r-bioc-scran →
1.24.1+dfsg-2 →
armhf → 2022-09-17 06:20:46
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| r-bioc-scran 1.24.1+dfsg-2 (armhf) Sat, 17 Sep 2022 05:58:37 +0000 |
+==============================================================================+
Package: r-bioc-scran
Version: 1.24.1+dfsg-2
Source Version: 1.24.1+dfsg-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-c14ab25e-ca45-4e7c-b98b-e5964c137db2' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.3 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.1 MB]
Fetched 27.4 MB in 10s (2846 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-scran' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-scran.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-scran.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 452 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-bioc-scran 1.24.1+dfsg-2 (dsc) [2455 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-bioc-scran 1.24.1+dfsg-2 (tar) [446 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-bioc-scran 1.24.1+dfsg-2 (diff) [3360 B]
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I: NOTICE: Log filtering will replace 'build/r-bioc-scran-bfYazk/r-bioc-scran-1.24.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-scran-bfYazk' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-EC9jGA/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-EC9jGA/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-EC9jGA/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-EC9jGA/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-EC9jGA/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-EC9jGA/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-EC9jGA/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-EC9jGA/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (7922 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-EC9jGA/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12805 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-singlecellexperiment, r-bioc-summarizedexperiment, r-bioc-s4vectors, r-bioc-biocgenerics, r-bioc-biocparallel, r-cran-rcpp, r-cran-matrix, r-bioc-edger, r-bioc-limma, r-cran-igraph, r-cran-statmod, r-bioc-delayedarray, r-bioc-delayedmatrixstats, r-bioc-biocsingular, r-cran-dqrng, r-bioc-beachmat, r-cran-bh, libpcg-cpp-dev, r-bioc-scuttle, r-bioc-bluster, r-bioc-metapod
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-singlecellexperiment, r-bioc-summarizedexperiment, r-bioc-s4vectors, r-bioc-biocgenerics, r-bioc-biocparallel, r-cran-rcpp, r-cran-matrix, r-bioc-edger, r-bioc-limma, r-cran-igraph, r-cran-statmod, r-bioc-delayedarray, r-bioc-delayedmatrixstats, r-bioc-biocsingular, r-cran-dqrng, r-bioc-beachmat, r-cran-bh, libpcg-cpp-dev, r-bioc-scuttle, r-bioc-bluster, r-bioc-metapod
dpkg-deb: building package 'sbuild-build-depends-r-bioc-scran-dummy' in '/<<BUILDDIR>>/resolver-EC9jGA/apt_archive/sbuild-build-depends-r-bioc-scran-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-scran-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-EC9jGA/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-EC9jGA/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-EC9jGA/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-EC9jGA/apt_archive ./ Sources [655 B]
Get:5 copy:/<<BUILDDIR>>/resolver-EC9jGA/apt_archive ./ Packages [741 B]
Fetched 2729 B in 0s (12.2 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-scran build dependencies (apt-based resolver)
------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-12 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-12-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu71
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev
libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcg-cpp-dev libpcre16-3
libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16
libpsl5 libreadline-dev libregexp-ipv6-perl librtmp1
libscalar-list-utils-perl libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db openssl pkg-config po-debconf r-base-core
r-base-dev r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics
r-bioc-biocneighbors r-bioc-biocparallel r-bioc-biocsingular r-bioc-bluster
r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-edger
r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics r-bioc-metapod
r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-scuttle
r-bioc-singlecellexperiment r-bioc-sparsematrixstats
