r-bioc-rsubread →
2.6.4-1 →
armhf → 2021-11-23 04:07:29
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| r-bioc-rsubread 2.6.4-1 (armhf) Tue, 23 Nov 2021 03:54:35 +0000 |
+==============================================================================+
Package: r-bioc-rsubread
Version: 2.6.4-1
Source Version: 2.6.4-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-3c979d82-66ab-4d8d-8b86-f488a558eb00' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.5 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.5 MB]
Fetched 26.0 MB in 9s (2783 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-rsubread' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-rsubread.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-rsubread.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 10.9 MB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main r-bioc-rsubread 2.6.4-1 (dsc) [2090 B]
Get:2 http://172.17.0.1/private bookworm-staging/main r-bioc-rsubread 2.6.4-1 (tar) [10.9 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main r-bioc-rsubread 2.6.4-1 (diff) [3600 B]
Fetched 10.9 MB in 3s (3685 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-rsubread-cEp2R9/r-bioc-rsubread-2.6.4' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-rsubread-cEp2R9' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-3MYyT2/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-3MYyT2/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-3MYyT2/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3MYyT2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3MYyT2/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3MYyT2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-3MYyT2/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3MYyT2/apt_archive ./ Packages [430 B]
Fetched 2106 B in 0s (9525 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 34 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3MYyT2/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (63.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12500 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-matrix
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-matrix
dpkg-deb: building package 'sbuild-build-depends-r-bioc-rsubread-dummy' in '/<<BUILDDIR>>/resolver-3MYyT2/apt_archive/sbuild-build-depends-r-bioc-rsubread-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-rsubread-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3MYyT2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3MYyT2/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3MYyT2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-3MYyT2/apt_archive ./ Sources [515 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3MYyT2/apt_archive ./ Packages [598 B]
Fetched 2446 B in 0s (11.5 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-rsubread build dependencies (apt-based resolver)
---------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates cpp
cpp-11 dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core g++ g++-11 gcc gcc-11
gettext gettext-base gfortran gfortran-11 groff-base icu-devtools
intltool-debian libalgorithm-c3-perl libarchive-zip-perl
libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-11-dev
libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libncursesw6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-8-0 libpcre2-dev libpcre2-posix3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16
libpsl5 libreadline-dev librtmp1 libscalar-list-utils-perl libsigsegv2
libsm6 libssh2-1 libstdc++-11-dev libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtinfo6 libtk8.6 libtool
libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6
libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db ncurses-bin openssl pkg-config
po-debconf r-base-core r-base-dev r-cran-lattice r-cran-matrix
sensible-utils ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-11-locales debtags
dh-make postgresql-client-common gcc-11-doc gcc-multilib manpages-dev flex
bison gdb gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc
gfortran-11-doc libcoarrays-dev groff liblapack-doc icu-doc liblzma-doc
ncurses-doc libscalar-number-perl readline-doc libstdc++-11-doc tcl8.6 tk8.6
libtool-doc gcj-jdk libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev
m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info
| r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
cpp-11 dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core g++-11 gcc-11 gettext
gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev
libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl
libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl
libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgcc-11-dev libgfortran-11-dev libgfortran5
libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
libscalar-list-utils-perl libsigsegv2 libsm6 libssh2-1 libstdc++-11-dev
libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6
libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config po-debconf
r-base-core r-base-dev r-cran-lattice r-cran-matrix
sbuild-build-depends-r-bioc-rsubread-dummy sensible-utils ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp g++ gcc libncursesw6 libpcre2-8-0 libtinfo6 ncurses-bin
7 upgraded, 176 newly installed, 0 to remove and 27 not upgraded.
Need to get 267 MB of archives.
