r-bioc-sva →
3.38.0-1 →
armhf → 2020-11-23 18:23:19
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| r-bioc-sva 3.38.0-1 (armhf) Mon, 23 Nov 2020 18:05:28 +0000 |
+==============================================================================+
Package: r-bioc-sva
Version: 3.38.0-1
Source Version: 3.38.0-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-fae612f7-9c62-45ac-940b-fbb2ab97f73b' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-sva-yerhzM/resolver-QFe2tX' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.9 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.8 MB in 10s (2414 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-sva' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-sva.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-sva.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 449 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main r-bioc-sva 3.38.0-1 (dsc) [2158 B]
Get:2 http://172.17.0.1/private bullseye-staging/main r-bioc-sva 3.38.0-1 (tar) [442 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main r-bioc-sva 3.38.0-1 (diff) [5564 B]
Fetched 449 kB in 0s (2106 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-sva-yerhzM/r-bioc-sva-3.38.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-sva-yerhzM' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-mgcv, r-bioc-genefilter, r-bioc-biocparallel, r-cran-matrixstats, r-bioc-limma, r-bioc-edger, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-mgcv, r-bioc-genefilter, r-bioc-biocparallel, r-cran-matrixstats, r-bioc-limma, r-bioc-edger, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [425 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [511 B]
Fetched 1893 B in 0s (23.0 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-10 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost1.71-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcroco3 libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db openssl pkg-config po-debconf r-base-core
r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase
r-bioc-biocgenerics r-bioc-biocparallel r-bioc-edger r-bioc-genefilter
r-bioc-iranges r-bioc-limma r-bioc-s4vectors r-cran-askpass r-cran-bh
r-cran-bit r-cran-bit64 r-cran-blob r-cran-curl r-cran-dbi r-cran-digest
r-cran-ellipsis r-cran-formatr r-cran-futile.logger r-cran-futile.options
r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lambda.r r-cran-lattice
r-cran-littler r-cran-locfit r-cran-matrix r-cran-matrixstats r-cran-memoise
r-cran-mgcv r-cran-mime r-cran-nlme r-cran-openssl r-cran-pkgconfig
r-cran-pkgkitten r-cran-plogr r-cran-r6 r-cran-rcpp r-cran-rlang
r-cran-rsqlite r-cran-snow r-cran-survival r-cran-sys r-cran-vctrs
r-cran-xml r-cran-xtable sensible-utils ucf unzip x11-common xauth xdg-utils
zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc
libasprintf-dev libgettextpo-dev gfortran-doc gfortran-10-doc
libcoarrays-dev groff liblapack-doc libboost-doc libboost1.71-doc
libboost-atomic1.71-dev libboost-chrono1.71-dev libboost-container1.71-dev
libboost-context1.71-dev libboost-contract1.71-dev
libboost-coroutine1.71-dev libboost-date-time1.71-dev
libboost-exception1.71-dev libboost-fiber1.71-dev
libboost-filesystem1.71-dev libboost-graph1.71-dev
libboost-graph-parallel1.71-dev libboost-iostreams1.71-dev
libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev
libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev
libboost-program-options1.71-dev libboost-python1.71-dev
libboost-random1.71-dev libboost-regex1.71-dev
libboost-serialization1.71-dev libboost-stacktrace1.71-dev
libboost-system1.71-dev libboost-test1.71-dev libboost-thread1.71-dev
libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev
libboost1.71-tools-dev libmpfrc++-dev libntl-dev icu-doc liblzma-doc
ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc
gcj-jdk libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser
libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biostrings
r-bioc-go.db r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-bioc-biocstyle
r-cran-knitr r-bioc-all r-bioc-genomicranges r-bioc-delayedarray
r-bioc-rsamtools r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc
r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread
r-cran-codetools r-cran-data.table r-cran-readr r-bioc-rhdf5
r-bioc-summarizedexperiment r-bioc-deseq r-cran-rcolorbrewer
r-bioc-genomicfeatures r-cran-biasedurn r-cran-ellipse r-cran-gplots
r-cran-testthat r-cran-roxygen2 r-cran-rmarkdown r-cran-covr r-cran-crayon
r-cran-pillar r-cran-magrittr r-cran-rmysql r-cran-shiny r-cran-r.utils
r-cran-forcats r-cran-stringr r-cran-ggplot2 r-cran-dplyr r-cran-withr
r-cran-httpuv r-cran-jpeg r-cran-png r-cran-xml2 r-cran-plyr r-cran-sf
r-cran-getopt r-cran-interp r-cran-gam r-cran-base64enc r-cran-scales
r-cran-inline r-cran-cli r-cran-rmpi r-cran-rsprng r-cran-rlecuyer
r-cran-zeallot r-cran-plm r-cran-zoo
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libclass-c3-xs-perl
libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libclone-perl libdevel-partialdump-perl libgpm2 libpng-tools
publicsuffix libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
r-bioc-go.db r-cran-runit r-cran-batchjobs r-cran-doparallel
r-bioc-rsamtools r-cran-batchtools r-cran-rmpi r-cran-statmod r-cran-class
r-cran-knitr r-bioc-xvector r-cran-mass r-bioc-org.hs.eg.db
r-bioc-genomicranges r-cran-testthat r-cran-httpuv r-cran-webutils
r-cran-testit r-cran-codetools r-cran-sp r-cran-sodium r-cran-rmarkdown
r-cran-dbitest r-cran-tibble r-cran-generics r-cran-xml2 r-cran-dplyr
r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-10 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost1.71-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcroco3 libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db openssl pkg-config po-debconf r-base-core
r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase
r-bioc-biocgenerics r-bioc-biocparallel r-bioc-edger r-bioc-genefilter
r-bioc-iranges r-bioc-limma r-bioc-s4vectors r-cran-askpass r-cran-bh
r-cran-bit r-cran-bit64 r-cran-blob r-cran-curl r-cran-dbi r-cran-digest
r-cran-ellipsis r-cran-formatr r-cran-futile.logger r-cran-futile.options
r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lambda.r r-cran-lattice
r-cran-littler r-cran-locfit r-cran-matrix r-cran-matrixstats r-cran-memoise
r-cran-mgcv r-cran-mime r-cran-nlme r-cran-openssl r-cran-pkgconfig
r-cran-pkgkitten r-cran-plogr r-cran-r6 r-cran-rcpp r-cran-rlang
r-cran-rsqlite r-cran-snow r-cran-survival r-cran-sys r-cran-vctrs
r-cran-xml r-cran-xtable sbuild-build-depends-main-dummy sensible-utils ucf
unzip x11-common xauth xdg-utils zip zlib1g-dev
0 upgraded, 219 newly installed, 0 to remove and 13 not upgraded.
Need to get 192 MB of archives.