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-bh
r-cran-bitops r-cran-cluster r-cran-codetools r-cran-dqrng r-cran-formatr
r-cran-futile.logger r-cran-futile.options r-cran-igraph r-cran-irlba
r-cran-lambda.r r-cran-lattice r-cran-littler r-cran-locfit r-cran-magrittr
r-cran-matrix r-cran-matrixstats r-cran-pkgconfig r-cran-pkgkitten
r-cran-rcpp r-cran-rcpphnsw r-cran-rcurl r-cran-rlang r-cran-rsvd
r-cran-sitmo r-cran-snow r-cran-statmod ucf unzip x11-common xauth xdg-utils
zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-12-doc libcoarrays-dev groff liblapack-doc
libboost-doc libboost1.74-doc libboost-atomic1.74-dev
libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev
libboost-contract1.74-dev libboost-coroutine1.74-dev
libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-program-options1.74-dev libboost-python1.74-dev
libboost-random1.74-dev libboost-regex1.74-dev
libboost-serialization1.74-dev libboost-stacktrace1.74-dev
libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6
tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libwww-perl
libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl
elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base
texlive-latex-base texlive-plain-generic texlive-fonts-recommended
texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
texlive-latex-extra texinfo r-cran-testthat r-bioc-biocstyle r-cran-knitr
r-cran-rmarkdown r-cran-rcmdcheck r-bioc-hdf5array r-bioc-all
r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy
r-bioc-deseq2 r-bioc-annotate r-cran-fnn r-cran-rcppannoy r-cran-foreach
r-cran-bbmisc r-bioc-variantannotation r-bioc-genomicalignments
r-bioc-shortread r-cran-data.table r-bioc-residualmatrix
r-cran-dynamictreecut r-bioc-scrnaseq r-bioc-scater r-bioc-scran
r-cran-pheatmap r-cran-viridis r-cran-kohonen r-cran-apcluster
r-bioc-genefilter r-cran-lobstr r-cran-runit r-cran-covr r-cran-profmem
r-cran-jsonlite r-cran-readr r-bioc-rhdf5 r-bioc-org.hs.eg.db
r-bioc-genomicfeatures r-bioc-bsgenome r-bioc-rtracklayer r-bioc-gviz
r-bioc-annotationhub r-bioc-dexseq r-bioc-keggrest r-cran-digest
r-cran-biasedurn r-cran-ellipse r-bioc-go.db r-cran-gplots r-cran-mass
r-bioc-graph r-cran-rtsne r-cran-bench r-cran-rstudioapi r-cran-shiny
r-cran-ape r-cran-rgl r-cran-scales r-cran-withr r-cran-getopt r-cran-interp
r-cran-gam r-cran-base64enc r-cran-ggplot2 r-cran-markdown r-cran-r.devices
r-cran-r.rsp r-cran-inline r-cran-xml r-cran-cli r-cran-crayon r-cran-fs
r-cran-glue r-cran-pillar r-cran-tibble r-cran-usethis r-cran-vctrs
r-cran-rmpi r-cran-rlecuyer
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs
r-cran-doparallel r-bioc-rsamtools r-cran-batchtools r-cran-rmpi
r-cran-testthat r-cran-testit r-cran-survival r-cran-crayon r-cran-rmarkdown
r-cran-ggplot2 r-cran-plyr r-cran-scales libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-12 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-12-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu71
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev
libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcg-cpp-dev libpcre16-3
libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16
libpsl5 libreadline-dev libregexp-ipv6-perl librtmp1
libscalar-list-utils-perl libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db openssl pkg-config po-debconf r-base-core
r-base-dev r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics
r-bioc-biocneighbors r-bioc-biocparallel r-bioc-biocsingular r-bioc-bluster
r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-edger
r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics r-bioc-metapod
r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-scuttle
r-bioc-singlecellexperiment r-bioc-sparsematrixstats
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-bh
r-cran-bitops r-cran-cluster r-cran-codetools r-cran-dqrng r-cran-formatr
r-cran-futile.logger r-cran-futile.options r-cran-igraph r-cran-irlba
r-cran-lambda.r r-cran-lattice r-cran-littler r-cran-locfit r-cran-magrittr
r-cran-matrix r-cran-matrixstats r-cran-pkgconfig r-cran-pkgkitten
r-cran-rcpp r-cran-rcpphnsw r-cran-rcurl r-cran-rlang r-cran-rsvd
r-cran-sitmo r-cran-snow r-cran-statmod
sbuild-build-depends-r-bioc-scran-dummy ucf unzip x11-common xauth xdg-utils
zip zlib1g-dev
0 upgraded, 225 newly installed, 0 to remove and 1 not upgraded.
Need to get 157 MB of archives.