After this operation, 823 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3MYyT2/apt_archive ./ sbuild-build-depends-r-bioc-rsubread-dummy 0.invalid.0 [888 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf libtinfo6 armhf 6.3-1 [335 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf ncurses-bin armhf 6.3-1 [431 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf libncursesw6 armhf 6.3-1 [105 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-4 [135 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.4-1 [31.6 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-8-0 armhf 10.39-2 [213 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf openssl armhf 1.1.1l-1 [815 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf cpp-11 armhf 11.2.0-10+rpi1 [42.3 MB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libgcc-11-dev armhf 11.2.0-10+rpi1 [697 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf gcc-11 armhf 11.2.0-10+rpi1 [48.3 MB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf g++ armhf 4:11.2.0-2+rpi1 [1636 B]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf gcc armhf 4:11.2.0-2+rpi1 [5192 B]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libstdc++-11-dev armhf 11.2.0-10+rpi1 [1956 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf g++-11 armhf 11.2.0-10+rpi1 [46.1 MB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf cpp armhf 4:11.2.0-2+rpi1 [20.1 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-2 [26.3 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-2 [15.5 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf unzip armhf 6.0-26 [151 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-1 [108 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-3 [80.1 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libfreetype6 armhf 2.11.0+dfsg-1 [386 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf libcurl4 armhf 7.79.1-2 [320 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.1-1 [1210 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-10+rpi1 [234 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-1 [1594 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf libthai-data all 0.1.28-4.1 [171 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2 [39.7 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf libthai0 armhf 0.1.28-4.1 [51.4 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.48.10+ds1-1 [184 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.48.10+ds1-1 [66.6 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.48.10+ds1-1 [56.8 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.8-1 [44.1 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-2 [272 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:102 http://172.17.0.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:103 http://172.17.0.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:104 http://172.17.0.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:105 http://172.17.0.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:106 http://172.17.0.1/private bookworm-staging/main armhf r-base-core armhf 4.1.2-1 [25.4 MB]
Get:107 http://172.17.0.1/private bookworm-staging/main armhf libgfortran-11-dev armhf 11.2.0-10+rpi1 [280 kB]
Get:108 http://172.17.0.1/private bookworm-staging/main armhf gfortran-11 armhf 11.2.0-10+rpi1 [43.8 MB]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf gfortran armhf 4:11.2.0-2+rpi1 [1428 B]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.0-1 [113 kB]
Get:111 http://172.17.0.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.0-1 [2872 kB]
Get:112 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.3-1 [79.8 kB]
Get:113 http://172.17.0.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3-1 [290 kB]
Get:114 http://172.17.0.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3-1 [932 B]
Get:115 http://172.17.0.1/private bookworm-staging/main armhf libreadline-dev armhf 8.1-2 [121 kB]
Get:116 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.6-4 [240 kB]
Get:117 http://172.17.0.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.0.6-4 [67.8 kB]
Get:118 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.39-2 [200 kB]
Get:119 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.39-2 [190 kB]
Get:120 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.39-2 [51.8 kB]
Get:121 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.39-2 [629 kB]
Get:122 http://172.17.0.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:123 http://172.17.0.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:124 http://172.17.0.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:125 http://172.17.0.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:126 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:127 http://172.17.0.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:128 http://172.17.0.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:129 http://172.17.0.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2 [219 kB]
Get:130 http://172.17.0.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:131 http://172.17.0.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:132 http://172.17.0.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:133 http://172.17.0.1/private bookworm-staging/main armhf xauth armhf 1:1.1-1 [36.6 kB]
Get:134 http://172.17.0.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:135 http://172.17.0.1/private bookworm-staging/main armhf r-base-dev all 4.1.2-1 [4484 B]
Get:136 http://172.17.0.1/private bookworm-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:137 http://172.17.0.1/private bookworm-staging/main armhf libswitch-perl all 2.17-2.1 [20.0 kB]
