r-bioc-monocle →
2.22.0-2 →
armhf → 2022-05-24 16:57:40
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| r-bioc-monocle 2.22.0-2 (armhf) Tue, 24 May 2022 16:37:01 +0000 |
+==============================================================================+
Package: r-bioc-monocle
Version: 2.22.0-2
Source Version: 2.22.0-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-48941f16-907b-4a32-b258-bd13bec250f8' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.0 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.9 MB]
Fetched 26.9 MB in 10s (2655 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-monocle' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-monocle.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-monocle.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 9506 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-bioc-monocle 2.22.0-2 (dsc) [2589 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-bioc-monocle 2.22.0-2 (tar) [9497 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-bioc-monocle 2.22.0-2 (diff) [6244 B]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-monocle-ju0Gwj/r-bioc-monocle-2.22.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-monocle-ju0Gwj' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-4EbJKe/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-4EbJKe/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-4EbJKe/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4EbJKe/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4EbJKe/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4EbJKe/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-4EbJKe/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-4EbJKe/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (5857 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 53 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-4EbJKe/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (72.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12621 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-matrix, r-bioc-biobase, r-cran-ggplot2, r-cran-vgam, r-cran-ddrtree, r-cran-igraph, r-bioc-biocgenerics, r-bioc-hsmmsinglecell, r-cran-plyr, r-cran-cluster, r-cran-combinat, r-cran-fastica, r-cran-irlba, r-cran-matrixstats, r-cran-densityclust, r-cran-rtsne, r-cran-mass, r-cran-reshape2, r-bioc-limma, r-cran-tibble, r-cran-dplyr, r-cran-qlcmatrix, r-cran-pheatmap, r-cran-stringr, r-cran-proxy, r-cran-slam, r-cran-viridis, r-bioc-biocviews, r-cran-rann, r-cran-rcpp
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-matrix, r-bioc-biobase, r-cran-ggplot2, r-cran-vgam, r-cran-ddrtree, r-cran-igraph, r-bioc-biocgenerics, r-bioc-hsmmsinglecell, r-cran-plyr, r-cran-cluster, r-cran-combinat, r-cran-fastica, r-cran-irlba, r-cran-matrixstats, r-cran-densityclust, r-cran-rtsne, r-cran-mass, r-cran-reshape2, r-bioc-limma, r-cran-tibble, r-cran-dplyr, r-cran-qlcmatrix, r-cran-pheatmap, r-cran-stringr, r-cran-proxy, r-cran-slam, r-cran-viridis, r-bioc-biocviews, r-cran-rann, r-cran-rcpp
dpkg-deb: building package 'sbuild-build-depends-r-bioc-monocle-dummy' in '/<<BUILDDIR>>/resolver-4EbJKe/apt_archive/sbuild-build-depends-r-bioc-monocle-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-monocle-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4EbJKe/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4EbJKe/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4EbJKe/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-4EbJKe/apt_archive ./ Sources [689 B]
Get:5 copy:/<<BUILDDIR>>/resolver-4EbJKe/apt_archive ./ Packages [767 B]
Fetched 2789 B in 0s (13.1 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-monocle build dependencies (apt-based resolver)
--------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
cpp-11 dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core g++-11 gcc-11
gcc-11-base gcc-12-base gettext gettext-base gfortran gfortran-11 groff-base
icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl
libasan6 libatomic1 libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libcc1-0 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-11-dev
libgcc-s1 libgfortran-11-dev libgfortran5 libglib2.0-0 libgomp1
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu71 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libncursesw6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-8-0 libpcre2-dev libpcre2-posix3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16
libpsl5 libreadline-dev librtmp1 libscalar-list-utils-perl libsigsegv2
libsm6 libssh2-1 libstdc++-11-dev libstdc++6 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtinfo6 libtk8.6 libtool
libtry-tiny-perl libubsan1 libuchardet0 liburi-perl libvariable-magic-perl
libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db openssl
pkg-config po-debconf r-base-core r-base-dev r-bioc-biobase
