r-bioc-rhdf5lib →
1.12.1+dfsg-1 →
armhf → 2021-02-02 05:58:50
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| r-bioc-rhdf5lib 1.12.1+dfsg-1 (armhf) Tue, 02 Feb 2021 05:47:51 +0000 |
+==============================================================================+
Package: r-bioc-rhdf5lib
Version: 1.12.1+dfsg-1
Source Version: 1.12.1+dfsg-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-c11597c1-be59-4866-a475-38ddf466afd5' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.1 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.1 MB]
Fetched 25.3 MB in 9s (2686 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-rhdf5lib' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5lib.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5lib.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 48.1 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main r-bioc-rhdf5lib 1.12.1+dfsg-1 (dsc) [2181 B]
Get:2 http://172.17.0.1/private bullseye-staging/main r-bioc-rhdf5lib 1.12.1+dfsg-1 (tar) [39.5 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main r-bioc-rhdf5lib 1.12.1+dfsg-1 (diff) [6456 B]
Fetched 48.1 kB in 0s (152 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-rhdf5lib-sh995L/r-bioc-rhdf5lib-1.12.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-rhdf5lib-sh995L' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-K4BqLk/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-K4BqLk/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-K4BqLk/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-K4BqLk/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-K4BqLk/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-K4BqLk/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-K4BqLk/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-K4BqLk/apt_archive ./ Packages [429 B]
Fetched 2105 B in 0s (9842 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 13 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-K4BqLk/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (64.2 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12401 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, libhdf5-dev
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, libhdf5-dev
dpkg-deb: building package 'sbuild-build-depends-r-bioc-rhdf5lib-dummy' in '/<<BUILDDIR>>/resolver-K4BqLk/apt_archive/sbuild-build-depends-r-bioc-rhdf5lib-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-rhdf5lib-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-K4BqLk/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-K4BqLk/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-K4BqLk/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-K4BqLk/apt_archive ./ Sources [515 B]
Get:5 copy:/<<BUILDDIR>>/resolver-K4BqLk/apt_archive ./ Packages [592 B]
Fetched 2440 B in 0s (11.3 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-rhdf5lib build dependencies (apt-based resolver)
---------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev ca-certificates dctrl-tools
debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-10 groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev
libaec0 libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev
libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl
libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl
libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-10-dev libgfortran5 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-103-1
libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100
libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1
libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
libsz2 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6
libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl
libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config
po-debconf r-base-core r-base-dev ucf unzip x11-common xauth xdg-utils zip
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc
libasprintf-dev libgettextpo-dev gfortran-doc gfortran-10-doc
libcoarrays-dev groff liblapack-doc krb5-doc krb5-user libhdf5-doc icu-doc
liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6
libtool-doc gcj-jdk libwww-perl libcurl4-gnutls-dev m4-doc apparmor less
www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib
r-base-html texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libclass-c3-xs-perl
libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libclone-perl krb5-locales libdevel-partialdump-perl libgpm2
libpng-tools publicsuffix libltdl-dev libmail-sendmail-perl r-recommended
r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev ca-certificates dctrl-tools
debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-10 groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev
libaec0 libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev
libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl
libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl
libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-10-dev libgfortran5 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhdf5-103-1
libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100
libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1
libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
libsz2 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6
libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl
libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config
po-debconf r-base-core r-base-dev sbuild-build-depends-r-bioc-rhdf5lib-dummy
ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
0 upgraded, 182 newly installed, 0 to remove and 13 not upgraded.
Need to get 89.6 MB of archives.
