Build log for r-bioc-rhdf5lib (1.12.0+dfsg-1) on armhf

r-bioc-rhdf5lib → 1.12.0+dfsg-1 → armhf → 2020-11-23 07:25:09

sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019

+==============================================================================+
| r-bioc-rhdf5lib 1.12.0+dfsg-1 (armhf)        Mon, 23 Nov 2020 07:13:04 +0000 |
+==============================================================================+

Package: r-bioc-rhdf5lib
Version: 1.12.0+dfsg-1
Source Version: 1.12.0+dfsg-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-36d2e189-e9b3-4209-9a05-53a7b44337a8' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-rhdf5lib-hkqiN1/resolver-Rspqap' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.9 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.8 MB in 10s (2514 kB/s)
Reading package lists...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-bioc-rhdf5lib' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5lib.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5lib.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 48.0 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main r-bioc-rhdf5lib 1.12.0+dfsg-1 (dsc) [2156 B]
Get:2 http://172.17.0.1/private bullseye-staging/main r-bioc-rhdf5lib 1.12.0+dfsg-1 (tar) [39.5 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main r-bioc-rhdf5lib 1.12.0+dfsg-1 (diff) [6356 B]
Fetched 48.0 kB in 0s (252 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-rhdf5lib-hkqiN1/r-bioc-rhdf5lib-1.12.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-rhdf5lib-hkqiN1' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, libhdf5-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, libhdf5-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [389 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [470 B]
Fetched 1816 B in 0s (49.3 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
  fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
  gfortran-10 groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev
  libaec0 libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev
  libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl
  libcroco3 libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1
  libdebhelper-perl libdevel-callchecker-perl libdevel-globaldestruction-perl
  libdevel-overloadinfo-perl libdevel-stacktrace-perl
  libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
  libencode-locale-perl libeval-closure-perl libexpat1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-10-dev libgfortran5 libglib2.0-0
  libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev
  libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100
  libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67
  libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
  libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl
  libmodule-runtime-perl libmoose-perl libmro-compat-perl
  libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
  libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
  libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
  libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
  libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
  libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
  libsigsegv2 libsm6 libssh2-1 libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-override-perl libswitch-perl libsz2 libtcl8.6
  libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
  libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6
  libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
  libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config po-debconf
  r-base-core r-base-dev sensible-utils ucf unzip x11-common xauth xdg-utils
  zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc
  libasprintf-dev libgettextpo-dev gfortran-doc gfortran-10-doc
  libcoarrays-dev groff liblapack-doc libhdf5-doc icu-doc liblzma-doc
  ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc
  gcj-jdk libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser
  libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
  texlive-base texlive-latex-base texlive-plain-generic
  texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
  texlive-latex-recommended texlive-latex-extra texinfo
Recommended packages:
  devscripts curl | wget | lynx bzip2-doc libclass-c3-xs-perl
  libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs libclone-perl libdevel-partialdump-perl libgpm2 libpng-tools
  publicsuffix libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
  libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
  x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
  fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
  gfortran-10 groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev
  libaec0 libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev
  libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl
  libcroco3 libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1
  libdebhelper-perl libdevel-callchecker-perl libdevel-globaldestruction-perl
  libdevel-overloadinfo-perl libdevel-stacktrace-perl
  libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
  libencode-locale-perl libeval-closure-perl libexpat1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-10-dev libgfortran5 libglib2.0-0
  libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev
  libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100
  libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67
  libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
  libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl
  libmodule-runtime-perl libmoose-perl libmro-compat-perl
  libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
  libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
  libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
  libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
  libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
  libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
  libsigsegv2 libsm6 libssh2-1 libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-override-perl libswitch-perl libsz2 libtcl8.6
  libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
  libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6
  libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
  libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config po-debconf
  r-base-core r-base-dev sbuild-build-depends-main-dummy sensible-utils ucf
  unzip x11-common xauth xdg-utils zip zlib1g-dev
0 upgraded, 178 newly installed, 0 to remove and 13 not upgraded.
Need to get 137 MB of archives.