r-bioc-biocgenerics r-bioc-biocviews r-bioc-graph r-bioc-hsmmsinglecell
r-bioc-limma r-bioc-rbgl r-cran-bh r-cran-biocmanager r-cran-bitops
r-cran-cli r-cran-cluster r-cran-colorspace r-cran-combinat r-cran-crayon
r-cran-ddrtree r-cran-densityclust r-cran-digest r-cran-docopt r-cran-dplyr
r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-fastica r-cran-fnn
r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-glue r-cran-gridextra
r-cran-gtable r-cran-igraph r-cran-irlba r-cran-isoband r-cran-labeling
r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme
r-cran-pheatmap r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr
r-cran-proxy r-cran-purrr r-cran-qlcmatrix r-cran-r6 r-cran-rann
r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl
r-cran-reshape2 r-cran-rlang r-cran-rtsne r-cran-runit r-cran-scales
r-cran-slam r-cran-sparsesvd r-cran-stringi r-cran-stringr r-cran-tibble
r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridis
r-cran-viridislite r-cran-withr r-cran-xml sgml-base ucf unzip x11-common
xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-11-locales debtags dh-make
postgresql-client-common gcc-11-doc gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-11-doc libcoarrays-dev groff
liblapack-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev
libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev
libboost-contract1.74-dev libboost-coroutine1.74-dev
libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-program-options1.74-dev libboost-python1.74-dev
libboost-random1.74-dev libboost-regex1.74-dev
libboost-serialization1.74-dev libboost-stacktrace1.74-dev
libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc
libstdc++-11-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl
libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser
libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-all
r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray
r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy
r-bioc-deseq2 r-bioc-annotate r-cran-knitr r-cran-commonmark r-cran-sparsem
r-cran-biasedurn r-cran-ellipse r-bioc-go.db r-cran-gplots r-cran-locfit
r-bioc-org.hs.eg.db r-cran-statmod r-cran-remotes r-cran-rmarkdown
r-cran-curl r-cran-callr r-cran-covr r-cran-htmltools r-cran-htmlwidgets
r-cran-processx r-cran-ps r-cran-rstudioapi r-cran-shiny r-cran-whoami
r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs
r-cran-png r-cran-jpeg r-cran-unitizer r-cran-devtools r-cran-ggbeeswarm
r-cran-readr r-cran-dbi r-cran-forcats r-cran-r.utils r-cran-rsqlite
r-cran-waldo r-cran-ape r-cran-rgl r-cran-magick r-cran-sf r-cran-tidyverse
r-cran-getopt r-cran-base64enc r-cran-markdown r-cran-r.devices r-cran-r.rsp
r-cran-bit64 r-cran-formattable r-cran-nanotime r-cran-palmerpenguins
r-cran-survival r-cran-units r-cran-vdiffr r-cran-testthat r-cran-doparallel
r-cran-foreach r-cran-iterators r-cran-itertools r-cran-inline r-cran-fs
r-cran-usethis r-cran-dichromat r-cran-bench r-cran-blob r-cran-brio
r-cran-evaluate r-cran-hms r-cran-pkgbuild r-cran-pkgload r-cran-tidyr
r-cran-zeallot sgml-base-doc
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-testthat
r-bioc-biocversion r-cran-mockery r-cran-bench r-cran-broom r-cran-callr
r-cran-covr r-cran-dbi r-cran-dbplyr r-cran-knitr r-cran-lobstr
r-cran-rmarkdown r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite
r-cran-tidyr r-cran-pkgload r-cran-ragg r-cran-hexbin r-cran-hmisc
r-cran-interp r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp
r-cran-quantreg r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr
r-cran-xml2 r-cran-lubridate r-cran-domc r-cran-abind r-cran-cba
r-cran-bit64 r-cran-hms r-cran-htmltools r-cran-htmlwidgets
r-cran-data.table r-cran-mockr r-cran-waldo libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu71
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libscalar-list-utils-perl libsigsegv2 libsm6
libssh2-1 libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5
libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl
libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4
man-db openssl pkg-config po-debconf r-base-core r-base-dev r-bioc-biobase
r-bioc-biocgenerics r-bioc-biocviews r-bioc-graph r-bioc-hsmmsinglecell
r-bioc-limma r-bioc-rbgl r-cran-bh r-cran-biocmanager r-cran-bitops
r-cran-cli r-cran-cluster r-cran-colorspace r-cran-combinat r-cran-crayon
r-cran-ddrtree r-cran-densityclust r-cran-digest r-cran-docopt r-cran-dplyr
r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-fastica r-cran-fnn
r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-glue r-cran-gridextra
r-cran-gtable r-cran-igraph r-cran-irlba r-cran-isoband r-cran-labeling
r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme
r-cran-pheatmap r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr
r-cran-proxy r-cran-purrr r-cran-qlcmatrix r-cran-r6 r-cran-rann
r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl
r-cran-reshape2 r-cran-rlang r-cran-rtsne r-cran-runit r-cran-scales
r-cran-slam r-cran-sparsesvd r-cran-stringi r-cran-stringr r-cran-tibble
r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridis
r-cran-viridislite r-cran-withr r-cran-xml
sbuild-build-depends-r-bioc-monocle-dummy sgml-base ucf unzip x11-common
xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp-11 g++-11 gcc-11 gcc-11-base gcc-12-base libasan6 libatomic1 libcc1-0
libgcc-11-dev libgcc-s1 libgomp1 libncursesw6 libpcre2-8-0 libstdc++-11-dev
libstdc++6 libtinfo6 libubsan1
17 upgraded, 249 newly installed, 0 to remove and 36 not upgraded.
Need to get 218 MB of archives.
After this operation, 530 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-4EbJKe/apt_archive ./ sbuild-build-depends-r-bioc-monocle-dummy 0.invalid.0 [1060 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf sgml-base all 1.30 [15.1 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 12.1.0-2+rpi1 [8196 B]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 12.1.0-2+rpi1 [860 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12.1.0-2+rpi1 [207 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12.1.0-2+rpi1 [504 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 12.1.0-2+rpi1 [95.4 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 12.1.0-2+rpi1 [32.1 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 12.1.0-2+rpi1 [36.1 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libtinfo6 armhf 6.3+20220423-2 [337 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libncursesw6 armhf 6.3+20220423-2 [104 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-8-0 armhf 10.40-1 [221 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38-4 [137 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-1 [33.7 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-1 [1362 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 1.1.1o-1 [817 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-6 [171 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-6 [510 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libasan6 armhf 11.3.0-1+rpi1 [1946 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf g++-11 armhf 11.3.0-1+rpi1 [7923 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf gcc-11 armhf 11.3.0-1+rpi1 [14.0 MB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-11-dev armhf 11.3.0-1+rpi1 [1969 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libgcc-11-dev armhf 11.3.0-1+rpi1 [698 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf cpp-11 armhf 11.3.0-1+rpi1 [7080 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf gcc-11-base armhf 11.3.0-1+rpi1 [209 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.7.1 [195 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-1 [175 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-6 [1214 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.7.1 [1071 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-26 [151 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-1 [108 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.8-1 [84.1 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-5 [272 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-2 [352 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.4 [281 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.4 [331 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.6-1 [109 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.5-1 [308 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.5-1 [706 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.47.0-1 [65.0 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3 [161 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.83.0-1 [316 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.72.1-1 [1231 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.1.0-2+rpi1 [238 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-1 [1587 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.4 [416 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1+b1 [1420 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.7+ds-1 [214 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.7+ds-1 [70.1 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.7+ds-1 [60.1 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.10-2 [55.4 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-8 [273 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.4-1 [50.2 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.2.0-1 [27.7 MB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-11-dev armhf 11.3.0-1+rpi1 [280 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf gfortran-11 armhf 11.3.0-1+rpi1 [7580 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:11.2.0-2+rpi1 [1428 B]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-1 [114 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.1-1 [2846 