r-bioc-rhdf5filters →
1.12.1+dfsg-2 →
armhf → 2023-09-29 18:11:43
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| r-bioc-rhdf5filters 1.12.1+dfsg-2 (armhf) Fri, 29 Sep 2023 17:49:27 +0000 |
+==============================================================================+
Package: r-bioc-rhdf5filters
Version: 1.12.1+dfsg-2
Source Version: 1.12.1+dfsg-2
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-5ebb9f7f-135b-4323-934c-b1a2f84d23f5' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.1 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.7 MB]
Fetched 28.8 MB in 29s (987 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-rhdf5filters' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5filters.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5filters.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 227 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-bioc-rhdf5filters 1.12.1+dfsg-2 (dsc) [1633 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-bioc-rhdf5filters 1.12.1+dfsg-2 (tar) [220 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-bioc-rhdf5filters 1.12.1+dfsg-2 (diff) [5580 B]
Fetched 227 kB in 0s (1984 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-rhdf5filters-XbyIlv/r-bioc-rhdf5filters-1.12.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-rhdf5filters-XbyIlv' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-3U0dYY/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-3U0dYY/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-3U0dYY/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3U0dYY/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3U0dYY/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3U0dYY/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-3U0dYY/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3U0dYY/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2758 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 19 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3U0dYY/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.8 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11775 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-rhdf5lib, libbz2-dev, libblosc-dev, libhdf5-dev, libzstd-dev, libsnappy-dev
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-rhdf5lib, libbz2-dev, libblosc-dev, libhdf5-dev, libzstd-dev, libsnappy-dev
dpkg-deb: building package 'sbuild-build-depends-r-bioc-rhdf5filters-dummy' in '/<<BUILDDIR>>/resolver-3U0dYY/apt_archive/sbuild-build-depends-r-bioc-rhdf5filters-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-rhdf5filters-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3U0dYY/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3U0dYY/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3U0dYY/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-3U0dYY/apt_archive ./ Sources [547 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3U0dYY/apt_archive ./ Packages [630 B]
Fetched 2510 B in 1s (3532 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-rhdf5filters build dependencies (apt-based resolver)
-------------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-12 groff-base hdf5-helpers icu-devtools
intltool-debian libaec-dev libaec0 libalgorithm-c3-perl libarchive-zip-perl
libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
libblosc-dev libblosc1 libbrotli1 libbsd0 libbz2-dev libcairo2
libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl
libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-12-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14
libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libsnappy-dev libsnappy1v5
libssh2-1 libssl-dev libssl3 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libsz2 libtcl8.6
libthai-data libthai0 libtiff6 libtimedate-perl libtk8.6 libtool
libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7
libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 libzstd-dev m4 man-db openssl pkg-config
pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-biocgenerics
r-bioc-rhdf5lib ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-12-doc libcoarrays-dev groff liblapack-doc
libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev
low-memory-monitor libhdf5-doc icu-doc liblzma-doc ncurses-doc
libscalar-number-perl readline-doc libssl-doc tcl8.6 tk8.6 libtool-doc
gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl
libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl
elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base
texlive-latex-base texlive-plain-generic texlive-fonts-recommended
texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
texlive-latex-extra texinfo r-bioc-biobase r-bioc-s4vectors r-bioc-iranges
r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools
r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit
r-bioc-biocstyle r-cran-knitr r-cran-rmarkdown r-cran-tinytest
r-cran-mockery
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libio-compress-brotli-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-12 groff-base hdf5-helpers icu-devtools
intltool-debian libaec-dev libaec0 libalgorithm-c3-perl libarchive-zip-perl
libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
libblosc-dev libblosc1 libbrotli1 libbsd0 libbz2-dev libcairo2
libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl
libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-12-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14
libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libsnappy-dev libsnappy1v5
libssh2-1 libssl-dev libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libsz2 libtcl8.6 libthai-data libthai0
libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0
liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 libzstd-dev m4 man-db openssl pkg-config pkgconf pkgconf-bin
po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-rhdf5lib
sbuild-build-depends-r-bioc-rhdf5filters-dummy ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
The following packages will be upgraded:
libssl3
1 upgraded, 187 newly installed, 0 to remove and 18 not upgraded.
Need to get 98.4 MB of archives.
