 libpsl5 (= 0.21.0-1.2),
 libreadline-dev (= 8.1-2),
 libreadline8 (= 8.1-2),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
 libsasl2-2 (= 2.1.27+dfsg2-2),
 libsasl2-modules-db (= 2.1.27+dfsg2-2),
 libscalar-list-utils-perl (= 1:1.59-1),
 libseccomp2 (= 2.5.3-2+rpi1),
 libselinux1 (= 3.3-1),
 libsigsegv2 (= 2.13-1),
 libsm6 (= 2:1.2.3-1),
 libsmartcols1 (= 2.37.2-4),
 libssh2-1 (= 1.10.0-2),
 libssl1.1 (= 1.1.1l-1),
 libstdc++-10-dev (= 10.3.0-12+rpi1),
 libstdc++-11-dev (= 11.2.0-10+rpi1),
 libstdc++6 (= 11.2.0-10+rpi1),
 libsub-exporter-perl (= 0.988-1),
 libsub-exporter-progressive-perl (= 0.001013-1),
 libsub-identify-perl (= 0.14-1+b3),
 libsub-install-perl (= 0.928-1.1),
 libsub-name-perl (= 0.26-1+b1),
 libsub-override-perl (= 0.09-2),
 libswitch-perl (= 2.17-2.1),
 libsystemd0 (= 249.7-1+rpi1),
 libtasn1-6 (= 4.18.0-4),
 libtcl8.6 (= 8.6.12+dfsg-1),
 libthai-data (= 0.1.28-4.1),
 libthai0 (= 0.1.28-4.1),
 libtiff5 (= 4.3.0-2),
 libtimedate-perl (= 2.3300-2),
 libtinfo6 (= 6.3-1),
 libtirpc-common (= 1.3.2-2),
 libtirpc-dev (= 1.3.2-2),
 libtirpc3 (= 1.3.2-2),
 libtk8.6 (= 8.6.12-1),
 libtool (= 2.4.6-15),
 libtry-tiny-perl (= 0.31-1),
 libubsan1 (= 11.2.0-10+rpi1),
 libuchardet0 (= 0.0.7-1),
 libudev1 (= 249.7-1+rpi1),
 libunistring2 (= 0.9.10-6),
 liburi-perl (= 5.10-1),
 libuuid1 (= 2.37.2-4),
 libvariable-magic-perl (= 0.62-1+b3),
 libwebp6 (= 0.6.1-2.1),
 libwww-curl-perl (= 4.17-7+b1),
 libwww-curl-simple-perl (= 0.100191-2),
 libx11-6 (= 2:1.7.2-2),
 libx11-data (= 2:1.7.2-2),
 libxau6 (= 1:1.0.9-1),
 libxcb-render0 (= 1.14-3),
 libxcb-shm0 (= 1.14-3),
 libxcb1 (= 1.14-3),
 libxdmcp6 (= 1:1.1.2-3),
 libxext6 (= 2:1.3.4-1),
 libxft2 (= 2.3.2-2),
 libxml2 (= 2.9.12+dfsg-5),
 libxmuu1 (= 2:1.1.2-2+b3),
 libxrender1 (= 1:0.9.10-1),
 libxss1 (= 1:1.2.3-1),
 libxt6 (= 1:1.2.0-1),
 libzstd1 (= 1.4.8+dfsg-3+rpi1),
 linux-libc-dev (= 5.14.16-1+rpi1),
 littler (= 0.3.14-1),
 login (= 1:4.8.1-2),
 lsb-base (= 11.1.0+rpi1),
 m4 (= 1.4.18-5),
 make (= 4.3-4.1),
 man-db (= 2.9.4-2),
 mawk (= 1.3.4.20200120-2),
 ncurses-base (= 6.3-1),
 ncurses-bin (= 6.3-1),
 openssl (= 1.1.1l-1),
 patch (= 2.7.6-7),
 perl (= 5.32.1-6),
 perl-base (= 5.32.1-6),
 perl-modules-5.32 (= 5.32.1-6),
 pkg-config (= 0.29.2-1),
 po-debconf (= 1.0.21+nmu1),
 r-base-core (= 4.1.2-1),
 r-base-dev (= 4.1.2-1),
 r-bioc-annotate (= 1.72.0+dfsg-1),
 r-bioc-annotationdbi (= 1.56.2-1),