Get:138 http://172.17.0.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:139 http://172.17.0.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:140 http://172.17.0.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:141 http://172.17.0.1/private bookworm-staging/main armhf libio-html-perl all 1.004-2 [16.1 kB]
Get:142 http://172.17.0.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:143 http://172.17.0.1/private bookworm-staging/main armhf liburi-perl all 5.10-1 [91.0 kB]
Get:144 http://172.17.0.1/private bookworm-staging/main armhf libhttp-message-perl all 6.35-1 [80.5 kB]
Get:145 http://172.17.0.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB]
Get:146 http://172.17.0.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:147 http://172.17.0.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:148 http://172.17.0.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:149 http://172.17.0.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:150 http://172.17.0.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:151 http://172.17.0.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:152 http://172.17.0.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:153 http://172.17.0.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:154 http://172.17.0.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get:155 http://172.17.0.1/private bookworm-staging/main armhf libscalar-list-utils-perl armhf 1:1.59-1 [60.8 kB]
Get:156 http://172.17.0.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.39-1 [21.9 kB]
Get:157 http://172.17.0.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:158 http://172.17.0.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b4 [14.3 kB]
Get:159 http://172.17.0.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:160 http://172.17.0.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get:161 http://172.17.0.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:162 http://172.17.0.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:163 http://172.17.0.1/private bookworm-staging/main armhf libmro-compat-perl all 0.13-1 [12.2 kB]
Get:164 http://172.17.0.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:165 http://172.17.0.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:166 http://172.17.0.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:167 http://172.17.0.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:168 http://172.17.0.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get:169 http://172.17.0.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get:170 http://172.17.0.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB]
Get:171 http://172.17.0.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get:172 http://172.17.0.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.5 kB]
Get:173 http://172.17.0.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2200-1 [803 kB]
Get:174 http://172.17.0.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB]
Get:175 http://172.17.0.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.25-1 [19.5 kB]
Get:176 http://172.17.0.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB]
Get:177 http://172.17.0.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:178 http://172.17.0.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.79.1-2 [317 kB]
Get:179 http://172.17.0.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-7+b1 [58.9 kB]
Get:180 http://172.17.0.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:181 http://172.17.0.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:182 http://172.17.0.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-45-1 [1176 kB]
Get:183 http://172.17.0.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.3-4-2 [3573 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 267 MB in 59s (4525 kB/s)
(Reading database ... 12500 files and directories currently installed.)
Preparing to unpack .../libtinfo6_6.3-1_armhf.deb ...
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Setting up libtinfo6:armhf (6.3-1) ...
(Reading database ... 12500 files and directories currently installed.)
Preparing to unpack .../ncurses-bin_6.3-1_armhf.deb ...
Unpacking ncurses-bin (6.3-1) over (6.2+20201114-4) ...
Setting up ncurses-bin (6.3-1) ...
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Unpacking libncursesw6:armhf (6.3-1) over (6.2+20201114-4) ...
Setting up libncursesw6:armhf (6.3-1) ...
Selecting previously unselected package bsdextrautils.
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Preparing to unpack .../0-bsdextrautils_2.37.2-4_armhf.deb ...
Unpacking bsdextrautils (2.37.2-4) ...
Selecting previously unselected package libuchardet0:armhf.
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Unpacking libuchardet0:armhf (0.0.7-1) ...
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Unpacking groff-base (1.22.4-7) ...
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Unpacking man-db (2.9.4-2) ...
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Unpacking libpcre2-8-0:armhf (10.39-2) over (10.36-2) ...
Setting up libpcre2-8-0:armhf (10.39-2) ...
Selecting previously unselected package sensible-utils.
(Reading database ... 13073 files and directories currently installed.)
Preparing to unpack .../000-sensible-utils_0.0.17_all.deb ...
Unpacking sensible-utils (0.0.17) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../001-libmagic-mgc_1%3a5.41-2_armhf.deb ...
Unpacking libmagic-mgc (1:5.41-2) ...
Selecting previously unselected package libmagic1:armhf.
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Unpacking libmagic1:armhf (1:5.41-2) ...
Selecting previously unselected package file.
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Unpacking file (1:5.41-2) ...
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Unpacking gettext-base (0.21-4) ...