After this operation, 499 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-EC9jGA/apt_archive ./ sbuild-build-depends-r-bioc-scran-dummy 0.invalid.0 [1020 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1 [137 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-2 [34.2 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-3 [1364 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.5-2 [1372 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-9 [171 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-9 [510 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.9.1 [196 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-3 [10.4 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-9 [1220 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.9.1 [1071 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-27 [152 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.8-1 [84.1 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-5 [272 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.4 [281 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.4 [331 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.6-1 [109 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.1-2 [308 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.1-2 [704 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-6 [496 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.49.0-1 [69.8 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.85.0-1 [325 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.73.3-3+rpi1 [1263 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-1+rpi1 [238 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.4 [416 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1+b1 [1420 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.9+ds-1 [214 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.9+ds-1 [68.6 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.9+ds-1 [58.3 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.12-1 [60.5 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-1 [121 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-4 [290 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.4-1 [50.2 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.2.1-2 [27.7 MB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-12-dev armhf 12.2.0-1+rpi1 [285 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf gfortran-12 armhf 12.2.0-1+rpi1 [7507 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:12.1.0-3+rpi1 [1428 B]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-2 [114 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.1-2 [2847 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3+20220423-2 [289 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3+20220423-2 [940 B]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.2~rc2-2 [122 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.40-1+b2 [208 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.40-1+b2 [200 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.40-1+b2 [53.7 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.40-1+b2 [637 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-14 [239 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-14 [232 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-14 [150 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-14 [569 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-5 [272 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2.1 [218 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 71.1-3 [177 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 71.1-3 [9799 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1.1-1 [36.9 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.2.1-2 [4488 B]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.27-1 [17.3 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-2 [13.5 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.12-1 [93.7 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.37-1 [80.9 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-1+b2 [24.5 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-2 [11.0 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2 [10.9 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-2 [13.1 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b3 [15.7 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-2 [24.5 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-1 [24.2 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libscalar-list-utils-perl armhf 1:1.62-1 [61.6 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-2 [14.3 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-2 [8044 B]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-2 [8500 B]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.15-1 [12.6 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-2 [12.0 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-2 [13.3 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-2 [16.8 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1 [18.2 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2200-1+b1 [802 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.62-2 [43.0 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-2 [11.6 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.85.0-1 [320 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-7+b2 [60.5 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-17 [9534 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b4 [4824 B]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libpcg-cpp-dev all 0.98.1-2 [21.3 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf r-cran-littler armhf 0.3.16-1 [95.4 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf littler all 0.3.16-1 [17.3 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.42.0-1 [589 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-45-3 [1176 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.4-1-1 [4290 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrixstats armhf 0.62.0-1 [449 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-matrixgenerics