After this operation, 295 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3U0dYY/apt_archive ./ sbuild-build-depends-r-bioc-rhdf5filters-dummy 0.invalid.0 [916 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf libssl3 armhf 3.0.11-1 [1620 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-2 [1033 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-1 [80.5 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.11.2-3 [1342 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.0.11-1 [1367 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-13 [156 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.6 [81.9 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-13 [1201 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.6 [952 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf zip armhf 3.0-13 [207 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf unzip armhf 6.0-28 [147 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libpaper1 armhf 1.1.29 [11.9 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libpaper-utils armhf 1.1.29 [8416 B]
Get:40 http://172.17.4.1/private trixie-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-1 [258 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.6-1 [323 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.6-1 [726 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.56.0-1 [60.5 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-2 [195 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 7.88.1-10+rpi1 [343 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.0-2+rpi1 [1249 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 12.2.0-14+rpi1 [238 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-2 [187 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-2 [40.4 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-2 [30.0 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-3 [133 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-1 [298 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.1-4 [26.3 MB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libgfortran-12-dev armhf 12.2.0-14+rpi1 [285 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf gfortran-12 armhf 12.2.0-14+rpi1 [7509 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:12.2.0-3+rpi1 [1424 B]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20230625-2 [79.6 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20230625-2 [290 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-1.3 [123 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.40-1 [336 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.4-0.1 [269 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-3 [175 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-3 [9959 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.1-4 [4512 B]
Get:123 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.44-2 [81.8 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:147 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:148 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2206-1 [795 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1 [12.0 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 7.88.1-10+rpi1 [337 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10 [55.8 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20230912 [40.8 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf hdf5-helpers armhf 1.10.10+repack-2 [23.2 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:172 http://172.17.4.1/private trixie-staging/main armhf libaec-dev armhf 1.0.6-1 [17.6 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf libsnappy1v5 armhf 1.1.10-1 [24.8 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf libblosc1 armhf 1.21.5+ds-1 [36.9 kB]
Get:175 http://172.17.4.1/private trixie-staging/main armhf libblosc-dev armhf 1.21.5+ds-1 [46.8 kB]
Get:176 http://172.17.4.1/private trixie-staging/main armhf libcurl4-openssl-dev armhf 7.88.1-10+rpi1 [423 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf libhdf5-103-1 armhf 1.10.10+repack-2 [1213 kB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.10+repack-2 [111 kB]
Get:179 http://172.17.4.1/private trixie-staging/main armhf libhdf5-fortran-102 armhf 1.10.10+repack-2 [77.2 kB]
Get:180 http://172.17.4.1/private trixie-staging/main armhf libhdf5-hl-100 armhf 1.10.10+repack-2 [59.8 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.10+repack-2 [34.0 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.10+repack-2 [20.5 kB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf libssl-dev armhf 3.0.11-1 [2105 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf libhdf5-dev armhf 1.10.10+repack-2 [2313 kB]
Get:185 http://172.17.4.1/private trixie-staging/main armhf libsnappy-dev armhf 1.1.10-1 [38.5 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf libzstd-dev armhf 1.5.5+dfsg2-1 [301 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocgenerics all 0.46.0-1 [594 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rhdf5lib armhf 1.22.1+dfsg-1 [102 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking gettext-base (0.21-13) ...
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Unpacking m4 (1.4.19-4) ...
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Unpacking autoconf (2.71-3) ...
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Unpacking autotools-dev (20220109.1) ...
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Unpacking automake (1:1.16.5-1.3) ...
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Unpacking autopoint (0.21-13) ...
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Unpacking dctrl-tools (2.24-3) ...
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Unpacking libdebhelper-perl (13.11.6) ...
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Setting up libexpat1:armhf (2.5.0-2) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up libpixman-1-0:armhf (0.42.2-1) ...
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Setting up libfile-which-perl (1.27-2) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.2-1+b1) ...
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Setting up liblerc4:armhf (4.0.0+ds-3) ...
Setting up libzstd-dev:armhf (1.5.5+dfsg2-1) ...
Setting up bsdextrautils (2.39.2-1) ...
Setting up hdf5-helpers (1.10.10+repack-2) ...
Setting up libdynaloader-functions-perl (0.003-3) ...
Setting up libdatrie1:armhf (0.2.13-2+b2) ...
Setting up libmagic-mgc (1:5.45-2) ...
Setting up libclone-perl:armhf (0.46-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-3) ...
Setting up libglib2.0-0:armhf (2.78.0-2+rpi1) ...
No schema files found: doing nothing.
Setting up unzip (6.0-28) ...
Setting up libdebhelper-perl (13.11.6) ...
Setting up libbrotli1:armhf (1.0.9-2+b3) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libtry-tiny-perl (0.31-2) ...
Setting up libnghttp2-14:armhf (1.56.0-1) ...
Setting up libmagic1:armhf (1:5.45-2) ...
Setting up libdeflate0:armhf (1.18-1) ...
Setting up gettext-base (0.21-13) ...
Setting up m4 (1.4.19-4) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up file (1:5.45-2) ...
Setting up libjbig0:armhf (2.1-6.1) ...
Setting up libpcre2-16-0:armhf (10.42-4) ...
Setting up libaec0:armhf (1.0.6-1) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up libsnappy1v5:armhf (1.1.10-1) ...
Setting up zip (3.0-13) ...
