r-bioc-rhdf5filters →
1.4.0+dfsg-3 →
armhf → 2021-09-29 13:28:08
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| r-bioc-rhdf5filters 1.4.0+dfsg-3 (armhf) Wed, 29 Sep 2021 13:09:18 +0000 |
+==============================================================================+
Package: r-bioc-rhdf5filters
Version: 1.4.0+dfsg-3
Source Version: 1.4.0+dfsg-3
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-083b2ea3-08e4-400b-bf89-48b2f0857e20' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Ign:2 http://172.17.0.1/private bookworm-staging/main Sources
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Fetched 15.5 MB in 1min 5s (239 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-rhdf5filters' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5filters.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5filters.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 85.0 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main r-bioc-rhdf5filters 1.4.0+dfsg-3 (dsc) [2205 B]
Get:2 http://172.17.0.1/private bookworm-staging/main r-bioc-rhdf5filters 1.4.0+dfsg-3 (tar) [77.7 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main r-bioc-rhdf5filters 1.4.0+dfsg-3 (diff) [5064 B]
Fetched 85.0 kB in 0s (554 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-rhdf5filters-AffHYG/r-bioc-rhdf5filters-1.4.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-rhdf5filters-AffHYG' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-WOPlcY/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-WOPlcY/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-WOPlcY/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-WOPlcY/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-WOPlcY/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-WOPlcY/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-WOPlcY/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-WOPlcY/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-WOPlcY/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2512 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-WOPlcY/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-WOPlcY/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 6 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-WOPlcY/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.8 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-rhdf5lib, libbz2-dev, libblosc-dev, libhdf5-dev
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-rhdf5lib, libbz2-dev, libblosc-dev, libhdf5-dev
dpkg-deb: building package 'sbuild-build-depends-r-bioc-rhdf5filters-dummy' in '/<<BUILDDIR>>/resolver-WOPlcY/apt_archive/sbuild-build-depends-r-bioc-rhdf5filters-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-rhdf5filters-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-WOPlcY/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-WOPlcY/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-WOPlcY/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-WOPlcY/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-WOPlcY/apt_archive ./ Sources [536 B]
Get:5 copy:/<<BUILDDIR>>/resolver-WOPlcY/apt_archive ./ Packages [615 B]
Fetched 2484 B in 1s (3413 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-WOPlcY/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-WOPlcY/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install r-bioc-rhdf5filters build dependencies (apt-based resolver)
-------------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-10 groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev
libaec0 libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libblosc-dev libblosc1
libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
libsigsegv2 libsm6 libsnappy1v5 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libsz2 libtcl8.6
libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6
libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config po-debconf
r-base-core r-base-dev r-bioc-biocgenerics r-bioc-rhdf5lib sensible-utils
ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-10-doc libcoarrays-dev groff liblapack-doc libhdf5-doc
icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6
tk8.6 libtool-doc gcj-jdk libwww-perl libcurl4-gnutls-dev m4-doc apparmor
less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib
r-base-html texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase
r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray
r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy
r-bioc-deseq2 r-bioc-annotate r-cran-tinytest r-cran-mockery
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-knitr
r-cran-rmarkdown r-bioc-biocstyle libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-10 groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev
libaec0 libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libblosc-dev libblosc1
libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
libsigsegv2 libsm6 libsnappy1v5 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libsz2 libtcl8.6
libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6
libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config po-debconf
r-base-core r-base-dev r-bioc-biocgenerics r-bioc-rhdf5lib
sbuild-build-depends-r-bioc-rhdf5filters-dummy sensible-utils ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
0 upgraded, 184 newly installed, 0 to remove and 6 not upgraded.
Need to get 89.5 MB of archives.