Selecting previously unselected package ucf.
Preparing to unpack .../005-ucf_3.0043_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0043) ...
Selecting previously unselected package libsigsegv2:armhf.
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Unpacking libsigsegv2:armhf (2.13-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../007-m4_1.4.18-5_armhf.deb ...
Unpacking m4 (1.4.18-5) ...
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Unpacking autoconf (2.71-2) ...
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Unpacking automake (1:1.16.5-1.1) ...
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Selecting previously unselected package openssl.
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Unpacking openssl (1.1.1l-1) ...
Selecting previously unselected package ca-certificates.
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Unpacking ca-certificates (20210119) ...
Selecting previously unselected package cpp-11.
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Unpacking cpp-11 (11.2.0-10+rpi1) ...
Selecting previously unselected package libgcc-11-dev:armhf.
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Unpacking libgcc-11-dev:armhf (11.2.0-10+rpi1) ...
Selecting previously unselected package gcc-11.
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Unpacking gcc-11 (11.2.0-10+rpi1) ...
Preparing to unpack .../017-g++_4%3a11.2.0-2+rpi1_armhf.deb ...
Unpacking g++ (4:11.2.0-2+rpi1) over (4:10.2.1-1+rpi1) ...
Preparing to unpack .../018-gcc_4%3a11.2.0-2+rpi1_armhf.deb ...
Unpacking gcc (4:11.2.0-2+rpi1) over (4:10.2.1-1+rpi1) ...
Selecting previously unselected package libstdc++-11-dev:armhf.
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Unpacking libstdc++-11-dev:armhf (11.2.0-10+rpi1) ...
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Unpacking g++-11 (11.2.0-10+rpi1) ...
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Unpacking cpp (4:11.2.0-2+rpi1) over (4:10.2.1-1+rpi1) ...
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Unpacking dctrl-tools (2.24-3) ...
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Unpacking libdebhelper-perl (13.5.2) ...
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Unpacking libtool (2.4.6-15) ...
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Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
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Unpacking libarchive-zip-perl (1.68-1) ...
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Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
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Unpacking libfile-stripnondeterminism-perl (1.12.0-2) ...
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Unpacking dh-strip-nondeterminism (1.12.0-2) ...
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Unpacking libelf1:armhf (0.185-2) ...
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Selecting previously unselected package libicu67:armhf.
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Unpacking libicu67:armhf (67.1-7) ...
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Unpacking libxml2:armhf (2.9.12+dfsg-5) ...
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Setting up libexpat1:armhf (2.4.1-3) ...
Setting up libpcrecpp0v5:armhf (2:8.39-13) ...
Setting up libpipeline1:armhf (1.5.4-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up cpp-11 (11.2.0-10+rpi1) ...
Setting up libpixman-1-0:armhf (0.40.0-1) ...
Setting up libfile-which-perl (1.23-1) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up bsdextrautils (2.37.2-4) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libpcre16-3:armhf (2:8.39-13) ...
Setting up libicu67:armhf (67.1-7) ...
Setting up libdynaloader-functions-perl (0.003-1.1) ...
Setting up libdatrie1:armhf (0.2.13-2) ...
Setting up libmagic-mgc (1:5.41-2) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-1+b3) ...
Setting up libglib2.0-0:armhf (2.70.1-1) ...
No schema files found: doing nothing.
Setting up libscalar-list-utils-perl (1:1.59-1) ...
Setting up unzip (6.0-26) ...
Setting up libdebhelper-perl (13.5.2) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up liblwp-mediatypes-perl (6.04-1) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libtry-tiny-perl (0.30-1) ...
Setting up libnghttp2-14:armhf (1.43.0-1) ...
Setting up libmagic1:armhf (1:5.41-2) ...
Setting up libdeflate0:armhf (1.8-1) ...
Setting up gettext-base (0.21-4) ...
Setting up libencode-locale-perl (1.05-1.1) ...