After this operation, 655 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf bsdextrautils armhf 2.36.1-1 [133 kB]
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Get:4 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
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Get:16 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1h-1 [812 kB]
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Get:22 http://172.17.0.1/private bullseye-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
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Get:33 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.2 [578 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf unzip armhf 6.0-25 [152 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
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Get:59 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.12-1 [700 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.14-2 [110 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.14-2 [101 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.41.0-3 [63.0 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.72.0-1 [300 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [121 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.0-16+rpi1 [232 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.7-1 [1366 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3+b5 [36.5 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.46.2-3 [172 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.46.2-3 [55.7 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.46.2-3 [46.7 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.10+dfsg-1 [886 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+21 [252 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.10-1 [678 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf r-base-core armhf 4.0.3-1 [24.7 MB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-10-dev armhf 10.2.0-16+rpi1 [278 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf gfortran-10 armhf 10.2.0-16+rpi1 [56.1 MB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:10.2.0-1+rpi1 [1428 B]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2+20200918-1 [79.5 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libncurses-dev armhf 6.2+20200918-1 [290 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libncurses5-dev armhf 6.2+20200918-1 [940 B]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libreadline-dev armhf 8.1~rc2-2 [121 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.5-1.1 [241 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:2.0.5-1.1 [66.0 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.34-7 [190 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.34-7 [181 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix2 armhf 10.34-7 [44.7 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.34-7 [614 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 67.1-4 [172 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 67.1-4 [9248 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf r-base-dev all 4.0.3-1 [4484 B]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libencode-locale-perl all 1.05-1 [13.7 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libtimedate-perl all 2.3300-1 [39.2 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libio-html-perl all 1.001-1 [17.6 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf liburi-perl all 5.05-1 [90.3 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libhttp-message-perl all 6.26-1 [79.4 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf libsub-install-perl all 0.928-1 [11.4 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf libdata-optlist-perl all 0.110-1 [10.6 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libdynaloader-functions-perl all 0.003-1 [12.6 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf libmodule-implementation-perl all 0.09-1 [12.9 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf libpackage-stash-perl all 0.38-1 [21.7 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b4 [14.3 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf libdevel-globaldestruction-perl all 0.14-1 [8084 B]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf libalgorithm-c3-perl all 0.10-1 [12.0 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf libclass-c3-perl all 0.34-1 [22.4 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf libmro-compat-perl all 0.13-1 [12.2 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf libdevel-overloadinfo-perl all 0.005-1 [7212 B]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf libsub-exporter-perl all 0.987-1 [47.2 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf libdist-checkconflicts-perl all 0.11-1 [10.8 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1 [6882 B]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1 [16.4 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.5 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf libmoose-perl armhf 2.2013-1+b1 [806 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf libb-hooks-endofscope-perl all 0.24-1 [18.6 kB]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.72.0-1 [297 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf libwww-curl-perl armhf 4.17-7+b1 [58.9 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:167 http://172.17.0.1/private bullseye-staging/main armhf dh-r all 20201117 [40.8 kB]
Get:168 http://172.17.0.1/private bullseye-staging/main armhf libboost1.71-dev armhf 1.71.0-7+b1 [9098 kB]
Get:169 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.71.0.3+b5 [4624 B]
Get:170 http://172.17.0.1/private bullseye-staging/main armhf r-cran-littler armhf 0.3.12-1 [92.4 kB]
Get:171 http://172.17.0.1/private bullseye-staging/main armhf littler all 0.3.12-1 [15.6 kB]
Get:172 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biocgenerics all 0.36.0-1 [648 kB]
Get:173 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biobase armhf 2.50.0-1 [2228 kB]
Get:174 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-s4vectors armhf 0.28.0-1 [2019 kB]
Get:175 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-iranges armhf 2.24.0-1 [2204 kB]
Get:176 http://172.17.0.1/private bullseye-staging/main armhf r-cran-dbi all 1.1.0-3 [599 kB]
Get:177 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bit armhf 4.0.4+dfsg-1 [418 kB]
Get:178 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB]
Get:179 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rlang armhf 0.4.8-1 [1131 kB]
Get:180 http://172.17.0.1/private bullseye-staging/main armhf r-cran-ellipsis armhf 0.3.1-1 [31.5 kB]
Get:181 http://172.17.0.1/private bullseye-staging/main armhf r-cran-digest armhf 0.6.27-1 [186 kB]
Get:182 http://172.17.0.1/private bullseye-staging/main armhf r-cran-glue armhf 1.4.2-1 [139 kB]
Get:183 http://172.17.0.1/private bullseye-staging/main armhf r-cran-vctrs armhf 0.3.5-1 [1077 kB]
Get:184 http://172.17.0.1/private bullseye-staging/main armhf r-cran-blob all 1.2.1-2 [49.1 kB]
Get:185 http://172.17.0.1/private bullseye-staging/main armhf r-cran-memoise all 1.1.0-3 [39.2 kB]
Get:186 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:187 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pkgkitten all 0.2.0-1 [25.3 kB]
Get:188 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcpp armhf 1.0.5-1 [2009 kB]
Get:189 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bh all 1.66.0-1 [5072 B]
Get:190 http://172.17.0.1/private bullseye-staging/main armhf r-cran-plogr all 0.2.0-3 [14.9 kB]
Get:191 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rsqlite armhf 2.2.1-1 [911 kB]
Get:192 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-annotationdbi all 1.52.0-1 [4707 kB]
Get:193 http://172.17.0.1/private bullseye-staging/main armhf r-cran-xml armhf 3.99-0.5-1 [1717 kB]
Get:194 http://172.17.0.1/private bullseye-staging/main armhf r-cran-xtable all 1:1.8-4-2 [689 kB]
Get:195 http://172.17.0.1/private bullseye-staging/main armhf r-cran-curl armhf 4.3+dfsg-1+b1 [150 kB]
Get:196 http://172.17.0.1/private bullseye-staging/main armhf r-cran-jsonlite armhf 1.7.1+dfsg-1 [442 kB]
Get:197 http://172.17.0.1/private bullseye-staging/main armhf r-cran-mime armhf 0.9-1+b1 [35.4 kB]
Get:198 http://172.17.0.1/private bullseye-staging/main armhf r-cran-sys armhf 3.4-1 [42.7 kB]
Get:199 http://172.17.0.1/private bullseye-staging/main armhf r-cran-askpass armhf 1.1-2 [22.3 kB]
Get:200 http://172.17.0.1/private bullseye-staging/main armhf r-cran-openssl armhf 1.4.3+dfsg-1 [374 kB]
Get:201 http://172.17.0.1/private bullseye-staging/main armhf r-cran-r6 all 2.5.0-1 [104 kB]
Get:202 http://172.17.0.1/private bullseye-staging/main armhf r-cran-httr all 1.4.2-1 [478 kB]
Get:203 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-annotate all 1.68.0+dfsg-1 [2103 kB]
Get:204 http://172.17.0.1/private bullseye-staging/main armhf r-cran-formatr all 1.7-2 [151 kB]
Get:205 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:206 http://172.17.0.1/private bullseye-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:207 http://172.17.0.1/private bullseye-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:208 http://172.17.0.1/private bullseye-staging/main armhf r-cran-snow all 1:0.4.3-2 [109 kB]
Get:209 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-biocparallel armhf 1.24.1-1 [1136 kB]
Get:210 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-limma armhf 3.46.0+dfsg-1 [1762 kB]
Get:211 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lattice armhf 0.20-41-1+b1 [1167 kB]
Get:212 http://172.17.0.1/private bullseye-staging/main armhf r-cran-locfit armhf 1.5-9.4-2+b1 [485 kB]
Get:213 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-edger armhf 3.32.0+dfsg-1 [1057 kB]
Get:214 http://172.17.0.1/private bullseye-staging/main armhf r-cran-matrix armhf 1.2-18-1+b1 [3451 kB]
Get:215 http://172.17.0.1/private bullseye-staging/main armhf r-cran-survival armhf 3.2-7-1 [7616 kB]
Get:216 http://172.17.0.1/private bullseye-staging/main armhf r-bioc-genefilter armhf 1.72.0-1 [1730 kB]
Get:217 http://172.17.0.1/private bullseye-staging/main armhf r-cran-matrixstats armhf 0.57.0-1 [574 kB]
Get:218 http://172.17.0.1/private bullseye-staging/main armhf r-cran-nlme armhf 3.1.150-1 [2216 kB]
Get:219 http://172.17.0.1/private bullseye-staging/main armhf r-cran-mgcv armhf 1.8-33-1 [2958 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 192 MB in 24s (7872 kB/s)
Selecting previously unselected package bsdextrautils.