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3+20220423-2 [289 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3+20220423-2 [940 B]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.1.2-1.2 [120 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.40-1 [208 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.40-1 [199 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.40-1 [53.4 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.40-1 [637 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-14 [239 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-14 [232 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-14 [150 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-14 [569 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4 [183 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-5 [272 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5 [26.8 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2.1 [218 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 71.1-3 [177 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 71.1-3 [9799 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1.1-1 [36.9 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.2.0-1 [4488 B]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.27-1 [17.3 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-2.1 [20.0 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.10-1 [91.0 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.36-1 [80.6 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-1+b2 [24.5 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b5 [10.9 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b3 [15.7 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-1+b4 [24.6 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-1 [24.2 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf libscalar-list-utils-perl armhf 1:1.62-1 [61.6 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b5 [14.2 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.15-1 [12.6 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-1+b2 [13.2 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b3 [18.4 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2200-1+b1 [802 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.62-1+b4 [43.1 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-1+b4 [11.6 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.83.0-1 [313 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-7+b2 [60.5 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-14+b2 [9533 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b4 [4824 B]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf r-cran-littler armhf 0.3.15-1 [92.5 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf littler all 0.3.15-1 [16.9 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.42.0-1 [589 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biobase armhf 2.56.0-1 [2094 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-graph armhf 1.74.0-1 [1243 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bh all 1.74.0-2 [5524 B]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rbgl armhf 1.72.0+dfsg-1 [722 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf r-cran-xml armhf 3.99-0.9-1 [1706 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcurl armhf 1.98-1.6-1 [795 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf r-cran-runit all 0.4.32-3 [294 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf r-cran-biocmanager all 1.30.17+dfsg-1 [121 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocviews all 1.64.0-1 [583 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-hsmmsinglecell all 1.16.0-1 [16.8 MB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-limma armhf 3.52.0+dfsg-1 [1751 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cli armhf 3.3.0-1 [1114 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cluster armhf 2.1.3-1 [553 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf r-cran-colorspace armhf 2.0-3+dfsg-1 [1697 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf r-cran-combinat all 0.0-8-7 [42.8 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf r-cran-crayon all 1.5.1-1 [162 kB]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-45-3 [1176 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.4-1-1 [4290 kB]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf r-cran-irlba armhf 2.3.5-1 [293 kB]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get:214 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcpp armhf 1.0.8.3-1 [2072 kB]
Get:215 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcppeigen armhf 0.3.3.9.2-1 [1167 kB]
Get:216 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ddrtree armhf 0.1.5-2 [123 kB]
Get:217 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fnn armhf 1.1.3-2 [114 kB]
Get:218 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rtsne armhf 0.16-1 [90.1 kB]
