r-bioc-monocle →
2.30.0-1 →
armhf → 2023-12-16 22:49:33
sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023
+==============================================================================+
| r-bioc-monocle 2.30.0-1 (armhf) Sat, 16 Dec 2023 22:45:14 +0000 |
+==============================================================================+
Package: r-bioc-monocle
Version: 2.30.0-1
Source Version: 2.30.0-1
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-450de4ae-9193-4eda-801b-4a7de68c1670' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-monocle-7oQ9aR/resolver-I7r0nN' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.3 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
Fetched 29.3 MB in 5s (5593 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-monocle' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-monocle.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-monocle.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 9394 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-bioc-monocle 2.30.0-1 (dsc) [2534 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-bioc-monocle 2.30.0-1 (tar) [9386 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-bioc-monocle 2.30.0-1 (diff) [5964 B]
Fetched 9394 kB in 1s (8278 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-monocle-7oQ9aR/r-bioc-monocle-2.30.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-monocle-7oQ9aR' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-matrix, r-bioc-biobase, r-cran-ggplot2, r-cran-vgam, r-cran-ddrtree, r-cran-igraph, r-bioc-biocgenerics, r-bioc-hsmmsinglecell, r-cran-plyr, r-cran-cluster, r-cran-combinat, r-cran-fastica, r-cran-irlba, r-cran-matrixstats, r-cran-rtsne, r-cran-mass, r-cran-reshape2, r-cran-leidenbase, r-bioc-limma, r-cran-tibble, r-cran-dplyr, r-cran-qlcmatrix, r-cran-pheatmap, r-cran-stringr, r-cran-proxy, r-cran-slam, r-cran-viridis, r-bioc-biocviews, r-cran-rann, r-cran-rcpp, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-matrix, r-bioc-biobase, r-cran-ggplot2, r-cran-vgam, r-cran-ddrtree, r-cran-igraph, r-bioc-biocgenerics, r-bioc-hsmmsinglecell, r-cran-plyr, r-cran-cluster, r-cran-combinat, r-cran-fastica, r-cran-irlba, r-cran-matrixstats, r-cran-rtsne, r-cran-mass, r-cran-reshape2, r-cran-leidenbase, r-bioc-limma, r-cran-tibble, r-cran-dplyr, r-cran-qlcmatrix, r-cran-pheatmap, r-cran-stringr, r-cran-proxy, r-cran-slam, r-cran-viridis, r-bioc-biocviews, r-cran-rann, r-cran-rcpp, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [615 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [1110 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1143 B]
Fetched 2868 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils bsdutils
ca-certificates cpp-13 dctrl-tools debhelper dh-autoreconf dh-r
dh-strip-nondeterminism dpkg-dev dwz file fontconfig fontconfig-config
fonts-dejavu-core fonts-dejavu-mono g++-13 gcc-13 gcc-13-base gettext
gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libasan8 libatomic1
libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
libblkid1 libboost1.81-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libcc1-0
libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl
libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl
libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdpkg-perl libdynaloader-functions-perl
libelf1 libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgcc-13-dev libgcc-s1 libgfortran-13-dev
libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev
liblzma5 libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmount1 libmro-compat-perl libnamespace-clean-perl libncurses-dev
libncurses6 libncursesw6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0
libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3
libpng-dev libpng16-16 libpsl5 libreadline-dev libreadline8 librtmp1
libsharpyuv0 libsm6 libsmartcols1 libssh2-1 libstdc++-13-dev libstdc++6
libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtinfo6 libtk8.6
libtool libtry-tiny-perl libubsan1 libuchardet0 liburi-perl libuuid1
libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4
man-db mount ncurses-base ncurses-bin openssl pkg-config pkgconf pkgconf-bin
po-debconf r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics
r-bioc-biocviews r-bioc-graph r-bioc-hsmmsinglecell r-bioc-limma r-bioc-rbgl
r-cran-bh r-cran-biocmanager r-cran-bitops r-cran-cli r-cran-cluster
r-cran-colorspace r-cran-combinat r-cran-cpp11 r-cran-ddrtree r-cran-docopt
r-cran-dplyr r-cran-fansi r-cran-farver r-cran-fastica r-cran-generics
r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-igraph
r-cran-irlba r-cran-isoband r-cran-labeling r-cran-lattice r-cran-leidenbase
r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix
r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pheatmap
r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-proxy
r-cran-qlcmatrix r-cran-r6 r-cran-rann r-cran-rcolorbrewer r-cran-rcpp
r-cran-rcppeigen r-cran-rcurl r-cran-reshape2 r-cran-rlang r-cran-rtsne
r-cran-runit r-cran-scales r-cran-slam r-cran-sparsesvd r-cran-statmod
r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyselect r-cran-utf8
r-cran-vctrs r-cran-vgam r-cran-viridis r-cran-viridislite r-cran-withr
r-cran-xml readline-common sensible-utils ucf unzip util-linux x11-common
xauth xdg-utils xz-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-13-locales cpp-13-doc
debtags dh-make postgresql-client-common debian-keyring gcc-13-doc
gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-13-doc
libcoarrays-dev groff liblapack-doc libboost1.81-doc libboost-atomic1.81-dev
libboost-chrono1.81-dev libboost-container1.81-dev libboost-context1.81-dev
libboost-contract1.81-dev libboost-coroutine1.81-dev
libboost-date-time1.81-dev libboost-exception1.81-dev libboost-fiber1.81-dev
libboost-filesystem1.81-dev libboost-graph1.81-dev
libboost-graph-parallel1.81-dev libboost-iostreams1.81-dev
libboost-locale1.81-dev libboost-log1.81-dev libboost-math1.81-dev
libboost-mpi1.81-dev libboost-mpi-python1.81-dev libboost-numpy1.81-dev
libboost-program-options1.81-dev libboost-python1.81-dev
libboost-random1.81-dev libboost-regex1.81-dev
libboost-serialization1.81-dev libboost-stacktrace1.81-dev
libboost-system1.81-dev libboost-test1.81-dev libboost-thread1.81-dev
libboost-timer1.81-dev libboost-type-erasure1.81-dev libboost-wave1.81-dev
libboost1.81-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.81-dev git
bzr low-memory-monitor icu-doc liblzma-doc cryptsetup-bin ncurses-doc
libscalar-number-perl readline-doc libstdc++-13-doc tcl8.6 tk8.6 libtool-doc
gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl
libcurl4-gnutls-dev m4-doc apparmor less www-browser nfs-common
libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-all
r-bioc-biocstyle r-cran-knitr r-bioc-s4vectors r-bioc-iranges
r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools
r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate
r-cran-commonmark r-cran-sparsem r-cran-biasedurn r-cran-ellipse
r-cran-gplots r-cran-locfit r-bioc-go.db r-bioc-org.hs.eg.db r-cran-callr
r-cran-covr r-cran-crayon r-cran-digest r-cran-htmltools r-cran-htmlwidgets
r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot
r-cran-rstudioapi r-cran-whoami r-cran-kernsmooth r-cran-kernlab
r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-png r-cran-jpeg
r-cran-dbi r-cran-forcats r-cran-r.utils r-cran-rsqlite r-cran-waldo
r-cran-magick r-cran-sf r-cran-getopt r-cran-bit64 r-cran-formattable
r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units
r-cran-vdiffr r-cran-testthat r-cran-inline r-cran-dichromat r-cran-bench
r-cran-blob r-cran-brio r-cran-evaluate r-cran-here r-cran-hms
r-cran-pkgbuild r-cran-pkgload r-cran-purrr r-cran-tidyr dosfstools kbd
util-linux-extra util-linux-locales
Recommended packages:
devscripts cme git-buildpackage libalgorithm-merge-perl curl | wget | lynx
bzip2-doc libclass-c3-xs-perl libfile-fcntllock-perl libdevel-lexalias-perl
libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs
libio-compress-brotli-perl libdevel-partialdump-perl libgpm2 libpng-tools