After this operation, 264 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-K4BqLk/apt_archive ./ sbuild-build-depends-r-bioc-rhdf5lib-dummy 0.invalid.0 [884 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-6 [793 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.21-3 [170 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-3 [32.4 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.21-3 [509 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1i-3 [1273 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1i-3 [814 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.3.1 [188 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.10.0-1 [25.6 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.10.0-1 [15.3 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-3 [162 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13+20210118-1 [163 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-6 [8289 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.21-3 [1214 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.3.1 [1010 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf unzip armhf 6.0-26 [151 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf xdg-utils all 1.1.3-2 [74.6 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [353 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2.1 [136 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.7.0-2 [310 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.7.0-2 [706 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.14-2.1 [110 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.14-2.1 [101 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.18.3-4 [62.3 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.18.3-4 [108 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.18.3-4 [315 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.18.3-4 [142 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.42.0-1 [66.7 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.9.0-2 [141 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.74.0-1 [305 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.4-1 [1182 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-2 [120 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.1-6+rpi1 [232 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.13-1 [39.5 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.46.2-3 [172 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.46.2-3 [55.7 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.46.2-3 [46.7 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.11+dfsg-1 [894 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.7-1 [44.0 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.2.0-1 [268 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+21 [252 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.11-1 [681 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf r-base-core armhf 4.0.3-1 [24.7 MB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-10-dev armhf 10.2.1-6+rpi1 [278 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf gfortran-10 armhf 10.2.1-6+rpi1 [7195 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:10.2.1-1+rpi1 [1428 B]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2+20201114-2 [79.9 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libncurses-dev armhf 6.2+20201114-2 [288 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libncurses5-dev armhf 6.2+20201114-2 [936 B]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libreadline-dev armhf 8.1-1 [121 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.5-2 [239 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev armhf 1:2.0.5-2 [66.2 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.36-2 [197 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.36-2 [187 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix2 armhf 10.36-2 [48.7 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.36-2 [626 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.5-1.0 [219 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 67.1-6 [172 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 67.1-6 [9229 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf xauth armhf 1:1.1-1 [36.6 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf r-base-dev all 4.0.3-1 [4484 B]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libswitch-perl all 2.17-2.1 [20.0 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libtimedate-perl all 2.3300-1 [39.2 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libio-html-perl all 1.001-1.1 [18.6 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf liburi-perl all 5.06-1 [90.3 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf libhttp-message-perl all 6.27-1 [79.5 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf libdata-optlist-perl all 0.110-1.1 [10.8 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf libpackage-stash-perl all 0.39-1 [21.9 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b4 [14.3 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf libmro-compat-perl all 0.13-1 [12.2 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf libdevel-overloadinfo-perl all 0.005-1 [7212 B]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf libsub-exporter-perl all 0.987-1 [47.2 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.5 kB]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf libmoose-perl armhf 2.2014-2 [802 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB]
Get:167 http://172.17.0.1/private bullseye-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:168 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.74.0-1 [301 kB]
Get:169 http://172.17.0.1/private bullseye-staging/main armhf libwww-curl-perl armhf 4.17-7+b1 [58.9 kB]
Get:170 http://172.17.0.1/private bullseye-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:171 http://172.17.0.1/private bullseye-staging/main armhf dh-r all 20201129 [41.0 kB]
Get:172 http://172.17.0.1/private bullseye-staging/main armhf hdf5-helpers armhf 1.10.6+repack-2 [40.0 kB]
Get:173 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:174 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:175 http://172.17.0.1/private bullseye-staging/main armhf libaec-dev armhf 1.0.4-1 [17.8 kB]
Get:176 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103-1 armhf 1.10.6+repack-2 [1184 kB]
Get:177 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.6+repack-2 [128 kB]
Get:178 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-fortran-102 armhf 1.10.6+repack-2 [93.0 kB]
Get:179 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-100 armhf 1.10.6+repack-2 [78.1 kB]
Get:180 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.6+repack-2 [49.8 kB]
Get:181 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.6+repack-2 [36.9 kB]
Get:182 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-dev armhf 1.10.6+repack-2 [2167 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 89.6 MB in 21s (4210 kB/s)
Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 12401 files and directories currently installed.)
Preparing to unpack .../000-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../001-groff-base_1.22.4-6_armhf.deb ...
Unpacking groff-base (1.22.4-6) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../002-libpipeline1_1.5.3-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.3-1) ...
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Unpacking man-db (2.9.3-2) ...
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Preparing to unpack .../004-libmagic-mgc_1%3a5.39-3_armhf.deb ...
Unpacking libmagic-mgc (1:5.39-3) ...
Selecting previously unselected package libmagic1:armhf.
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Unpacking libmagic1:armhf (1:5.39-3) ...
Selecting previously unselected package file.
Preparing to unpack .../006-file_1%3a5.39-3_armhf.deb ...
Unpacking file (1:5.39-3) ...
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Preparing to unpack .../007-gettext-base_0.21-3_armhf.deb ...
Unpacking gettext-base (0.21-3) ...
Selecting previously unselected package ucf.
Preparing to unpack .../008-ucf_3.0043_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0043) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../009-libsigsegv2_2.12-3_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-3) ...
Selecting previously unselected package m4.
Preparing to unpack .../010-m4_1.4.18-5_armhf.deb ...