all 1.8.1-1 [300 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-s4vectors armhf 0.34.0-1 [2015 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-iranges armhf 2.30.1-1 [2214 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-delayedarray armhf 0.22.0+dfsg-1 [1923 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcpp armhf 1.0.9-1 [2036 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-beachmat armhf 2.12.0+ds-1 [136 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biobase armhf 2.56.0-1 [2094 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf r-cran-formatr all 1.12-1 [151 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf r-cran-codetools all 0.2-18-1 [91.8 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bh all 1.74.0-2 [5524 B]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocparallel armhf 1.30.3-1 [1451 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcpphnsw armhf 0.4.1+ds-1 [130 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocneighbors armhf 1.14.0+ds-1 [518 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-scaledmatrix all 1.4.0+dfsg-1 [306 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf r-cran-irlba armhf 2.3.5-1 [293 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rsvd all 1.0.5-1 [3589 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocsingular armhf 1.12.0+ds-1 [353 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cluster armhf 2.1.4-1 [563 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf r-cran-magrittr armhf 2.0.3-1 [200 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rlang armhf 1.0.4-1 [1623 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf r-cran-igraph armhf 1.3.4-1 [3321 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-bluster armhf 1.6.0+dfsg-1 [521 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-sparsematrixstats armhf 1.8.0+dfsg-1 [844 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-delayedmatrixstats all 1.18.0+ds-1 [434 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-limma armhf 3.52.2+dfsg-1 [1754 kB]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf r-cran-locfit armhf 1.5-9.6-1 [483 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-edger armhf 3.38.4+dfsg-1 [1089 kB]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcurl armhf 1.98-1.8+dfsg-1 [776 kB]
Get:214 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodbdata all 1.2.8-1 [11.5 MB]
Get:215 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodb all 1.32.4-1 [3890 kB]
Get:216 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-zlibbioc all 1.42.0+dfsg-1 [9136 B]
Get:217 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-xvector armhf 0.36.0-1 [617 kB]
Get:218 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomicranges armhf 1.48.0+dfsg-1 [1796 kB]
Get:219 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-metapod armhf 1.4.0+dfsg-1 [192 kB]
Get:220 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-summarizedexperiment all 1.26.1+dfsg-1 [2003 kB]
Get:221 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-singlecellexperiment all 1.18.0+ds-1 [821 kB]
Get:222 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-scuttle armhf 1.6.3+dfsg-1 [404 kB]
Get:223 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sitmo armhf 2.0.2-1 [126 kB]
Get:224 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dqrng armhf 0.3.0+dfsg-1 [116 kB]
Get:225 http://172.17.4.1/private bookworm-staging/main armhf r-cran-statmod armhf 1.4.37-1 [260 kB]
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Setting up libexpat1:armhf (2.4.8-1) ...
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Setting up libpipeline1:armhf (1.5.6-2) ...
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Setting up libboost1.74-dev:armhf (1.74.0-17) ...
Setting up liblerc4:armhf (4.0.0+ds-1) ...
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Setting up libdatrie1:armhf (0.2.13-2+b2) ...
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Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
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Regenerating fonts cache... done.
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Setting up r-base-core (4.2.1-2) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.20-45-3) ...
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Setting up r-cran-cluster (2.1.4-1) ...
Setting up r-cran-statmod (1.4.37-1) ...
Setting up r-cran-pkgkitten (0.2.2-2) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.8-1) ...
Setting up r-cran-littler (0.3.16-1) ...
Setting up r-cran-rcpp (1.0.9-1) ...
Setting up r-cran-codetools (0.2-18-1) ...
Setting up r-bioc-biocgenerics (0.42.0-1) ...
Setting up r-cran-rlang (1.0.4-1) ...
Setting up r-cran-matrixstats (0.62.0-1) ...
Setting up r-base-dev (4.2.1-2) ...
Setting up littler (0.3.16-1) ...
Setting up r-bioc-matrixgenerics (1.8.1-1) ...
Setting up r-cran-rcpphnsw (0.4.1+ds-1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-bioc-zlibbioc (1.42.0+dfsg-1) ...
Setting up r-bioc-biobase (2.56.0-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-sitmo (2.0.2-1) ...
Setting up r-bioc-s4vectors (0.34.0-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up r-bioc-limma (3.52.2+dfsg-1) ...
Setting up r-cran-matrix (1.4-1-1) ...
Setting up r-cran-irlba (2.3.5-1) ...
Setting up r-bioc-iranges (2.30.1-1) ...
Setting up r-cran-dqrng (0.3.0+dfsg-1) ...
Setting up r-bioc-metapod (1.4.0+dfsg-1) ...
Setting up dh-r (20210816) ...
Setting up r-cran-rcurl (1.98-1.8+dfsg-1) ...
Setting up r-bioc-sparsematrixstats (1.8.0+dfsg-1) ...
Setting up r-bioc-delayedarray (0.22.0+dfsg-1) ...
Setting up r-bioc-biocparallel (1.30.3-1) ...
Setting up r-bioc-edger (3.38.4+dfsg-1) ...
Setting up r-bioc-delayedmatrixstats (1.18.0+ds-1) ...
Setting up r-cran-igraph (1.3.4-1) ...
Setting up r-cran-rsvd (1.0.5-1) ...
Setting up r-bioc-genomeinfodb (1.32.4-1) ...
Setting up r-bioc-beachmat (2.12.0+ds-1) ...
Setting up r-bioc-xvector (0.36.0-1) ...
Setting up r-bioc-scaledmatrix (1.4.0+dfsg-1) ...
Setting up r-bioc-biocneighbors (1.14.0+ds-1) ...