After this operation, 264 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-WOPlcY/apt_archive ./ sbuild-build-depends-r-bioc-rhdf5filters-dummy 0.invalid.0 [904 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-1 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf openssl armhf 1.1.1l-1 [815 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf unzip armhf 6.0-26 [151 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-2 [80.3 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [353 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.3-3 [27.2 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libcurl4 armhf 7.74.0-1.3 [305 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.68.4-1 [1197 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-4+rpi1 [235 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf libthai-data all 0.1.28-4.1 [171 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-1+b1 [39.7 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf libthai0 armhf 0.1.28-4.1 [51.4 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.48.10+ds1-1 [184 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.48.10+ds1-1 [66.6 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.48.10+ds1-1 [56.8 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.11+dfsg-1 [894 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.7-2 [44.1 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf libtiff5 armhf 4.2.0-1 [268 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.11.1-1 [681 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf r-base-core armhf 4.1.1-2 [25.3 MB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf libgfortran-10-dev armhf 10.3.0-9+rpi1 [276 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf gfortran-10 armhf 10.3.0-9+rpi1 [7201 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf gfortran armhf 4:10.2.1-1+rpi1 [1428 B]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.2+20201114-4 [79.7 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf libncurses-dev armhf 6.2+20201114-4 [288 kB]
Get:102 http://172.17.0.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.2+20201114-4 [940 B]
Get:103 http://172.17.0.1/private bookworm-staging/main armhf libreadline-dev armhf 8.1-2 [121 kB]
Get:104 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.6-4 [240 kB]
Get:105 http://172.17.0.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.0.6-4 [67.8 kB]
Get:106 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.36-2 [197 kB]
Get:107 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.36-2 [187 kB]
Get:108 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-posix2 armhf 10.36-2 [48.7 kB]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.36-2 [626 kB]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:111 http://172.17.0.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:112 http://172.17.0.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:113 http://172.17.0.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:114 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:115 http://172.17.0.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:116 http://172.17.0.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:117 http://172.17.0.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2 [219 kB]
Get:118 http://172.17.0.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:119 http://172.17.0.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:120 http://172.17.0.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:121 http://172.17.0.1/private bookworm-staging/main armhf xauth armhf 1:1.1-1 [36.6 kB]
Get:122 http://172.17.0.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:123 http://172.17.0.1/private bookworm-staging/main armhf r-base-dev all 4.1.1-2 [4488 B]
Get:124 http://172.17.0.1/private bookworm-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:125 http://172.17.0.1/private bookworm-staging/main armhf libswitch-perl all 2.17-2.1 [20.0 kB]
Get:126 http://172.17.0.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:127 http://172.17.0.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:128 http://172.17.0.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:129 http://172.17.0.1/private bookworm-staging/main armhf libio-html-perl all 1.004-2 [16.1 kB]
Get:130 http://172.17.0.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:131 http://172.17.0.1/private bookworm-staging/main armhf liburi-perl all 5.08-1 [90.6 kB]
Get:132 http://172.17.0.1/private bookworm-staging/main armhf libhttp-message-perl all 6.33-1 [80.1 kB]
Get:133 http://172.17.0.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB]
Get:134 http://172.17.0.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:135 http://172.17.0.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:136 http://172.17.0.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:137 http://172.17.0.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:138 http://172.17.0.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:139 http://172.17.0.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:140 http://172.17.0.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:141 http://172.17.0.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:142 http://172.17.0.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get:143 http://172.17.0.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.39-1 [21.9 kB]
Get:144 http://172.17.0.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:145 http://172.17.0.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b4 [14.3 kB]
Get:146 http://172.17.0.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:147 http://172.17.0.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get:148 http://172.17.0.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:149 http://172.17.0.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:150 http://172.17.0.1/private bookworm-staging/main armhf libmro-compat-perl all 0.13-1 [12.2 kB]
Get:151 http://172.17.0.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:152 http://172.17.0.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:153 http://172.17.0.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:154 http://172.17.0.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:155 http://172.17.0.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get:156 http://172.17.0.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get:157 http://172.17.0.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB]
Get:158 http://172.17.0.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get:159 http://172.17.0.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.5 kB]
Get:160 http://172.17.0.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2014-2 [802 kB]
Get:161 http://172.17.0.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB]
Get:162 http://172.17.0.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB]
Get:163 http://172.17.0.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB]
Get:164 http://172.17.0.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:165 http://172.17.0.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.74.0-1.3 [301 kB]
Get:166 http://172.17.0.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-7+b1 [58.9 kB]
Get:167 http://172.17.0.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:168 http://172.17.0.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:169 http://172.17.0.1/private bookworm-staging/main armhf hdf5-helpers armhf 1.10.7+repack-1 [42.7 kB]
Get:170 http://172.17.0.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:171 http://172.17.0.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:172 http://172.17.0.1/private bookworm-staging/main armhf libaec-dev armhf 1.0.6-1 [17.6 kB]
Get:173 http://172.17.0.1/private bookworm-staging/main armhf libsnappy1v5 armhf 1.1.8-1 [16.7 kB]
Get:174 http://172.17.0.1/private bookworm-staging/main armhf libblosc1 armhf 1.20.1+ds1-2 [37.1 kB]
Get:175 http://172.17.0.1/private bookworm-staging/main armhf libblosc-dev armhf 1.20.1+ds1-2 [47.2 kB]
Get:176 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.7+repack-1 [1232 kB]
Get:177 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.7+repack-1 [132 kB]
Get:178 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-fortran-102 armhf 1.10.7+repack-1 [96.7 kB]
Get:179 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.7+repack-1 [81.8 kB]
Get:180 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.7+repack-1 [53.5 kB]
Get:181 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.7+repack-1 [39.8 kB]
Get:182 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-dev armhf 1.10.7+repack-1 [2195 kB]
Get:183 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.38.0-1 [648 kB]
Get:184 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-rhdf5lib armhf 1.14.2+dfsg-2 [30.4 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libexpat1:armhf (2.4.1-2) ...