Setting up file (1:5.41-2) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libpcre2-16-0:armhf (10.39-2) ...
Setting up libsub-install-perl (0.928-1.1) ...
Setting up zip (3.0-12) ...
Setting up libpackage-stash-xs-perl (0.29-1+b2) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libpcre2-32-0:armhf (10.39-2) ...
Setting up libblas3:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libalgorithm-c3-perl (0.11-1) ...
Setting up libjpeg62-turbo:armhf (1:2.0.6-4) ...
Setting up libswitch-perl (2.17-2.1) ...
Setting up libx11-data (2:1.7.2-2) ...
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Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.3-1) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up libfribidi0:armhf (1.0.8-2) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up libpcre32-3:armhf (2:8.39-13) ...
Setting up libvariable-magic-perl (0.62-1+b3) ...
Setting up libio-html-perl (1.004-2) ...
Setting up libtcl8.6:armhf (8.6.12+dfsg-1) ...
Setting up autopoint (0.21-4) ...
Setting up libwebp6:armhf (0.6.1-2.1) ...
Setting up libb-hooks-op-check-perl (0.22-1+b4) ...
Setting up icu-devtools (67.1-7) ...
Setting up pkg-config (0.29.2-1) ...
Setting up fonts-dejavu-core (2.37-2) ...
Setting up libparams-util-perl (1.102-1+b1) ...
Setting up libgfortran5:armhf (11.2.0-10+rpi1) ...
Setting up libsub-exporter-progressive-perl (0.001013-1) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up liblzma-dev:armhf (5.2.5-2) ...
Setting up libsub-name-perl (0.26-1+b1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libpcre2-posix3:armhf (10.39-2) ...
Setting up libgcc-11-dev:armhf (11.2.0-10+rpi1) ...
Setting up libmd0:armhf (1.0.4-1) ...
Setting up gcc-11 (11.2.0-10+rpi1) ...
Setting up sensible-utils (0.0.17) ...
Setting up cpp (4:11.2.0-2+rpi1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libthai-data (0.1.28-4.1) ...
Setting up libdevel-globaldestruction-perl (0.14-1.1) ...
Setting up libssh2-1:armhf (1.10.0-2) ...
Setting up libdevel-stacktrace-perl (2.0400-1) ...
Setting up libtiff5:armhf (4.3.0-2) ...
Setting up openssl (1.1.1l-1) ...
Setting up libbsd0:armhf (0.11.3-1) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libicu-dev:armhf (67.1-7) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up liburi-perl (5.10-1) ...
Setting up libblas-dev:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-4) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-2) ...
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.3-1) ...
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
Setting up libpcre2-dev:armhf (10.39-2) ...
Setting up libtool (2.4.6-15) ...
Setting up libxcb-render0:armhf (1.14-3) ...
Setting up libpcre3-dev:armhf (2:8.39-13) ...
Setting up libgfortran-11-dev:armhf (11.2.0-10+rpi1) ...
Setting up libpng-dev:armhf (1.6.37-3) ...
Setting up libjpeg-dev:armhf (1:2.0.6-4) ...
Setting up m4 (1.4.18-5) ...
Setting up libcurl3-gnutls:armhf (7.79.1-2) ...
Setting up libxcb-shm0:armhf (1.14-3) ...
Setting up libclass-c3-perl (0.35-1) ...
Setting up libreadline-dev:armhf (8.1-2) ...
Setting up libdevel-callchecker-perl (0.008-1+b2) ...
Setting up gcc (4:11.2.0-2+rpi1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libthai0:armhf (0.1.28-4.1) ...
Setting up ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
129 added, 0 removed; done.
Setting up libfreetype6:armhf (2.11.0+dfsg-1) ...
Setting up liblapack-dev:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.112-1) ...
Setting up ucf (3.0043) ...
Setting up gfortran-11 (11.2.0-10+rpi1) ...
Setting up autoconf (2.71-2) ...
Setting up libstdc++-11-dev:armhf (11.2.0-10+rpi1) ...