Setting up libpackage-stash-xs-perl:armhf (0.30-1+b1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpcre2-32-0:armhf (10.42-4) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpkgconf3:armhf (1.8.1-1) ...
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Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ...
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Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
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Setting up libssl-dev:armhf (3.0.11-1) ...
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Setting up ucf (3.0043+nmu1) ...
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Setting up libgfortran5:armhf (12.2.0-14+rpi1) ...
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Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libblosc1:armhf (1.21.5+ds-1) ...
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Setting up libssh2-1:armhf (1.11.0-2) ...
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Setting up openssl (3.0.11-1) ...
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Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up libsz2:armhf (1.0.6-1) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libpaper1:armhf (1.1.29) ...
Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-2) ...
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Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.4+20230625-2) ...
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Setting up gettext (0.21-13) ...
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Setting up libtool (2.4.7-7) ...
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Setting up fontconfig-config (2.14.2-6) ...
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Setting up libpng-dev:armhf (1.6.40-1) ...
Setting up libaec-dev:armhf (1.0.6-1) ...
Setting up libjpeg-dev:armhf (1:2.1.5-2) ...
Setting up libcurl3-gnutls:armhf (7.88.1-10+rpi1) ...
Setting up libgfortran-12-dev:armhf (12.2.0-14+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libpaper-utils (1.1.29) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:armhf (8.2-1.3) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up gfortran-12 (12.2.0-14+rpi1) ...
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.114-1) ...
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-2) ...
Setting up libcurl4:armhf (7.88.1-10+rpi1) ...
Setting up libx11-6:armhf (2:1.8.6-1) ...
Setting up libharfbuzz0b:armhf (8.0.1-1) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (6.44-2) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-10) ...
Setting up man-db (2.11.2-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:12.2.0-3+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libcurl4-openssl-dev:armhf (7.88.1-10+rpi1) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1.1) ...
Setting up libhdf5-103-1:armhf (1.10.10+repack-2) ...
Setting up xauth (1:1.1.2-1) ...
Setting up libhdf5-cpp-103-1:armhf (1.10.10+repack-2) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libhdf5-hl-100:armhf (1.10.10+repack-2) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up debhelper (13.11.6) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.10+repack-2) ...
Setting up libhdf5-fortran-102:armhf (1.10.10+repack-2) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up libhdf5-hl-fortran-100:armhf (1.10.10+repack-2) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up libmoose-perl:armhf (2.2206-1) ...
Setting up libhdf5-dev (1.10.10+repack-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Processing triggers for libc-bin (2.36-9+rpi1+deb12u1) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up fontconfig (2.14.2-6) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Setting up libpango-1.0-0:armhf (1.51.0+ds-2) ...
Setting up libcairo2:armhf (1.18.0-1) ...
Setting up libpangoft2-1.0-0:armhf (1.51.0+ds-2) ...
Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-2) ...
Setting up r-base-core (4.3.1-4) ...
Creating config file /etc/R/Renviron with new version
Setting up r-bioc-biocgenerics (0.46.0-1) ...
Setting up r-base-dev (4.3.1-4) ...
Setting up r-bioc-rhdf5lib (1.22.1+dfsg-1) ...
Setting up dh-r (20230912) ...
Setting up sbuild-build-depends-r-bioc-rhdf5filters-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.36-9+rpi1+deb12u1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.40-2+rpi2 dpkg-dev_1.21.22+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-9+rpi1+deb12u1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.1.38-1+rpi1