After this operation, 449 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf bsdextrautils armhf 2.36.1-1 [133 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1h-1 [812 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20200601 [158 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-1 [162 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.2-1 [1176 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.2 [578 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf unzip armhf 6.0-25 [152 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf xdg-utils all 1.1.3-2 [74.6 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2 [259 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.2+dfsg-4 [345 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.12-1 [311 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.12-1 [700 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.14-2 [110 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.14-2 [101 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.41.0-3 [63.0 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.72.0-1 [300 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-1.1 [121 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.0-16+rpi1 [232 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.7-1 [1366 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3+b5 [36.5 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.46.2-3 [172 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.46.2-3 [55.7 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.46.2-3 [46.7 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.10+dfsg-1 [886 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+21 [252 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.10-1 [678 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf r-base-core armhf 4.0.3-1 [24.7 MB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-10-dev armhf 10.2.0-16+rpi1 [278 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf gfortran-10 armhf 10.2.0-16+rpi1 [56.1 MB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:10.2.0-1+rpi1 [1428 B]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2+20200918-1 [79.5 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libncurses-dev armhf 6.2+20200918-1 [290 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libncurses5-dev armhf 6.2+20200918-1 [940 B]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libreadline-dev armhf 8.1~rc2-2 [121 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.5-1.1 [241 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:2.0.5-1.1 [66.0 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.34-7 [190 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.34-7 [181 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix2 armhf 10.34-7 [44.7 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.34-7 [614 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 67.1-4 [172 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 67.1-4 [9248 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf r-base-dev all 4.0.3-1 [4484 B]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libencode-locale-perl all 1.05-1 [13.7 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libtimedate-perl all 2.3300-1 [39.2 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libio-html-perl all 1.001-1 [17.6 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf liburi-perl all 5.05-1 [90.3 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libhttp-message-perl all 6.26-1 [79.4 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf libsub-install-perl all 0.928-1 [11.4 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf libdata-optlist-perl all 0.110-1 [10.6 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libdynaloader-functions-perl all 0.003-1 [12.6 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf libmodule-implementation-perl all 0.09-1 [12.9 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf libpackage-stash-perl all 0.38-1 [21.7 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b4 [14.3 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf libdevel-globaldestruction-perl all 0.14-1 [8084 B]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf libalgorithm-c3-perl all 0.10-1 [12.0 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf libclass-c3-perl all 0.34-1 [22.4 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf libmro-compat-perl all 0.13-1 [12.2 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf libdevel-overloadinfo-perl all 0.005-1 [7212 B]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf libsub-exporter-perl all 0.987-1 [47.2 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf libdist-checkconflicts-perl all 0.11-1 [10.8 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1 [6882 B]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1 [16.4 kB]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.5 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf libmoose-perl armhf 2.2013-1+b1 [806 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf libb-hooks-endofscope-perl all 0.24-1 [18.6 kB]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.72.0-1 [297 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf libwww-curl-perl armhf 4.17-7+b1 [58.9 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:167 http://172.17.0.1/private bullseye-staging/main armhf dh-r all 20201117 [40.8 kB]
Get:168 http://172.17.0.1/private bullseye-staging/main armhf hdf5-helpers armhf 1.10.6+repack-2 [40.0 kB]
Get:169 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:170 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:171 http://172.17.0.1/private bullseye-staging/main armhf libaec-dev armhf 1.0.4-1 [17.8 kB]
Get:172 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103-1 armhf 1.10.6+repack-2 [1184 kB]
Get:173 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.6+repack-2 [128 kB]
Get:174 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-fortran-102 armhf 1.10.6+repack-2 [93.0 kB]
Get:175 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-100 armhf 1.10.6+repack-2 [78.1 kB]
Get:176 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.6+repack-2 [49.8 kB]
Get:177 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.6+repack-2 [36.9 kB]
Get:178 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-dev armhf 1.10.6+repack-2 [2167 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package bsdextrautils.
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Selecting previously unselected package groff-base.
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Unpacking gettext-base (0.19.8.1-10) ...
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Moving old data out of the way
Unpacking ucf (3.0043) ...
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Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
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Unpacking m4 (1.4.18-4) ...
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Unpacking autoconf (2.69-11.1) ...
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Unpacking autotools-dev (20180224.1) ...
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Unpacking automake (1:1.16.2-4) ...
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Unpacking autopoint (0.19.8.1-10) ...
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Unpacking openssl (1.1.1h-1) ...