(Reading database ... 12445 files and directories currently installed.)
Preparing to unpack .../000-bsdextrautils_2.36.1-1_armhf.deb ...
Unpacking bsdextrautils (2.36.1-1) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../001-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
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Preparing to unpack .../002-groff-base_1.22.4-5_armhf.deb ...
Unpacking groff-base (1.22.4-5) ...
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Preparing to unpack .../003-libpipeline1_1.5.3-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.3-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../004-man-db_2.9.3-2_armhf.deb ...
Unpacking man-db (2.9.3-2) ...
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Preparing to unpack .../005-sensible-utils_0.0.12+nmu1_all.deb ...
Unpacking sensible-utils (0.0.12+nmu1) ...
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Preparing to unpack .../006-libmagic-mgc_1%3a5.38-5_armhf.deb ...
Unpacking libmagic-mgc (1:5.38-5) ...
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invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
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Setting up libicu-dev:armhf (67.1-4) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.2) ...
Setting up xdg-utils (1.1.3-2) ...
Setting up liburi-perl (5.05-1) ...
Setting up libblas-dev:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-4) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up r-cran-bh (1.66.0-1) ...
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.2+20200918-1) ...
Setting up libxcb1:armhf (1.14-2) ...
Setting up libpcre2-dev:armhf (10.34-7) ...
Setting up libtool (2.4.6-14) ...
Setting up libxcb-render0:armhf (1.14-2) ...
Setting up libpcre3-dev:armhf (2:8.39-13) ...
Setting up libpng-dev:armhf (1.6.37-3) ...
Setting up libjpeg-dev (1:2.0.5-1.1) ...
Setting up m4 (1.4.18-4) ...
Setting up libcurl3-gnutls:armhf (7.72.0-1) ...
Setting up libxcb-shm0:armhf (1.14-2) ...
Setting up libclass-c3-perl (0.34-1) ...
Setting up libreadline-dev:armhf (8.1~rc2-2) ...
Setting up libdevel-callchecker-perl (0.008-1+b2) ...
Setting up libthai0:armhf (0.1.28-3) ...
Setting up ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
126 added, 0 removed; done.
Setting up libfreetype6:armhf (2.10.2+dfsg-4) ...
Setting up liblapack-dev:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up gfortran-10 (10.2.0-16+rpi1) ...
Setting up libdata-optlist-perl (0.110-1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up ucf (3.0043) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up libncurses5-dev:armhf (6.2+20200918-1) ...
Setting up libcurl4:armhf (7.72.0-1) ...
Setting up libx11-6:armhf (2:1.6.12-1) ...
Setting up libharfbuzz0b:armhf (2.6.7-1) ...
Setting up libmro-compat-perl (0.13-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2+b3) ...
Setting up libsub-exporter-perl (0.987-1) ...
Setting up libhttp-message-perl (6.26-1) ...
Setting up libeval-closure-perl (0.14-1) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up gettext (0.19.8.1-10) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libwww-curl-perl (4.17-7+b1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:10.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up libdist-checkconflicts-perl (0.11-1) ...
Setting up libxt6:armhf (1:1.2.0-1) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up libmodule-implementation-perl (0.09-1) ...
Setting up libpackage-stash-perl (0.38-1) ...
Setting up po-debconf (1.0.21) ...
Setting up libtk8.6:armhf (8.6.10-1) ...
Setting up libpango-1.0-0:armhf (1.46.2-3) ...
Setting up libmodule-runtime-conflicts-perl (0.003-1) ...
Setting up libcairo2:armhf (1.16.0-4) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up libpackage-deprecationmanager-perl (0.17-1) ...
Setting up libdevel-overloadinfo-perl (0.005-1) ...
Setting up libclass-load-xs-perl (0.10-1+b4) ...
Setting up libpangoft2-1.0-0:armhf (1.46.2-3) ...
Setting up libb-hooks-endofscope-perl (0.24-1) ...
Setting up libpangocairo-1.0-0:armhf (1.46.2-3) ...
Setting up libmoose-perl (2.2013-1+b1) ...
Setting up r-base-core (4.0.3-1) ...
Creating config file /etc/R/Renviron with new version
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.20-41-1+b1) ...
Setting up r-cran-nlme (3.1.150-1) ...
Setting up r-cran-formatr (1.7-2) ...
Setting up r-cran-xml (3.99-0.5-1) ...
Setting up r-cran-locfit (1.5-9.4-2+b1) ...
Setting up r-cran-r6 (2.5.0-1) ...
Setting up r-cran-pkgkitten (0.2.0-1) ...
Setting up r-cran-littler (0.3.12-1) ...
Setting up r-cran-rcpp (1.0.5-1) ...
Setting up r-cran-curl (4.3+dfsg-1+b1) ...
Setting up r-bioc-biocgenerics (0.36.0-1) ...
Setting up r-cran-rlang (0.4.8-1) ...
Setting up r-cran-matrixstats (0.57.0-1) ...
Setting up r-base-dev (4.0.3-1) ...
Setting up littler (0.3.12-1) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up r-cran-sys (3.4-1) ...
Setting up r-cran-plogr (0.2.0-3) ...
Setting up r-cran-mime (0.9-1+b1) ...
Setting up r-cran-digest (0.6.27-1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-dbi (1.1.0-3) ...
Setting up r-cran-snow (1:0.4.3-2) ...
Setting up r-cran-glue (1.4.2-1) ...
Setting up r-cran-bit (4.0.4+dfsg-1) ...
Setting up r-cran-xtable (1:1.8-4-2) ...
Setting up r-cran-bit64 (4.0.5-1) ...
Setting up r-cran-askpass (1.1-2) ...
Setting up r-bioc-biobase (2.50.0-1) ...
Setting up r-cran-jsonlite (1.7.1+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-bioc-s4vectors (0.28.0-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up r-cran-memoise (1.1.0-3) ...
Setting up r-bioc-limma (3.46.0+dfsg-1) ...
Setting up r-cran-matrix (1.2-18-1+b1) ...
Setting up r-cran-mgcv (1.8-33-1) ...
Setting up r-bioc-iranges (2.24.0-1) ...
Setting up r-cran-ellipsis (0.3.1-1) ...
Setting up r-cran-openssl (1.4.3+dfsg-1) ...
Setting up r-bioc-biocparallel (1.24.1-1) ...
Setting up r-bioc-edger (3.32.0+dfsg-1) ...
Setting up r-cran-survival (3.2-7-1) ...
Setting up r-cran-httr (1.4.2-1) ...
Setting up r-cran-vctrs (0.3.5-1) ...
Setting up r-cran-blob (1.2.1-2) ...
Setting up r-cran-rsqlite (2.2.1-1) ...
Setting up r-bioc-annotationdbi (1.52.0-1) ...
Setting up r-bioc-annotate (1.68.0+dfsg-1) ...
Setting up r-bioc-genefilter (1.72.0-1) ...
Setting up debhelper (13.2.1) ...
Setting up dh-autoreconf (19) ...
Setting up dh-r (20201117) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-4+rpi1) ...