publicsuffix libltdl-dev uuid-runtime libmail-sendmail-perl r-recommended
r-doc-html r-bioc-biocversion r-cran-remotes r-cran-rmarkdown
r-cran-testthat r-cran-curl r-cran-knitr r-cran-mockery r-cran-bench
r-cran-brio r-cran-callr r-cran-covr r-cran-decor r-cran-desc r-cran-lobstr
r-cran-progress r-cran-broom r-cran-dbi r-cran-dbplyr r-cran-purrr
r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite r-cran-tidyr r-cran-unitizer
r-cran-pkgload r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps
r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart
r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-ape r-cran-digest
r-cran-rgl r-cran-crayon r-cran-lintr r-cran-tidyverse r-cran-base64enc
r-cran-markdown r-cran-r.devices r-cran-r.rsp r-cran-lubridate r-cran-abind
r-cran-doparallel r-cran-foreach r-cran-iterators r-cran-itertools
r-cran-cba r-cran-fs r-cran-usethis r-cran-bit64 r-cran-hms r-cran-htmltools
r-cran-htmlwidgets r-cran-data.table r-cran-mockr r-cran-formattable
r-cran-pkgdown r-cran-waldo r-cran-zeallot libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libboost1.81-dev libbrotli1
libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsharpyuv0 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db openssl pkg-config pkgconf pkgconf-bin
po-debconf r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics
r-bioc-biocviews r-bioc-graph r-bioc-hsmmsinglecell r-bioc-limma r-bioc-rbgl
r-cran-bh r-cran-biocmanager r-cran-bitops r-cran-cli r-cran-cluster
r-cran-colorspace r-cran-combinat r-cran-cpp11 r-cran-ddrtree r-cran-docopt
r-cran-dplyr r-cran-fansi r-cran-farver r-cran-fastica r-cran-generics
r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-igraph
r-cran-irlba r-cran-isoband r-cran-labeling r-cran-lattice r-cran-leidenbase
r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix
r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pheatmap
r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-proxy
r-cran-qlcmatrix r-cran-r6 r-cran-rann r-cran-rcolorbrewer r-cran-rcpp
r-cran-rcppeigen r-cran-rcurl r-cran-reshape2 r-cran-rlang r-cran-rtsne
r-cran-runit r-cran-scales r-cran-slam r-cran-sparsesvd r-cran-statmod
r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyselect r-cran-utf8
r-cran-vctrs r-cran-vgam r-cran-viridis r-cran-viridislite r-cran-withr
r-cran-xml sbuild-build-depends-main-dummy sensible-utils ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
bsdutils cpp-13 dpkg-dev g++-13 gcc-13 gcc-13-base libasan8 libatomic1
libblkid1 libcc1-0 libdpkg-perl libgcc-13-dev libgcc-s1 libgomp1 liblzma5
libmount1 libncursesw6 libreadline8 libsmartcols1 libstdc++-13-dev
libstdc++6 libtinfo6 libubsan1 libuuid1 mount ncurses-base ncurses-bin
readline-common util-linux xz-utils
30 upgraded, 243 newly installed, 0 to remove and 46 not upgraded.
1 not fully installed or removed.
Need to get 228 MB/230 MB of archives.
After this operation, 567 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1064 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.3-2 [134 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.3-2 [86.6 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf ncurses-bin armhf 6.4+20231121-1 [420 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.3-2 [1113 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf ncurses-base all 6.4+20231121-1 [267 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf readline-common all 8.2-3 [69.1 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libcc1-0 armhf 13.2.0-7+rpi1 [35.4 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libgomp1 armhf 13.2.0-7+rpi1 [104 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf gcc-13-base armhf 13.2.0-7+rpi1 [41.0 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libatomic1 armhf 13.2.0-7+rpi1 [8448 B]
Get:12 http://172.17.4.1/private trixie-staging/main armhf libasan8 armhf 13.2.0-7+rpi1 [2391 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libubsan1 armhf 13.2.0-7+rpi1 [964 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libstdc++6 armhf 13.2.0-7+rpi1 [578 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf g++-13 armhf 13.2.0-7+rpi1 [8137 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libstdc++-13-dev armhf 13.2.0-7+rpi1 [2208 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libgcc-13-dev armhf 13.2.0-7+rpi1 [764 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf gcc-13 armhf 13.2.0-7+rpi1 [14.7 MB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf cpp-13 armhf 13.2.0-7+rpi1 [7372 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libgcc-s1 armhf 13.2.0-7+rpi1 [36.3 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.3-2 [145 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf liblzma5 armhf 5.4.5-0.1 [226 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf libmount1 armhf 2.39.3-2 [168 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libtinfo6 armhf 6.4+20231121-1 [325 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libncursesw6 armhf 6.4+20231121-1 [106 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libreadline8 armhf 8.2-3 [143 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.3-2 [102 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libuuid1 armhf 2.39.3-2 [28.2 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.3-2 [81.2 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-1 [1358 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf sensible-utils all 0.0.20 [19.3 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.0.11-1 [1367 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf xz-utils armhf 5.4.5-0.1 [499 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.8 [82.1 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.10-1 [10.6 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.8 [956 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf zip armhf 3.0-13 [207 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf unzip armhf 6.0-28 [147 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libpaper1 armhf 1.1.29 [11.9 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libpaper-utils armhf 1.1.29 [8416 B]
Get:68 http://172.17.4.1/private trixie-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-2 [258 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.58.0-1 [61.7 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-3 [195 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 8.4.0-2+rpi1 [362 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.3-1 [1256 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-7+rpi1 [247 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-3 [188 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-3 [40.3 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-3 [30.5 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-4 [132 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-3 [299 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.2-1 [26.4 MB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libgfortran-13-dev armhf 13.2.0-7+rpi1 [293 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf gfortran-13 armhf 13.2.0-7+rpi1 [7839 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:13.2.0-1+rpi1 [1424 B]
Get:127 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20231121-1 [80.8 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20231121-1 [290 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-3 [124 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.40-2 [336 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.5-0.1 [278 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-4 [174 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-4 [9956 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:147 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:148 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.2-1 [4504 B]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.06-1 [10.7 kB]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.45-1 [82.0 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:175 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:176 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:179 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:180 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:185 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2206-1 [795 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:190 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:191 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1 [12.0 kB]