Package versions: adduser_3.137 apt_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2+rpi2 binutils-arm-linux-gnueabihf_2.40-2+rpi2 binutils-common_2.40-2+rpi2 bsdextrautils_2.39.2-1 bsdutils_1:2.39.2-1 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20230311 coreutils_9.1-1 cpp_4:12.2.0-3+rpi1 cpp-12_12.2.0-14+rpi1 dash_0.5.12-6 dctrl-tools_2.24-3 debconf_1.5.82 debhelper_13.11.6 debianutils_5.13 dh-autoreconf_20 dh-r_20230912 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1.1 dpkg_1.21.22+rpi1 dpkg-dev_1.21.22+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-4 fontconfig_2.14.2-6 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:12.2.0-3+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-3+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-13 gettext-base_0.21-13 gfortran_4:12.2.0-3+rpi1 gfortran-12_12.2.0-14+rpi1 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.8-5 groff-base_1.23.0-2 gzip_1.12-1 hdf5-helpers_1.10.10+repack-2 hostname_3.23+nmu1 icu-devtools_72.1-3 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-3 libacl1_2.3.1-3 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.7.3 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.6-1 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.40-2+rpi2 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.2-1 libblosc-dev_1.21.5+ds-1 libblosc1_1.21.5+ds-1 libbrotli1_1.0.9-2+b3 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.36-9+rpi1+deb12u1 libc-dev-bin_2.36-9+rpi1+deb12u1 libc6_2.36-9+rpi1+deb12u1 libc6-dev_2.36-9+rpi1+deb12u1 libcairo2_1.18.0-1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcc1-0_12.2.0-14+rpi1 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2+b1 libclone-perl_0.46-1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.40-2+rpi2 libctf0_2.40-2+rpi2 libcurl3-gnutls_7.88.1-10+rpi1 libcurl4_7.88.1-10+rpi1 libcurl4-openssl-dev_7.88.1-10+rpi1 libdata-optlist-perl_0.114-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270 libdebhelper-perl_13.11.6 libdeflate0_1.18-1 libdevel-callchecker-perl_0.008-2 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-2 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.21.22+rpi1 libdynaloader-functions-perl_0.003-3 libelf1_0.188-2.1+rpi1 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 libexpat1_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.1-1 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libfontconfig1_2.14.2-6 libfreetype6_2.13.2+dfsg-1 libfribidi0_1.0.13-3 libgcc-12-dev_12.2.0-14+rpi1 libgcc-s1_12.2.0-14+rpi1 libgcrypt20_1.10.2-2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran-12-dev_12.2.0-14+rpi1 libgfortran5_12.2.0-14+rpi1 libglib2.0-0_2.78.0-2+rpi1 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.1-4 libgomp1_12.2.0-14+rpi1 libgpg-error0_1.47-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20.1-3 libharfbuzz0b_8.0.1-1 libhdf5-103-1_1.10.10+repack-2 libhdf5-cpp-103-1_1.10.10+repack-2 libhdf5-dev_1.10.10+repack-2 libhdf5-fortran-102_1.10.10+repack-2 libhdf5-hl-100_1.10.10+repack-2 libhdf5-hl-cpp-100_1.10.10+repack-2 libhdf5-hl-fortran-100_1.10.10+repack-2 libhogweed6_3.9.1-2 libhttp-date-perl_6.05-2 libhttp-message-perl_6.44-2 libice6_2:1.0.10-1 libicu-dev_72.1-3 libicu72_72.1-3 libidn2-0_2.3.4-1 libio-html-perl_1.004-3 libisl23_0.26-3 libjansson4_2.14-2 libjbig0_2.1-6.1 libjpeg-dev_1:2.1.5-2 libjpeg62-turbo_1:2.1.5-2 libjpeg62-turbo-dev_1:2.1.5-2 libk5crypto3_1.20.1-3 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-3 libkrb5support0_1.20.1-3 libksba8_1.6.3-2 liblapack-dev_3.11.0-2 liblapack3_3.11.0-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblerc4_4.0.0+ds-3 liblwp-mediatypes-perl_6.04-2 liblz4-1_1.9.4-1+rpi1+b1 liblzma-dev_5.4.4-0.1 liblzma5_5.4.4-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmodule-implementation-perl_0.09-2 libmodule-runtime-conflicts-perl_0.003-2 libmodule-runtime-perl_0.016-2 libmoose-perl_2.2206-1 libmount1_2.39.2-1 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libmro-compat-perl_0.15-2 libnamespace-clean-perl_0.27-2 libncurses-dev_6.4+20230625-2 libncurses6_6.4+20230625-2 libncursesw6_6.4+20230625-2 libnettle8_3.9.1-2 libnghttp2-14_1.56.