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No schema files found: doing nothing.
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Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
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Setting up libmagic1:armhf (1:5.39-3) ...
Setting up libdeflate0:armhf (1.7-2) ...
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Setting up zip (3.0-12) ...
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Setting up libblas3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Setting up intltool-debian (0.35.0+20060710.5) ...
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Setting up ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
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Setting up gfortran-10 (10.3.0-9+rpi1) ...
Setting up libdata-optlist-perl (0.112-1) ...
Setting up ucf (3.0043) ...
Setting up autoconf (2.71-2) ...
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Setting up libharfbuzz0b:armhf (2.7.4-1) ...
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Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2+b3) ...
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Setting up libeval-closure-perl (0.14-1) ...
Setting up libhdf5-hl-100:armhf (1.10.7+repack-1) ...
Setting up automake (1:1.16.4-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
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Setting up fontconfig-config (2.13.1-4.2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
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Setting up libwww-curl-perl (4.17-7+b1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:10.2.1-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up dh-autoreconf (20) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.7+repack-1) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up libhdf5-fortran-102:armhf (1.10.7+repack-1) ...
Setting up libdist-checkconflicts-perl (0.11-1.1) ...
Setting up libxt6:armhf (1:1.2.0-1) ...
Setting up xauth (1:1.1-1) ...
Setting up libhdf5-hl-fortran-100:armhf (1.10.7+repack-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up libmodule-implementation-perl (0.09-1.1) ...
Setting up libpackage-stash-perl (0.39-1) ...
Setting up libtk8.6:armhf (8.6.11.1-1) ...
Setting up libpango-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up debhelper (13.5.2) ...
Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ...
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up libhdf5-dev (1.10.7+repack-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libpackage-deprecationmanager-perl (0.17-1.1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-1+b4) ...
Setting up libpangoft2-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libb-hooks-endofscope-perl (0.24-1.1) ...
Setting up libpangocairo-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libmoose-perl (2.2014-2) ...
Setting up r-base-core (4.1.1-2) ...
Creating config file /etc/R/Renviron with new version
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up r-bioc-biocgenerics (0.38.0-1) ...
Setting up r-base-dev (4.1.1-2) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up r-bioc-rhdf5lib (1.14.2+dfsg-2) ...
Setting up dh-r (20210816) ...
Setting up sbuild-build-depends-r-bioc-rhdf5filters-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-9+rpi1 gcc-10_10.3.0-9+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-1 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-9+rpi1 dash_0.5.11+git20210120+802ebd4-1 dctrl-tools_2.24-3 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-9+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-9+rpi1 gcc-10-base_10.3.0-9+rpi1 gcc-11-base_11.2.0-4+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gfortran_4:10.2.1-1+rpi1 gfortran-10_10.3.0-9+rpi1 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hdf5-helpers_1.10.7+repack-1 hostname_3.23 icu-devtools_67.1-7 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libalgorithm-c3-perl_0.11-1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libasan6_11.2.0-4+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-4+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libb-hooks-endofscope-perl_0.24-1.1 libb-hooks-op-check-perl_0.22-1+b4 libbinutils_2.37-5+rpi1 libblas-dev_3.9.0-3 libblas3_3.9.0-3 libblkid1_2.37.2-1 libblosc-dev_1.20.1+ds1-2 libblosc1_1.20.1+ds1-2 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcairo2_1.16.0-5 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-4+rpi1 libclass-c3-perl_0.35-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-1+b4 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl3-gnutls_7.74.0-1.3 libcurl4_7.74.0-1.3 libdata-optlist-perl_0.112-1 libdatrie1_0.2.13-1+b1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdeflate0_1.7-2 libdevel-callchecker-perl_0.008-1+b2 libdevel-globaldestruction-perl_0.14-1.1 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-1 libdist-checkconflicts-perl_0.11-1.1 libdpkg-perl_1.20.9+rpi1 libdynaloader-functions-perl_0.003-1.1 libelf1_0.185-2 libencode-locale-perl_1.05-1.1 libeval-closure-perl_0.14-1 libexpat1_2.4.1-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.12.