Get:219 http://172.17.4.1/private bookworm-staging/main armhf r-cran-digest armhf 0.6.29-1 [183 kB]
Get:220 http://172.17.4.1/private bookworm-staging/main armhf r-cran-gtable all 0.3.0+dfsg-2 [163 kB]
Get:221 http://172.17.4.1/private bookworm-staging/main armhf r-cran-isoband armhf 0.2.5-1 [1756 kB]
Get:222 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mass armhf 7.3-57-1 [1113 kB]
Get:223 http://172.17.4.1/private bookworm-staging/main armhf r-cran-nlme armhf 3.1.157-1 [2258 kB]
Get:224 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mgcv armhf 1.8-40-1 [2993 kB]
Get:225 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rlang armhf 1.0.2-1 [1577 kB]
Get:226 http://172.17.4.1/private bookworm-staging/main armhf r-cran-farver armhf 2.1.0-1 [1394 kB]
Get:227 http://172.17.4.1/private bookworm-staging/main armhf r-cran-labeling all 0.4.2-1 [62.7 kB]
Get:228 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lifecycle all 1.0.1-1 [103 kB]
Get:229 http://172.17.4.1/private bookworm-staging/main armhf r-cran-munsell all 0.5.0-2 [236 kB]
Get:230 http://172.17.4.1/private bookworm-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:231 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB]
Get:232 http://172.17.4.1/private bookworm-staging/main armhf r-cran-viridislite all 0.4.0-2 [1298 kB]
Get:233 http://172.17.4.1/private bookworm-staging/main armhf r-cran-scales all 1.1.1-1 [557 kB]
Get:234 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ellipsis armhf 0.3.2-2 [35.1 kB]
Get:235 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fansi armhf 1.0.3-1 [611 kB]
Get:236 http://172.17.4.1/private bookworm-staging/main armhf r-cran-magrittr armhf 2.0.3-1 [200 kB]
Get:237 http://172.17.4.1/private bookworm-staging/main armhf r-cran-utf8 armhf 1.2.2-1 [129 kB]
Get:238 http://172.17.4.1/private bookworm-staging/main armhf r-cran-vctrs armhf 0.4.1-2 [1241 kB]
Get:239 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pillar all 1.7.0+dfsg-1 [440 kB]
Get:240 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:241 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tibble armhf 3.1.6+dfsg-1 [460 kB]
Get:242 http://172.17.4.1/private bookworm-staging/main armhf r-cran-withr all 2.5.0-1 [236 kB]
Get:243 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ggplot2 all 3.3.6+dfsg-1 [3213 kB]
Get:244 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ggrepel armhf 0.9.1-1 [369 kB]
Get:245 http://172.17.4.1/private bookworm-staging/main armhf r-cran-gridextra all 2.3-3 [1024 kB]
Get:246 http://172.17.4.1/private bookworm-staging/main armhf r-cran-densityclust armhf 0.3.2-1 [92.9 kB]
Get:247 http://172.17.4.1/private bookworm-staging/main armhf r-cran-docopt all 0.7.1-2 [249 kB]
Get:248 http://172.17.4.1/private bookworm-staging/main armhf r-cran-generics all 0.1.2-1 [80.2 kB]
Get:249 http://172.17.4.1/private bookworm-staging/main armhf r-cran-purrr armhf 0.3.4-1+b1 [402 kB]
Get:250 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tidyselect armhf 1.1.2+dfsg-1 [196 kB]
Get:251 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dplyr armhf 1.0.9-1 [1219 kB]
Get:252 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fastica armhf 1.2-3-1 [39.9 kB]
Get:253 http://172.17.4.1/private bookworm-staging/main armhf r-cran-igraph armhf 1.2.11-1 [3220 kB]
Get:254 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrixstats armhf 0.62.0-1 [449 kB]
Get:255 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pheatmap all 1.0.12-2 [77.9 kB]
Get:256 http://172.17.4.1/private bookworm-staging/main armhf r-cran-plyr armhf 1.8.7-1 [833 kB]
Get:257 http://172.17.4.1/private bookworm-staging/main armhf r-cran-proxy armhf 0.4-26-1 [222 kB]
Get:258 http://172.17.4.1/private bookworm-staging/main armhf r-cran-slam armhf 0.1-50-1 [181 kB]
Get:259 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sparsesvd armhf 0.2-2 [37.9 kB]
Get:260 http://172.17.4.1/private bookworm-staging/main armhf r-cran-qlcmatrix all 0.9.7-2 [3297 kB]
Get:261 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rann armhf 2.6.1-1+b1 [38.3 kB]
Get:262 http://172.17.4.1/private bookworm-staging/main armhf r-cran-stringi armhf 1.7.6-1+b1 [774 kB]
Get:263 http://172.17.4.1/private bookworm-staging/main armhf r-cran-stringr all 1.4.0-2 [199 kB]
Get:264 http://172.17.4.1/private bookworm-staging/main armhf r-cran-reshape2 armhf 1.4.4-2 [110 kB]
Get:265 http://172.17.4.1/private bookworm-staging/main armhf r-cran-vgam armhf 1.1-6-1 [7198 kB]
Get:266 http://172.17.4.1/private bookworm-staging/main armhf r-cran-viridis all 0.6.2-1 [2976 kB]
debconf: delaying package configuration, since apt-utils is not installed
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invoke-rc.d: could not determine current runlevel
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Setting up libssh2-1:armhf (1.10.0-3) ...