Unpacking m4 (1.4.18-5) ...
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Preparing to unpack .../011-autoconf_2.69-14_all.deb ...
Unpacking autoconf (2.69-14) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../012-autotools-dev_20180224.1+nmu1_all.deb ...
Unpacking autotools-dev (20180224.1+nmu1) ...
Selecting previously unselected package automake.
Preparing to unpack .../013-automake_1%3a1.16.3-2_all.deb ...
Unpacking automake (1:1.16.3-2) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../014-autopoint_0.21-3_all.deb ...
Unpacking autopoint (0.21-3) ...
Selecting previously unselected package libssl1.1:armhf.
Preparing to unpack .../015-libssl1.1_1.1.1i-3_armhf.deb ...
Unpacking libssl1.1:armhf (1.1.1i-3) ...
Selecting previously unselected package openssl.
Preparing to unpack .../016-openssl_1.1.1i-3_armhf.deb ...
Unpacking openssl (1.1.1i-3) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../017-ca-certificates_20210119_all.deb ...
Unpacking ca-certificates (20210119) ...
Selecting previously unselected package dctrl-tools.
Preparing to unpack .../018-dctrl-tools_2.24-3_armhf.deb ...
Unpacking dctrl-tools (2.24-3) ...
Selecting previously unselected package libtool.
Preparing to unpack .../019-libtool_2.4.6-15_all.deb ...
Unpacking libtool (2.4.6-15) ...
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Unpacking dh-autoreconf (19) ...
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Preparing to unpack .../021-libdebhelper-perl_13.3.1_all.deb ...
Unpacking libdebhelper-perl (13.3.1) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../022-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
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Preparing to unpack .../023-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../024-libfile-stripnondeterminism-perl_1.10.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.10.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
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Unpacking dh-strip-nondeterminism (1.10.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../026-libelf1_0.182-3_armhf.deb ...
Unpacking libelf1:armhf (0.182-3) ...
Selecting previously unselected package dwz.
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Unpacking dwz (0.13+20210118-1) ...
Selecting previously unselected package libicu67:armhf.
Preparing to unpack .../028-libicu67_67.1-6_armhf.deb ...
Unpacking libicu67:armhf (67.1-6) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../029-libxml2_2.9.10+dfsg-6.3_armhf.deb ...
Unpacking libxml2:armhf (2.9.10+dfsg-6.3) ...
Selecting previously unselected package gettext.
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Unpacking gettext (0.21-3) ...
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Unpacking intltool-debian (0.35.0+20060710.5) ...
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Unpacking po-debconf (1.0.21+nmu1) ...
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Unpacking debhelper (13.3.1) ...
Selecting previously unselected package zip.
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Unpacking zip (3.0-11) ...
Selecting previously unselected package unzip.
Preparing to unpack .../035-unzip_6.0-26_armhf.deb ...
Unpacking unzip (6.0-26) ...
Selecting previously unselected package libpaper1:armhf.
Preparing to unpack .../036-libpaper1_1.1.28_armhf.deb ...
Unpacking libpaper1:armhf (1.1.28) ...
Selecting previously unselected package libpaper-utils.
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Unpacking libpaper-utils (1.1.28) ...
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Unpacking xdg-utils (1.1.3-2) ...
Selecting previously unselected package libblas3:armhf.
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Unpacking libblas3:armhf (3.9.0-3) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../040-libexpat1_2.2.10-1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.10-1) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../041-libbrotli1_1.0.9-2+b1_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.9-2+b1) ...
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Setting up libexpat1:armhf (2.2.10-1) ...
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Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
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Setting up libfile-which-perl (1.23-1) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up libkeyutils1:armhf (1.6.1-2) ...
Setting up libpsl5:armhf (0.21.0-1.1) ...
Setting up libpcre16-3:armhf (2:8.39-13) ...
Setting up hdf5-helpers (1.10.6+repack-2) ...
Setting up libicu67:armhf (67.1-6) ...
Setting up libdynaloader-functions-perl (0.003-1.1) ...
Setting up libdatrie1:armhf (0.2.13-1) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-1+b3) ...
Setting up libglib2.0-0:armhf (2.66.4-1) ...
No schema files found: doing nothing.
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Setting up unzip (6.0-26) ...
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Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up liblwp-mediatypes-perl (6.04-1) ...
Setting up x11-common (1:7.7+21) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of start.
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Setting up libnghttp2-14:armhf (1.42.0-1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
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Setting up libencode-locale-perl (1.05-1.1) ...