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.4+dfsg-1 libfribidi0_1.0.8-2 libgcc-10-dev_10.3.0-9+rpi1 libgcc-s1_11.2.0-4+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgfortran-10-dev_10.3.0-9+rpi1 libgfortran5_11.2.0-4+rpi1 libglib2.0-0_2.68.4-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-4+rpi1 libgpg-error0_1.42-3 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-7 libharfbuzz0b_2.7.4-1 libhdf5-103-1_1.10.7+repack-1 libhdf5-cpp-103-1_1.10.7+repack-1 libhdf5-dev_1.10.7+repack-1 libhdf5-fortran-102_1.10.7+repack-1 libhdf5-hl-100_1.10.7+repack-1 libhdf5-hl-cpp-100_1.10.7+repack-1 libhdf5-hl-fortran-100_1.10.7+repack-1 libhogweed6_3.7.3-1 libhttp-date-perl_6.05-1 libhttp-message-perl_6.33-1 libice6_2:1.0.10-1 libicu-dev_67.1-7 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-html-perl_1.004-2 libisl23_0.23-1 libjbig0_2.1-3.1+b2 libjpeg-dev_1:2.0.6-4 libjpeg62-turbo_1:2.0.6-4 libjpeg62-turbo-dev_1:2.0.6-4 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 liblapack-dev_3.9.0-3 liblapack3_3.9.0-3 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblwp-mediatypes-perl_6.04-1 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.3-3 libmodule-implementation-perl_0.09-1.1 libmodule-runtime-conflicts-perl_0.003-1.1 libmodule-runtime-perl_0.016-1 libmoose-perl_2.2014-2 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmro-compat-perl_0.13-1 libnamespace-clean-perl_0.27-1 libncurses-dev_6.2+20201114-4 libncurses5-dev_6.2+20201114-4 libncurses6_6.2+20201114-4 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpackage-deprecationmanager-perl_0.17-1.1 libpackage-stash-perl_0.39-1 libpackage-stash-xs-perl_0.29-1+b2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpango-1.0-0_1.48.10+ds1-1 libpangocairo-1.0-0_1.48.10+ds1-1 libpangoft2-1.0-0_1.48.10+ds1-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libparams-classify-perl_0.015-1+b3 libparams-util-perl_1.102-1+b1 libpcre16-3_2:8.39-13 libpcre2-16-0_10.36-2 libpcre2-32-0_10.36-2 libpcre2-8-0_10.36-2 libpcre2-dev_10.36-2 libpcre2-posix2_10.36-2 libpcre3_2:8.39-13 libpcre3-dev_2:8.39-13 libpcre32-3_2:8.39-13 libpcrecpp0v5_2:8.39-13 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libpixman-1-0_0.40.0-1 libpng-dev_1.6.37-3 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.2 libreadline-dev_8.1-2 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsm6_2:1.2.3-1 libsmartcols1_2.37.2-1 libsnappy1v5_1.1.8-1 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 libsub-exporter-perl_0.988-1 libsub-exporter-progressive-perl_0.001013-1 libsub-identify-perl_0.14-1+b3 libsub-install-perl_0.928-1.1 libsub-name-perl_0.26-1+b1 libsub-override-perl_0.09-2 libswitch-perl_2.17-2.1 libsystemd0_247.9-1+rpi1 libsz2_1.0.6-1 libtasn1-6_4.17.0-2 libtcl8.6_8.6.11+dfsg-1 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libthai-data_0.1.28-4.1 libthai0_0.1.28-4.1 libtiff5_4.2.0-1 libtimedate-perl_2.3300-2 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtk8.6_8.6.11.1-1 libtool_2.4.6-15 libtry-tiny-perl_0.30-1 libubsan1_11.2.0-4+rpi1 libuchardet0_0.0.7-1 libudev1_247.9-1+rpi1 libunistring2_0.9.10-6 liburi-perl_5.08-1 libuuid1_2.37.2-1 libvariable-magic-perl_0.62-1+b3 libwebp6_0.6.1-2.1 libwww-curl-perl_4.17-7+b1 libwww-curl-simple-perl_0.100191-2 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1 libxcb-render0_1.14-3 libxcb-shm0_1.14-3 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.2-2 libxml2_2.9.12+dfsg-5 libxmuu1_2:1.1.2-2+b3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.2.0-1 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-1 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 openssl_1.1.1l-1 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 r-base-core_4.1.1-2 r-base-dev_4.1.1-2 r-bioc-biocgenerics_0.38.0-1 r-bioc-rhdf5lib_1.14.2+dfsg-2 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-rhdf5filters-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021a-1 ucf_3.0043 unzip_6.0-26 util-linux_2.37.2-1 x11-common_1:7.7+23 xauth_1:1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2 zip_3.0-12 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig._7jq6jvn/trustedkeys.kbx': General error
gpgv: Signature made Tue Sep 28 05:41:24 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-rhdf5filters_1.4.0+dfsg-3.dsc
dpkg-source: info: extracting r-bioc-rhdf5filters in /<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg
dpkg-source: info: unpacking r-bioc-rhdf5filters_1.4.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-rhdf5filters_1.4.0+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libs.patch
dpkg-source: info: applying hardening
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-083b2ea3-08e4-400b-bf89-48b2f0857e20
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-rhdf5filters
dpkg-buildpackage: info: source version 1.4.0+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