Get:192 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:193 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.4.0-2+rpi1 [358 kB]
Get:194 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10 [55.8 kB]
Get:195 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:196 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20231201 [41.9 kB]
Get:197 http://172.17.4.1/private trixie-staging/main armhf libboost1.81-dev armhf 1.81.0-7 [10.4 MB]
Get:198 http://172.17.4.1/private trixie-staging/main armhf r-cran-littler armhf 0.3.18-2 [86.0 kB]
Get:199 http://172.17.4.1/private trixie-staging/main armhf littler all 0.3.18-2 [14.8 kB]
Get:200 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocgenerics all 0.48.1-2 [597 kB]
Get:201 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biobase armhf 2.62.0-1 [2118 kB]
Get:202 http://172.17.4.1/private trixie-staging/main armhf r-bioc-graph armhf 1.80.0-1 [1279 kB]
Get:203 http://172.17.4.1/private trixie-staging/main armhf r-cran-bh all 1.81.0-1 [5776 B]
Get:204 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rbgl armhf 1.78.0+dfsg-1 [502 kB]
Get:205 http://172.17.4.1/private trixie-staging/main armhf r-cran-xml armhf 3.99-0.16-1 [1738 kB]
Get:206 http://172.17.4.1/private trixie-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:207 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcurl armhf 1.98-1.13+dfsg-1 [781 kB]
Get:208 http://172.17.4.1/private trixie-staging/main armhf r-cran-runit all 0.4.32-3 [294 kB]
Get:209 http://172.17.4.1/private trixie-staging/main armhf r-cran-biocmanager all 1.30.22+dfsg-2 [126 kB]
Get:210 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocviews all 1.70.0-1 [649 kB]
Get:211 http://172.17.4.1/private trixie-staging/main armhf r-bioc-hsmmsinglecell all 1.22.0-1 [16.8 MB]
Get:212 http://172.17.4.1/private trixie-staging/main armhf r-cran-statmod armhf 1.5.0-1 [295 kB]
Get:213 http://172.17.4.1/private trixie-staging/main armhf r-bioc-limma armhf 3.58.1+dfsg-1 [1945 kB]
Get:214 http://172.17.4.1/private trixie-staging/main armhf r-cran-cli armhf 3.6.1-1 [1307 kB]
Get:215 http://172.17.4.1/private trixie-staging/main armhf r-cran-cluster armhf 2.1.6-1 [561 kB]
Get:216 http://172.17.4.1/private trixie-staging/main armhf r-cran-colorspace armhf 2.1-0+dfsg-1 [1691 kB]
Get:217 http://172.17.4.1/private trixie-staging/main armhf r-cran-combinat all 0.0-8-7 [42.8 kB]
Get:218 http://172.17.4.1/private trixie-staging/main armhf r-cran-cpp11 all 0.4.6-1 [219 kB]
Get:219 http://172.17.4.1/private trixie-staging/main armhf r-cran-lattice armhf 0.22-5-1 [1393 kB]
Get:220 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrix armhf 1.6-4-1 [3691 kB]
Get:221 http://172.17.4.1/private trixie-staging/main armhf r-cran-irlba armhf 2.3.5.1-2 [292 kB]
Get:222 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgkitten all 0.2.3-1 [26.7 kB]
Get:223 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcpp armhf 1.0.11-1 [2043 kB]
Get:224 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcppeigen armhf 0.3.3.9.4-1 [1150 kB]
Get:225 http://172.17.4.1/private trixie-staging/main armhf r-cran-ddrtree armhf 0.1.5-2 [123 kB]
Get:226 http://172.17.4.1/private trixie-staging/main armhf r-cran-docopt all 0.7.1-2 [249 kB]
Get:227 http://172.17.4.1/private trixie-staging/main armhf r-cran-generics all 0.1.3-1 [81.4 kB]
Get:228 http://172.17.4.1/private trixie-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:229 http://172.17.4.1/private trixie-staging/main armhf r-cran-rlang armhf 1.1.2-1 [1654 kB]
Get:230 http://172.17.4.1/private trixie-staging/main armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
Get:231 http://172.17.4.1/private trixie-staging/main armhf r-cran-magrittr armhf 2.0.3-1 [200 kB]
Get:232 http://172.17.4.1/private trixie-staging/main armhf r-cran-fansi armhf 1.0.5-1 [611 kB]
Get:233 http://172.17.4.1/private trixie-staging/main armhf r-cran-utf8 armhf 1.2.4-1 [129 kB]
Get:234 http://172.17.4.1/private trixie-staging/main armhf r-cran-vctrs armhf 0.6.4-1 [1336 kB]
Get:235 http://172.17.4.1/private trixie-staging/main armhf r-cran-pillar all 1.9.0+dfsg-1 [463 kB]
Get:236 http://172.17.4.1/private trixie-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:237 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:238 http://172.17.4.1/private trixie-staging/main armhf r-cran-tibble armhf 3.2.1+dfsg-2 [422 kB]
Get:239 http://172.17.4.1/private trixie-staging/main armhf r-cran-withr all 2.5.0-1 [236 kB]
Get:240 http://172.17.4.1/private trixie-staging/main armhf r-cran-tidyselect armhf 1.2.0+dfsg-1 [222 kB]
Get:241 http://172.17.4.1/private trixie-staging/main armhf r-cran-dplyr armhf 1.1.4-1 [1520 kB]
Get:242 http://172.17.4.1/private trixie-staging/main armhf r-cran-farver armhf 2.1.1-1 [1390 kB]
Get:243 http://172.17.4.1/private trixie-staging/main armhf r-cran-fastica armhf 1.2-4-1 [39.6 kB]
Get:244 http://172.17.4.1/private trixie-staging/main armhf r-cran-gtable all 0.3.4+dfsg-1 [221 kB]
Get:245 http://172.17.4.1/private trixie-staging/main armhf r-cran-isoband armhf 0.2.7-1 [1611 kB]
Get:246 http://172.17.4.1/private trixie-staging/main armhf r-cran-mass armhf 7.3-60-2 [1114 kB]
Get:247 http://172.17.4.1/private trixie-staging/main armhf r-cran-nlme armhf 3.1.164-1 [2267 kB]
Get:248 http://172.17.4.1/private trixie-staging/main armhf r-cran-mgcv armhf 1.9-0-1 [3196 kB]
Get:249 http://172.17.4.1/private trixie-staging/main armhf r-cran-labeling all 0.4.3-1 [62.4 kB]
Get:250 http://172.17.4.1/private trixie-staging/main armhf r-cran-munsell all 0.5.0-2 [236 kB]
Get:251 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB]
Get:252 http://172.17.4.1/private trixie-staging/main armhf r-cran-viridislite all 0.4.2-2 [1299 kB]
Get:253 http://172.17.4.1/private trixie-staging/main armhf r-cran-scales all 1.2.1-1 [614 kB]
Get:254 http://172.17.4.1/private trixie-staging/main armhf r-cran-ggplot2 all 3.4.4+dfsg-1 [3405 kB]
Get:255 http://172.17.4.1/private trixie-staging/main armhf r-cran-gridextra all 2.3-3 [1024 kB]
Get:256 http://172.17.4.1/private trixie-staging/main armhf r-cran-igraph armhf 1.5.1-1 [4165 kB]
Get:257 http://172.17.4.1/private trixie-staging/main armhf r-cran-leidenbase armhf 0.1.25-2 [2124 kB]
Get:258 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrixstats armhf 1.1.0-1 [471 kB]
Get:259 http://172.17.4.1/private trixie-staging/main armhf r-cran-pheatmap all 1.0.12-2 [77.9 kB]
Get:260 http://172.17.4.1/private trixie-staging/main armhf r-cran-plyr armhf 1.8.9-1 [827 kB]
Get:261 http://172.17.4.1/private trixie-staging/main armhf r-cran-proxy armhf 0.4-27-1 [180 kB]
Get:262 http://172.17.4.1/private trixie-staging/main armhf r-cran-slam armhf 0.1-50-1 [181 kB]
Get:263 http://172.17.4.1/private trixie-staging/main armhf r-cran-sparsesvd armhf 0.2-2-1 [35.4 kB]
Get:264 http://172.17.4.1/private trixie-staging/main armhf r-cran-qlcmatrix all 0.9.7-2 [3297 kB]
Get:265 http://172.17.4.1/private trixie-staging/main armhf r-cran-rann armhf 2.6.1-1+b1 [38.3 kB]
Get:266 http://172.17.4.1/private trixie-staging/main armhf r-cran-stringi armhf 1.8.2-1 [831 kB]
Get:267 http://172.17.4.1/private trixie-staging/main armhf r-cran-stringr all 1.5.1-1 [296 kB]
Get:268 http://172.17.4.1/private trixie-staging/main armhf r-cran-reshape2 armhf 1.4.4-2 [110 kB]
Get:269 http://172.17.4.1/private trixie-staging/main armhf r-cran-rtsne armhf 0.16-1 [90.1 kB]
Get:270 http://172.17.4.1/private trixie-staging/main armhf r-cran-vgam armhf 1.1-9-1 [7331 kB]
Get:271 http://172.17.4.1/private trixie-staging/main armhf r-cran-viridis all 0.6.4-1 [3007 kB]
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invoke-rc.d: could not determine current runlevel
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Setting up libtimedate-perl (2.3300-2) ...