Setting up r-bioc-biocsingular (1.12.0+ds-1) ...
Setting up r-bioc-genomicranges (1.48.0+dfsg-1) ...
Setting up r-bioc-bluster (1.6.0+dfsg-1) ...
Setting up r-bioc-summarizedexperiment (1.26.1+dfsg-1) ...
Setting up r-bioc-singlecellexperiment (1.18.0+ds-1) ...
Setting up r-bioc-scuttle (1.6.3+dfsg-1) ...
Setting up sbuild-build-depends-r-bioc-scran-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.34-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.38.90.20220713-2+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-1+rpi1 gcc-12_12.2.0-1+rpi1 libc6-dev_2.34-7+rpi1 libstdc++-12-dev_12.2.0-1+rpi1 libstdc++6_12.2.0-1+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.6.0 bash_5.2~rc2-2 binutils_2.38.90.20220713-2+rpi1 binutils-arm-linux-gnueabihf_2.38.90.20220713-2+rpi1 binutils-common_2.38.90.20220713-2+rpi1 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_8.32-4.1 cpp_4:12.1.0-3+rpi1 cpp-12_12.2.0-1+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 dctrl-tools_2.24-3 debconf_1.5.79 debhelper_13.9.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig_2.13.1-4.4 fontconfig-config_2.13.1-4.4 fonts-dejavu-core_2.37-2 g++_4:12.1.0-3+rpi1 g++-12_12.2.0-1+rpi1 gcc_4:12.1.0-3+rpi1 gcc-12_12.2.0-1+rpi1 gcc-12-base_12.2.0-1+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-9 gettext-base_0.21-9 gfortran_4:12.1.0-3+rpi1 gfortran-12_12.2.0-1+rpi1 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 icu-devtools_71.1-3 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libalgorithm-c3-perl_0.11-1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libasan8_12.2.0-1+rpi1 libassuan0_2.5.5-4 libatomic1_12.2.0-1+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2 libbinutils_2.38.90.20220713-2+rpi1 libblas-dev_3.10.1-2 libblas3_3.10.1-2 libblkid1_2.38.1-1 libboost-dev_1.74.0.3+b4 libboost1.74-dev_1.74.0-17 libbrotli1_1.0.9-2+b2 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libsub-exporter-perl_0.988-1 libsub-exporter-progressive-perl_0.001013-2 libsub-identify-perl_0.14-2 libsub-install-perl_0.928-2 libsub-name-perl_0.26-2 libsub-override-perl_0.09-3 libswitch-perl_2.17-3 libsystemd0_251.3-1+rpi1 libtasn1-6_4.18.0-4 libtcl8.6_8.6.12+dfsg-1 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff5_4.4.0-4 libtimedate-perl_2.3300-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.12-1 libtool_2.4.7-4 libtry-tiny-perl_0.31-1 libubsan1_12.2.0-1+rpi1 libuchardet0_0.0.7-1 libudev1_251.3-1+rpi1 libunistring2_1.0-1 liburi-perl_5.12-1 libuuid1_2.38.1-1 libvariable-magic-perl_0.62-2 libwebp7_1.2.2-2 libwww-curl-perl_4.17-7+b2 libwww-curl-simple-perl_0.100191-3 libx11-6_2:1.8.1-2 libx11-data_2:1.8.1-2 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.4-1 libxml2_2.9.14+dfsg-1 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 littler_0.3.16-1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.2+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.10.2-3 mawk_1.3.4.20200120-3.1 mount_2.38.1-1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 openssl_3.0.5-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 pinentry-curses_1.2.0-2 