install -d /<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0\+dfsg/debian/.debhelper/generated/_source/home
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/r-bioc-rhdf5filters.substvars debian/files
rm -fr -- debian/r-bioc-rhdf5filters/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p
" > debian/autoreconf.before
grep -q ^XDT_ configure.ac
autoreconf -f -i
find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p
" > debian/autoreconf.after
dh_auto_configure -a -O--buildsystem=R
install -d /<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0\+dfsg/debian/.debhelper/generated/_source/home
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
rm -fr -- /tmp/dh-xdg-rundir-U9Z9EQ4J
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
rm -f -- debian/r-bioc-rhdf5filters.substvars
rm -fr -- debian/.debhelper/generated/r-bioc-rhdf5filters/ debian/r-bioc-rhdf5filters/ debian/tmp/
dh_auto_install --destdir=debian/r-bioc-rhdf5filters/ -a -O--buildsystem=R
install -d /<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0\+dfsg/debian/r-bioc-rhdf5filters
I: R Package: rhdf5filters Version: 1.4.0
I: Building using R version 4.1.1-2
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Tue, 28 Sep 2021 10:58:01 +0530
mkdir -p /<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0\+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library
I: Using extra install flags: --configure-args="ax_cv_gcc_check_x86_cpu_init=yes ax_cv_gcc_x86_cpu_supports_sse2=no"
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0\+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library --clean "--configure-args=\"ax_cv_gcc_check_x86_cpu_init=yes ax_cv_gcc_x86_cpu_supports_sse2=no\"" . "--built-timestamp='Tue, 28 Sep 2021 10:58:01 +0530'"
* installing *source* package 'rhdf5filters' ...
** using staged installation
configuring the BLOSC filter...
x86_CPU=false
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to enable C11 features... -std=gnu11
checking whether C compiler accepts -msse2... no
checking whether C compiler accepts -mavx2... no
configure: creating ./config.status
config.status: creating src/blosc/Makefile
configure: BZIP2_LIB=bzip2/libH5Zbz2.so
configure: BLOSC_LIB=blosc/libH5Zblosc.so
configure: LZF_LIB=lzf/libH5Zlzf.so
configure: creating ./config.status
config.status: creating src/blosc/Makefile
config.status: creating src/Makevars
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg/src'
make -C blosc
make[2]: Entering directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg/src/blosc'
gcc -std=gnu99 -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -c -o H5Zblosc.o H5Zblosc.c \
-I/usr/include/hdf5/serial
g++ -std=gnu++14 -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -Wl,-z,relro -shared -o libH5Zblosc.so H5Zblosc.o \
-lblosc -lz
make[2]: Leaving directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg/src/blosc'
make -C bzip2
make[2]: Entering directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg/src/bzip2'
gcc -std=gnu99 -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -shared H5Zbzip2.c -I/usr/include/hdf5/serial \
-lbz2 -Wl,-z,relro -o libH5Zbz2.so -Wl,-z,relro
make[2]: Leaving directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg/src/bzip2'
make -C lzf
make[2]: Entering directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg/src/lzf'
make -C lzf
make[3]: Entering directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg/src/lzf/lzf'
gcc -std=gnu99 -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -c lzf_c.c
gcc -std=gnu99 -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -c lzf_d.c
rm -f liblzf.a
ar cq liblzf.a lzf_c.o lzf_d.o
make[3]: Leaving directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg/src/lzf/lzf'
gcc -std=gnu99 -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -shared H5Zlzf.c -I/usr/include/hdf5/serial \
-I./lzf/ ./lzf/liblzf.a -Wl,-z,relro -o libH5Zlzf.so
make[2]: Leaving directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg/src/lzf'
mkdir -p "/<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5filters-1.4.0+dfsg/00new/rhdf5filters/lib/"
cp bzip2/libH5Zbz2.so "/<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5filters-1.4.0+dfsg/00new/rhdf5filters/lib/"
cp blosc/libH5Zblosc.so "/<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5filters-1.4.0+dfsg/00new/rhdf5filters/lib/"
cp lzf/libH5Zlzf.so "/<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5filters-1.4.0+dfsg/00new/rhdf5filters/lib/"
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I'/usr/lib/R/site-library/Rhdf5lib/include' -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rhdf5filters.c -o rhdf5filters.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o rhdf5filters.so rhdf5filters.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5filters-1.4.0+dfsg/00new/rhdf5filters/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rhdf5filters)
rm -f /<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0\+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/LICENSE
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 303.