Setting up liblzma-dev:armhf (5.4.5-0.1) ...
Setting up libubsan1:armhf (13.2.0-7+rpi1) ...
Setting up libsub-name-perl:armhf (0.27-1) ...
Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-3) ...
Setting up libpcre2-posix3:armhf (10.42-4) ...
Setting up mount (2.39.3-2) ...
Setting up sensible-utils (0.0.20) ...
Setting up libtiff6:armhf (4.5.1+git230720-3) ...
Setting up libasan8:armhf (13.2.0-7+rpi1) ...
Setting up libuchardet0:armhf (0.0.8-1) ...
Setting up libsub-override-perl (0.10-1) ...
Setting up libthai-data (0.1.29-1) ...
Setting up libdevel-globaldestruction-perl (0.14-4) ...
Setting up libssh2-1:armhf (1.11.0-3) ...
Setting up libdevel-stacktrace-perl (2.0400-2) ...
Setting up openssl (3.0.11-1) ...
Setting up libbsd0:armhf (0.11.7-4) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libicu-dev:armhf (72.1-4) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libcc1-0:armhf (13.2.0-7+rpi1) ...
Setting up liburi-perl (5.21-1) ...
Setting up libblas-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-5+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up r-cran-bh (1.81.0-1) ...
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.06-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.4+20231121-1) ...
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-14) ...
Setting up libpcre2-dev:armhf (10.42-4) ...
Setting up libtool (2.4.7-7) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up fontconfig-config (2.14.2-6) ...
Setting up libpng-dev:armhf (1.6.40-2) ...
Setting up libjpeg-dev:armhf (1:2.1.5-2) ...
Setting up libcurl3-gnutls:armhf (8.4.0-2+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:armhf (8.2-3) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up dpkg-dev (1.22.1+rpi1) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.114-1) ...
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up ucf (3.0043+nmu1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up libgcc-13-dev:armhf (13.2.0-7+rpi1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libcurl4:armhf (8.4.0-2+rpi1) ...
Setting up libx11-6:armhf (2:1.8.7-1) ...
Setting up libharfbuzz0b:armhf (8.0.1-1) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libgfortran-13-dev:armhf (13.2.0-7+rpi1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libstdc++-13-dev:armhf (13.2.0-7+rpi1) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (6.45-1) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libpaper1:armhf (1.1.29) ...
Creating config file /etc/papersize with new version
Setting up fontconfig (2.14.2-6) ...
Regenerating fonts cache... done.
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libpango-1.0-0:armhf (1.51.0+ds-3) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-10) ...
Setting up libpaper-utils (1.1.29) ...
Setting up man-db (2.12.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcairo2:armhf (1.18.0-1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up gcc-13 (13.2.0-7+rpi1) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1.1) ...
Setting up xauth (1:1.1.2-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libpangoft2-1.0-0:armhf (1.51.0+ds-3) ...
Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-3) ...
Setting up g++-13 (13.2.0-7+rpi1) ...
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Setting up debhelper (13.11.8) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up gfortran-13 (13.2.0-7+rpi1) ...
Setting up r-base-core (4.3.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-labeling (0.4.3-1) ...
Setting up r-cran-lattice (0.22-5-1) ...
Setting up r-cran-nlme (3.1.164-1) ...
Setting up r-cran-farver (2.1.1-1) ...
Setting up r-cran-xml (3.99-0.16-1) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up r-cran-viridislite (0.4.2-2) ...
Setting up r-cran-cluster (2.1.6-1) ...
Setting up r-cran-statmod (1.5.0-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up r-cran-proxy (0.4-27-1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.3-1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-cran-littler (0.3.18-2) ...
Setting up r-cran-rcpp (1.0.11-1) ...
Setting up r-cran-combinat (0.0-8-7) ...
Setting up r-bioc-biocgenerics (0.48.1-2) ...
Setting up r-cran-rlang (1.1.2-1) ...
Setting up r-cran-matrixstats (1.1.0-1) ...
Setting up littler (0.3.18-2) ...
Setting up r-cran-vgam (1.1-9-1) ...
Setting up r-cran-withr (2.5.0-1) ...
Setting up r-cran-slam (0.1-50-1) ...
Setting up libmoose-perl:armhf (2.2206-1) ...
Setting up r-cran-generics (0.1.3-1) ...
Setting up r-cran-rann (2.6.1-1+b1) ...
Setting up r-cran-docopt (0.7.1-2) ...
Setting up r-cran-fansi (1.0.5-1) ...
Setting up r-cran-fastica (1.2-4-1) ...
Setting up r-cran-mass (7.3-60-2) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-cli (3.6.1-1) ...
Setting up gfortran (4:13.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-cran-biocmanager (1.30.22+dfsg-2) ...
Setting up r-bioc-biobase (2.62.0-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.4-1) ...
Setting up r-cran-colorspace (2.1-0+dfsg-1) ...
Setting up r-cran-stringi (1.8.2-1) ...
Setting up r-cran-cpp11 (0.4.6-1) ...
Setting up r-cran-plyr (1.8.9-1) ...
Setting up r-cran-rcolorbrewer (1.1-3-1) ...
Setting up r-cran-isoband (0.2.7-1) ...
Setting up r-cran-runit (0.4.32-3) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up r-bioc-limma (3.58.1+dfsg-1) ...
Setting up r-cran-gtable (0.3.4+dfsg-1) ...
Setting up r-cran-matrix (1.6-4-1) ...
Setting up r-cran-irlba (2.3.5.1-2) ...
Setting up r-cran-mgcv (1.9-0-1) ...
Setting up r-cran-rtsne (0.16-1) ...
Setting up r-cran-rcurl (1.98-1.13+dfsg-1) ...
Setting up r-cran-vctrs (0.6.4-1) ...
Setting up r-cran-rcppeigen (0.3.3.9.4-1) ...
Setting up r-bioc-graph (1.80.0-1) ...
Setting up r-cran-pillar (1.9.0+dfsg-1) ...
Setting up r-bioc-rbgl (1.78.0+dfsg-1) ...
Setting up r-bioc-biocviews (1.70.0-1) ...
Setting up r-bioc-hsmmsinglecell (1.22.0-1) ...
Setting up r-base-dev (4.3.2-1) ...
Setting up r-cran-stringr (1.5.1-1) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up r-cran-munsell (0.5.0-2) ...
Setting up r-cran-tibble (3.2.1+dfsg-2) ...
Setting up r-cran-igraph (1.5.1-1) ...
Setting up r-cran-sparsesvd (0.2-2-1) ...
Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
Setting up r-cran-leidenbase (0.1.25-2) ...
Setting up r-cran-reshape2 (1.4.4-2) ...
Setting up r-cran-gridextra (2.3-3) ...
Setting up r-cran-ddrtree (0.1.5-2) ...
Setting up r-cran-scales (1.2.1-1) ...
Setting up r-cran-dplyr (1.1.4-1) ...
Setting up dh-r (20231201) ...
Setting up r-cran-pheatmap (1.0.12-2) ...
Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ...
Setting up r-cran-qlcmatrix (0.9.7-2) ...