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Unpacking ca-certificates (20200601) ...
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Unpacking dctrl-tools (2.24-3) ...
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Unpacking libtool (2.4.6-14) ...
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Unpacking libdebhelper-perl (13.2.1) ...
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Unpacking libarchive-zip-perl (1.68-1) ...
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Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
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Unpacking libfile-stripnondeterminism-perl (1.9.0-1) ...
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Unpacking libelf1:armhf (0.182-1) ...
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Selecting previously unselected package libglib2.0-0:armhf.
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Unpacking libglib2.0-0:armhf (2.66.2-1) ...
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Unpacking libicu67:armhf (67.1-4) ...
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Unpacking libxml2:armhf (2.9.10+dfsg-6.2) ...
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Unpacking unzip (6.0-25) ...
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Unpacking libpaper1:armhf (1.1.28) ...
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Unpacking libexpat1:armhf (2.2.10-1) ...
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Selecting previously unselected package libpixman-1-0:armhf.
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Setting up libexpat1:armhf (2.2.10-1) ...
Setting up libpcrecpp0v5:armhf (2:8.39-13) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up libpixman-1-0:armhf (0.36.0-1) ...
Setting up libfile-which-perl (1.23-1) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up libpsl5:armhf (0.21.0-1.1) ...
Setting up bsdextrautils (2.36.1-1) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libpcre16-3:armhf (2:8.39-13) ...
Setting up hdf5-helpers (1.10.6+repack-2) ...
Setting up libicu67:armhf (67.1-4) ...
Setting up libdynaloader-functions-perl (0.003-1) ...
Setting up libdatrie1:armhf (0.2.12-3+b5) ...
Setting up libmagic-mgc (1:5.38-5) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-1+b3) ...
Setting up libglib2.0-0:armhf (2.66.2-1) ...
No schema files found: doing nothing.
Setting up unzip (6.0-25) ...
Setting up libdebhelper-perl (13.2.1) ...
Setting up libbrotli1:armhf (1.0.9-2) ...
Setting up liblwp-mediatypes-perl (6.04-1) ...
Setting up x11-common (1:7.7+21) ...
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libtry-tiny-perl (0.30-1) ...
Setting up libnghttp2-14:armhf (1.41.0-3) ...
Setting up libmagic1:armhf (1:5.38-5) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up libencode-locale-perl (1.05-1) ...
Setting up file (1:5.38-5) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libpcre2-16-0:armhf (10.34-7) ...
Setting up libaec0:armhf (1.0.4-1) ...
Setting up libsub-install-perl (0.928-1) ...
Setting up zip (3.0-11) ...
Setting up libpackage-stash-xs-perl (0.29-1+b2) ...
Setting up autotools-dev (20180224.1) ...
Setting up libpcre2-32-0:armhf (10.34-7) ...
Setting up libblas3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libalgorithm-c3-perl (0.10-1) ...
Setting up libjpeg62-turbo:armhf (1:2.0.5-1.1) ...
Setting up libswitch-perl (2.17-2) ...
Setting up libx11-data (2:1.6.12-1) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.0.5-1.1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.2+20200918-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libfribidi0:armhf (1.0.8-2) ...
Setting up libpng16-16:armhf (1.6.37-3) ...
Setting up libpcre32-3:armhf (2:8.39-13) ...
Setting up libvariable-magic-perl (0.62-1+b3) ...
Setting up libio-html-perl (1.001-1) ...
Setting up libtcl8.6:armhf (8.6.10+dfsg-1) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libwebp6:armhf (0.6.1-2) ...
Setting up libb-hooks-op-check-perl (0.22-1+b4) ...
Setting up icu-devtools (67.1-4) ...
Setting up pkg-config (0.29.2-1) ...
Setting up fonts-dejavu-core (2.37-2) ...
Setting up libpcre2-posix2:armhf (10.34-7) ...
Setting up libparams-util-perl (1.102-1+b1) ...
Setting up libgfortran5:armhf (10.2.0-16+rpi1) ...
Setting up libsub-exporter-progressive-perl (0.001013-1) ...
Setting up libtimedate-perl (2.3300-1) ...
Setting up liblzma-dev:armhf (5.2.4-1) ...
Setting up libsub-name-perl (0.26-1+b1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libthai-data (0.1.28-3) ...
Setting up libgfortran-10-dev:armhf (10.2.0-16+rpi1) ...
Setting up libdevel-globaldestruction-perl (0.14-1) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up libdevel-stacktrace-perl (2.0400-1) ...
Setting up libtiff5:armhf (4.1.0+git191117-2) ...
Setting up openssl (1.1.1h-1) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libelf1:armhf (0.182-1) ...
Setting up libicu-dev:armhf (67.1-4) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.2) ...
Setting up xdg-utils (1.1.3-2) ...
Setting up liburi-perl (5.05-1) ...
Setting up libblas-dev:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up libsz2:armhf (1.0.4-1) ...
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-4) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.2+20200918-1) ...
Setting up libxcb1:armhf (1.14-2) ...
Setting up libpcre2-dev:armhf (10.34-7) ...
Setting up libtool (2.4.6-14) ...
Setting up libxcb-render0:armhf (1.14-2) ...
Setting up libpcre3-dev:armhf (2:8.39-13) ...
Setting up libpng-dev:armhf (1.6.37-3) ...
Setting up libaec-dev:armhf (1.0.4-1) ...
Setting up libjpeg-dev (1:2.0.5-1.1) ...
Setting up m4 (1.4.18-4) ...
Setting up libcurl3-gnutls:armhf (7.72.0-1) ...
Setting up libxcb-shm0:armhf (1.14-2) ...
Setting up libclass-c3-perl (0.34-1) ...
Setting up libreadline-dev:armhf (8.1~rc2-2) ...
Setting up libdevel-callchecker-perl (0.008-1+b2) ...
Setting up libthai0:armhf (0.1.28-3) ...
Setting up ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
126 added, 0 removed; done.
Setting up libfreetype6:armhf (2.10.2+dfsg-4) ...
Setting up liblapack-dev:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up gfortran-10 (10.2.0-16+rpi1) ...
Setting up libdata-optlist-perl (0.110-1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up ucf (3.0043) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up libhdf5-103-1:armhf (1.10.6+repack-2) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up libncurses5-dev:armhf (6.2+20200918-1) ...
Setting up libhdf5-cpp-103-1:armhf (1.10.6+repack-2) ...
Setting up libcurl4:armhf (7.72.0-1) ...
Setting up libx11-6:armhf (2:1.6.12-1) ...
Setting up libharfbuzz0b:armhf (2.6.7-1) ...
Setting up libmro-compat-perl (0.13-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2+b3) ...
Setting up libsub-exporter-perl (0.987-1) ...
Setting up libhttp-message-perl (6.26-1) ...
Setting up libeval-closure-perl (0.14-1) ...
Setting up libhdf5-hl-100:armhf (1.10.6+repack-2) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libpaper1:armhf (1.1.28) ...