I: Using r-bioc-biocstyle for Suggests:BiocStyle
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-testthat for Suggests:testthat (>= 2.1.0)
I: Using r-bioc-rhdf5 for Suggests:rhdf5 (>= 2.34.0)
I: Using r-bioc-rhdf5lib for LinkingTo:Rhdf5lib
I: BioConductor API version: r-api-bioc-3.13
I: Use r-bioc-rhdf5filters as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
install -d debian/r-bioc-rhdf5filters/usr/share/doc/r-bioc-rhdf5filters
install -d debian/.debhelper/generated/r-bioc-rhdf5filters
install -p -m0644 debian/copyright debian/r-bioc-rhdf5filters/usr/share/doc/r-bioc-rhdf5filters/copyright
dh_installchangelogs -a -O--buildsystem=R
install -p -m0644 debian/changelog debian/r-bioc-rhdf5filters/usr/share/doc/r-bioc-rhdf5filters/changelog.Debian
dh_installsystemduser -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
install -d debian/r-bioc-rhdf5filters/usr/share/lintian/overrides
install -p -m0644 debian/r-bioc-rhdf5filters.lintian-overrides debian/r-bioc-rhdf5filters/usr/share/lintian/overrides/r-bioc-rhdf5filters
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
cd debian/r-bioc-rhdf5filters
chmod a-x usr/share/doc/r-bioc-rhdf5filters/changelog.Debian
gzip -9nf usr/share/doc/r-bioc-rhdf5filters/changelog.Debian
cd '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.4.0+dfsg'
dh_fixperms -a -O--buildsystem=R
find debian/r-bioc-rhdf5filters ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/r-bioc-rhdf5filters/usr/share/doc -type f -a -true -a ! -regex 'debian/r-bioc-rhdf5filters/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/r-bioc-rhdf5filters/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/r-bioc-rhdf5filters/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/r-bioc-rhdf5filters -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/r-bioc-rhdf5filters/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
install -d debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/arm-linux-gnueabihf
dwz -mdebian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/arm-linux-gnueabihf/r-bioc-rhdf5filters.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/r-bioc-rhdf5filters.debug -- debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so
objcopy --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/arm-linux-gnueabihf/r-bioc-rhdf5filters.debug
dh_strip -a -O--buildsystem=R
install -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/76
objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/76/989a4e8e00ff8018fe8a372fd7b3e8c4637cf5.debug
chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/76/989a4e8e00ff8018fe8a372fd7b3e8c4637cf5.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so
objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/76/989a4e8e00ff8018fe8a372fd7b3e8c4637cf5.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so
install -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/4d
objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/4d/e1f079c624cfb7389e3b24b78f3029dc032dc6.debug
chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/4d/e1f079c624cfb7389e3b24b78f3029dc032dc6.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so
objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/4d/e1f079c624cfb7389e3b24b78f3029dc032dc6.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so
install -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/10
objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/10/74c24ac919f8e5136ceedb192a860ec0bb4d50.debug
chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/10/74c24ac919f8e5136ceedb192a860ec0bb4d50.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so
objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/10/74c24ac919f8e5136ceedb192a860ec0bb4d50.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so
install -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/ef
objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/ef/9bd76a383835617bbf1c76576bf696015e56d9.debug
chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/ef/9bd76a383835617bbf1c76576bf696015e56d9.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so
objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/ef/9bd76a383835617bbf1c76576bf696015e56d9.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so