Setting up r-cran-viridis (0.6.4-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep 1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-7+rpi1 gcc-12_12.3.0-10+rpi1 gcc-13_13.2.0-7+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++-13-dev_13.2.0-7+rpi1 libstdc++6_13.2.0-7+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.2 bash_5.2.15-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.3-2 bsdutils_1:2.39.3-2 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20230311 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-10+rpi1 cpp-13_13.2.0-7+rpi1 dash_0.5.12-6 dctrl-tools_2.24-3 debconf_1.5.82 debhelper_13.11.8 debianutils_5.14 dh-autoreconf_20 dh-r_20231201 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-6 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-7+rpi1 gcc_4:13.2.0-1+rpi1 gcc-10-base_10.4.0-7+rpi1 gcc-12_12.3.0-10+rpi1 gcc-12-base_12.3.0-10+rpi1 gcc-13_13.2.0-7+rpi1 gcc-13-base_13.2.0-7+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gfortran_4:13.2.0-1+rpi1 gfortran-13_13.2.0-7+rpi1 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 icu-devtools_72.1-4 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-7+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-7+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.41-6+rpi1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.3-2 libboost1.81-dev_1.81.0-7 libbrotli1_1.1.0-2 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.37-12+rpi2 libc-dev-bin_2.37-12+rpi2 libc6_2.37-12+rpi2 libc6-dev_2.37-12+rpi2 libcairo2_1.18.0-1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcc1-0_13.2.0-7+rpi1 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2+b1 libclone-perl_0.46-1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libcurl3-gnutls_8.4.0-2+rpi1 libcurl4_8.4.0-2+rpi1 libdata-optlist-perl_0.114-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.271 libdebhelper-perl_13.11.8 libdeflate0_1.18-1 libdevel-callchecker-perl_0.008-2 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-2 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.22.1+rpi1 libdynaloader-functions-perl_0.003-3 libelf1_0.188-2.1+rpi1 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 libexpat1_2.5.0-2 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r-cran-farver_2.1.1-1 r-cran-fastica_1.2-4-1 r-cran-generics_0.1.3-1 r-cran-ggplot2_3.4.4+dfsg-1 r-cran-glue_1.6.2-1 r-cran-gridextra_2.3-3 r-cran-gtable_0.3.4+dfsg-1 r-cran-igraph_1.5.1-1 r-cran-irlba_2.3.5.1-2 r-cran-isoband_0.2.7-1 r-cran-labeling_0.4.3-1 r-cran-lattice_0.22-5-1 r-cran-leidenbase_0.1.25-2 r-cran-lifecycle_1.0.4+dfsg-1 r-cran-littler_0.3.18-2 r-cran-magrittr_2.0.3-1 r-cran-mass_7.3-60-2 r-cran-matrix_1.6-4-1 r-cran-matrixstats_1.1.0-1 r-cran-mgcv_1.9-0-1 r-cran-munsell_0.5.0-2 r-cran-nlme_3.1.164-1 r-cran-pheatmap_1.0.12-2 r-cran-pillar_1.9.0+dfsg-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.3-1 r-cran-plyr_1.8.9-1 r-cran-proxy_0.4-27-1 r-cran-qlcmatrix_0.9.7-2 r-cran-r6_2.5.1-1 r-cran-rann_2.6.1-1+b1 r-cran-rcolorbrewer_1.1-3-1 r-cran-rcpp_1.0.11-1 r-cran-rcppeigen_0.3.3.9.4-1 r-cran-rcurl_1.98-1.13+dfsg-1 r-cran-reshape2_1.4.4-2 r-cran-rlang_1.1.2-1 r-cran-rtsne_0.16-1 r-cran-runit_0.4.32-3 r-cran-scales_1.2.1-1 r-cran-slam_0.1-50-1 r-cran-sparsesvd_0.2-2-1 r-cran-statmod_1.5.0-1 r-cran-stringi_1.8.2-1 r-cran-stringr_1.5.1-1 r-cran-tibble_3.2.1+dfsg-2 r-cran-tidyselect_1.2.0+dfsg-1 r-cran-utf8_1.2.4-1 r-cran-vctrs_0.6.4-1 r-cran-vgam_1.1-9-1 r-cran-viridis_0.6.4-1 r-cran-viridislite_0.4.2-2 r-cran-withr_2.5.0-1 r-cran-xml_3.99-0.16-1 raspbian-archive-keyring_20120528.2 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-3 tar_1.34+dfsg-1.2 tzdata_2023c-10 ucf_3.0043+nmu1 unzip_6.0-28 usr-is-merged_37 util-linux_2.39.3-2 x11-common_1:7.7+23 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1 xz-utils_5.4.5-0.1 zip_3.0-13 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: r-bioc-monocle
Binary: r-bioc-monocle
Architecture: any
Version: 2.30.0-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://bioconductor.org/packages/monocle/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-monocle
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-monocle.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-matrix, r-bioc-biobase, r-cran-ggplot2, r-cran-vgam, r-cran-ddrtree, r-cran-igraph, r-bioc-biocgenerics, r-bioc-hsmmsinglecell, r-cran-plyr, r-cran-cluster, r-cran-combinat, r-cran-fastica, r-cran-irlba, r-cran-matrixstats, r-cran-rtsne, r-cran-mass, r-cran-reshape2, r-cran-leidenbase, r-bioc-limma, r-cran-tibble, r-cran-dplyr, r-cran-qlcmatrix, r-cran-pheatmap, r-cran-stringr, r-cran-proxy, r-cran-slam, r-cran-viridis, r-bioc-biocviews, r-cran-rann, r-cran-rcpp
Package-List:
r-bioc-monocle deb gnu-r optional arch=any
Checksums-Sha1:
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Checksums-Sha256:
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Files:
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2a1e03c17b5d593c0cd4e995323f729e 5964 r-bioc-monocle_2.30.0-1.debian.tar.xz
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gpgv: Signature made Thu Nov 30 09:46:22 2023 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-monocle_2.30.0-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-monocle in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-monocle_2.30.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-monocle_2.30.0-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying drop-bioc-destiny-from-suggests.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-450de4ae-9193-4eda-801b-4a7de68c1670
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-bioc-monocle
dpkg-buildpackage: info: source version 2.30.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-monocle/ -a -O--buildsystem=R
I: R Package: monocle Version: 2.30.0
I: Building using R version 4.3.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Thu, 30 Nov 2023 10:43:19 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-monocle/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-monocle/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 30 Nov 2023 10:43:19 +0100'"
* installing *source* package ‘monocle’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Raspbian 13.2.0-7+rpi1) 13.2.0’
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c clustering.cpp -o clustering.o
g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o monocle.so RcppExports.o clustering.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-monocle/usr/lib/R/site-library/00LOCK-r-bioc-monocle-2.30.0/00new/monocle/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (monocle)
W: Ignoring specified R dependency: R (>= 2.10.0)
I: Version replacement between package version 1.2-6 and Debian version 1.6-4-1
suspicious. Do not replace anything.