Processing triggers for ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.35.1-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-16+rpi1 gcc-10_10.2.0-16+rpi1 libc6-dev_2.31-4+rpi1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc2-1 binutils_2.35.1-2+rpi1 binutils-arm-linux-gnueabihf_2.35.1-2+rpi1 binutils-common_2.35.1-2+rpi1 bsdextrautils_2.36.1-1 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 ca-certificates_20200601 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-16+rpi1 dash_0.5.11+git20200708+dd9ef66-2 dctrl-tools_2.24-3 debconf_1.5.74 debhelper_13.2.1 debianutils_4.11.2 dh-autoreconf_19 dh-r_20201117 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 file_1:5.38-5 findutils_4.7.0+git20201010-2 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-16+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-16+rpi1 gcc-10-base_10.2.0-16+rpi1 gcc-7-base_7.5.0-6+rpi1+b1 gcc-8-base_8.4.0-4+rpi1+b1 gcc-9-base_9.3.0-18+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran_4:10.2.0-1+rpi1 gfortran-10_10.2.0-16+rpi1 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 icu-devtools_67.1-4 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libalgorithm-c3-perl_0.10-1 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libasan6_10.2.0-16+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-16+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libb-hooks-endofscope-perl_0.24-1 libb-hooks-op-check-perl_0.22-1+b4 libbinutils_2.35.1-2+rpi1 libblas-dev_3.9.0-3 libblas3_3.9.0-3 libblkid1_2.36-3 libboost-dev_1.71.0.3+b5 libboost1.71-dev_1.71.0-7+b1 libbrotli1_1.0.9-2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.31-4+rpi1 libc-dev-bin_2.31-4+rpi1 libc6_2.31-4+rpi1 libc6-dev_2.31-4+rpi1 libcairo2_1.16.0-4 libcap-ng0_0.7.9-2.2 libcc1-0_10.2.0-16+rpi1 libclass-c3-perl_0.34-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-1+b4 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2+rpi1 libctf0_2.35.1-2+rpi1 libcurl3-gnutls_7.72.0-1 libcurl4_7.72.0-1 libdata-optlist-perl_0.110-1 libdatrie1_0.2.12-3+b5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdevel-callchecker-perl_0.008-1+b2 libdevel-globaldestruction-perl_0.14-1 libdevel-overloadinfo-perl_0.005-1 libdevel-stacktrace-perl_2.0400-1 libdist-checkconflicts-perl_0.11-1 libdpkg-perl_1.20.5+rpi1 libdynaloader-functions-perl_0.003-1 libelf1_0.182-1 libencode-locale-perl_1.05-1 libeval-closure-perl_0.14-1 libexpat1_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.2+dfsg-4 libfribidi0_1.0.8-2 libgcc-10-dev_10.2.0-16+rpi1 libgcc-s1_10.2.0-16+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran-10-dev_10.2.0-16+rpi1 libgfortran5_10.2.0-16+rpi1 libglib2.0-0_2.66.2-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-16+rpi1 libgpg-error0_1.38-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.17-10+b3 libharfbuzz0b_2.6.7-1 libhogweed6_3.6-2 libhttp-date-perl_6.05-1 libhttp-message-perl_6.26-1 libice6_2:1.0.10-1 libicu-dev_67.1-4 libicu67_67.1-4 libidn2-0_2.3.0-3 libio-html-perl_1.001-1 libisl22_0.22.1-1 libjbig0_2.1-3.1+b2 libjpeg-dev_1:2.0.5-1.1 libjpeg62-turbo_1:2.0.5-1.1 libjpeg62-turbo-dev_1:2.0.5-1.1 libk5crypto3_1.17-10+b3 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10+b3 libkrb5support0_1.17-10+b3 libksba8_1.4.0-2 liblapack-dev_3.9.0-3 liblapack3_3.9.0-3 libldap-2.4-2_2.4.56+dfsg-1+rpi1+b1 liblocale-gettext-perl_1.07-4+b1 liblwp-mediatypes-perl_6.04-1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmodule-implementation-perl_0.09-1 libmodule-runtime-conflicts-perl_0.003-1 libmodule-runtime-perl_0.016-1 libmoose-perl_2.2013-1+b1 libmount1_2.36-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmro-compat-perl_0.13-1 libnamespace-clean-perl_0.27-1 libncurses-dev_6.2+20200918-1 libncurses5-dev_6.2+20200918-1 libncurses6_6.2+20200918-1 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnghttp2-14_1.41.0-3 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.21-2 libpackage-deprecationmanager-perl_0.17-1 libpackage-stash-perl_0.38-1 libpackage-stash-xs-perl_0.29-1+b2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpango-1.0-0_1.46.2-3 libpangocairo-1.0-0_1.46.2-3 libpangoft2-1.0-0_1.46.2-3 libpaper-utils_1.1.28 libpaper1_1.1.28 libparams-classify-perl_0.015-1+b3 libparams-util-perl_1.102-1+b1 libpcre16-3_2:8.39-13 libpcre2-16-0_10.34-7 libpcre2-32-0_10.34-7 libpcre2-8-0_10.34-7 libpcre2-dev_10.34-7 libpcre2-posix2_10.34-7 libpcre3_2:8.39-13 libpcre3-dev_2:8.39-13 libpcre32-3_2:8.39-13 libpcrecpp0v5_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpixman-1-0_0.36.0-1 libpng-dev_1.6.37-3 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.1 libreadline-dev_8.1~rc2-2 libreadline8_8.1~rc2-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 libsub-exporter-perl_0.987-1 libsub-exporter-progressive-perl_0.001013-1 libsub-identify-perl_0.14-1+b3 libsub-install-perl_0.928-1 libsub-name-perl_0.26-1+b1 libsub-override-perl_0.09-2 libswitch-perl_2.17-2 libsystemd0_246.6-2+rpi1 libtasn1-6_4.16.0-2 libtcl8.6_8.6.10+dfsg-1 libtext-iconv-perl_1.7-7+b1 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.1.0+git191117-2 libtimedate-perl_2.3300-1 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtk8.6_8.6.10-1 libtool_2.4.6-14 libtry-tiny-perl_0.30-1 libubsan1_10.