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 r-base-core_4.2.1-2 r-base-dev_4.2.1-2 r-bioc-beachmat_2.12.0+ds-1 r-bioc-biobase_2.56.0-1 r-bioc-biocgenerics_0.42.0-1 r-bioc-biocneighbors_1.14.0+ds-1 r-bioc-biocparallel_1.30.3-1 r-bioc-biocsingular_1.12.0+ds-1 r-bioc-bluster_1.6.0+dfsg-1 r-bioc-delayedarray_0.22.0+dfsg-1 r-bioc-delayedmatrixstats_1.18.0+ds-1 r-bioc-edger_3.38.4+dfsg-1 r-bioc-genomeinfodb_1.32.4-1 r-bioc-genomeinfodbdata_1.2.8-1 r-bioc-genomicranges_1.48.0+dfsg-1 r-bioc-iranges_2.30.1-1 r-bioc-limma_3.52.2+dfsg-1 r-bioc-matrixgenerics_1.8.1-1 r-bioc-metapod_1.4.0+dfsg-1 r-bioc-s4vectors_0.34.0-1 r-bioc-scaledmatrix_1.4.0+dfsg-1 r-bioc-scuttle_1.6.3+dfsg-1 r-bioc-singlecellexperiment_1.18.0+ds-1 r-bioc-sparsematrixstats_1.8.0+dfsg-1 r-bioc-summarizedexperiment_1.26.1+dfsg-1 r-bioc-xvector_0.36.0-1 r-bioc-zlibbioc_1.42.0+dfsg-1 r-cran-bh_1.74.0-2 r-cran-bitops_1.0-7-1 r-cran-cluster_2.1.4-1 r-cran-codetools_0.2-18-1 r-cran-dqrng_0.3.0+dfsg-1 r-cran-formatr_1.12-1 r-cran-futile.logger_1.4.3-4 r-cran-futile.options_1.0.1-3 r-cran-igraph_1.3.4-1 r-cran-irlba_2.3.5-1 r-cran-lambda.r_1.2.4-2 r-cran-lattice_0.20-45-3 r-cran-littler_0.3.16-1 r-cran-locfit_1.5-9.6-1 r-cran-magrittr_2.0.3-1 r-cran-matrix_1.4-1-1 r-cran-matrixstats_0.62.0-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.2-2 r-cran-rcpp_1.0.9-1 r-cran-rcpphnsw_0.4.1+ds-1 r-cran-rcurl_1.98-1.8+dfsg-1 r-cran-rlang_1.0.4-1 r-cran-rsvd_1.0.5-1 r-cran-sitmo_2.0.2-1 r-cran-snow_1:0.4.4-2 r-cran-statmod_1.4.37-1 raspbian-archive-keyring_20120528.2 readline-common_8.2~rc2-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-scran-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sysvinit-utils_3.04-1 tar_1.34+dfsg-1 tzdata_2022c-1 ucf_3.0043 unzip_6.0-27 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 x11-common_1:7.7+23 xauth_1:1.1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2.1 zip_3.0-12 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.pngZd3rF/trustedkeys.kbx': General error
gpgv: Signature made Wed Sep 14 15:50:37 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./r-bioc-scran_1.24.1+dfsg-2.dsc
dpkg-source: info: extracting r-bioc-scran in /<<BUILDDIR>>/r-bioc-scran-1.24.1+dfsg
dpkg-source: info: unpacking r-bioc-scran_1.24.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-scran_1.24.1+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying i386
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-c14ab25e-ca45-4e7c-b98b-e5964c137db2
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-scran
dpkg-buildpackage: info: source version 1.24.1+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-scran/ -a -O--buildsystem=R
I: R Package: scran Version: 1.24.1
I: Building using R version 4.2.1-2
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Wed, 14 Sep 2022 14:38:46 +0200
mkdir -p /<<BUILDDIR>>/r-bioc-scran-1.24.1\+dfsg/debian/r-bioc-scran/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-scran-1.24.1\+dfsg/debian/r-bioc-scran/usr/lib/R/site-library --clean . "--built-timestamp='Wed, 14 Sep 2022 14:38:46 +0200'"
* installing *source* package 'scran' ...