I: Using r-cran-matrix by changing version to (>= 1.2-6) for Depends:Matrix (>= 1.2-6)
I: Using r-bioc-biobase for Depends:Biobase
I: Using r-cran-ggplot2 for Depends:ggplot2 (>= 1.0.0)
I: Using r-cran-vgam for Depends:VGAM (>= 1.0-6)
I: Using r-cran-ddrtree for Depends:DDRTree (>= 0.1.4)
I: Using r-cran-hmisc for Suggests:Hmisc
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-seurat for Suggests:Seurat
I: Using r-bioc-scater for Suggests:scater
I: Using r-cran-testthat for Suggests:testthat
I: Using r-cran-igraph for Imports:igraph (>= 1.0.1)
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
I: Using r-bioc-hsmmsinglecell for Imports:HSMMSingleCell (>= 0.101.5)
I: Using r-cran-plyr for Imports:plyr
I: Using r-cran-cluster for Imports:cluster
I: Using r-cran-combinat for Imports:combinat
I: Using r-cran-fastica for Imports:fastICA
I: Using r-cran-irlba for Imports:irlba (>= 2.0.0)
I: Using r-cran-matrixstats for Imports:matrixStats
I: Using r-cran-rtsne for Imports:Rtsne
I: Using r-cran-mass for Imports:MASS
I: Using r-cran-reshape2 for Imports:reshape2
I: Using r-cran-leidenbase for Imports:leidenbase (>= 0.1.9)
I: Using r-bioc-limma for Imports:limma
I: Using r-cran-tibble for Imports:tibble
I: Using r-cran-dplyr for Imports:dplyr
I: Using r-cran-qlcmatrix for Imports:qlcMatrix
I: Using r-cran-pheatmap for Imports:pheatmap
I: Using r-cran-stringr for Imports:stringr
I: Using r-cran-proxy for Imports:proxy
I: Using r-cran-slam for Imports:slam
I: Using r-cran-viridis for Imports:viridis
I: Using r-bioc-biocviews for Imports:biocViews
I: Using r-cran-rann for Imports:RANN (>= 2.5)
I: Using r-cran-rcpp for Imports:Rcpp (>= 0.12.0)
I: Using r-cran-rcpp for LinkingTo:Rcpp
I: BioConductor API version: r-api-bioc-3.18
I: Use r-bioc-monocle as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-monocle-dbgsym' in '../r-bioc-monocle-dbgsym_2.30.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-monocle' in '../r-bioc-monocle_2.30.0-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-bioc-monocle_2.30.0-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../r-bioc-monocle_2.30.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-12-16T22:49:27Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-monocle_2.30.0-1_armhf.changes:
--------------------------------------
Format: 1.8
Date: Thu, 30 Nov 2023 10:43:19 +0100
Source: r-bioc-monocle
Binary: r-bioc-monocle r-bioc-monocle-dbgsym
Architecture: armhf
Version: 2.30.0-1
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-monocle - clustering, differential expression, and trajectory analysis for
Changes:
r-bioc-monocle (2.30.0-1) unstable; urgency=medium
.
* New upstream version
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Files:
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51f16bd7fdd348b56465c126c7b99638 11992 gnu-r optional r-bioc-monocle_2.30.0-1_armhf.buildinfo
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: r-bioc-monocle
Binary: r-bioc-monocle r-bioc-monocle-dbgsym
Architecture: armhf
Version: 2.30.0-1
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sat, 16 Dec 2023 22:49:27 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.71-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-14),
autotools-dev (= 20220109.1),
base-files (= 13+rpi1),
base-passwd (= 3.6.2),
bash (= 5.2.15-2),
binutils (= 2.41-6+rpi1),
binutils-arm-linux-gnueabihf (= 2.41-6+rpi1),
binutils-common (= 2.41-6+rpi1),
bsdextrautils (= 2.39.3-2),
bsdutils (= 1:2.39.3-2),
build-essential (= 12.9),
bzip2 (= 1.0.8-5+b2),
ca-certificates (= 20230311),
coreutils (= 9.1-1),
cpp (= 4:13.2.0-1+rpi1),
cpp-12 (= 12.3.0-10+rpi1),
cpp-13 (= 13.2.0-7+rpi1),
dash (= 0.5.12-6),
dctrl-tools (= 2.24-3),
debconf (= 1.5.82),
debhelper (= 13.11.8),
debianutils (= 5.14),
dh-autoreconf (= 20),
dh-r (= 20231201),
dh-strip-nondeterminism (= 1.13.1-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.1+rpi1),
dpkg-dev (= 1.22.1+rpi1),
dwz (= 0.15-1),
file (= 1:5.45-2),
findutils (= 4.9.0-5),
fontconfig (= 2.14.2-6),
fontconfig-config (= 2.14.2-6),
fonts-dejavu-core (= 2.37-8),
fonts-dejavu-mono (= 2.37-8),
g++ (= 4:13.2.0-1+rpi1),
g++-13 (= 13.2.0-7+rpi1),
gcc (= 4:13.2.0-1+rpi1),
gcc-12 (= 12.3.0-10+rpi1),
gcc-12-base (= 12.3.0-10+rpi1),
gcc-13 (= 13.2.0-7+rpi1),
gcc-13-base (= 13.2.0-7+rpi1),
gettext (= 0.21-14),
gettext-base (= 0.21-14),
gfortran (= 4:13.2.0-1+rpi1),
gfortran-13 (= 13.2.0-7+rpi1),
grep (= 3.11-3),
groff-base (= 1.23.0-3),
gzip (= 1.12-1),
hostname (= 3.23+nmu1),
icu-devtools (= 72.1-4),
init-system-helpers (= 1.65.2),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.1-3),
libalgorithm-c3-perl (= 0.11-2),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 13.2.0-7+rpi1),
libatomic1 (= 13.2.0-7+rpi1),
libattr1 (= 1:2.5.1-4),
libaudit-common (= 1:3.1.1-1),
libaudit1 (= 1:3.1.1-1),
libb-hooks-endofscope-perl (= 0.26-1),
libb-hooks-op-check-perl (= 0.22-2+b1),
libbinutils (= 2.41-6+rpi1),
libblas-dev (= 3.11.0-2),
libblas3 (= 3.11.0-2),
libblkid1 (= 2.39.3-2),
libboost1.81-dev (= 1.81.0-7),
libbrotli1 (= 1.1.0-2),
libbsd0 (= 0.11.7-4),
libbz2-1.0 (= 1.0.8-5+b2),
libbz2-dev (= 1.0.8-5+b2),
libc-bin (= 2.37-12+rpi2),
libc-dev-bin (= 2.37-12+rpi2),
libc6 (= 2.37-12+rpi2),
libc6-dev (= 2.37-12+rpi2),
libcairo2 (= 1.18.0-1),
libcap-ng0 (= 0.8.3-1+b1),
libcap2 (= 1:2.66-4),
libcc1-0 (= 13.2.0-7+rpi1),
libclass-c3-perl (= 0.35-2),
libclass-load-perl (= 0.25-2),
libclass-load-xs-perl (= 0.10-2+b1),
libclone-perl (= 0.46-1),
libcom-err2 (= 1.47.0-2),
libcrypt-dev (= 1:4.4.36-2),
libcrypt1 (= 1:4.4.36-2),
libctf-nobfd0 (= 2.41-6+rpi1),
libctf0 (= 2.41-6+rpi1),
libcurl3-gnutls (= 8.4.0-2+rpi1),
libcurl4 (= 8.4.0-2+rpi1),