Setting up file (1:5.39-3) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libpcre2-16-0:armhf (10.36-2) ...
Setting up libaec0:armhf (1.0.4-1) ...
Setting up libsub-install-perl (0.928-1.1) ...
Setting up libkrb5support0:armhf (1.18.3-4) ...
Setting up zip (3.0-11) ...
Setting up libpackage-stash-xs-perl (0.29-1+b2) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libpcre2-32-0:armhf (10.36-2) ...
Setting up libblas3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Setting up libvariable-magic-perl (0.62-1+b3) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
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Creating config file /etc/papersize with new version
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Setting up libdevel-callchecker-perl (0.008-1+b2) ...
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Setting up libthai0:armhf (0.1.28-3) ...
Setting up ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
129 added, 0 removed; done.
Setting up libfreetype6:armhf (2.10.4+dfsg-1) ...
Setting up liblapack-dev:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libgssapi-krb5-2:armhf (1.18.3-4) ...
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Setting up autoconf (2.69-14) ...
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Setting up libcurl4:armhf (7.74.0-1) ...
Setting up libx11-6:armhf (2:1.7.0-2) ...
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Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up libmro-compat-perl (0.13-1) ...
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Setting up libxmuu1:armhf (2:1.1.2-2+b3) ...
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Setting up libeval-closure-perl (0.14-1) ...
Setting up libhdf5-hl-100:armhf (1.10.6+repack-2) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
Setting up libpango-1.0-0:armhf (1.46.2-3) ...
Setting up libxext6:armhf (2:1.3.3-1.1) ...
Setting up libcurl3-gnutls:armhf (7.74.0-1) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:10.2.1-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.6+repack-2) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up libhdf5-fortran-102:armhf (1.10.6+repack-2) ...
Setting up libdist-checkconflicts-perl (0.11-1.1) ...
Setting up libxt6:armhf (1:1.2.0-1) ...
Setting up xauth (1:1.1-1) ...
Setting up libhdf5-hl-fortran-100:armhf (1.10.6+repack-2) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libpangoft2-1.0-0:armhf (1.46.2-3) ...
Setting up libpangocairo-1.0-0:armhf (1.46.2-3) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up libmodule-implementation-perl (0.09-1.1) ...
Setting up libpackage-stash-perl (0.39-1) ...
Setting up libtk8.6:armhf (8.6.11-1) ...
Setting up libwww-curl-perl (4.17-7+b1) ...
Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up r-base-core (4.0.3-1) ...
Creating config file /etc/R/Renviron with new version
Setting up libhdf5-dev (1.10.6+repack-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libpackage-deprecationmanager-perl (0.17-1.1) ...
Setting up libdevel-overloadinfo-perl (0.005-1) ...
Setting up libclass-load-xs-perl (0.10-1+b4) ...
Setting up libb-hooks-endofscope-perl (0.24-1.1) ...
Setting up r-base-dev (4.0.3-1) ...
Setting up libmoose-perl (2.2014-2) ...
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.3.1) ...
Setting up dh-r (20201129) ...
Setting up sbuild-build-depends-r-bioc-rhdf5lib-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-9+rpi1) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.35.1-7+rpi1 dpkg-dev_1.20.7.1+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.4-1+rpi1