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-2+rpi1 libunistring2_0.9.10-4 liburi-perl_5.05-1 libuuid1_2.36-3 libvariable-magic-perl_0.62-1+b3 libwebp6_0.6.1-2 libwww-curl-perl_4.17-7+b1 libwww-curl-simple-perl_0.100191-2 libx11-6_2:1.6.12-1 libx11-data_2:1.6.12-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.14-2 libxcb-shm0_1.14-2 libxcb1_1.14-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.10+dfsg-6.2 libxmuu1_2:1.1.2-2+b3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.2.0-1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 littler_0.3.12-1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 openssl_1.1.1h-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21 r-base-core_4.0.3-1 r-base-dev_4.0.3-1 r-bioc-annotate_1.68.0+dfsg-1 r-bioc-annotationdbi_1.52.0-1 r-bioc-biobase_2.50.0-1 r-bioc-biocgenerics_0.36.0-1 r-bioc-biocparallel_1.24.1-1 r-bioc-edger_3.32.0+dfsg-1 r-bioc-genefilter_1.72.0-1 r-bioc-iranges_2.24.0-1 r-bioc-limma_3.46.0+dfsg-1 r-bioc-s4vectors_0.28.0-1 r-cran-askpass_1.1-2 r-cran-bh_1.66.0-1 r-cran-bit_4.0.4+dfsg-1 r-cran-bit64_4.0.5-1 r-cran-blob_1.2.1-2 r-cran-curl_4.3+dfsg-1+b1 r-cran-dbi_1.1.0-3 r-cran-digest_0.6.27-1 r-cran-ellipsis_0.3.1-1 r-cran-formatr_1.7-2 r-cran-futile.logger_1.4.3-4 r-cran-futile.options_1.0.1-3 r-cran-glue_1.4.2-1 r-cran-httr_1.4.2-1 r-cran-jsonlite_1.7.1+dfsg-1 r-cran-lambda.r_1.2.4-2 r-cran-lattice_0.20-41-1+b1 r-cran-littler_0.3.12-1 r-cran-locfit_1.5-9.4-2+b1 r-cran-matrix_1.2-18-1+b1 r-cran-matrixstats_0.57.0-1 r-cran-memoise_1.1.0-3 r-cran-mgcv_1.8-33-1 r-cran-mime_0.9-1+b1 r-cran-nlme_3.1.150-1 r-cran-openssl_1.4.3+dfsg-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.0-1 r-cran-plogr_0.2.0-3 r-cran-r6_2.5.0-1 r-cran-rcpp_1.0.5-1 r-cran-rlang_0.4.8-1 r-cran-rsqlite_2.2.1-1 r-cran-snow_1:0.4.3-2 r-cran-survival_3.2-7-1 r-cran-sys_3.4-1 r-cran-vctrs_0.3.5-1 r-cran-xml_3.99-0.5-1 r-cran-xtable_1:1.8-4-2 raspbian-archive-keyring_20120528.2 readline-common_8.1~rc2-2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020d-1 ucf_3.0043 unzip_6.0-25 util-linux_2.36-3 x11-common_1:7.7+21 xauth_1:1.0.10-1 xdg-utils_1.1.3-2 xz-utils_5.2.4-1 zip_3.0-11 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
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Hash: SHA512
Format: 3.0 (quilt)
Source: r-bioc-sva
Binary: r-bioc-sva
Architecture: any
Version: 3.38.0-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://bioconductor.org/packages/sva/
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-sva
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-sva.git
Testsuite: autopkgtest, autopkgtest-pkg-r
Testsuite-Triggers: r-bioc-bladderbatch, r-cran-testthat
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-mgcv, r-bioc-genefilter, r-bioc-biocparallel, r-cran-matrixstats, r-bioc-limma, r-bioc-edger
Package-List:
r-bioc-sva deb gnu-r optional arch=any
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.KImWmaBP/trustedkeys.kbx': General error
gpgv: Signature made Tue Nov 3 11:35:40 2020 UTC
gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-sva_3.38.0-1.dsc
dpkg-source: info: extracting r-bioc-sva in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-sva_3.38.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-sva_3.38.0-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=1ec3ff19654148fab3a02153247d5928
JOURNAL_STREAM=8:145870
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-fae612f7-9c62-45ac-940b-fbb2ab97f73b
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c18032
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-bioc-sva
dpkg-buildpackage: info: source version 3.38.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R packages needed for DEP8: testthat, bladderbatch
I: R Package: sva Version: 3.38.0
I: Building using R version 4.0.3-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Tue, 03 Nov 2020 12:23:28 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-sva/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-sva/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 03 Nov 2020 12:23:28 +0100'"
* installing *source* package ‘sva’ ...
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sva.c -o sva.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o sva.so sva.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-sva/usr/lib/R/site-library/00LOCK-r-bioc-sva-3.38.0/00new/sva/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sva)
W: Ignoring specified R dependency: R (>= 3.2)
I: Using r-cran-mgcv for Depends:mgcv
I: Using r-bioc-genefilter for Depends:genefilter
I: Using r-bioc-biocparallel for Depends:BiocParallel
I: Using r-cran-testthat for Recommends:testthat
I: Using r-bioc-bladderbatch for Recommends:bladderbatch
W: Cannot find a debian package for Suggests:pamr
W: Cannot find a debian package for Suggests:BiocStyle
W: Cannot find a debian package for Suggests:zebrafishRNASeq
I: Using r-cran-matrixstats for Imports:matrixStats
I: Using r-bioc-limma for Imports:limma
I: Using r-bioc-edger for Imports:edgeR
I: BioConductor API version: r-api-bioc-3.12
I: Use r-bioc-sva as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -a -O--buildsystem=R
dh_strip -a -a -O--buildsystem=R
dh_makeshlibs -a -a -O--buildsystem=R
dh_shlibdeps -a -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dpkg-gencontrol: warning: Depends field of package r-bioc-sva: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: Depends field of package r-bioc-sva: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-sva-dbgsym' in '../r-bioc-sva-dbgsym_3.38.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-sva' in '../r-bioc-sva_3.38.0-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> >../r-bioc-sva_3.38.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-11-23T18:23:12Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-sva_3.38.0-1_armhf.changes:
----------------------------------
Format: 1.8
Date: Tue, 03 Nov 2020 12:23:28 +0100
Source: r-bioc-sva
Binary: r-bioc-sva r-bioc-sva-dbgsym
Architecture: armhf
Version: 3.38.0-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
r-bioc-sva - GNU R Surrogate Variable Analysis
Changes:
r-bioc-sva (3.38.0-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* debhelper-compat 13 (routine-update)
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: r-bioc-sva
Binary: r-bioc-sva r-bioc-sva-dbgsym
Architecture: armhf
Version: 3.38.0-1
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Mon, 23 Nov 2020 18:23:11 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.69-11.1),
automake (= 1:1.16.2-4),
autopoint (= 0.19.8.1-10),
autotools-dev (= 20180224.1),
base-files (= 11+rpi1),
base-passwd (= 3.5.48),
bash (= 5.1~rc2-1),
binutils (= 2.35.1-2+rpi1),
binutils-arm-linux-gnueabihf (= 2.35.1-2+rpi1),
binutils-common (= 2.35.1-2+rpi1),
bsdextrautils (= 2.36.1-1),
bsdutils (= 1:2.36-3),
build-essential (= 12.8),
bzip2 (= 1.0.8-4),
ca-certificates (= 20200601),
coreutils (= 8.32-4),
cpp (= 4:10.2.0-1+rpi1),
cpp-10 (= 10.2.0-16+rpi1),
dash (= 0.5.11+git20200708+dd9ef66-2),
dctrl-tools (= 2.24-3),
debconf (= 1.5.74),
debhelper (= 13.2.1),
debianutils (= 4.11.2),
dh-autoreconf (= 19),
dh-r (= 20201117),
dh-strip-nondeterminism (= 1.9.0-1),
diffutils (= 1:3.7-3),
dpkg (= 1.20.5+rpi1),
dpkg-dev (= 1.20.5+rpi1),
dwz (= 0.13-5),
file (= 1:5.38-5),
findutils (= 4.7.0+git20201010-2),
fontconfig (= 2.13.1-4.2),
fontconfig-config (= 2.13.1-4.2),
fonts-dejavu-core (= 2.37-2),
g++ (= 4:10.2.0-1+rpi1),
g++-10 (= 10.2.0-16+rpi1),
gcc (= 4:10.2.0-1+rpi1),
gcc-10 (= 10.2.0-16+rpi1),
gcc-10-base (= 10.2.0-16+rpi1),
gettext (= 0.19.8.1-10),
gettext-base (= 0.19.8.1-10),
gfortran (= 4:10.2.0-1+rpi1),
gfortran-10 (= 10.2.0-16+rpi1),
grep (= 3.6-1),
groff-base (= 1.22.4-5),
gzip (= 1.10-2),
hostname (= 3.23),
icu-devtools (= 67.1-4),
init-system-helpers (= 1.58),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.2.53-8),
libalgorithm-c3-perl (= 0.10-1),
libarchive-zip-perl (= 1.68-1),
libasan6 (= 10.2.0-16+rpi1),
libatomic1 (= 10.2.0-16+rpi1),
libattr1 (= 1:2.4.48-5),
libaudit-common (= 1:2.8.5-3.1),
libaudit1 (= 1:2.8.5-3.1),
libb-hooks-endofscope-perl (= 0.24-1),
libb-hooks-op-check-perl (= 0.22-1+b4),
libbinutils (= 2.35.1-2+rpi1),
libblas-dev (= 3.9.0-3),
libblas3 (= 3.9.0-3),
libblkid1 (= 2.36-3),
libboost-dev (= 1.71.0.3+b5),
libboost1.71-dev (= 1.71.0-7+b1),
libbrotli1 (= 1.0.9-2),
libbsd0 (= 0.10.0-1),
libbz2-1.0 (= 1.0.8-4),
libbz2-dev (= 1.0.8-4),
libc-bin (= 2.31-4+rpi1),
libc-dev-bin (= 2.31-4+rpi1),
libc6 (= 2.31-4+rpi1),
libc6-dev (= 2.31-4+rpi1),
libcairo2 (= 1.16.0-4),
libcap-ng0 (= 0.7.9-2.2),
libcc1-0 (= 10.2.0-16+rpi1),
libclass-c3-perl (= 0.34-1),
libclass-load-perl (= 0.25-1),
libclass-load-xs-perl (= 0.10-1+b4),
libcom-err2 (= 1.45.6-1),
libcroco3 (= 0.6.13-1),
libcrypt-dev (= 1:4.4.17-1),
libcrypt1 (= 1:4.4.17-1),
libctf-nobfd0 (= 2.35.1-2+rpi1),
libctf0 (= 2.35.1-2+rpi1),
libcurl3-gnutls (= 7.72.0-1),
libcurl4 (= 7.72.0-1),
libdata-optlist-perl (= 0.110-1),
libdatrie1 (= 0.2.12-3+b5),
libdb5.3 (= 5.3.28+dfsg1-0.6),
libdebconfclient0 (= 0.255),
libdebhelper-perl (= 13.2.1),
libdevel-callchecker-perl (= 0.008-1+b2),
libdevel-globaldestruction-perl (= 0.14-1),
libdevel-overloadinfo-perl (= 0.005-1),
libdevel-stacktrace-perl (= 2.0400-1),
libdist-checkconflicts-perl (= 0.11-1),
libdpkg-perl (= 1.20.5+rpi1),
libdynaloader-functions-perl (= 0.003-1),
libelf1 (= 0.182-1),
libencode-locale-perl (= 1.05-1),
libeval-closure-perl (= 0.14-1),
libexpat1 (= 2.2.10-1),
libffi7 (= 3.3-5),
libfile-stripnondeterminism-perl (= 1.9.0-1),
libfile-which-perl (= 1.23-1),
libfontconfig1 (= 2.13.1-4.2),
libfreetype6 (= 2.10.2+dfsg-4),
libfribidi0 (= 1.0.8-2),
libgcc-10-dev (= 10.2.0-16+rpi1),
libgcc-s1 (= 10.2.0-16+rpi1),
libgcrypt20 (= 1.8.7-2),
libgdbm-compat4 (= 1.18.1-5.1),
libgdbm6 (= 1.18.1-5.1),
libgfortran-10-dev (= 10.2.0-16+rpi1),
libgfortran5 (= 10.2.0-16+rpi1),
libglib2.0-0 (= 2.66.2-1),
libgmp10 (= 2:6.2.0+dfsg-6),
libgnutls30 (= 3.6.15-4),
libgomp1 (= 10.2.0-16+rpi1),
libgpg-error0 (= 1.38-2),
libgraphite2-3 (= 1.3.14-1),
libgssapi-krb5-2 (= 1.17-10+b3),
libharfbuzz0b (= 2.6.7-1),
libhogweed6 (= 3.6-2),
libhttp-date-perl (= 6.05-1),
libhttp-message-perl (= 6.26-1),
libice6 (= 2:1.0.10-1),
libicu-dev (= 67.1-4),
libicu67 (= 67.1-4),
libidn2-0 (= 2.3.0-3),
libio-html-perl (= 1.001-1),
libisl22 (= 0.22.1-1),
libjbig0 (= 2.1-3.1+b2),
libjpeg-dev (= 1:2.0.5-1.1),
libjpeg62-turbo (= 1:2.0.5-1.1),
libjpeg62-turbo-dev (= 1:2.0.5-1.1),
libk5crypto3 (= 1.17-10+b3),
libkeyutils1 (= 1.6.1-2),
libkrb5-3 (= 1.17-10+b3),
libkrb5support0 (= 1.17-10+b3),
liblapack-dev (= 3.9.0-3),
liblapack3 (= 3.9.0-3),
libldap-2.4-2 (= 2.4.56+dfsg-1+rpi1+b1),
liblwp-mediatypes-perl (= 6.04-1),
liblz4-1 (= 1.9.2-2),
liblzma-dev (= 5.2.4-1),
liblzma5 (= 5.2.4-1),
libmagic-mgc (= 1:5.38-5),
libmagic1 (= 1:5.38-5),
libmodule-implementation-perl (= 0.09-1),
libmodule-runtime-conflicts-perl (= 0.003-1),
libmodule-runtime-perl (= 0.016-1),
libmoose-perl (= 2.2013-1+b1),
libmount1 (= 2.36-3),
libmpc3 (= 1.2.0-1),
libmpfr6 (= 4.1.0-3),