libdata-optlist-perl (= 0.114-1),
libdatrie1 (= 0.2.13-2+b2),
libdb5.3 (= 5.3.28+dfsg2-2),
libdebconfclient0 (= 0.271),
libdebhelper-perl (= 13.11.8),
libdeflate0 (= 1.18-1),
libdevel-callchecker-perl (= 0.008-2),
libdevel-globaldestruction-perl (= 0.14-4),
libdevel-overloadinfo-perl (= 0.007-1),
libdevel-stacktrace-perl (= 2.0400-2),
libdist-checkconflicts-perl (= 0.11-2),
libdpkg-perl (= 1.22.1+rpi1),
libdynaloader-functions-perl (= 0.003-3),
libelf1 (= 0.188-2.1+rpi1),
libencode-locale-perl (= 1.05-3),
libeval-closure-perl (= 0.14-3),
libexpat1 (= 2.5.0-2),
libffi8 (= 3.4.4-1),
libfile-stripnondeterminism-perl (= 1.13.1-1),
libfile-which-perl (= 1.27-2),
libfontconfig1 (= 2.14.2-6),
libfreetype6 (= 2.13.2+dfsg-1),
libfribidi0 (= 1.0.13-3),
libgcc-12-dev (= 12.3.0-10+rpi1),
libgcc-13-dev (= 13.2.0-7+rpi1),
libgcc-s1 (= 13.2.0-7+rpi1),
libgcrypt20 (= 1.10.2-3),
libgdbm-compat4 (= 1.23-3),
libgdbm6 (= 1.23-3),
libgfortran-13-dev (= 13.2.0-7+rpi1),
libgfortran5 (= 13.2.0-7+rpi1),
libglib2.0-0 (= 2.78.3-1),
libgmp10 (= 2:6.3.0+dfsg-2),
libgnutls30 (= 3.8.1-4),
libgomp1 (= 13.2.0-7+rpi1),
libgpg-error0 (= 1.47-2),
libgraphite2-3 (= 1.3.14-1),
libgssapi-krb5-2 (= 1.20.1-4),
libharfbuzz0b (= 8.0.1-1),
libhogweed6 (= 3.9.1-2),
libhttp-date-perl (= 6.06-1),
libhttp-message-perl (= 6.45-1),
libice6 (= 2:1.0.10-1),
libicu-dev (= 72.1-4),
libicu72 (= 72.1-4),
libidn2-0 (= 2.3.4-1),
libio-html-perl (= 1.004-3),
libisl23 (= 0.26-3),
libjansson4 (= 2.14-2),
libjbig0 (= 2.1-6.1),
libjpeg-dev (= 1:2.1.5-2),
libjpeg62-turbo (= 1:2.1.5-2),
libjpeg62-turbo-dev (= 1:2.1.5-2),
libk5crypto3 (= 1.20.1-4),
libkeyutils1 (= 1.6.3-2),
libkrb5-3 (= 1.20.1-4),
libkrb5support0 (= 1.20.1-4),
liblapack-dev (= 3.11.0-2),
liblapack3 (= 3.11.0-2),
libldap-2.5-0 (= 2.5.13+dfsg-5+rpi1),
liblerc4 (= 4.0.0+ds-4),
liblwp-mediatypes-perl (= 6.04-2),
liblz4-1 (= 1.9.4-1+rpi1+b1),
liblzma-dev (= 5.4.5-0.1),
liblzma5 (= 5.4.5-0.1),
libmagic-mgc (= 1:5.45-2),
libmagic1 (= 1:5.45-2),
libmd0 (= 1.1.0-1),
libmodule-implementation-perl (= 0.09-2),
libmodule-runtime-conflicts-perl (= 0.003-2),
libmodule-runtime-perl (= 0.016-2),
libmoose-perl (= 2.2206-1),
libmount1 (= 2.39.3-2),
libmpc3 (= 1.3.1-1),
libmpfr6 (= 4.2.1-1),
libmro-compat-perl (= 0.15-2),
libnamespace-clean-perl (= 0.27-2),
libncurses-dev (= 6.4+20231121-1),
libncurses6 (= 6.4+20231121-1),
libncursesw6 (= 6.4+20231121-1),
libnettle8 (= 3.9.1-2),
libnghttp2-14 (= 1.58.0-1),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libp11-kit0 (= 0.25.0-5),
libpackage-deprecationmanager-perl (= 0.18-1),
libpackage-stash-perl (= 0.40-1),
libpackage-stash-xs-perl (= 0.30-1+b1),
libpam-modules (= 1.5.2-9.1),
libpam-modules-bin (= 1.5.2-9.1),
libpam-runtime (= 1.5.2-9.1),
libpam0g (= 1.5.2-9.1),
libpango-1.0-0 (= 1.51.0+ds-3),
libpangocairo-1.0-0 (= 1.51.0+ds-3),
libpangoft2-1.0-0 (= 1.51.0+ds-3),
libpaper-utils (= 1.1.29),
libpaper1 (= 1.1.29),
libparams-classify-perl (= 0.015-2+b1),
libparams-util-perl (= 1.102-2+b1),
libpcre2-16-0 (= 10.42-4),
libpcre2-32-0 (= 10.42-4),
libpcre2-8-0 (= 10.42-4),
libpcre2-dev (= 10.42-4),
libpcre2-posix3 (= 10.42-4),
libperl5.36 (= 5.36.0-9),
libpipeline1 (= 1.5.7-1),
libpixman-1-0 (= 0.42.2-1),
libpkgconf3 (= 1.8.1-1),
libpng-dev (= 1.6.40-2),
libpng16-16 (= 1.6.40-2),
libpsl5 (= 0.21.2-1+b1),
libreadline-dev (= 8.2-3),
libreadline8 (= 8.2-3),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.28+dfsg1-3),
libsasl2-modules-db (= 2.1.28+dfsg1-3),
libseccomp2 (= 2.5.4-1+rpi1+b1),
libselinux1 (= 3.5-1),
libsframe1 (= 2.41-6+rpi1),
libsharpyuv0 (= 1.3.2-0.3),
libsm6 (= 2:1.2.3-1),
libsmartcols1 (= 2.39.3-2),
libssh2-1 (= 1.11.0-3),
libssl3 (= 3.0.11-1),
libstdc++-12-dev (= 12.3.0-10+rpi1),
libstdc++-13-dev (= 13.2.0-7+rpi1),
libstdc++6 (= 13.2.0-7+rpi1),
libsub-exporter-perl (= 0.990-1),
libsub-exporter-progressive-perl (= 0.001013-3),
libsub-identify-perl (= 0.14-3),
libsub-install-perl (= 0.929-1),
libsub-name-perl (= 0.27-1),
libsub-override-perl (= 0.10-1),
libswitch-perl (= 2.17-3),
libsystemd0 (= 254.5-1+rpi1),
libtasn1-6 (= 4.19.0-3),
libtcl8.6 (= 8.6.13+dfsg-2),
libthai-data (= 0.1.29-1),
libthai0 (= 0.1.29-1),
libtiff6 (= 4.5.1+git230720-3),
libtimedate-perl (= 2.3300-2),
libtinfo6 (= 6.4+20231121-1),
libtirpc-common (= 1.3.3+ds-1),
libtirpc-dev (= 1.3.3+ds-1),
libtirpc3 (= 1.3.3+ds-1),
libtk8.6 (= 8.6.13-2),
libtool (= 2.4.7-7),
libtry-tiny-perl (= 0.31-2),
libubsan1 (= 13.2.0-7+rpi1),
libuchardet0 (= 0.0.8-1),
libudev1 (= 254.5-1+rpi1),
libunistring5 (= 1.1-2),
liburi-perl (= 5.21-1),
libuuid1 (= 2.39.3-2),
libvariable-magic-perl (= 0.63-1+b1),
libwebp7 (= 1.3.2-0.3),
libwww-curl-perl (= 4.17-10),
libwww-curl-simple-perl (= 0.100191-3),
libx11-6 (= 2:1.8.7-1),
libx11-data (= 2:1.8.7-1),
libxau6 (= 1:1.0.9-1),
libxcb-render0 (= 1.15-1),
libxcb-shm0 (= 1.15-1),
libxcb1 (= 1.15-1),
libxdmcp6 (= 1:1.1.2-3),
libxext6 (= 2:1.3.4-1),
libxft2 (= 2.3.6-1),
libxml2 (= 2.9.14+dfsg-1.3),
libxmuu1 (= 2:1.1.3-3),
libxrender1 (= 1:0.9.10-1.1),
libxss1 (= 1:1.2.3-1),
libxt6 (= 1:1.2.1-1.1),
libzstd1 (= 1.5.5+dfsg2-2),
linux-libc-dev (= 6.5.6-1+rpi1),
littler (= 0.3.18-2),
login (= 1:4.13+dfsg1-3),
lsb-base (= 11.6+rpi1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.12.0-1),
mawk (= 1.3.4.20230808-1),
ncurses-base (= 6.4+20231121-1),
ncurses-bin (= 6.4+20231121-1),
openssl (= 3.0.11-1),
patch (= 2.7.6-7),
perl (= 5.36.0-9),
perl-base (= 5.36.0-9),
perl-modules-5.36 (= 5.36.0-9),
pkg-config (= 1.8.1-1),
pkgconf (= 1.8.1-1),
pkgconf-bin (= 1.8.1-1),
po-debconf (= 1.0.21+nmu1),
r-base-core (= 4.3.2-1),
r-base-dev (= 4.3.2-1),
r-bioc-biobase (= 2.62.0-1),
r-bioc-biocgenerics (= 0.48.1-2),
r-bioc-biocviews (= 1.70.0-1),