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.0-4 libpackage-deprecationmanager-perl_0.18-1 libpackage-stash-perl_0.40-1 libpackage-stash-xs-perl_0.30-1+b1 libpam-cap_1:2.66-4 libpam-modules_1.5.2-7 libpam-modules-bin_1.5.2-7 libpam-runtime_1.5.2-7 libpam0g_1.5.2-7 libpango-1.0-0_1.51.0+ds-2 libpangocairo-1.0-0_1.51.0+ds-2 libpangoft2-1.0-0_1.51.0+ds-2 libpaper-utils_1.1.29 libpaper1_1.1.29 libparams-classify-perl_0.015-2+b1 libparams-util-perl_1.102-2+b1 libpcre2-16-0_10.42-4 libpcre2-32-0_10.42-4 libpcre2-8-0_10.42-4 libpcre2-dev_10.42-4 libpcre2-posix3_10.42-4 libpcre3_2:8.39-15 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpkgconf3_1.8.1-1 libpng-dev_1.6.40-1 libpng16-16_1.6.40-1 libpsl5_0.21.2-1+b1 libreadline-dev_8.2-1.3 libreadline8_8.2-1.3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg1-3 libsasl2-modules-db_2.1.28+dfsg1-3 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.4-1+b2 libsepol1_3.1-1 libsepol2_3.5-1 libsharpyuv0_1.3.2-0.3 libsm6_2:1.2.3-1 libsmartcols1_2.39.2-1 libsnappy-dev_1.1.10-1 libsnappy1v5_1.1.10-1 libsqlite3-0_3.43.1-1 libss2_1.47.0-2 libssh2-1_1.11.0-2 libssl-dev_3.0.11-1 libssl1.1_1.1.1o-1 libssl3_3.0.11-1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3 libsub-install-perl_0.929-1 libsub-name-perl_0.27-1 libsub-override-perl_0.09-4 libswitch-perl_2.17-3 libsystemd0_252.12-1~deb12u1+rpi1 libsz2_1.0.6-1 libtasn1-6_4.19.0-3 libtcl8.6_8.6.13+dfsg-2 libtext-glob-perl_0.11-3 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff6_4.5.1+git230720-1 libtimedate-perl_2.3300-2 libtinfo6_6.4+20230625-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.13-2 libtool_2.4.7-7 libtry-tiny-perl_0.31-2 libubsan1_12.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_252.12-1~deb12u1+rpi1 libunistring2_1.0-2 libunistring5_1.1-2 liburi-perl_5.21-1 libuuid1_2.39.2-1 libvariable-magic-perl_0.63-1+b1 libwebp7_1.3.2-0.3 libwww-curl-perl_4.17-10 libwww-curl-simple-perl_0.100191-3 libx11-6_2:1.8.6-1 libx11-data_2:1.8.6-1 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.3 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1.1 libxxhash0_0.8.1-1 libzstd-dev_1.5.5+dfsg2-1 libzstd1_1.5.5+dfsg2-1 linux-libc-dev_6.1.38-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.11.2-3 mawk_1.3.4.20230808-1 mount_2.39.2-1 nano_7.2-1 ncurses-base_6.4+20230625-2 ncurses-bin_6.4+20230625-2 netbase_6.4 openssl_3.0.11-1 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-9 pinentry-curses_1.2.1-1 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 r-base-core_4.3.1-4 r-base-dev_4.3.1-4 r-bioc-biocgenerics_0.46.0-1 r-bioc-rhdf5lib_1.22.1+dfsg-1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-rhdf5filters-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 sysvinit-utils_3.07-1 tar_1.34+dfsg-1.2 tzdata_2023c-10 ucf_3.0043+nmu1 unzip_6.0-28 usrmerge_37 util-linux_2.39.2-1 util-linux-extra_2.39.2-1 x11-common_1:7.7+23 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1 xz-utils_5.4.4-0.1 zip_3.0-13 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Sat Jul 29 18:09:04 2023 UTC
gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA
gpgv: issuer "nilesh@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-rhdf5filters_1.12.1+dfsg-2.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-rhdf5filters in /<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg
dpkg-source: info: unpacking r-bioc-rhdf5filters_1.12.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-rhdf5filters_1.12.1+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_libs.patch
dpkg-source: info: applying hardening
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-5ebb9f7f-135b-4323-934c-b1a2f84d23f5
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-rhdf5filters
dpkg-buildpackage: info: source version 1.12.1+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/r-bioc-rhdf5filters.substvars debian/files
rm -fr -- debian/r-bioc-rhdf5filters/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p
" > debian/autoreconf.before
grep -q ^XDT_ configure.ac
autoreconf -f -i
find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p
" > debian/autoreconf.after
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
rm -fr -- /tmp/dh-xdg-rundir-5y1onN2e
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
rm -f -- debian/r-bioc-rhdf5filters.substvars
rm -fr -- debian/.debhelper/generated/r-bioc-rhdf5filters/ debian/r-bioc-rhdf5filters/ debian/tmp/
dh_auto_install --destdir=debian/r-bioc-rhdf5filters/ -a -O--buildsystem=R
install -m0755 -d /<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1\+dfsg/debian/r-bioc-rhdf5filters
I: R Package: rhdf5filters Version: 1.12.1
I: Building using R version 4.3.1-4
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Sat, 29 Jul 2023 23:34:53 +0530
mkdir -p /<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1\+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library
I: Using extra install flags: --configure-args="ax_cv_gcc_check_x86_cpu_init=yes ax_cv_gcc_x86_cpu_supports_sse2=no"
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1\+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library --clean "--configure-args=\"ax_cv_gcc_check_x86_cpu_init=yes ax_cv_gcc_x86_cpu_supports_sse2=no\"" . "--built-timestamp='Sat, 29 Jul 2023 23:34:53 +0530'"
* installing *source* package 'rhdf5filters' ...