libmro-compat-perl (= 0.13-1),
libnamespace-clean-perl (= 0.27-1),
libncurses-dev (= 6.2+20200918-1),
libncurses5-dev (= 6.2+20200918-1),
libncurses6 (= 6.2+20200918-1),
libncursesw6 (= 6.2+20200918-1),
libnettle8 (= 3.6-2),
libnghttp2-14 (= 1.41.0-3),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libnss-nis (= 3.1-4),
libnss-nisplus (= 1.3-4),
libp11-kit0 (= 0.23.21-2),
libpackage-deprecationmanager-perl (= 0.17-1),
libpackage-stash-perl (= 0.38-1),
libpackage-stash-xs-perl (= 0.29-1+b2),
libpam-modules (= 1.3.1-5),
libpam-modules-bin (= 1.3.1-5),
libpam-runtime (= 1.3.1-5),
libpam0g (= 1.3.1-5),
libpango-1.0-0 (= 1.46.2-3),
libpangocairo-1.0-0 (= 1.46.2-3),
libpangoft2-1.0-0 (= 1.46.2-3),
libpaper-utils (= 1.1.28),
libpaper1 (= 1.1.28),
libparams-classify-perl (= 0.015-1+b3),
libparams-util-perl (= 1.102-1+b1),
libpcre16-3 (= 2:8.39-13),
libpcre2-16-0 (= 10.34-7),
libpcre2-32-0 (= 10.34-7),
libpcre2-8-0 (= 10.34-7),
libpcre2-dev (= 10.34-7),
libpcre2-posix2 (= 10.34-7),
libpcre3 (= 2:8.39-13),
libpcre3-dev (= 2:8.39-13),
libpcre32-3 (= 2:8.39-13),
libpcrecpp0v5 (= 2:8.39-13),
libperl5.32 (= 5.32.0-5),
libpipeline1 (= 1.5.3-1),
libpixman-1-0 (= 0.36.0-1),
libpng-dev (= 1.6.37-3),
libpng16-16 (= 1.6.37-3),
libpsl5 (= 0.21.0-1.1),
libreadline-dev (= 8.1~rc2-2),
libreadline8 (= 8.1~rc2-2),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.27+dfsg-2),
libsasl2-modules-db (= 2.1.27+dfsg-2),
libseccomp2 (= 2.5.0-3+rpi1),
libselinux1 (= 3.1-2),
libsigsegv2 (= 2.12-2),
libsm6 (= 2:1.2.3-1),
libsmartcols1 (= 2.36-3),
libssh2-1 (= 1.8.0-2.1),
libssl1.1 (= 1.1.1h-1),
libstdc++-10-dev (= 10.2.0-16+rpi1),
libstdc++6 (= 10.2.0-16+rpi1),
libsub-exporter-perl (= 0.987-1),
libsub-exporter-progressive-perl (= 0.001013-1),
libsub-identify-perl (= 0.14-1+b3),
libsub-install-perl (= 0.928-1),
libsub-name-perl (= 0.26-1+b1),
libsub-override-perl (= 0.09-2),
libswitch-perl (= 2.17-2),
libsystemd0 (= 246.6-2+rpi1),
libtasn1-6 (= 4.16.0-2),
libtcl8.6 (= 8.6.10+dfsg-1),
libthai-data (= 0.1.28-3),
libthai0 (= 0.1.28-3),
libtiff5 (= 4.1.0+git191117-2),
libtimedate-perl (= 2.3300-1),
libtinfo6 (= 6.2+20200918-1),
libtirpc-common (= 1.2.6-3),
libtirpc-dev (= 1.2.6-3),
libtirpc3 (= 1.2.6-3),
libtk8.6 (= 8.6.10-1),
libtool (= 2.4.6-14),
libtry-tiny-perl (= 0.30-1),
libubsan1 (= 10.2.0-16+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 246.6-2+rpi1),
libunistring2 (= 0.9.10-4),
liburi-perl (= 5.05-1),
libuuid1 (= 2.36-3),
libvariable-magic-perl (= 0.62-1+b3),
libwebp6 (= 0.6.1-2),
libwww-curl-perl (= 4.17-7+b1),
libwww-curl-simple-perl (= 0.100191-2),
libx11-6 (= 2:1.6.12-1),
libx11-data (= 2:1.6.12-1),
libxau6 (= 1:1.0.8-1+b2),
libxcb-render0 (= 1.14-2),
libxcb-shm0 (= 1.14-2),
libxcb1 (= 1.14-2),
libxdmcp6 (= 1:1.1.2-3),
libxext6 (= 2:1.3.3-1+b2),
libxft2 (= 2.3.2-2),
libxml2 (= 2.9.10+dfsg-6.2),
libxmuu1 (= 2:1.1.2-2+b3),
libxrender1 (= 1:0.9.10-1),
libxss1 (= 1:1.2.3-1),
libxt6 (= 1:1.2.0-1),
libzstd1 (= 1.4.5+dfsg-4+rpi1),
linux-libc-dev (= 5.7.10-1+rpi1),
littler (= 0.3.12-1),
login (= 1:4.8.1-1),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-4),
make (= 4.3-4),
man-db (= 2.9.3-2),
mawk (= 1.3.4.20200120-2),
ncurses-base (= 6.2+20200918-1),
ncurses-bin (= 6.2+20200918-1),
openssl (= 1.1.1h-1),
patch (= 2.7.6-6),
perl (= 5.32.0-5),
perl-base (= 5.32.0-5),
perl-modules-5.32 (= 5.32.0-5),
pkg-config (= 0.29.2-1),
po-debconf (= 1.0.21),
r-base-core (= 4.0.3-1),
r-base-dev (= 4.0.3-1),
r-bioc-annotate (= 1.68.0+dfsg-1),
r-bioc-annotationdbi (= 1.52.0-1),
r-bioc-biobase (= 2.50.0-1),
r-bioc-biocgenerics (= 0.36.0-1),
r-bioc-biocparallel (= 1.24.1-1),
r-bioc-edger (= 3.32.0+dfsg-1),
r-bioc-genefilter (= 1.72.0-1),
r-bioc-iranges (= 2.24.0-1),
r-bioc-limma (= 3.46.0+dfsg-1),
r-bioc-s4vectors (= 0.28.0-1),
r-cran-askpass (= 1.1-2),
r-cran-bh (= 1.66.0-1),
r-cran-bit (= 4.0.4+dfsg-1),
r-cran-bit64 (= 4.0.5-1),
r-cran-blob (= 1.2.1-2),
r-cran-curl (= 4.3+dfsg-1+b1),
r-cran-dbi (= 1.1.0-3),
r-cran-digest (= 0.6.27-1),
r-cran-ellipsis (= 0.3.1-1),
r-cran-formatr (= 1.7-2),
r-cran-futile.logger (= 1.4.3-4),
r-cran-futile.options (= 1.0.1-3),
r-cran-glue (= 1.4.2-1),
r-cran-httr (= 1.4.2-1),
r-cran-jsonlite (= 1.7.1+dfsg-1),
r-cran-lambda.r (= 1.2.4-2),
r-cran-lattice (= 0.20-41-1+b1),
r-cran-littler (= 0.3.12-1),
r-cran-locfit (= 1.5-9.4-2+b1),
r-cran-matrix (= 1.2-18-1+b1),
r-cran-matrixstats (= 0.57.0-1),
r-cran-memoise (= 1.1.0-3),
r-cran-mgcv (= 1.8-33-1),
r-cran-mime (= 0.9-1+b1),
r-cran-nlme (= 3.1.150-1),
r-cran-openssl (= 1.4.3+dfsg-1),
r-cran-pkgconfig (= 2.0.3-2),
r-cran-pkgkitten (= 0.2.0-1),
r-cran-plogr (= 0.2.0-3),
r-cran-r6 (= 2.5.0-1),
r-cran-rcpp (= 1.0.5-1),
r-cran-rlang (= 0.4.8-1),
r-cran-rsqlite (= 2.2.1-1),
r-cran-snow (= 1:0.4.3-2),
r-cran-survival (= 3.2-7-1),
r-cran-sys (= 3.4-1),
r-cran-vctrs (= 0.3.5-1),
r-cran-xml (= 3.99-0.5-1),
r-cran-xtable (= 1:1.8-4-2),
readline-common (= 8.1~rc2-2),
sed (= 4.7-1),
sensible-utils (= 0.0.12+nmu1),
sysvinit-utils (= 2.96-5),
tar (= 1.30+dfsg-7),
tzdata (= 2020d-1),
ucf (= 3.0043),
unzip (= 6.0-25),
util-linux (= 2.36-3),
x11-common (= 1:7.7+21),
xauth (= 1:1.0.10-1),
xdg-utils (= 1.1.3-2),
xz-utils (= 5.2.4-1),
zip (= 3.0-11),
zlib1g (= 1:1.2.11.dfsg-2),
zlib1g-dev (= 1:1.2.11.dfsg-2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1604402608"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-sva-dbgsym_3.38.0-1_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 3832 bytes: control archive=532 bytes.