Creating config file /etc/papersize with new version
Setting up gettext (0.19.8.1-10) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up fontconfig-config (2.13.1-4.2) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libwww-curl-perl (4.17-7+b1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:10.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.6+repack-2) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up libhdf5-fortran-102:armhf (1.10.6+repack-2) ...
Setting up libdist-checkconflicts-perl (0.11-1) ...
Setting up libxt6:armhf (1:1.2.0-1) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libhdf5-hl-fortran-100:armhf (1.10.6+repack-2) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up libmodule-implementation-perl (0.09-1) ...
Setting up libpackage-stash-perl (0.38-1) ...
Setting up po-debconf (1.0.21) ...
Setting up libtk8.6:armhf (8.6.10-1) ...
Setting up libpango-1.0-0:armhf (1.46.2-3) ...
Setting up libmodule-runtime-conflicts-perl (0.003-1) ...
Setting up libcairo2:armhf (1.16.0-4) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up libhdf5-dev (1.10.6+repack-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libpackage-deprecationmanager-perl (0.17-1) ...
Setting up libdevel-overloadinfo-perl (0.005-1) ...
Setting up libclass-load-xs-perl (0.10-1+b4) ...
Setting up libpangoft2-1.0-0:armhf (1.46.2-3) ...
Setting up libb-hooks-endofscope-perl (0.24-1) ...
Setting up libpangocairo-1.0-0:armhf (1.46.2-3) ...
Setting up libmoose-perl (2.2013-1+b1) ...
Setting up r-base-core (4.0.3-1) ...