Setting up dh-strip-nondeterminism (1.12.0-2) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-7) ...
Setting up libncurses5-dev:armhf (6.3-1) ...
Setting up libcurl4:armhf (7.79.1-2) ...
Setting up libx11-6:armhf (2:1.7.2-2) ...
Setting up libharfbuzz0b:armhf (2.7.4-1) ...
Setting up libmro-compat-perl (0.13-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2+b3) ...
Setting up libsub-exporter-perl (0.988-1) ...
Setting up libhttp-message-perl (6.35-1) ...
Setting up libeval-closure-perl (0.14-1) ...
Setting up automake (1:1.16.5-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up g++-11 (11.2.0-10+rpi1) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl (4.17-7+b1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:11.2.0-2+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up dh-autoreconf (20) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up libdist-checkconflicts-perl (0.11-1.1) ...
Setting up libxt6:armhf (1:1.2.0-1) ...
Setting up g++ (4:11.2.0-2+rpi1) ...
Setting up xauth (1:1.1-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up libmodule-implementation-perl (0.09-1.1) ...
Setting up libpackage-stash-perl (0.39-1) ...
Setting up libtk8.6:armhf (8.6.12-1) ...
Setting up libpango-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up debhelper (13.5.2) ...
Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ...
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up libpackage-deprecationmanager-perl (0.17-1.1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-1+b4) ...
Setting up libpangoft2-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libb-hooks-endofscope-perl (0.25-1) ...
Setting up libpangocairo-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libmoose-perl:armhf (2.2200-1) ...
Setting up r-base-core (4.1.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up r-cran-lattice (0.20-45-1) ...
Setting up r-base-dev (4.1.2-1) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up r-cran-matrix (1.3-4-2) ...
Setting up dh-r (20210816) ...
Setting up sbuild-build-depends-r-bioc-rsubread-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-11+rpi1 g++-11_11.2.0-10+rpi1 gcc-10_10.3.0-11+rpi1 gcc-11_11.2.0-10+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++-11-dev_11.2.0-10+rpi1 libstdc++6_11.2.0-10+rpi1 linux-libc-dev_5.14.9-2+rpi1
Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 coreutils_8.32-4 cpp_4:11.2.0-2+rpi1 cpp-10_10.3.0-11+rpi1 cpp-11_11.2.0-10+rpi1 dash_0.5.11+git20210903+057cd650a4ed-1 dctrl-tools_2.24-3 debconf_1.5.78 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.41-2 findutils_4.8.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:11.2.0-2+rpi1 g++-10_10.3.0-11+rpi1 g++-11_11.2.0-10+rpi1 gcc_4:11.2.0-2+rpi1 gcc-10_10.3.0-11+rpi1 gcc-10-base_10.3.0-11+rpi1 gcc-11_11.2.0-10+rpi1 gcc-11-base_11.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gfortran_4:11.2.0-2+rpi1 gfortran-11_11.2.0-10+rpi1 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 icu-devtools_67.1-7 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libalgorithm-c3-perl_0.11-1 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libasan6_11.2.0-10+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-10+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libb-hooks-endofscope-perl_0.25-1 libb-hooks-op-check-perl_0.22-1+b4 libbinutils_2.37-5+rpi1 libblas-dev_3.10.0-1 libblas3_3.10.0-1 libblkid1_2.37.2-4 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcairo2_1.16.0-5 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10+rpi1 libclass-c3-perl_0.35-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-1+b4 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl3-gnutls_7.79.1-2 libcurl4_7.79.1-2 libdata-optlist-perl_0.112-1 libdatrie1_0.2.13-2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdeflate0_1.8-1 libdevel-callchecker-perl_0.008-1+b2 libdevel-globaldestruction-perl_0.14-1.1 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-1 libdist-checkconflicts-perl_0.11-1.1 libdpkg-perl_1.20.9+rpi1 libdynaloader-functions-perl_0.003-1.1 libelf1_0.185-2 