Package versions: adduser_3.118 apt_2.1.18 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-3 autotools-dev_20180224.1+nmu1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1-2 binutils_2.35.1-7+rpi1 binutils-arm-linux-gnueabihf_2.35.1-7+rpi1 binutils-common_2.35.1-7+rpi1 bsdextrautils_2.36.1-6 bsdutils_1:2.36.1-6 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 dash_0.5.11+git20200708+dd9ef66-5 dctrl-tools_2.24-3 debconf_1.5.74 debhelper_13.3.1 debianutils_4.11.2 dh-autoreconf_19 dh-r_20201129 dh-strip-nondeterminism_1.10.0-1 diffutils_1:3.7-5 dirmngr_2.2.20-1 dpkg_1.20.7.1+rpi1 dpkg-dev_1.20.7.1+rpi1 dwz_0.13+20210118-1 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-6 file_1:5.39-3 findutils_4.8.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gettext_0.21-3 gettext-base_0.21-3 gfortran_4:10.2.1-1+rpi1 gfortran-10_10.2.1-6+rpi1 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-2 hdf5-helpers_1.10.6+repack-2 hostname_3.23 icu-devtools_67.1-6 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 libacl1_2.2.53-9 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libalgorithm-c3-perl_0.11-1 libapt-pkg6.0_2.1.18 libarchive-zip-perl_1.68-1 libasan6_10.2.1-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libb-hooks-endofscope-perl_0.24-1.1 libb-hooks-op-check-perl_0.22-1+b4 libbinutils_2.35.1-7+rpi1 libblas-dev_3.9.0-3 libblas3_3.9.0-3 libblkid1_2.36.1-6 libbrotli1_1.0.9-2+b1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.31-9+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcairo2_1.16.0-5 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_10.2.1-6+rpi1 libclass-c3-perl_0.35-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-1+b4 libcom-err2_1.45.6-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-7+rpi1 libctf0_2.35.1-7+rpi1 libcurl3-gnutls_7.74.0-1 libcurl4_7.74.0-1 libdata-optlist-perl_0.110-1.1 libdatrie1_0.2.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.256 libdebhelper-perl_13.3.1 libdeflate0_1.7-1 libdevel-callchecker-perl_0.008-1+b2 libdevel-globaldestruction-perl_0.14-1.1 libdevel-overloadinfo-perl_0.005-1 libdevel-stacktrace-perl_2.0400-1 libdist-checkconflicts-perl_0.11-1.1 libdpkg-perl_1.20.7.1+rpi1 libdynaloader-functions-perl_0.003-1.1 libelf1_0.182-3 libencode-locale-perl_1.05-1.1 libeval-closure-perl_0.14-1 libexpat1_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-6 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.10.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.4+dfsg-1 libfribidi0_1.0.8-2 libgcc-10-dev_10.2.1-6+rpi1 libgcc-s1_10.2.1-6+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran-10-dev_10.2.1-6+rpi1 libgfortran5_10.2.1-6+rpi1 libglib2.0-0_2.66.4-1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.0-5 libgomp1_10.2.1-6+rpi1 libgpg-error0_1.38-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-4 libharfbuzz0b_2.7.4-1 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libhogweed6_3.6-2 libhttp-date-perl_6.05-1 libhttp-message-perl_6.27-1 libice6_2:1.0.10-1 libicu-dev_67.1-6 libicu67_67.1-6 libidn2-0_2.3.0-5 libio-html-perl_1.001-1.1 libisl23_0.23-1 libjbig0_2.1-3.1+b2 libjpeg-dev_1:2.0.5-2 libjpeg62-turbo_1:2.0.5-2 libjpeg62-turbo-dev_1:2.0.5-2 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libksba8_1.5.0-3 liblapack-dev_3.9.0-3 liblapack3_3.9.0-3 libldap-2.4-2_2.4.56+dfsg-1+rpi1+b1 libldap-common_2.4.56+dfsg-1+rpi1 liblwp-mediatypes-perl_6.04-1 liblz4-1_1.9.3-1+rpi1 liblzma-dev_5.2.5-1.0 liblzma5_5.2.5-1.0 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmodule-implementation-perl_0.09-1.1 libmodule-runtime-conflicts-perl_0.003-1.1 libmodule-runtime-perl_0.016-1 libmoose-perl_2.2014-2 libmount1_2.36.1-6 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmro-compat-perl_0.13-1 libnamespace-clean-perl_0.27-1 libncurses-dev_6.2+20201114-2 libncurses5-dev_6.2+20201114-2 libncurses6_6.2+20201114-2 libncursesw6_6.2+20201114-2 libnettle8_3.6-2 libnghttp2-14_1.42.0-1 libnpth0_1.6-3 libp11-kit0_0.23.22-1 libpackage-deprecationmanager-perl_0.17-1.1 libpackage-stash-perl_0.39-1 libpackage-stash-xs-perl_0.29-1+b2 libpam-cap_1:2.44-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.4.0-2 libpam0g_1.4.0-2 libpango-1.0-0_1.46.2-3 libpangocairo-1.0-0_1.46.2-3 libpangoft2-1.0-0_1.46.2-3 libpaper-utils_1.1.28 libpaper1_1.1.28 