Creating config file /etc/R/Renviron with new version
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up r-base-dev (4.0.3-1) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.2.1) ...
Setting up dh-r (20201117) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-4+rpi1) ...
Processing triggers for ca-certificates (20200601) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.35.1-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-16+rpi1 gcc-10_10.2.0-16+rpi1 libc6-dev_2.31-4+rpi1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc2-1 binutils_2.35.1-2+rpi1 binutils-arm-linux-gnueabihf_2.35.1-2+rpi1 binutils-common_2.35.1-2+rpi1 bsdextrautils_2.36.1-1 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 ca-certificates_20200601 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-16+rpi1 dash_0.5.11+git20200708+dd9ef66-2 dctrl-tools_2.24-3 debconf_1.5.74 debhelper_13.2.1 debianutils_4.11.2 dh-autoreconf_19 dh-r_20201117 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 file_1:5.38-5 findutils_4.7.0+git20201010-2 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-16+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-16+rpi1 gcc-10-base_10.2.0-16+rpi1 gcc-7-base_7.5.0-6+rpi1+b1 gcc-8-base_8.4.0-4+rpi1+b1 gcc-9-base_9.3.0-18+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran_4:10.2.0-1+rpi1 gfortran-10_10.2.0-16+rpi1 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hdf5-helpers_1.10.6+repack-2 hostname_3.23 icu-devtools_67.1-4 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libalgorithm-c3-perl_0.10-1 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libasan6_10.2.0-16+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-16+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libb-hooks-endofscope-perl_0.24-1 libb-hooks-op-check-perl_0.22-1+b4 libbinutils_2.35.1-2+rpi1 libblas-dev_3.9.0-3 libblas3_3.9.0-3 libblkid1_2.36-3 libbrotli1_1.0.9-2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.31-4+rpi1 libc-dev-bin_2.31-4+rpi1 libc6_2.31-4+rpi1 libc6-dev_2.31-4+rpi1 libcairo2_1.16.0-4 libcap-ng0_0.7.9-2.2 libcc1-0_10.2.0-16+rpi1 libclass-c3-perl_0.34-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-1+b4 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2+rpi1 libctf0_2.35.1-2+rpi1 libcurl3-gnutls_7.72.0-1 libcurl4_7.72.0-1 libdata-optlist-perl_0.110-1 libdatrie1_0.2.12-3+b5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdevel-callchecker-perl_0.008-1+b2 libdevel-globaldestruction-perl_0.14-1 libdevel-overloadinfo-perl_0.005-1 libdevel-stacktrace-perl_2.0400-1 libdist-checkconflicts-perl_0.11-1 libdpkg-perl_1.20.5+rpi1 libdynaloader-functions-perl_0.003-1 libelf1_0.182-1 libencode-locale-perl_1.05-1 libeval-closure-perl_0.14-1 libexpat1_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.2+dfsg-4 libfribidi0_1.0.8-2 libgcc-10-dev_10.2.0-16+rpi1 libgcc-s1_10.2.0-16+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran-10-dev_10.2.0-16+rpi1 libgfortran5_10.2.0-16+rpi1 libglib2.0-0_2.66.2-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-16+rpi1 libgpg-error0_1.38-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.17-10+b3 libharfbuzz0b_2.6.7-1 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libhogweed6_3.6-2 libhttp-date-perl_6.05-1 libhttp-message-perl_6.26-1 libice6_2:1.0.10-1 libicu-dev_67.1-4 libicu67_67.1-4 libidn2-0_2.3.0-3 libio-html-perl_1.001-1 libisl22_0.22.1-1 libjbig0_2.1-3.1+b2 libjpeg-dev_1:2.0.5-1.1 libjpeg62-turbo_1:2.0.5-1.1 libjpeg62-turbo-dev_1:2.0.5-1.1 libk5crypto3_1.17-10+b3 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10+b3 libkrb5support0_1.17-10+b3 libksba8_1.4.0-2 liblapack-dev_3.9.0-3 liblapack3_3.9.0-3 libldap-2.4-2_2.4.56+dfsg-1+rpi1+b1 liblocale-gettext-perl_1.07-4+b1 liblwp-mediatypes-perl_6.04-1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmodule-implementation-perl_0.09-1 libmodule-runtime-conflicts-perl_0.003-1 libmodule-runtime-perl_0.016-1 libmoose-perl_2.2013-1+b1 libmount1_2.36-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmro-compat-perl_0.13-1 libnamespace-clean-perl_0.27-1 libncurses-dev_6.2+20200918-1 libncurses5-dev_6.2+20200918-1 libncurses6_6.2+20200918-1 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnghttp2-14_1.41.0-3 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.21-2 libpackage-deprecationmanager-perl_0.17-1 libpackage-stash-perl_0.38-1 libpackage-stash-xs-perl_0.29-1+b2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpango-1.0-0_1.46.2-3 libpangocairo-1.0-0_1.46.2-3 libpangoft2-1.0-0_1.46.2-3 libpaper-utils_1.1.28 libpaper1_1.1.28 libparams-classify-perl_0.015-1+b3 libparams-util-perl_1.102-1+b1 libpcre16-3_2:8.39-13 libpcre2-16-0_10.34-7 libpcre2-32-0_10.34-7 libpcre2-8-0_10.34-7 libpcre2-dev_10.34-7 libpcre2-posix2_10.34-7 libpcre3_2:8.39-13 libpcre3-dev_2:8.39-13 libpcre32-3_2:8.39-13 libpcrecpp0v5_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpixman-1-0_0.36.0-1 libpng-dev_1.6.37-3 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.1 libreadline-dev_8.1~rc2-2 libreadline8_8.1~rc2-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 libsub-exporter-perl_0.987-1 libsub-exporter-progressive-perl_0.001013-1 libsub-identify-perl_0.14-1+b3 libsub-install-perl_0.928-1 libsub-name-perl_0.26-1+b1 libsub-override-perl_0.09-2 libswitch-perl_2.17-2 libsystemd0_246.6-2+rpi1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtcl8.6_8.6.10+dfsg-1 libtext-iconv-perl_1.7-7+b1 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.1.0+git191117-2 libtimedate-perl_2.3300-1 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtk8.6_8.6.10-1 libtool_2.4.6-14 libtry-tiny-perl_0.30-1 libubsan1_10.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-2+rpi1 libunistring2_0.9.10-4 liburi-perl_5.05-1 libuuid1_2.36-3 libvariable-magic-perl_0.62-1+b3 libwebp6_0.6.1-2 libwww-curl-perl_4.17-7+b1 libwww-curl-simple-perl_0.100191-2 libx11-6_2:1.6.12-1 libx11-data_2:1.6.12-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.14-2 libxcb-shm0_1.14-2 libxcb1_1.14-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.10+dfsg-6.2 libxmuu1_2:1.1.2-2+b3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.2.0-1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 openssl_1.1.1h-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21 r-base-core_4.0.3-1 r-base-dev_4.0.3-1 raspbian-archive-keyring_20120528.2 readline-common_8.1~rc2-2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020d-1 ucf_3.0043 unzip_6.0-25 util-linux_2.36-3 x11-common_1:7.7+21 xauth_1:1.0.10-1 xdg-utils_1.1.3-2 xz-utils_5.2.4-1 zip_3.0-11 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