377 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-sva-dbgsym
Source: r-bioc-sva
Version: 3.38.0-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 16
Depends: r-bioc-sva (= 3.38.0-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-sva
Build-Ids: ab10ac7531ecd64098f56cf28b90243459c43773
drwxr-xr-x root/root 0 2020-11-03 11:23 ./
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/lib/
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/lib/debug/.build-id/ab/
-rw-r--r-- root/root 5588 2020-11-03 11:23 ./usr/lib/debug/.build-id/ab/10ac7531ecd64098f56cf28b90243459c43773.debug
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/share/
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-11-03 11:23 ./usr/share/doc/r-bioc-sva-dbgsym -> r-bioc-sva
r-bioc-sva_3.38.0-1_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 446536 bytes: control archive=2448 bytes.
1707 bytes, 31 lines control
3813 bytes, 45 lines md5sums
Package: r-bioc-sva
Version: 3.38.0-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 958
Depends: r-base-core (>= 4.0.3-1), r-api-4.0, r-api-bioc-3.12, r-cran-mgcv, r-bioc-genefilter, r-bioc-biocparallel, r-cran-matrixstats, r-bioc-limma, r-bioc-edger
Recommends: r-cran-testthat, r-bioc-bladderbatch
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/sva/
Description: GNU R Surrogate Variable Analysis
The sva package contains functions for removing batch
effects and other unwanted variation in high-throughput
experiment. Specifically, the sva package contains functions
for the identifying and building surrogate variables for
high-dimensional data sets. Surrogate variables are covariates
constructed directly from high-dimensional data (like gene
expression/RNA sequencing/methylation/brain imaging data) that
can be used in subsequent analyses to adjust for unknown,
unmodeled, or latent sources of noise. The sva package can be
used to remove artifacts in three ways: (1) identifying and
estimating surrogate variables for unknown sources of variation
in high-throughput experiments (Leek and Storey 2007 PLoS
Genetics,2008 PNAS), (2) directly removing known batch
effects using ComBat (Johnson et al. 2007 Biostatistics) and (3) removing
batch effects with known control probes (Leek 2014 biorXiv).
Removing batch effects and using surrogate variables in
differential expression analysis have been shown to reduce
dependence, stabilize error rate estimates, and improve
reproducibility, see (Leek and Storey 2007 PLoS Genetics, 2008
PNAS or Leek et al. 2011 Nat. Reviews Genetics).
drwxr-xr-x root/root 0 2020-11-03 11:23 ./
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/lib/
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/lib/R/
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/lib/R/site-library/sva/
-rw-r--r-- root/root 2486 2020-11-03 11:23 ./usr/lib/R/site-library/sva/DESCRIPTION
-rw-r--r-- root/root 2253 2020-11-03 11:23 ./usr/lib/R/site-library/sva/INDEX
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/lib/R/site-library/sva/Meta/
-rw-r--r-- root/root 1005 2020-11-03 11:23 ./usr/lib/R/site-library/sva/Meta/Rd.rds
-rw-r--r-- root/root 122 2020-11-03 11:23 ./usr/lib/R/site-library/sva/Meta/features.rds
-rw-r--r-- root/root 996 2020-11-03 11:23 ./usr/lib/R/site-library/sva/Meta/hsearch.rds
-rw-r--r-- root/root 327 2020-11-03 11:23 ./usr/lib/R/site-library/sva/Meta/links.rds
-rw-r--r-- root/root 723 2020-11-03 11:23 ./usr/lib/R/site-library/sva/Meta/nsInfo.rds
-rw-r--r-- root/root 1794 2020-11-03 11:23 ./usr/lib/R/site-library/sva/Meta/package.rds
-rw-r--r-- root/root 237 2020-11-03 11:23 ./usr/lib/R/site-library/sva/Meta/vignette.rds
-rw-r--r-- root/root 1298 2020-11-03 11:23 ./usr/lib/R/site-library/sva/NAMESPACE
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/lib/R/site-library/sva/R/
-rw-r--r-- root/root 1058 2020-11-03 11:23 ./usr/lib/R/site-library/sva/R/sva
-rw-r--r-- root/root 74643 2020-11-03 11:23 ./usr/lib/R/site-library/sva/R/sva.rdb
-rw-r--r-- root/root 759 2020-11-03 11:23 ./usr/lib/R/site-library/sva/R/sva.rdx
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/lib/R/site-library/sva/doc/
-rw-r--r-- root/root 1278 2020-11-03 11:23 ./usr/lib/R/site-library/sva/doc/index.html
-rw-r--r-- root/root 7432 2020-11-03 11:23 ./usr/lib/R/site-library/sva/doc/sva.R
-rw-r--r-- root/root 26645 2020-11-03 11:23 ./usr/lib/R/site-library/sva/doc/sva.Rnw
-rw-r--r-- root/root 225412 2020-11-03 11:23 ./usr/lib/R/site-library/sva/doc/sva.pdf
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/lib/R/site-library/sva/extdata/
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/lib/R/site-library/sva/extdata/bwtool/
-rw-r--r-- root/root 65973 2020-11-03 11:23 ./usr/lib/R/site-library/sva/extdata/bwtool/SRR595926_degradeStats_polyA.txt
-rw-r--r-- root/root 64421 2020-11-03 11:23 ./usr/lib/R/site-library/sva/extdata/bwtool/SRR604050_degradeStats_polyA.txt
-rw-r--r-- root/root 65283 2020-11-03 11:23 ./usr/lib/R/site-library/sva/extdata/bwtool/SRR604098_degradeStats_polyA.txt
-rw-r--r-- root/root 61295 2020-11-03 11:23 ./usr/lib/R/site-library/sva/extdata/bwtool/SRR607214_degradeStats_polyA.txt
-rw-r--r-- root/root 64639 2020-11-03 11:23 ./usr/lib/R/site-library/sva/extdata/bwtool/SRR608456_degradeStats_polyA.txt
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/lib/R/site-library/sva/extdata/region_matrix_all/
-rw-r--r-- root/root 50378 2020-11-03 11:23 ./usr/lib/R/site-library/sva/extdata/region_matrix_all/gtex_5sample_region_matrix.txt
drwxr-xr-x root/root 0 2020-11-03 11:23 ./usr/lib/R/site-library/sva/extdata/region_matrix_one/
-rw-r--r-- root/root 29621 2020-11-03 11:23 ./usr/lib/R/site-library/sva/extdata/region_matrix_one/SRR595926.cov
-rw-r--r-- root/root 29316 2020-11-03 11:23 ./usr/lib/R/site-library/sva/extdata/region_matrix_one/SRR604050.cov
-rw-r--r-- root/root 29433 2020-11-03 11:23 ./usr/lib/R/site-library/sva/extdata/region_matrix_one/SRR604098.cov
-rw-r--r-- root/root 28188 2020-11-03 11:23 ./usr/lib/R/site-library/sva/extdata/region_matrix_one/SRR607214.cov
-rw-r--r-- root/root 29338 2020-11-03 11:23 ./usr/lib/R/site-library/sva/extdata/region_matrix_one/SRR608456.cov
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+------------------------------------------------------------------------------+
| Post Build |
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+------------------------------------------------------------------------------+
| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 2644
Build-Time: 57
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 982
Job: r-bioc-sva_3.38.0-1
Machine Architecture: armhf
Package: r-bioc-sva
Package-Time: 1064
Source-Version: 3.38.0-1
Space: 2644
Status: successful
Version: 3.38.0-1
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Finished at 2020-11-23T18:23:12Z
Build needed 00:17:44, 2644k disk space