 r-bioc-biobase (= 2.54.0-1),
 r-bioc-biocgenerics (= 0.40.0-1),
 r-bioc-biocparallel (= 1.28.2-2),
 r-bioc-biostrings (= 2.62.0-1),
 r-bioc-edger (= 3.36.0+dfsg-1),
 r-bioc-genefilter (= 1.76.0-1),
 r-bioc-genomeinfodb (= 1.30.0-1),
 r-bioc-genomeinfodbdata (= 1.2.7-1),
 r-bioc-iranges (= 2.28.0-1),
 r-bioc-keggrest (= 1.34.0+dfsg-1),
 r-bioc-limma (= 3.50.0+dfsg-1),
 r-bioc-s4vectors (= 0.32.3-1),
 r-bioc-xvector (= 0.34.0-1),
 r-bioc-zlibbioc (= 1.40.0+dfsg-1),
 r-cran-askpass (= 1.1-2),
 r-cran-bh (= 1.74.0-2),
 r-cran-bit (= 4.0.4+dfsg-1),
 r-cran-bit64 (= 4.0.5-1),
 r-cran-bitops (= 1.0-7-1),
 r-cran-blob (= 1.2.2-1),
 r-cran-cachem (= 1.0.6-1),
 r-cran-crayon (= 1.4.2-1),
 r-cran-curl (= 4.3.2+dfsg-1),
 r-cran-dbi (= 1.1.1-1),
 r-cran-ellipsis (= 0.3.2-2),
 r-cran-fastmap (= 1.1.0-1),
 r-cran-formatr (= 1.11-1),
 r-cran-futile.logger (= 1.4.3-4),
 r-cran-futile.options (= 1.0.1-3),
 r-cran-glue (= 1.5.0-1),
 r-cran-httr (= 1.4.2-1),
 r-cran-jsonlite (= 1.7.2+dfsg-1),
 r-cran-lambda.r (= 1.2.4-2),
 r-cran-lattice (= 0.20-45-1),
 r-cran-littler (= 0.3.14-1),
 r-cran-locfit (= 1.5-9.4-2+b1),
 r-cran-matrix (= 1.3-4-2),
 r-cran-matrixstats (= 0.61.0-1),
 r-cran-memoise (= 2.0.1-1),
 r-cran-mgcv (= 1.8-38-1),
 r-cran-mime (= 0.12-1),
 r-cran-nlme (= 3.1.153-1),
 r-cran-openssl (= 1.4.5+dfsg-1),
 r-cran-pkgconfig (= 2.0.3-2),
 r-cran-pkgkitten (= 0.2.2-2),
 r-cran-plogr (= 0.2.0-3),
 r-cran-png (= 0.1-7-4),
 r-cran-r6 (= 2.5.1-1),
 r-cran-rcpp (= 1.0.7-2),
 r-cran-rcurl (= 1.98-1.5-1),
 r-cran-rlang (= 0.4.12-2),
 r-cran-rsqlite (= 2.2.8-1),
 r-cran-snow (= 1:0.4.4-1),
 r-cran-survival (= 3.2-13-1),
 r-cran-sys (= 3.4-1),
 r-cran-vctrs (= 0.3.8-2),
 r-cran-xml (= 3.99-0.8-1),
 r-cran-xtable (= 1:1.8-4-2),
 readline-common (= 8.1-2),
 rpcsvc-proto (= 1.4.2-4),
 sed (= 4.8-1),
 sensible-utils (= 0.0.17),
 sysvinit-utils (= 3.00-1),
 tar (= 1.34+dfsg-1),
 tzdata (= 2021e-1),
 ucf (= 3.0043),
 unzip (= 6.0-26),
 util-linux (= 2.37.2-4),
 x11-common (= 1:7.7+23),
 xauth (= 1:1.1-1),
 xdg-utils (= 1.1.3-4.1),
 xz-utils (= 5.2.5-2),
 zip (= 3.0-12),
 zlib1g (= 1:1.2.11.dfsg-2),
 zlib1g-dev (= 1:1.2.11.dfsg-2)
Environment:
 DEB_BUILD_OPTIONS="parallel=4"
 LANG="en_GB.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1637911125"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-bioc-sva-dbgsym_3.42.0-1_armhf.deb
------------------------------------