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Hash: SHA512

Format: 3.0 (quilt)
Source: r-bioc-rhdf5lib
Binary: r-bioc-rhdf5lib
Architecture: any
Version: 1.12.0+dfsg-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://bioconductor.org/packages/Rhdf5lib/
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5lib
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5lib.git
Testsuite: autopkgtest, autopkgtest-pkg-r
Testsuite-Triggers: r-cran-knitr, r-cran-rmarkdown
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, libhdf5-dev
Package-List:
 r-bioc-rhdf5lib deb gnu-r optional arch=any
Checksums-Sha1:
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.XBgZVCU_/trustedkeys.kbx': General error
gpgv: Signature made Sun Nov  1 13:27:01 2020 UTC
gpgv:                using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-rhdf5lib_1.12.0+dfsg-1.dsc
dpkg-source: info: extracting r-bioc-rhdf5lib in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-rhdf5lib_1.12.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-rhdf5lib_1.12.0+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libhdf5-dev.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=1ec3ff19654148fab3a02153247d5928
JOURNAL_STREAM=8:145870
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-36d2e189-e9b3-4209-9a05-53a7b44337a8
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c17138
XDG_SESSION_TYPE=unspecified

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-bioc-rhdf5lib
dpkg-buildpackage: info: source version 1.12.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --buildsystem R
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
rm -f src/config.log
rm -f src/config.status
rm -f confdefs.h
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules binary-arch
dh binary-arch --buildsystem R
   dh_update_autotools_config -a -O--buildsystem=R
   dh_autoreconf -a -O--buildsystem=R
   dh_auto_configure -a -O--buildsystem=R
   dh_auto_build -a -O--buildsystem=R
   dh_auto_test -a -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=R
   dh_prep -a -O--buildsystem=R
   dh_auto_install -a -O--buildsystem=R
I: R packages needed for DEP8: knitr, rmarkdown
I: R Package: Rhdf5lib Version: 1.12.0
I: Building using R version 4.0.3-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Sun, 01 Nov 2020 14:20:27 +0100
	mkdir -p /<<BUILDDIR>>/r-bioc-rhdf5lib-1.12.0\+dfsg/debian/r-bioc-rhdf5lib/usr/lib/R/site-library
	R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-rhdf5lib-1.12.0\+dfsg/debian/r-bioc-rhdf5lib/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 01 Nov 2020 14:20:27 +0100'"
* installing *source* package ‘Rhdf5lib’ ...
** using staged installation
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++11 accepts -g... yes
checking whether C++ compiler accepts -w... yes
checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for zlib.h... yes
checking curl/curl.h usability... no
checking curl/curl.h presence... no
checking for curl/curl.h... no
checking openssl/evp.h usability... no
checking openssl/evp.h presence... no
checking for openssl/evp.h... no
checking openssl/hmac.h usability... no
checking openssl/hmac.h presence... no
checking for openssl/hmac.h... no
checking openssl/sha.h usability... no
checking openssl/sha.h presence... no
checking for openssl/sha.h... no
S3_VFD=--enable-ros3-vfd=no
untarring hdf5small_cxx_hl_1.10.6.tar.gz ...
gzip: hdf5small_cxx_hl_1.10.6.tar.gz: No such file or directory
tar: This does not look like a tar archive
tar: Exiting with failure status due to previous errors
configure:    HDF5_INCLUDE=/usr/include/hdf5/serial
configure:    HDF5_CXX_INCLUDE=/usr/include/hdf5/serial
configure:    HDF5_HL_INCLUDE=/usr/include/hdf5/serial
configure:    HDF5_HL_CXX_INCLUDE=/usr/include/hdf5/serial
configure:    HDF5_LIB=/usr/lib/arm-linux-gnueabihf/hdf5/serial/
configure:    HDF5_CXX_LIB=/usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5_cpp.a
configure:    HDF5_HL_LIB=/usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5_hl.a
configure:    HDF5_HL_CXX_LIB=/usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5_hl_cpp.a
configure:    SZIP_LIB=/usr/lib/arm-linux-gnueabihf/libsz.a
sed: can't read confdefs.h: No such file or directory
configure: creating ./config.status
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-sMz9ls/r-base-4.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c Rhdf5lib.c -o Rhdf5lib.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o Rhdf5lib.so Rhdf5lib.o -L/usr/lib/arm-linux-gnueabihf/hdf5/serial/ -lhdf5 -lsz -lz -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-rhdf5lib/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5lib-1.12.0+dfsg/00new/Rhdf5lib/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rhdf5lib)
W: Ignoring specified R dependency: R (>= 3.3.0)
I: Using r-cran-knitr for Recommends:knitr
I: Using r-cran-rmarkdown for Recommends:rmarkdown
W: Cannot find a debian package for Suggests:BiocStyle
I: Using r-cran-tinytest for Suggests:tinytest
I: BioConductor API version: r-api-bioc-3.12
I: Use r-bioc-rhdf5lib as Debian binary package for variables substitution
   dh_installdocs -a -O--buildsystem=R
   dh_installchangelogs -a -O--buildsystem=R
   dh_installsystemduser -a -O--buildsystem=R
   dh_perl -a -O--buildsystem=R
   dh_link -a -O--buildsystem=R
   dh_strip_nondeterminism -a -O--buildsystem=R
   dh_compress -a -O--buildsystem=R
   dh_fixperms -a -O--buildsystem=R
   dh_missing -a -O--buildsystem=R
   dh_dwz -a -a -O--buildsystem=R
   dh_strip -a -a -O--buildsystem=R
   dh_makeshlibs -a -a -O--buildsystem=R
   dh_shlibdeps -a -a -O--buildsystem=R
   dh_installdeb -a -O--buildsystem=R
   dh_gencontrol -a -O--buildsystem=R
   dh_md5sums -a -O--buildsystem=R
   dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-rhdf5lib-dbgsym' in '../r-bioc-rhdf5lib-dbgsym_1.12.0+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-rhdf5lib' in '../r-bioc-rhdf5lib_1.12.0+dfsg-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> >../r-bioc-rhdf5lib_1.12.0+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-11-23T07:25:03Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-bioc-rhdf5lib_1.12.0+dfsg-1_armhf.changes:
--------------------------------------------