Setting up sgml-base (1.30) ...
Setting up libdevel-stacktrace-perl (2.0400-1) ...
Setting up libtiff5:armhf (4.3.0-8) ...
Setting up openssl (1.1.1o-1) ...
Setting up libbsd0:armhf (0.11.6-1) ...
Setting up libelf1:armhf (0.187-1) ...
Setting up libicu-dev:armhf (71.1-3) ...
Setting up libxml2:armhf (2.9.14+dfsg-1) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libcc1-0:armhf (12.1.0-2+rpi1) ...
Setting up liburi-perl (5.10-1) ...
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-5) ...
Setting up libfile-stripnondeterminism-perl (1.13.0-1) ...
Setting up cpp-11 (11.3.0-1+rpi1) ...
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libncurses-dev:armhf (6.3+20220423-2) ...
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-6) ...
Setting up libpcre2-dev:armhf (10.40-1) ...
Setting up libtool (2.4.7-4) ...
Setting up libxcb-render0:armhf (1.14-3) ...
Setting up libpcre3-dev:armhf (2:8.39-14) ...
Setting up libgfortran-11-dev:armhf (11.3.0-1+rpi1) ...
Setting up fontconfig-config (2.13.1-4.4) ...
Setting up libpng-dev:armhf (1.6.37-5) ...
Setting up libjpeg-dev:armhf (1:2.1.2-1) ...
Setting up m4 (1.4.18-5) ...
Setting up libcurl3-gnutls:armhf (7.83.0-1) ...
Setting up libxcb-shm0:armhf (1.14-3) ...
Setting up libpaper-utils (1.1.28) ...
Setting up libclass-c3-perl (0.35-1) ...
Setting up libreadline-dev:armhf (8.1.2-1.2) ...
Setting up libdevel-callchecker-perl (0.008-1+b3) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
Setting up libblas3:armhf (3.10.1-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libfreetype6:armhf (2.12.1+dfsg-2) ...
Setting up libdata-optlist-perl (0.112-1) ...
Setting up autoconf (2.71-2) ...
Setting up libstdc++-11-dev:armhf (11.3.0-1+rpi1) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up dwz (0.14-1) ...
Setting up gcc-11 (11.3.0-1+rpi1) ...
Setting up groff-base (1.22.4-8) ...
Setting up libncurses5-dev:armhf (6.3+20220423-2) ...
Setting up libcurl4:armhf (7.83.0-1) ...
Setting up libx11-6:armhf (2:1.7.5-1) ...
Setting up libharfbuzz0b:armhf (2.7.4-1+b1) ...
Setting up libfontconfig1:armhf (2.13.1-4.4) ...
Setting up libmro-compat-perl (0.15-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libblas-dev:armhf (3.10.1-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up libsub-exporter-perl (0.988-1) ...
Setting up libhttp-message-perl (6.36-1) ...
Setting up libeval-closure-perl (0.14-1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up fontconfig (2.13.1-4.4) ...
Regenerating fonts cache... done.
Setting up liblapack3:armhf (3.10.1-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libboost1.74-dev:armhf (1.74.0-14+b2) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up g++-11 (11.3.0-1+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl (0.015-1+b4) ...
Setting up libpango-1.0-0:armhf (1.50.7+ds-1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl (4.17-7+b2) ...