libencode-locale-perl_1.05-1.1 libeval-closure-perl_0.14-1 libexpat1_2.4.1-3 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.12.0-2 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.11.0+dfsg-1 libfribidi0_1.0.8-2 libgcc-10-dev_10.3.0-11+rpi1 libgcc-11-dev_11.2.0-10+rpi1 libgcc-s1_11.2.0-10+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgfortran-11-dev_11.2.0-10+rpi1 libgfortran5_11.2.0-10+rpi1 libglib2.0-0_2.70.1-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-10+rpi1 libgpg-error0_1.42-3 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-7 libharfbuzz0b_2.7.4-1 libhogweed6_3.7.3-1 libhttp-date-perl_6.05-1 libhttp-message-perl_6.35-1 libice6_2:1.0.10-1 libicu-dev_67.1-7 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-html-perl_1.004-2 libisl23_0.24-2 libjbig0_2.1-3.1+b2 libjpeg-dev_1:2.0.6-4 libjpeg62-turbo_1:2.0.6-4 libjpeg62-turbo-dev_1:2.0.6-4 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 liblapack-dev_3.10.0-1 liblapack3_3.10.0-1 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblwp-mediatypes-perl_6.04-1 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmd0_1.0.4-1 libmodule-implementation-perl_0.09-1.1 libmodule-runtime-conflicts-perl_0.003-1.1 libmodule-runtime-perl_0.016-1 libmoose-perl_2.2200-1 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libmro-compat-perl_0.13-1 libnamespace-clean-perl_0.27-1 libncurses-dev_6.3-1 libncurses5-dev_6.3-1 libncurses6_6.3-1 libncursesw6_6.3-1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-5 libpackage-deprecationmanager-perl_0.17-1.1 libpackage-stash-perl_0.39-1 libpackage-stash-xs-perl_0.29-1+b2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpango-1.0-0_1.48.10+ds1-1 libpangocairo-1.0-0_1.48.10+ds1-1 libpangoft2-1.0-0_1.48.10+ds1-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libparams-classify-perl_0.015-1+b3 libparams-util-perl_1.102-1+b1 libpcre16-3_2:8.39-13 libpcre2-16-0_10.39-2 libpcre2-32-0_10.39-2 libpcre2-8-0_10.39-2 libpcre2-dev_10.39-2 libpcre2-posix3_10.39-2 libpcre3_2:8.39-13 libpcre3-dev_2:8.39-13 libpcre32-3_2:8.39-13 libpcrecpp0v5_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.4-1 libpixman-1-0_0.40.0-1 libpng-dev_1.6.37-3 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.2 libreadline-dev_8.1-2 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libscalar-list-utils-perl_1:1.59-1 libseccomp2_2.5.2-2+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsm6_2:1.2.3-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++-11-dev_11.2.0-10+rpi1 libstdc++6_11.2.0-10+rpi1 libsub-exporter-perl_0.988-1 libsub-exporter-progressive-perl_0.001013-1 libsub-identify-perl_0.14-1+b3 libsub-install-perl_0.928-1.1 libsub-name-perl_0.26-1+b1 libsub-override-perl_0.09-2 libswitch-perl_2.17-2.1 libsystemd0_249.5-1+rpi1 libtasn1-6_4.17.0-2 libtcl8.6_8.6.12+dfsg-1 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libthai-data_0.1.28-4.1 libthai0_0.1.28-4.1 libtiff5_4.3.0-2 libtimedate-perl_2.3300-2 libtinfo6_6.3-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtk8.6_8.6.12-1 libtool_2.4.6-15 libtry-tiny-perl_0.30-1 libubsan1_11.2.0-10+rpi1 libuchardet0_0.0.7-1 libudev1_249.5-1+rpi1 libunistring2_0.9.10-6 liburi-perl_5.10-1 libuuid1_2.37.2-4 libvariable-magic-perl_0.62-1+b3 libwebp6_0.6.1-2.1 libwww-curl-perl_4.17-7+b1 libwww-curl-simple-perl_0.100191-2 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1 libxcb-render0_1.14-3 libxcb-shm0_1.14-3 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.2-2 libxml2_2.9.12+dfsg-5 libxmuu1_2:1.1.2-2+b3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.2.0-1 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.9-2+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-4 ncurses-base_6.2+20201114-4 ncurses-bin_6.3-1 netbase_6.3 openssl_1.1.1l-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 r-base-core_4.1.2-1 r-base-dev_4.1.2-1 r-cran-lattice_0.20-45-1 r-cran-matrix_1.3-4-2 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-rsubread-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 unzip_6.0-26 util-linux_2.37.2-4 x11-common_1:7.7+23 xauth_1:1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2 zip_3.0-12 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.3CrndOQ_/trustedkeys.kbx': General error