** using staged installation
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-scran-1.24.1+dfsg/src'
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c choose_effect_size.cpp -o choose_effect_size.o
In file included from /usr/include/c++/12/algorithm:61,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:64,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from choose_effect_size.cpp:1:
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator<pair<double, double>*, vector<pair<double, double> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
82 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b,
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:82:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<double, double>*, vector<pair<double, double> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
1782 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_algo.h:60:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<double, double>*, vector<pair<double, double> > >; _Distance = int; _Tp = pair<double, double>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<double, double>*, vector<pair<double, double> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1625:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
1625 | __heap_select(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1625:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1625:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
In function 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<double, double>*, vector<pair<double, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::nth_element(_RAIter, _RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<double, double>*, vector<pair<double, double> > >]' at /usr/include/c++/12/bits/stl_algo.h:4747:25,
inlined from 'Rcpp::NumericVector choose_middle_effect_size(Rcpp::List, Rcpp::List, double)' at choose_effect_size.cpp:91:29:
/usr/include/c++/12/bits/stl_algo.h:1955:33: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
1955 | std::__heap_select(__first, __nth + 1, __last, __comp);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<double, double>*, vector<pair<double, double> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<pair<double, double>*, vector<pair<double, double> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1962:38,
inlined from 'void std::nth_element(_RAIter, _RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<pair<double, double>*, vector<pair<double, double> > >]' at /usr/include/c++/12/bits/stl_algo.h:4747:25,
inlined from 'Rcpp::NumericVector choose_middle_effect_size(Rcpp::List, Rcpp::List, double)' at choose_effect_size.cpp:91:29:
/usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
1887 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1888 | __comp);
| ~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1887:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >' changed in GCC 7.1
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c combine_rho.cpp -o combine_rho.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c compute_blocked_stats.cpp -o compute_blocked_stats.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c compute_residual_stats.cpp -o compute_residual_stats.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c compute_rho_null.cpp -o compute_rho_null.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c cyclone_scores.cpp -o cyclone_scores.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c overlap_exprs.cpp -o overlap_exprs.o
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:64,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from overlap_exprs.cpp:1:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void wilcoxer::initialize(const double*)' at overlap_exprs.cpp:57:22:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, vector<double> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<double*, vector<double> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void wilcoxer::initialize(const double*)' at overlap_exprs.cpp:57:22:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/beachmat/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/dqrng/include' -I'/usr/lib/R/site-library/scuttle/include' -ffloat-store -fpic -g -O2 -ffile-prefix-map=/build/r-base-4VWuKj/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rand_custom.cpp -o rand_custom.o
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o scran.so RcppExports.o choose_effect_size.o combine_rho.o compute_blocked_stats.o compute_residual_stats.o compute_rho_null.o cyclone_scores.o overlap_exprs.o rand_custom.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-scran-1.24.1+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-scran-1.24.1+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-scran-1.24.1+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-scran-1.24.1+dfsg/debian/r-bioc-scran/usr/lib/R/site-library/00LOCK-r-bioc-scran-1.24.1+dfsg/00new/scran/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scran)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 301.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 304.
I: Using r-bioc-singlecellexperiment for Depends:SingleCellExperiment
I: Using r-bioc-scuttle for Depends:scuttle
I: Using r-cran-testthat for Suggests:testthat
I: Using r-bioc-biocstyle for Suggests:BiocStyle
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-bioc-hdf5array for Suggests:HDF5Array
I: Using r-bioc-scrnaseq for Suggests:scRNAseq
I: Using r-cran-dynamictreecut for Suggests:dynamicTreeCut
I: Using r-bioc-residualmatrix for Suggests:ResidualMatrix
I: Using r-bioc-scaledmatrix for Suggests:ScaledMatrix
I: Using r-bioc-deseq2 for Suggests:DESeq2
I: Using r-bioc-monocle for Suggests:monocle
I: Using r-bioc-biobase for Suggests:Biobase
I: Using r-cran-pheatmap for Suggests:pheatmap
I: Using r-bioc-scater for Suggests:scater
I: Using r-bioc-summarizedexperiment for Imports:SummarizedExperiment
I: Using r-bioc-s4vectors for Imports:S4Vectors
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
I: Using r-bioc-biocparallel for Imports:BiocParallel
I: Using r-cran-rcpp for Imports:Rcpp
I: Using r-cran-matrix for Imports:Matrix
I: Using r-bioc-edger for Imports:edgeR
I: Using r-bioc-limma for Imports:limma
I: Using r-cran-igraph for Imports:igraph
I: Using r-cran-statmod for Imports:statmod
I: Using r-bioc-delayedarray for Imports:DelayedArray
I: Using r-bioc-delayedmatrixstats for Imports:DelayedMatrixStats
I: Using r-bioc-biocsingular for Imports:BiocSingular
I: Using r-bioc-bluster for Imports:bluster
I: Using r-bioc-metapod for Imports:metapod
I: Using r-cran-dqrng for Imports:dqrng
I: Using r-bioc-beachmat for Imports:beachmat
I: Using r-cran-rcpp for LinkingTo:Rcpp
I: Using r-bioc-beachmat for LinkingTo:beachmat
I: Using r-cran-bh for LinkingTo:BH
I: Using r-cran-dqrng for LinkingTo:dqrng
I: Using r-bioc-scuttle for LinkingTo:scuttle
I: BioConductor API version: r-api-bioc-3.15
I: Use r-bioc-scran as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-scran-dbgsym' in '../r-bioc-scran-dbgsym_1.24.1+dfsg-2_armhf.deb'.