** using staged installation
configuring the BLOSC filter...
x86_CPU=false
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether C compiler accepts -msse2... no
checking whether C compiler accepts -mavx2... no
configure: creating ./config.status
config.status: creating src/blosc/Makefile
configure: BZIP2_LIB=bzip2/libH5Zbz2.so
configure: BLOSC_LIB=blosc/libH5Zblosc.so
configure: LZF_LIB=lzf/libH5Zlzf.so
configure: ZSTD_LIB=zstd/libH5Zzstd.so
configure: creating ./config.status
config.status: creating src/blosc/Makefile
config.status: creating src/Makevars
** libs
using C compiler: 'gcc (Raspbian 12.2.0-14+rpi1) 12.2.0'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg/src'
make -C bzip2
make[2]: Entering directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg/src/bzip2'
gcc -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -shared H5Zbzip2.c -I/usr/include/hdf5/serial \
-lbz2 -Wl,-z,relro -o libH5Zbz2.so -Wl,-z,relro
make[2]: Leaving directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg/src/bzip2'
make -C lzf
make[2]: Entering directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg/src/lzf'
make -C lzf
make[3]: Entering directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg/src/lzf/lzf'
gcc -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c lzf_c.c
gcc -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c lzf_d.c
rm -f liblzf.a
ar cq liblzf.a lzf_c.o lzf_d.o
ranlib liblzf.a
make[3]: Leaving directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg/src/lzf/lzf'
gcc -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -shared H5Zlzf.c -I/usr/include/hdf5/serial \
-I./lzf/ ./lzf/liblzf.a -Wl,-z,relro -o libH5Zlzf.so
make[2]: Leaving directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg/src/lzf'
make -C blosc
make[2]: Entering directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg/src/blosc'
gcc -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o H5Zblosc.o H5Zblosc.c \
-I/usr/include/hdf5/serial
g++ -std=gnu++17 -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -Wl,-z,relro -shared -o libH5Zblosc.so H5Zblosc.o \
-lblosc -lzstd -lz
make[2]: Leaving directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg/src/blosc'
mkdir -p "/<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5filters-1.12.1+dfsg/00new/rhdf5filters/lib/"
cp bzip2/libH5Zbz2.so "/<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5filters-1.12.1+dfsg/00new/rhdf5filters/lib/"
cp blosc/libH5Zblosc.so "/<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5filters-1.12.1+dfsg/00new/rhdf5filters/lib/"
cp lzf/libH5Zlzf.so "/<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5filters-1.12.1+dfsg/00new/rhdf5filters/lib/"
gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I'/usr/lib/R/site-library/Rhdf5lib/include' -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c rhdf5filters.c -o rhdf5filters.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o rhdf5filters.so rhdf5filters.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5filters-1.12.1+dfsg/00new/rhdf5filters/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rhdf5filters)
rm -f /<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1\+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/LICENSE
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306.
I: Using r-bioc-biocstyle for Suggests:BiocStyle
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-tinytest for Suggests:tinytest
I: Using r-bioc-rhdf5 for Suggests:rhdf5 (>= 2.34.0)
I: Using r-bioc-rhdf5lib for LinkingTo:Rhdf5lib
I: BioConductor API version: r-api-bioc-3.17
I: Use r-bioc-rhdf5filters as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
install -m0755 -d debian/r-bioc-rhdf5filters/usr/share/doc/r-bioc-rhdf5filters
install -p -m0644 debian/copyright debian/r-bioc-rhdf5filters/usr/share/doc/r-bioc-rhdf5filters/copyright
dh_installchangelogs -a -O--buildsystem=R
install -m0755 -d debian/r-bioc-rhdf5filters/usr/share/doc/r-bioc-rhdf5filters
install -p -m0644 debian/.debhelper/generated/r-bioc-rhdf5filters/dh_installchangelogs.dch.trimmed debian/r-bioc-rhdf5filters/usr/share/doc/r-bioc-rhdf5filters/changelog.Debian
dh_installsystemduser -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
install -m0755 -d debian/r-bioc-rhdf5filters/usr/share/lintian/overrides
install -p -m0644 debian/r-bioc-rhdf5filters.lintian-overrides debian/r-bioc-rhdf5filters/usr/share/lintian/overrides/r-bioc-rhdf5filters
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
Using 1690653893 as canonical time
Normalizing debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/help/figures/logo.png using File::StripNondeterminism::handlers::png
dh_compress -a -O--buildsystem=R
cd debian/r-bioc-rhdf5filters
chmod a-x usr/share/doc/r-bioc-rhdf5filters/changelog.Debian
gzip -9nf usr/share/doc/r-bioc-rhdf5filters/changelog.Debian
cd '/<<BUILDDIR>>/r-bioc-rhdf5filters-1.12.1+dfsg'
dh_fixperms -a -O--buildsystem=R
find debian/r-bioc-rhdf5filters ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/r-bioc-rhdf5filters/usr/share/doc -type f -a -true -a ! -regex 'debian/r-bioc-rhdf5filters/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/r-bioc-rhdf5filters/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/r-bioc-rhdf5filters/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/r-bioc-rhdf5filters -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/r-bioc-rhdf5filters/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
install -m0755 -d debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/arm-linux-gnueabihf
dwz -mdebian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/arm-linux-gnueabihf/r-bioc-rhdf5filters.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/r-bioc-rhdf5filters.debug -- debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so