gpgv: Signature made Thu Sep 2 09:40:24 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-rsubread_2.6.4-1.dsc
dpkg-source: info: extracting r-bioc-rsubread in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-rsubread_2.6.4.orig.tar.gz
dpkg-source: info: unpacking r-bioc-rsubread_2.6.4-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-3c979d82-66ab-4d8d-8b86-f488a558eb00
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-rsubread
dpkg-buildpackage: info: source version 2.6.4-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-rsubread/ -a -O--buildsystem=R
I: R Package: Rsubread Version: 2.6.4
I: Building using R version 4.1.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Thu, 02 Sep 2021 11:37:52 +0200
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-rsubread/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-rsubread/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 02 Sep 2021 11:37:52 +0200'"
* installing *source* package 'Rsubread' ...
** using staged installation
@@@@@ The operating system is Linux.
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-4lrxNK/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c HelperFunctions.c -o HelperFunctions.o
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-4lrxNK/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LRMbase-index.c -o LRMbase-index.o
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-4lrxNK/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LRMchro-event.c -o LRMchro-event.o
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-4lrxNK/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LRMfile-io.c -o LRMfile-io.o
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-4lrxNK/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LRMhashtable.c -o LRMhashtable.o
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-4lrxNK/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LRMhelper.c -o LRMhelper.o
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-4lrxNK/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LRMseek-zlib.c -o LRMseek-zlib.o
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-4lrxNK/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LRMsorted-hashtable.c -o LRMsorted-hashtable.o
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-4lrxNK/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_wrapper.c -o R_wrapper.o
In file included from /usr/lib/gcc/arm-linux-gnueabihf/11/include/stdint.h:9,
from HelperFunctions.h:172,
from R_wrapper.c:35:
/usr/include/stdint.h:96:33: error: conflicting types for 'uintptr_t'; have 'unsigned int'
96 | typedef unsigned int uintptr_t;
| ^~~~~~~~~
In file included from R_wrapper.c:30:
/usr/share/R/include/Rinterface.h:110:24: note: previous declaration of 'uintptr_t' with type 'uintptr_t' {aka 'long unsigned int'}
110 | typedef unsigned long uintptr_t;
| ^~~~~~~~~
make[1]: *** [/usr/lib/R/etc/Makeconf:168: R_wrapper.o] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
ERROR: compilation failed for package 'Rsubread'
* removing '/<<PKGBUILDDIR>>/debian/r-bioc-rsubread/usr/lib/R/site-library/Rsubread'
dh_auto_install: error: R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-rsubread/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 02 Sep 2021 11:37:52 +0200'" returned exit code 1
make: *** [debian/rules:4: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2021-11-23T04:07:27Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 36996
Build-Time: 14
Distribution: bookworm-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 737
Job: r-bioc-rsubread_2.6.4-1
Machine Architecture: armhf
Package: r-bioc-rsubread
Package-Time: 772
Source-Version: 2.6.4-1
Space: 36996
Status: attempted
Version: 2.6.4-1
--------------------------------------------------------------------------------
Finished at 2021-11-23T04:07:27Z
Build needed 00:12:52, 36996k disk space