r-bioc-graph (= 1.80.0-1),
r-bioc-hsmmsinglecell (= 1.22.0-1),
r-bioc-limma (= 3.58.1+dfsg-1),
r-bioc-rbgl (= 1.78.0+dfsg-1),
r-cran-bh (= 1.81.0-1),
r-cran-biocmanager (= 1.30.22+dfsg-2),
r-cran-bitops (= 1.0-7-1),
r-cran-cli (= 3.6.1-1),
r-cran-cluster (= 2.1.6-1),
r-cran-colorspace (= 2.1-0+dfsg-1),
r-cran-combinat (= 0.0-8-7),
r-cran-cpp11 (= 0.4.6-1),
r-cran-ddrtree (= 0.1.5-2),
r-cran-docopt (= 0.7.1-2),
r-cran-dplyr (= 1.1.4-1),
r-cran-fansi (= 1.0.5-1),
r-cran-farver (= 2.1.1-1),
r-cran-fastica (= 1.2-4-1),
r-cran-generics (= 0.1.3-1),
r-cran-ggplot2 (= 3.4.4+dfsg-1),
r-cran-glue (= 1.6.2-1),
r-cran-gridextra (= 2.3-3),
r-cran-gtable (= 0.3.4+dfsg-1),
r-cran-igraph (= 1.5.1-1),
r-cran-irlba (= 2.3.5.1-2),
r-cran-isoband (= 0.2.7-1),
r-cran-labeling (= 0.4.3-1),
r-cran-lattice (= 0.22-5-1),
r-cran-leidenbase (= 0.1.25-2),
r-cran-lifecycle (= 1.0.4+dfsg-1),
r-cran-littler (= 0.3.18-2),
r-cran-magrittr (= 2.0.3-1),
r-cran-mass (= 7.3-60-2),
r-cran-matrix (= 1.6-4-1),
r-cran-matrixstats (= 1.1.0-1),
r-cran-mgcv (= 1.9-0-1),
r-cran-munsell (= 0.5.0-2),
r-cran-nlme (= 3.1.164-1),
r-cran-pheatmap (= 1.0.12-2),
r-cran-pillar (= 1.9.0+dfsg-1),
r-cran-pkgconfig (= 2.0.3-2),
r-cran-pkgkitten (= 0.2.3-1),
r-cran-plyr (= 1.8.9-1),
r-cran-proxy (= 0.4-27-1),
r-cran-qlcmatrix (= 0.9.7-2),
r-cran-r6 (= 2.5.1-1),
r-cran-rann (= 2.6.1-1+b1),
r-cran-rcolorbrewer (= 1.1-3-1),
r-cran-rcpp (= 1.0.11-1),
r-cran-rcppeigen (= 0.3.3.9.4-1),
r-cran-rcurl (= 1.98-1.13+dfsg-1),
r-cran-reshape2 (= 1.4.4-2),
r-cran-rlang (= 1.1.2-1),
r-cran-rtsne (= 0.16-1),
r-cran-runit (= 0.4.32-3),
r-cran-scales (= 1.2.1-1),
r-cran-slam (= 0.1-50-1),
r-cran-sparsesvd (= 0.2-2-1),
r-cran-statmod (= 1.5.0-1),
r-cran-stringi (= 1.8.2-1),
r-cran-stringr (= 1.5.1-1),
r-cran-tibble (= 3.2.1+dfsg-2),
r-cran-tidyselect (= 1.2.0+dfsg-1),
r-cran-utf8 (= 1.2.4-1),
r-cran-vctrs (= 0.6.4-1),
r-cran-vgam (= 1.1-9-1),
r-cran-viridis (= 0.6.4-1),
r-cran-viridislite (= 0.4.2-2),
r-cran-withr (= 2.5.0-1),
r-cran-xml (= 3.99-0.16-1),
readline-common (= 8.2-3),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-1),
sensible-utils (= 0.0.20),
sysvinit-utils (= 3.08-3),
tar (= 1.34+dfsg-1.2),
tzdata (= 2023c-10),
ucf (= 3.0043+nmu1),
unzip (= 6.0-28),
usr-is-merged (= 37),
util-linux (= 2.39.3-2),
x11-common (= 1:7.7+23),
xauth (= 1:1.1.2-1),
xdg-utils (= 1.1.3-4.1),
xz-utils (= 5.4.5-0.1),
zip (= 3.0-13),
zlib1g (= 1:1.2.13.dfsg-3),
zlib1g-dev (= 1:1.2.13.dfsg-3)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
LC_COLLATE="C.UTF-8"
SOURCE_DATE_EPOCH="1701337399"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-monocle-dbgsym_2.30.0-1_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 67768 bytes: control archive=540 bytes.
393 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-monocle-dbgsym
Source: r-bioc-monocle
Version: 2.30.0-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 94
Depends: r-bioc-monocle (= 2.30.0-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-monocle
Build-Ids: 3973e811f91c5d38232fa72a1a47a5f11b7ab1df
drwxr-xr-x root/root 0 2023-11-30 09:43 ./
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lrwxrwxrwx root/root 0 2023-11-30 09:43 ./usr/share/doc/r-bioc-monocle-dbgsym -> r-bioc-monocle
r-bioc-monocle_2.30.0-1_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 1422256 bytes: control archive=2692 bytes.
1606 bytes, 18 lines control
4919 bytes, 57 lines md5sums
Package: r-bioc-monocle
Version: 2.30.0-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 1648
Depends: r-api-4.0, r-api-bioc-3.18, r-cran-matrix (>= 1.2-6), r-bioc-biobase, r-cran-ggplot2 (>= 1.0.0), r-cran-vgam (>= 1.0-6), r-cran-ddrtree (>= 0.1.4), r-cran-igraph (>= 1.0.1), r-bioc-biocgenerics, r-bioc-hsmmsinglecell (>= 0.101.5), r-cran-plyr, r-cran-cluster, r-cran-combinat, r-cran-fastica, r-cran-irlba (>= 2.0.0), r-cran-matrixstats, r-cran-rtsne, r-cran-mass, r-cran-reshape2, r-cran-leidenbase (>= 0.1.9), r-bioc-limma, r-cran-tibble, r-cran-dplyr, r-cran-qlcmatrix, r-cran-pheatmap, r-cran-stringr, r-cran-proxy, r-cran-slam, r-cran-viridis, r-bioc-biocviews, r-cran-rann (>= 2.5), r-cran-rcpp (>= 0.12.0), libc6 (>= 2.11), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1)
Suggests: r-cran-hmisc, r-cran-knitr, r-cran-seurat, r-bioc-scater, r-cran-testthat
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/monocle/
Description: clustering, differential expression, and trajectory analysis for RNA-Seq
Monocle performs differential expression and time-series analysis
for single-cell expression experiments. It orders individual cells
according to progress through a biological process, without knowing ahead
of time which genes define progress through that process. Monocle also
performs differential expression analysis, clustering, visualization, and
other useful tasks on single cell expression data. It is designed to work
with RNA-Seq and qPCR data, but could be used with other types as well.
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-rw-r--r-- root/root 68663 2023-11-30 09:43 ./usr/lib/R/site-library/monocle/doc/monocle-vignette.pdf
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-rw-r--r-- root/root 9846 2023-11-30 09:43 ./usr/share/doc/r-bioc-monocle/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 14408
Build-Time: 33
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 210
Job: r-bioc-monocle_2.30.0-1
Machine Architecture: arm64
Package: r-bioc-monocle
Package-Time: 253
Source-Version: 2.30.0-1
Space: 14408
Status: successful
Version: 2.30.0-1
--------------------------------------------------------------------------------
Finished at 2023-12-16T22:49:27Z
Build needed 00:04:13, 14408k disk space