libparams-classify-perl_0.015-1+b3 libparams-util-perl_1.102-1+b1 libpcre16-3_2:8.39-13 libpcre2-16-0_10.36-2 libpcre2-32-0_10.36-2 libpcre2-8-0_10.36-2 libpcre2-dev_10.36-2 libpcre2-posix2_10.36-2 libpcre3_2:8.39-13 libpcre3-dev_2:8.39-13 libpcre32-3_2:8.39-13 libpcrecpp0v5_2:8.39-13 libperl5.32_5.32.0-6 libpipeline1_1.5.3-1 libpixman-1-0_0.40.0-1 libpng-dev_1.6.37-3 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.1 libreadline-dev_8.1-1 libreadline8_8.1-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.12-3 libsm6_2:1.2.3-1 libsmartcols1_2.36.1-6 libsqlite3-0_3.34.1-1 libss2_1.45.6-1 libssh2-1_1.9.0-2 libssl1.1_1.1.1i-3 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 libsub-exporter-perl_0.987-1 libsub-exporter-progressive-perl_0.001013-1 libsub-identify-perl_0.14-1+b3 libsub-install-perl_0.928-1.1 libsub-name-perl_0.26-1+b1 libsub-override-perl_0.09-2 libswitch-perl_2.17-2.1 libsystemd0_247.2-5+rpi1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtcl8.6_8.6.11+dfsg-1 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.2.0-1 libtimedate-perl_2.3300-1 libtinfo6_6.2+20201114-2 libtk8.6_8.6.11-1 libtool_2.4.6-15 libtry-tiny-perl_0.30-1 libubsan1_10.2.1-6+rpi1 libuchardet0_0.0.7-1 libudev1_247.2-5+rpi1 libunistring2_0.9.10-4 liburi-perl_5.06-1 libuuid1_2.36.1-6 libvariable-magic-perl_0.62-1+b3 libwebp6_0.6.1-2 libwww-curl-perl_4.17-7+b1 libwww-curl-simple-perl_0.100191-2 libx11-6_2:1.7.0-2 libx11-data_2:1.7.0-2 libxau6_1:1.0.8-1+b2 libxcb-render0_1.14-2.1 libxcb-shm0_1.14-2.1 libxcb1_1.14-2.1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1.1 libxft2_2.3.2-2 libxml2_2.9.10+dfsg-6.3 libxmuu1_2:1.1.2-2+b3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.2.0-1 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-1 linux-libc-dev_5.10.4-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36.1-6 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 netbase_6.2 openssl_1.1.1i-3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.0-6 perl-base_5.32.0-6 perl-modules-5.32_5.32.0-6 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 r-base-core_4.0.3-1 r-base-dev_4.0.3-1 raspbian-archive-keyring_20120528.2 readline-common_8.1-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-rhdf5lib-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-5 tar_1.32+dfsg-1+rpi1 tzdata_2020f-1 ucf_3.0043 unzip_6.0-26 util-linux_2.36.1-6 x11-common_1:7.7+21 xauth_1:1.1-1 xdg-utils_1.1.3-2 xz-utils_5.2.5-1.0 zip_3.0-11 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.k8QDKora/trustedkeys.kbx': General error
gpgv: Signature made Sat Jan 30 14:12:26 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-rhdf5lib_1.12.1+dfsg-1.dsc
dpkg-source: info: extracting r-bioc-rhdf5lib in /<<BUILDDIR>>/r-bioc-rhdf5lib-1.12.1+dfsg
dpkg-source: info: unpacking r-bioc-rhdf5lib_1.12.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-rhdf5lib_1.12.1+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libhdf5-dev.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-c11597c1-be59-4866-a475-38ddf466afd5
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-rhdf5lib
dpkg-buildpackage: info: source version 1.12.1+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-rhdf5lib-1.12.1+dfsg'
dh_auto_clean
rm -f src/config.log
rm -f src/config.status
rm -f confdefs.h
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-rhdf5lib-1.12.1+dfsg'
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R packages needed for DEP8: knitr, rmarkdown
I: R Package: Rhdf5lib Version: 1.12.1
I: Building using R version 4.0.3-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Sat, 30 Jan 2021 15:00:30 +0100
mkdir -p /<<BUILDDIR>>/r-bioc-rhdf5lib-1.12.1\+dfsg/debian/r-bioc-rhdf5lib/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-rhdf5lib-1.12.1\+dfsg/debian/r-bioc-rhdf5lib/usr/lib/R/site-library --clean . "--built-timestamp='Sat, 30 Jan 2021 15:00:30 +0100'"
* installing *source* package 'Rhdf5lib' ...