install -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.dwz
cp --reflink=auto -a debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.dwz
rm -fr debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz
rmdir -p --ignore-fail-on-non-empty debian/r-bioc-rhdf5filters/usr/lib/debug
install -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/share/doc
ln -s r-bioc-rhdf5filters debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/share/doc/r-bioc-rhdf5filters-dbgsym
dh_makeshlibs -a -O--buildsystem=R
rm -f debian/r-bioc-rhdf5filters/DEBIAN/shlibs
dh_shlibdeps -a -O--buildsystem=R
install -d debian/r-bioc-rhdf5filters/DEBIAN
dpkg-shlibdeps -Tdebian/r-bioc-rhdf5filters.substvars debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
echo misc:Depends= >> debian/r-bioc-rhdf5filters.substvars
echo misc:Pre-Depends= >> debian/r-bioc-rhdf5filters.substvars
install -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/DEBIAN
dpkg-gencontrol -pr-bioc-rhdf5filters -ldebian/changelog -Tdebian/r-bioc-rhdf5filters.substvars -Pdebian/.debhelper/r-bioc-rhdf5filters/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=r-bioc-rhdf5filters-dbgsym "-DDepends=r-bioc-rhdf5filters (= \${binary:Version})" "-DDescription=debug symbols for r-bioc-rhdf5filters" "-DBuild-Ids=1074c24ac919f8e5136ceedb192a860ec0bb4d50 4de1f079c624cfb7389e3b24b78f3029dc032dc6 76989a4e8e00ff8018fe8a372fd7b3e8c4637cf5 ef9bd76a383835617bbf1c76576bf696015e56d9" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/DEBIAN/control
dpkg-gencontrol -pr-bioc-rhdf5filters -ldebian/changelog -Tdebian/r-bioc-rhdf5filters.substvars -Pdebian/r-bioc-rhdf5filters
chmod 0644 -- debian/r-bioc-rhdf5filters/DEBIAN/control
dh_md5sums -a -O--buildsystem=R
cd debian/r-bioc-rhdf5filters >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/r-bioc-rhdf5filters/DEBIAN/md5sums
cd debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a -O--buildsystem=R
dpkg-deb --root-owner-group --build debian/r-bioc-rhdf5filters ..
dpkg-deb --root-owner-group --build debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root ..
dpkg-deb: building package 'r-bioc-rhdf5filters-dbgsym' in '../r-bioc-rhdf5filters-dbgsym_1.4.0+dfsg-3_armhf.deb'.
dpkg-deb: building package 'r-bioc-rhdf5filters' in '../r-bioc-rhdf5filters_1.4.0+dfsg-3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-bioc-rhdf5filters_1.4.0+dfsg-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-09-29T13:28:03Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-rhdf5filters_1.4.0+dfsg-3_armhf.changes:
-----------------------------------------------
Format: 1.8
Date: Tue, 28 Sep 2021 10:58:01 +0530
Source: r-bioc-rhdf5filters
Binary: r-bioc-rhdf5filters r-bioc-rhdf5filters-dbgsym
Architecture: armhf
Version: 1.4.0+dfsg-3
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
r-bioc-rhdf5filters - GNU R HDF5 compression filters
Closes: 995208
Changes:
r-bioc-rhdf5filters (1.4.0+dfsg-3) unstable; urgency=medium
.
* Team Upload.
* d/t/autopkgtest-pkg-r.conf: Fix the name of
test-depends, r-cran-rhdf5 => r-bioc-rhdf5 (Closes: #995208)
Checksums-Sha1:
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620a40d3de032495dc63d705252ae13dcec83cff 10105 r-bioc-rhdf5filters_1.4.0+dfsg-3_armhf.buildinfo
9a4d4ee1b836ed85730ddb27d320525eda200d9a 24184 r-bioc-rhdf5filters_1.4.0+dfsg-3_armhf.deb
Checksums-Sha256:
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40be09e52eb3cf810404f824ef6813ef08874ea58e2f61ae8c2e48543d61f630 10105 r-bioc-rhdf5filters_1.4.0+dfsg-3_armhf.buildinfo
81eacb38f8fc5ad8eb0ac928484c32da513b19fd581b3e8022e35efd31b83ea7 24184 r-bioc-rhdf5filters_1.4.0+dfsg-3_armhf.deb
Files:
5d136d40c6b82677e4c6317a203343d8 16924 debug optional r-bioc-rhdf5filters-dbgsym_1.4.0+dfsg-3_armhf.deb
e217b837fa33a96fe7ca743c3e6a669e 10105 gnu-r optional r-bioc-rhdf5filters_1.4.0+dfsg-3_armhf.buildinfo
fc4281e3ecf50c533aa289731712e7ea 24184 gnu-r optional r-bioc-rhdf5filters_1.4.0+dfsg-3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-rhdf5filters-dbgsym_1.4.0+dfsg-3_armhf.deb
-------------------------------------------------
new Debian package, version 2.0.
size 16924 bytes: control archive=760 bytes.