Format: 1.8
Date: Sun, 01 Nov 2020 14:20:27 +0100
Source: r-bioc-rhdf5lib
Binary: r-bioc-rhdf5lib r-bioc-rhdf5lib-dbgsym
Architecture: armhf
Version: 1.12.0+dfsg-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
 r-bioc-rhdf5lib - GNU R hdf5 library
Changes:
 r-bioc-rhdf5lib (1.12.0+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
 .
   [ Dylan Aïssi ]
   * New upstream version
 .
   [ Steffen Moeller ]
   * Cleaner clean to help routine-update.
Checksums-Sha1:
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 c01f54279540517fa3dcb83e572b7ac49bc2c657 9951 r-bioc-rhdf5lib_1.12.0+dfsg-1_armhf.buildinfo
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Files:
 aaed073a3b3bc6cf78c6f4bed0bb8753 4396 debug optional r-bioc-rhdf5lib-dbgsym_1.12.0+dfsg-1_armhf.deb
 22584f6a7f24f6d63f3f0e74b4fc5371 9951 gnu-r optional r-bioc-rhdf5lib_1.12.0+dfsg-1_armhf.buildinfo
 c7b7346837ce3b3931a94c1dee533ac7 27320 gnu-r optional r-bioc-rhdf5lib_1.12.0+dfsg-1_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: r-bioc-rhdf5lib
Binary: r-bioc-rhdf5lib r-bioc-rhdf5lib-dbgsym
Architecture: armhf
Version: 1.12.0+dfsg-1
Checksums-Md5:
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Mon, 23 Nov 2020 07:25:02 +0000
Build-Path: /<<PKGBUILDDIR>>
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 patch (= 2.7.6-6),
 perl (= 5.32.0-5),
 perl-base (= 5.32.0-5),
 perl-modules-5.32 (= 5.32.0-5),
 pkg-config (= 0.29.2-1),
 po-debconf (= 1.0.21),
 r-base-core (= 4.0.3-1),
 r-base-dev (= 4.0.3-1),
 readline-common (= 8.1~rc2-2),
 sed (= 4.7-1),
 sensible-utils (= 0.0.12+nmu1),
 sysvinit-utils (= 2.96-5),
 tar (= 1.30+dfsg-7),
 tzdata (= 2020d-1),
 ucf (= 3.0043),
 unzip (= 6.0-25),
 util-linux (= 2.36-3),
 x11-common (= 1:7.7+21),
 xauth (= 1:1.0.10-1),
 xdg-utils (= 1.1.3-2),
 xz-utils (= 5.2.4-1),
 zip (= 3.0-11),
 zlib1g (= 1:1.2.11.dfsg-2),
 zlib1g-dev (= 1:1.2.11.dfsg-2)
Environment:
 DEB_BUILD_OPTIONS="parallel=4"
 LANG="en_GB.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1604236827"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-bioc-rhdf5lib-dbgsym_1.12.0+dfsg-1_armhf.deb
----------------------------------------------