** using staged installation
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++11 accepts -g... yes
checking whether C++ compiler accepts -w... yes
checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for zlib.h... yes
checking curl/curl.h usability... no
checking curl/curl.h presence... no
checking for curl/curl.h... no
checking openssl/evp.h usability... no
checking openssl/evp.h presence... no
checking for openssl/evp.h... no
checking openssl/hmac.h usability... no
checking openssl/hmac.h presence... no
checking for openssl/hmac.h... no
checking openssl/sha.h usability... no
checking openssl/sha.h presence... no
checking for openssl/sha.h... no
S3_VFD=--enable-ros3-vfd=no
untarring hdf5small_cxx_hl_1.10.6.tar.gz ...
gzip: hdf5small_cxx_hl_1.10.6.tar.gz: No such file or directory
tar: This does not look like a tar archive
tar: Exiting with failure status due to previous errors
configure: HDF5_INCLUDE=/usr/include/hdf5/serial
configure: HDF5_CXX_INCLUDE=/usr/include/hdf5/serial
configure: HDF5_HL_INCLUDE=/usr/include/hdf5/serial
configure: HDF5_HL_CXX_INCLUDE=/usr/include/hdf5/serial
configure: HDF5_LIB=/usr/lib/arm-linux-gnueabihf/hdf5/serial/
configure: HDF5_CXX_LIB=/usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5_cpp.a
configure: HDF5_HL_LIB=/usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5_hl.a
configure: HDF5_HL_CXX_LIB=/usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5_hl_cpp.a
configure: SZIP_LIB=/usr/lib/arm-linux-gnueabihf/libsz.a
sed: can't read confdefs.h: No such file or directory
configure: creating ./config.status
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-rhdf5lib-1.12.1+dfsg/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -fpic -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rhdf5lib.c -o Rhdf5lib.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o Rhdf5lib.so Rhdf5lib.o -L/usr/lib/arm-linux-gnueabihf/hdf5/serial/ -lhdf5 -lsz -lz -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-rhdf5lib-1.12.1+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-rhdf5lib-1.12.1+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-rhdf5lib-1.12.1+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-rhdf5lib-1.12.1+dfsg/debian/r-bioc-rhdf5lib/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5lib-1.12.1+dfsg/00new/Rhdf5lib/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rhdf5lib)
W: Ignoring specified R dependency: R (>= 3.3.0)
I: Using r-cran-knitr for Recommends:knitr
I: Using r-cran-rmarkdown for Recommends:rmarkdown
I: Using r-bioc-biocstyle for Suggests:BiocStyle
I: Using r-cran-tinytest for Suggests:tinytest
I: BioConductor API version: r-api-bioc-3.12
I: Use r-bioc-rhdf5lib as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -a -O--buildsystem=R
dh_strip -a -a -O--buildsystem=R
dh_makeshlibs -a -a -O--buildsystem=R
dh_shlibdeps -a -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-rhdf5lib' in '../r-bioc-rhdf5lib_1.12.1+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-rhdf5lib-dbgsym' in '../r-bioc-rhdf5lib-dbgsym_1.12.1+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../r-bioc-rhdf5lib_1.12.1+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-02-02T05:58:45Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-rhdf5lib_1.12.1+dfsg-1_armhf.changes:
--------------------------------------------
Format: 1.8
Date: Sat, 30 Jan 2021 15:00:30 +0100
Source: r-bioc-rhdf5lib
Binary: r-bioc-rhdf5lib r-bioc-rhdf5lib-dbgsym
Architecture: armhf
Version: 1.12.1+dfsg-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-rhdf5lib - GNU R hdf5 library
Changes:
r-bioc-rhdf5lib (1.12.1+dfsg-1) unstable; urgency=medium
.
* New upstream version
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Checksums-Sha256:
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Files:
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0e8e7e5d3179542b5ec224308625e44f 9716 gnu-r optional r-bioc-rhdf5lib_1.12.1+dfsg-1_armhf.buildinfo
c4d052ce90cd74276025197a93e93303 27512 gnu-r optional r-bioc-rhdf5lib_1.12.1+dfsg-1_armhf.deb
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| Package contents |
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r-bioc-rhdf5lib-dbgsym_1.12.1+dfsg-1_armhf.deb
----------------------------------------------
new Debian package, version 2.0.
size 4404 bytes: control archive=544 bytes.