544 bytes, 12 lines control
523 bytes, 5 lines md5sums
Package: r-bioc-rhdf5filters-dbgsym
Source: r-bioc-rhdf5filters
Version: 1.4.0+dfsg-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 48
Depends: r-bioc-rhdf5filters (= 1.4.0+dfsg-3)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-rhdf5filters
Build-Ids: 1074c24ac919f8e5136ceedb192a860ec0bb4d50 4de1f079c624cfb7389e3b24b78f3029dc032dc6 76989a4e8e00ff8018fe8a372fd7b3e8c4637cf5 ef9bd76a383835617bbf1c76576bf696015e56d9
drwxr-xr-x root/root 0 2021-09-28 05:28 ./
drwxr-xr-x root/root 0 2021-09-28 05:28 ./usr/
drwxr-xr-x root/root 0 2021-09-28 05:28 ./usr/lib/
drwxr-xr-x root/root 0 2021-09-28 05:28 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-09-28 05:28 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-09-28 05:28 ./usr/lib/debug/.build-id/10/
-rw-r--r-- root/root 7628 2021-09-28 05:28 ./usr/lib/debug/.build-id/10/74c24ac919f8e5136ceedb192a860ec0bb4d50.debug
drwxr-xr-x root/root 0 2021-09-28 05:28 ./usr/lib/debug/.build-id/4d/
-rw-r--r-- root/root 7208 2021-09-28 05:28 ./usr/lib/debug/.build-id/4d/e1f079c624cfb7389e3b24b78f3029dc032dc6.debug
drwxr-xr-x root/root 0 2021-09-28 05:28 ./usr/lib/debug/.build-id/76/
-rw-r--r-- root/root 4860 2021-09-28 05:28 ./usr/lib/debug/.build-id/76/989a4e8e00ff8018fe8a372fd7b3e8c4637cf5.debug
drwxr-xr-x root/root 0 2021-09-28 05:28 ./usr/lib/debug/.build-id/ef/
-rw-r--r-- root/root 8756 2021-09-28 05:28 ./usr/lib/debug/.build-id/ef/9bd76a383835617bbf1c76576bf696015e56d9.debug
drwxr-xr-x root/root 0 2021-09-28 05:28 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2021-09-28 05:28 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 2376 2021-09-28 05:28 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/r-bioc-rhdf5filters.debug
drwxr-xr-x root/root 0 2021-09-28 05:28 ./usr/share/
drwxr-xr-x root/root 0 2021-09-28 05:28 ./usr/share/doc/
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r-bioc-rhdf5filters_1.4.0+dfsg-3_armhf.deb
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new Debian package, version 2.0.
size 24184 bytes: control archive=1936 bytes.
1351 bytes, 24 lines control
2754 bytes, 32 lines md5sums
Package: r-bioc-rhdf5filters
Version: 1.4.0+dfsg-3
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 98
Depends: r-base-core (>= 4.1.1-2), r-api-4.0, r-api-bioc-3.13, r-bioc-rhdf5lib, libblosc1 (>= 1.20.1+ds1), libbz2-1.0, libc6 (>= 2.4)
Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-cran-testthat (>= 2.1.0), r-bioc-rhdf5 (>= 2.34.0)
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/rhdf5filters/
Description: GNU R HDF5 compression filters
This Bioconductor package provides a collection of compression filters for
use with HDF5 datasets.
.
One of the advantages of using HDF5 is that data stored on disk can be
compressed, reducing both the space required to store them and the time
needed to read those data. This data compression is applied as part of the
HDF5 “filter pipeline” that modifies data during I/O operations. HDF5
includes several filter algorithms as standard, and the version of the
HDF5 library found in Rhdf5lib is additionally compiled with support for
the deflate and szip compression filters which rely on third-party
compression libraries. Collectively HDF5 refer to these as the “internal”
filters. It is possible to use any combination of these (including none)
when writing data using rhdf5.
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Build Architecture: armhf
Build-Space: 1544
Build-Time: 77
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 962
Job: r-bioc-rhdf5filters_1.4.0+dfsg-3
Machine Architecture: armhf
Package: r-bioc-rhdf5filters
Package-Time: 1125
Source-Version: 1.4.0+dfsg-3
Space: 1544
Status: successful
Version: 1.4.0+dfsg-3
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Finished at 2021-09-29T13:28:03Z
Build needed 00:18:45, 1544k disc space