 new Debian package, version 2.0.
 size 4396 bytes: control archive=544 bytes.
     407 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: r-bioc-rhdf5lib-dbgsym
 Source: r-bioc-rhdf5lib
 Version: 1.12.0+dfsg-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 17
 Depends: r-bioc-rhdf5lib (= 1.12.0+dfsg-1)
 Section: debug
 Priority: optional
 Description: debug symbols for r-bioc-rhdf5lib
 Build-Ids: 9fc31490d932b8039a77b7ffb155b2036fdf4767

drwxr-xr-x root/root         0 2020-11-01 13:20 ./
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/lib/
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/lib/debug/.build-id/9f/
-rw-r--r-- root/root      6352 2020-11-01 13:20 ./usr/lib/debug/.build-id/9f/c31490d932b8039a77b7ffb155b2036fdf4767.debug
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/share/
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-11-01 13:20 ./usr/share/doc/r-bioc-rhdf5lib-dbgsym -> r-bioc-rhdf5lib


r-bioc-rhdf5lib_1.12.0+dfsg-1_armhf.deb
---------------------------------------

 new Debian package, version 2.0.
 size 27320 bytes: control archive=1508 bytes.
     591 bytes,    16 lines      control              
    2439 bytes,    30 lines      md5sums              
 Package: r-bioc-rhdf5lib
 Version: 1.12.0+dfsg-1
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 90
 Depends: r-base-core (>= 4.0.3-1), r-api-4.0, r-api-bioc-3.12, libc6 (>= 2.4), libhdf5-103-1
 Recommends: r-cran-knitr, r-cran-rmarkdown
 Suggests: r-cran-tinytest
 Section: gnu-r
 Priority: optional
 Homepage: https://bioconductor.org/packages/Rhdf5lib/
 Description: GNU R hdf5 library
  This GNU R package provides an interface to the
  C and C++ hdf5 libraries.
  .
  HDF5 is a file format and library for storing scientific data.

drwxr-xr-x root/root         0 2020-11-01 13:20 ./
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drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/lib/
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/lib/R/
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/lib/R/site-library/
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/
-rw-r--r-- root/root       857 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/DESCRIPTION
-rw-r--r-- root/root       280 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/INDEX
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/Meta/
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-rw-r--r-- root/root       962 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/Meta/package.rds
-rw-r--r-- root/root       251 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/Meta/vignette.rds
-rw-r--r-- root/root       179 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/NAMESPACE
-rw-r--r-- root/root       541 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/NEWS
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-rw-r--r-- root/root      1058 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/R/Rhdf5lib
-rw-r--r-- root/root      4309 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/R/Rhdf5lib.rdb
-rw-r--r-- root/root       317 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/R/Rhdf5lib.rdx
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-rw-r--r-- root/root       388 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/doc/Rhdf5lib.R
-rw-r--r-- root/root      4555 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/doc/Rhdf5lib.Rmd
-rw-r--r-- root/root      6652 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/doc/downloadHDF5.R
-rw-r--r-- root/root      6784 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/doc/downloadHDF5.Rmd
-rw-r--r-- root/root      1852 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/doc/index.html
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/help/
-rw-r--r-- root/root        95 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/help/AnIndex
-rw-r--r-- root/root      4617 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/help/Rhdf5lib.rdb
-rw-r--r-- root/root       253 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/help/Rhdf5lib.rdx
-rw-r--r-- root/root       128 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/help/aliases.rds
-rw-r--r-- root/root       181 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/help/paths.rds
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/html/
-rw-r--r-- root/root      1501 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/html/00Index.html
-rw-r--r-- root/root      1335 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/html/R.css
lrwxrwxrwx root/root         0 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/include -> ../../../../include/hdf5/serial
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/libs/
-rw-r--r-- root/root      5496 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/libs/Rhdf5lib.so
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/tinytest/
-rw-r--r-- root/root        88 2020-11-01 13:20 ./usr/lib/R/site-library/Rhdf5lib/tinytest/test_library_version.R
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/share/
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-11-01 13:20 ./usr/share/doc/r-bioc-rhdf5lib/
-rw-r--r-- root/root       695 2020-11-01 13:20 ./usr/share/doc/r-bioc-rhdf5lib/changelog.Debian.gz
-rw-r--r-- root/root      9785 2020-11-01 13:20 ./usr/share/doc/r-bioc-rhdf5lib/copyright


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| Post Build                                                                   |
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| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
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Build Architecture: armhf
Build Type: any
Build-Space: 984
Build-Time: 29
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 666
Job: r-bioc-rhdf5lib_1.12.0+dfsg-1
Machine Architecture: armhf
Package: r-bioc-rhdf5lib
Package-Time: 719
Source-Version: 1.12.0+dfsg-1
Space: 984
Status: successful
Version: 1.12.0+dfsg-1
--------------------------------------------------------------------------------
Finished at 2020-11-23T07:25:03Z
Build needed 00:11:59, 984k disk space
Raspbian Package Auto-Building

Build log for r-bioc-rhdf5lib (1.12.0+dfsg-1) on armhf