407 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-rhdf5lib-dbgsym
Source: r-bioc-rhdf5lib
Version: 1.12.1+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 17
Depends: r-bioc-rhdf5lib (= 1.12.1+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-rhdf5lib
Build-Ids: bd528d5d600f93425a23b44fdffb304c63d79c3b
drwxr-xr-x root/root 0 2021-01-30 14:00 ./
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/lib/
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/lib/debug/.build-id/bd/
-rw-r--r-- root/root 6368 2021-01-30 14:00 ./usr/lib/debug/.build-id/bd/528d5d600f93425a23b44fdffb304c63d79c3b.debug
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/share/
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-01-30 14:00 ./usr/share/doc/r-bioc-rhdf5lib-dbgsym -> r-bioc-rhdf5lib
r-bioc-rhdf5lib_1.12.1+dfsg-1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 27512 bytes: control archive=1516 bytes.
609 bytes, 16 lines control
2439 bytes, 30 lines md5sums
Package: r-bioc-rhdf5lib
Version: 1.12.1+dfsg-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 90
Depends: r-base-core (>= 4.0.3-1), r-api-4.0, r-api-bioc-3.12, libc6 (>= 2.4), libhdf5-103-1
Recommends: r-cran-knitr, r-cran-rmarkdown
Suggests: r-bioc-biocstyle, r-cran-tinytest
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/Rhdf5lib/
Description: GNU R hdf5 library
This GNU R package provides an interface to the
C and C++ hdf5 libraries.
.
HDF5 is a file format and library for storing scientific data.
drwxr-xr-x root/root 0 2021-01-30 14:00 ./
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/lib/
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/lib/R/
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/
-rw-r--r-- root/root 857 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/DESCRIPTION
-rw-r--r-- root/root 280 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/INDEX
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/Meta/
-rw-r--r-- root/root 456 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/Meta/Rd.rds
-rw-r--r-- root/root 131 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/Meta/features.rds
-rw-r--r-- root/root 466 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/Meta/hsearch.rds
-rw-r--r-- root/root 174 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/Meta/links.rds
-rw-r--r-- root/root 250 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/Meta/nsInfo.rds
-rw-r--r-- root/root 974 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/Meta/package.rds
-rw-r--r-- root/root 251 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/Meta/vignette.rds
-rw-r--r-- root/root 179 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/NAMESPACE
-rw-r--r-- root/root 541 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/NEWS
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/R/
-rw-r--r-- root/root 1058 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/R/Rhdf5lib
-rw-r--r-- root/root 4417 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/R/Rhdf5lib.rdb
-rw-r--r-- root/root 329 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/R/Rhdf5lib.rdx
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/doc/
-rw-r--r-- root/root 388 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/doc/Rhdf5lib.R
-rw-r--r-- root/root 4555 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/doc/Rhdf5lib.Rmd
-rw-r--r-- root/root 6652 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/doc/downloadHDF5.R
-rw-r--r-- root/root 6784 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/doc/downloadHDF5.Rmd
-rw-r--r-- root/root 1852 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/doc/index.html
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/help/
-rw-r--r-- root/root 95 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/help/AnIndex
-rw-r--r-- root/root 4720 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/help/Rhdf5lib.rdb
-rw-r--r-- root/root 260 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/help/Rhdf5lib.rdx
-rw-r--r-- root/root 136 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/help/aliases.rds
-rw-r--r-- root/root 190 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/help/paths.rds
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/html/
-rw-r--r-- root/root 1501 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/html/00Index.html
-rw-r--r-- root/root 1335 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/html/R.css
lrwxrwxrwx root/root 0 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/include -> ../../../../include/hdf5/serial
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/libs/
-rw-r--r-- root/root 5496 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/libs/Rhdf5lib.so
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/tinytest/
-rw-r--r-- root/root 88 2021-01-30 14:00 ./usr/lib/R/site-library/Rhdf5lib/tinytest/test_library_version.R
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/share/
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-01-30 14:00 ./usr/share/doc/r-bioc-rhdf5lib/
-rw-r--r-- root/root 726 2021-01-30 14:00 ./usr/share/doc/r-bioc-rhdf5lib/changelog.Debian.gz
-rw-r--r-- root/root 9785 2021-01-30 14:00 ./usr/share/doc/r-bioc-rhdf5lib/copyright
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| Post Build |
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 988
Build-Time: 25
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 611
Job: r-bioc-rhdf5lib_1.12.1+dfsg-1
Machine Architecture: armhf
Package: r-bioc-rhdf5lib
Package-Time: 654
Source-Version: 1.12.1+dfsg-1
Space: 988
Status: successful
Version: 1.12.1+dfsg-1
--------------------------------------------------------------------------------
Finished at 2021-02-02T05:58:45Z
Build needed 00:10:54, 988k disk space