dwz: debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so: DWARF compression not beneficial - old size 457 new size 457
objcopy --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/arm-linux-gnueabihf/r-bioc-rhdf5filters.debug
chmod 0644 -- debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/arm-linux-gnueabihf/r-bioc-rhdf5filters.debug
dh_strip -a -O--buildsystem=R
install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/88
objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/88/a2921884eec9354ae761890e858e2767925969.debug
chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/88/a2921884eec9354ae761890e858e2767925969.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so
objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/88/a2921884eec9354ae761890e858e2767925969.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so
install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/d4
objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/d4/790f2b7d5fd67f90620461c01b7d90f0c539c1.debug
chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/d4/790f2b7d5fd67f90620461c01b7d90f0c539c1.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so
objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/d4/790f2b7d5fd67f90620461c01b7d90f0c539c1.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so
install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/51
objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/51/e62a5a3afc4a3ce4bb5c87ad2a78c0278f35d1.debug
chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/51/e62a5a3afc4a3ce4bb5c87ad2a78c0278f35d1.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so
objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/51/e62a5a3afc4a3ce4bb5c87ad2a78c0278f35d1.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so
install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/7a
objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/7a/c2a2e190ca65ee61f1d6cb0c5cac97838a240a.debug
chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/7a/c2a2e190ca65ee61f1d6cb0c5cac97838a240a.debug
strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so
objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/7a/c2a2e190ca65ee61f1d6cb0c5cac97838a240a.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so
install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.dwz
cp --reflink=auto -a debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.dwz
rm -fr debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz
rmdir -p --ignore-fail-on-non-empty debian/r-bioc-rhdf5filters/usr/lib/debug
install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/share/doc
ln -s r-bioc-rhdf5filters debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/share/doc/r-bioc-rhdf5filters-dbgsym
install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters
dh_makeshlibs -a -O--buildsystem=R
rm -f debian/r-bioc-rhdf5filters/DEBIAN/shlibs
dh_shlibdeps -a -O--buildsystem=R
install -m0755 -d debian/r-bioc-rhdf5filters/DEBIAN
dpkg-shlibdeps -Tdebian/r-bioc-rhdf5filters.substvars debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so
dh_installdeb -a -O--buildsystem=R
install -m0755 -d debian/r-bioc-rhdf5filters/DEBIAN
dh_gencontrol -a -O--buildsystem=R
install -m0755 -d debian/r-bioc-rhdf5filters/DEBIAN
echo misc:Depends= >> debian/r-bioc-rhdf5filters.substvars
echo misc:Pre-Depends= >> debian/r-bioc-rhdf5filters.substvars
install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/DEBIAN
dpkg-gencontrol -pr-bioc-rhdf5filters -ldebian/changelog -Tdebian/r-bioc-rhdf5filters.substvars -Pdebian/.debhelper/r-bioc-rhdf5filters/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=r-bioc-rhdf5filters-dbgsym "-DDepends=r-bioc-rhdf5filters (= \${binary:Version})" "-DDescription=debug symbols for r-bioc-rhdf5filters" "-DBuild-Ids=51e62a5a3afc4a3ce4bb5c87ad2a78c0278f35d1 7ac2a2e190ca65ee61f1d6cb0c5cac97838a240a 88a2921884eec9354ae761890e858e2767925969 d4790f2b7d5fd67f90620461c01b7d90f0c539c1" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/DEBIAN/control
dpkg-gencontrol -pr-bioc-rhdf5filters -ldebian/changelog -Tdebian/r-bioc-rhdf5filters.substvars -Pdebian/r-bioc-rhdf5filters
chmod 0644 -- debian/r-bioc-rhdf5filters/DEBIAN/control
dh_md5sums -a -O--buildsystem=R
install -m0755 -d debian/r-bioc-rhdf5filters/DEBIAN
cd debian/r-bioc-rhdf5filters >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/r-bioc-rhdf5filters/DEBIAN/md5sums
install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/DEBIAN
cd debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a -O--buildsystem=R
dpkg-deb --root-owner-group --build debian/r-bioc-rhdf5filters ..
dpkg-deb --root-owner-group --build debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root ..
dpkg-deb: building package 'r-bioc-rhdf5filters-dbgsym' in '../r-bioc-rhdf5filters-dbgsym_1.12.1+dfsg-2_armhf.deb'.
dpkg-deb: building package 'r-bioc-rhdf5filters' in '../r-bioc-rhdf5filters_1.12.1+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-bioc-rhdf5filters_1.12.1+dfsg-2_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../r-bioc-rhdf5filters_1.12.1+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-09-29T18:11:27Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-rhdf5filters_1.12.1+dfsg-2_armhf.changes:
------------------------------------------------
Format: 1.8
Date: Sat, 29 Jul 2023 23:34:53 +0530
Source: r-bioc-rhdf5filters
Binary: r-bioc-rhdf5filters r-bioc-rhdf5filters-dbgsym
Architecture: armhf
Version: 1.12.1+dfsg-2
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
r-bioc-rhdf5filters - GNU R HDF5 compression filters
Changes:
r-bioc-rhdf5filters (1.12.1+dfsg-2) unstable; urgency=medium
.