 new Debian package, version 2.0.
 size 4000 bytes: control archive=532 bytes.
     377 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: r-bioc-sva-dbgsym
 Source: r-bioc-sva
 Version: 3.42.0-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 16
 Depends: r-bioc-sva (= 3.42.0-1)
 Section: debug
 Priority: optional
 Description: debug symbols for r-bioc-sva
 Build-Ids: 40b005b5eaeeefd28329f963730acc619ce4918d

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lrwxrwxrwx root/root         0 2021-11-26 07:18 ./usr/share/doc/r-bioc-sva-dbgsym -> r-bioc-sva


r-bioc-sva_3.42.0-1_armhf.deb
-----------------------------

 new Debian package, version 2.0.
 size 441848 bytes: control archive=2280 bytes.
    1723 bytes,    31 lines      control              
    3242 bytes,    39 lines      md5sums              
 Package: r-bioc-sva
 Version: 3.42.0-1
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 946
 Depends: r-base-core (>= 4.1.2-1), r-api-4.0, r-api-bioc-3.14, r-cran-mgcv, r-bioc-genefilter, r-bioc-biocparallel, r-cran-matrixstats, r-bioc-limma, r-bioc-edger
 Suggests: r-bioc-bladderbatch, r-bioc-biocstyle, r-cran-testthat
 Section: gnu-r
 Priority: optional
 Homepage: https://bioconductor.org/packages/sva/
 Description: GNU R Surrogate Variable Analysis
  The sva package contains functions for removing batch
  effects and other unwanted variation in high-throughput
  experiment. Specifically, the sva package contains functions
  for the identifying and building surrogate variables for
  high-dimensional data sets. Surrogate variables are covariates
  constructed directly from high-dimensional data (like gene
  expression/RNA sequencing/methylation/brain imaging data) that
  can be used in subsequent analyses to adjust for unknown,
  unmodeled, or latent sources of noise. The sva package can be
  used to remove artifacts in three ways: (1) identifying and
  estimating surrogate variables for unknown sources of variation
  in high-throughput experiments (Leek and Storey 2007 PLoS
  Genetics,2008 PNAS), (2) directly removing known batch
  effects using ComBat (Johnson et al. 2007 Biostatistics) and (3) removing
  batch effects with known control probes (Leek 2014 biorXiv).
  Removing batch effects and using surrogate variables in
  differential expression analysis have been shown to reduce
  dependence, stabilize error rate estimates, and improve
  reproducibility, see (Leek and Storey 2007 PLoS Genetics, 2008
  PNAS or Leek et al. 2011 Nat. Reviews Genetics).

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| Post Build                                                                   |
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| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
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Build Architecture: armhf
Build Type: any
Build-Space: 2600
Build-Time: 71
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1303
Job: r-bioc-sva_3.42.0-1
Machine Architecture: armhf
Package: r-bioc-sva
Package-Time: 1410
Source-Version: 3.42.0-1
Space: 2600
Status: successful
Version: 3.42.0-1
--------------------------------------------------------------------------------
Finished at 2021-12-04T06:22:02Z
Build needed 00:23:30, 2600k disk space
Raspbian Package Auto-Building

Build log for r-bioc-sva (3.42.0-1) on armhf