dpkg-deb: building package 'r-bioc-scran' in '../r-bioc-scran_1.24.1+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-bioc-scran_1.24.1+dfsg-2_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../r-bioc-scran_1.24.1+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-09-17T06:20:42Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-scran_1.24.1+dfsg-2_armhf.changes:
-----------------------------------------
Format: 1.8
Date: Wed, 14 Sep 2022 14:38:46 +0200
Source: r-bioc-scran
Binary: r-bioc-scran r-bioc-scran-dbgsym
Architecture: armhf
Version: 1.24.1+dfsg-2
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-scran - BioConductor methods for single-cell RNA-Seq data analysis
Changes:
r-bioc-scran (1.24.1+dfsg-2) unstable; urgency=medium
.
* Disable reprotest
* Sync Test-Depends with Suggests from DESCRIPTION
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-scran-dbgsym_1.24.1+dfsg-2_armhf.deb
-------------------------------------------
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lrwxrwxrwx root/root 0 2022-09-14 12:38 ./usr/share/doc/r-bioc-scran-dbgsym -> r-bioc-scran
r-bioc-scran_1.24.1+dfsg-2_armhf.deb
------------------------------------
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1428 bytes, 16 lines control
2416 bytes, 31 lines md5sums
Package: r-bioc-scran
Version: 1.24.1+dfsg-2
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 1350
Depends: r-base-core (>= 4.2.1-2), r-api-4.0, r-api-bioc-3.15, r-bioc-singlecellexperiment, r-bioc-scuttle, r-bioc-summarizedexperiment, r-bioc-s4vectors, r-bioc-biocgenerics, r-bioc-biocparallel, r-cran-rcpp, r-cran-matrix, r-bioc-edger, r-bioc-limma, r-cran-igraph, r-cran-statmod, r-bioc-delayedarray, r-bioc-delayedmatrixstats, r-bioc-biocsingular, r-bioc-bluster, r-bioc-metapod, r-cran-dqrng, r-bioc-beachmat, r-cran-bh, libc6 (>= 2.29), libgcc-s1 (>= 3.5), liblapack3 | liblapack.so.3, libstdc++6 (>= 11)
Suggests: r-cran-testthat, r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-bioc-hdf5array, r-bioc-scrnaseq, r-cran-dynamictreecut, r-bioc-residualmatrix, r-bioc-scaledmatrix, r-bioc-deseq2, r-bioc-monocle, r-bioc-biobase, r-cran-pheatmap, r-bioc-scater
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/scran/
Description: BioConductor methods for single-cell RNA-Seq data analysis
Implements functions for low-level analyses of single-cell RNA-seq data.
Methods are provided for normalization of cell-specific biases,
assignment of cell cycle phase, detection of highly variable and
significantly correlated genes, identification of marker genes, and
other common tasks in routine single-cell analysis workflows.
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Build Architecture: armhf
Build-Space: 8980
Build-Time: 308
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 999
Job: r-bioc-scran_1.24.1+dfsg-2
Machine Architecture: armhf
Package: r-bioc-scran
Package-Time: 1325
Source-Version: 1.24.1+dfsg-2
Space: 8980
Status: successful
Version: 1.24.1+dfsg-2
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Finished at 2022-09-17T06:20:42Z
Build needed 00:22:05, 8980k disk space