* Team Upload.
* Update patch to also copy blosc user libdir.
Checksums-Sha1:
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fdfe33f47148ae6ee52ac7fcaca27ea402d0dfe0 10502 r-bioc-rhdf5filters_1.12.1+dfsg-2_armhf.buildinfo
6ec9bcb2ccab6c654601ec41f8bc24ee50f41190 122840 r-bioc-rhdf5filters_1.12.1+dfsg-2_armhf.deb
Checksums-Sha256:
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9169d749f97b471ec5c06d51606121fc8b97c5acf9a8ea4e272fc433649f7895 10502 r-bioc-rhdf5filters_1.12.1+dfsg-2_armhf.buildinfo
ac41ad95312da94b3cbcbca77cf52e186dae17c8f0e41e21803e87b56870ceac 122840 r-bioc-rhdf5filters_1.12.1+dfsg-2_armhf.deb
Files:
1fe43ae64f00cd586456697db664f9be 8596 debug optional r-bioc-rhdf5filters-dbgsym_1.12.1+dfsg-2_armhf.deb
57f8800c58ac0afc2a54236aee64c508 10502 gnu-r optional r-bioc-rhdf5filters_1.12.1+dfsg-2_armhf.buildinfo
2d0b7ce7f3ad3db68985a98f85092e0c 122840 gnu-r optional r-bioc-rhdf5filters_1.12.1+dfsg-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-rhdf5filters-dbgsym_1.12.1+dfsg-2_armhf.deb
--------------------------------------------------
new Debian package, version 2.0.
size 8596 bytes: control archive=764 bytes.
546 bytes, 12 lines control
523 bytes, 5 lines md5sums
Package: r-bioc-rhdf5filters-dbgsym
Source: r-bioc-rhdf5filters
Version: 1.12.1+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 39
Depends: r-bioc-rhdf5filters (= 1.12.1+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-rhdf5filters
Build-Ids: 51e62a5a3afc4a3ce4bb5c87ad2a78c0278f35d1 7ac2a2e190ca65ee61f1d6cb0c5cac97838a240a 88a2921884eec9354ae761890e858e2767925969 d4790f2b7d5fd67f90620461c01b7d90f0c539c1
drwxr-xr-x root/root 0 2023-07-29 18:04 ./
drwxr-xr-x root/root 0 2023-07-29 18:04 ./usr/
drwxr-xr-x root/root 0 2023-07-29 18:04 ./usr/lib/
drwxr-xr-x root/root 0 2023-07-29 18:04 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-07-29 18:04 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-07-29 18:04 ./usr/lib/debug/.build-id/51/
-rw-r--r-- root/root 5792 2023-07-29 18:04 ./usr/lib/debug/.build-id/51/e62a5a3afc4a3ce4bb5c87ad2a78c0278f35d1.debug
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r-bioc-rhdf5filters_1.12.1+dfsg-2_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 122840 bytes: control archive=2100 bytes.
1311 bytes, 24 lines control
3334 bytes, 38 lines md5sums
Package: r-bioc-rhdf5filters
Version: 1.12.1+dfsg-2
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 219
Depends: r-api-4.0, r-api-bioc-3.17, r-bioc-rhdf5lib, libblosc1 (>= 1.7.0), libbz2-1.0, libc6 (>= 2.4)
Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-cran-tinytest, r-bioc-rhdf5 (>= 2.34.0)
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/rhdf5filters/
Description: GNU R HDF5 compression filters
This Bioconductor package provides a collection of compression filters for
use with HDF5 datasets.
.
One of the advantages of using HDF5 is that data stored on disk can be
compressed, reducing both the space required to store them and the time
needed to read those data. This data compression is applied as part of the
HDF5 “filter pipeline” that modifies data during I/O operations. HDF5
includes several filter algorithms as standard, and the version of the
HDF5 library found in Rhdf5lib is additionally compiled with support for
the deflate and szip compression filters which rely on third-party
compression libraries. Collectively HDF5 refer to these as the “internal”
filters. It is possible to use any combination of these (including none)
when writing data using rhdf5.
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 2356
Build-Time: 83
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 1177
Job: r-bioc-rhdf5filters_1.12.1+dfsg-2
Machine Architecture: armhf
Package: r-bioc-rhdf5filters
Package-Time: 1320
Source-Version: 1.12.1+dfsg-2
Space: 2356
Status: successful
Version: 1.12.1+dfsg-2
--------------------------------------------------------------------------------
Finished at 2023-09-29T18:11:27Z
Build needed 00:22:00, 2356k disc space