Setting up man-db (2.10.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up dh-autoreconf (20) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up liblapack-dev:armhf (3.10.1-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdist-checkconflicts-perl (0.11-1.1) ...
Setting up libxt6:armhf (1:1.2.1-1) ...
Setting up gfortran-11 (11.3.0-1+rpi1) ...
Setting up xauth (1:1.1.1-1) ...
Setting up libboost-dev:armhf (1.74.0.3+b4) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libpangoft2-1.0-0:armhf (1.50.7+ds-1) ...
Setting up libpangocairo-1.0-0:armhf (1.50.7+ds-1) ...
Setting up r-cran-bh (1.74.0-2) ...
Setting up libxft2:armhf (2.3.4-1) ...
Setting up libmodule-implementation-perl (0.09-1.1) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libtk8.6:armhf (8.6.12-1) ...
Setting up debhelper (13.7.1) ...
Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ...
Setting up gfortran (4:11.2.0-2+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libclass-load-perl (0.25-1) ...
Setting up r-base-core (4.2.0-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.1-1) ...
Setting up r-cran-gtable (0.3.0+dfsg-2) ...
Setting up r-cran-labeling (0.4.2-1) ...
Setting up r-cran-lattice (0.20-45-3) ...
Setting up r-cran-nlme (3.1.157-1) ...
Setting up r-cran-farver (2.1.0-1) ...
Setting up r-cran-xml (3.99-0.9-1) ...
Setting up libpackage-deprecationmanager-perl (0.17-1.1) ...
Setting up r-cran-viridislite (0.4.0-2) ...
Setting up r-cran-cluster (2.1.3-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-1+b5) ...
Setting up r-cran-proxy (0.4-26-1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.2-2) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-cran-littler (0.3.15-1) ...
Setting up r-cran-rcpp (1.0.8.3-1) ...
Setting up r-cran-combinat (0.0-8-7) ...
Setting up r-bioc-biocgenerics (0.42.0-1) ...
Setting up r-cran-rlang (1.0.2-1) ...
Setting up r-cran-matrixstats (0.62.0-1) ...
Setting up r-base-dev (4.2.0-1) ...
Setting up littler (0.3.15-1) ...
Setting up r-cran-vgam (1.1-6-1) ...
Setting up r-cran-withr (2.5.0-1) ...
Setting up r-cran-slam (0.1-50-1) ...
Setting up libmoose-perl:armhf (2.2200-1+b1) ...
Setting up r-cran-generics (0.1.2-1) ...
Setting up r-cran-digest (0.6.29-1) ...
Setting up r-cran-rann (2.6.1-1+b1) ...
Setting up r-cran-docopt (0.7.1-2) ...
Setting up r-cran-fansi (1.0.3-1) ...
Setting up r-cran-fastica (1.2-3-1) ...
Setting up r-cran-mass (7.3-57-1) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-cli (3.3.0-1) ...
Setting up r-cran-lifecycle (1.0.1-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-cran-fnn (1.1.3-2) ...
Setting up r-cran-biocmanager (1.30.17+dfsg-1) ...
Setting up r-bioc-biobase (2.56.0-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.2-1) ...
Setting up r-cran-colorspace (2.0-3+dfsg-1) ...
Setting up r-cran-stringi (1.7.6-1+b1) ...
Setting up r-cran-plyr (1.8.7-1) ...
Setting up r-cran-rcolorbrewer (1.1-3-1) ...
Setting up r-cran-isoband (0.2.5-1) ...
Setting up r-cran-runit (0.4.32-3) ...
Setting up r-cran-gridextra (2.3-3) ...
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up r-bioc-limma (3.52.0+dfsg-1) ...
Setting up r-cran-purrr (0.3.4-1+b1) ...
Setting up r-cran-matrix (1.4-1-1) ...
Setting up r-cran-irlba (2.3.5-1) ...
Setting up r-cran-mgcv (1.8-40-1) ...
Setting up r-cran-rtsne (0.16-1) ...
Setting up r-cran-rcurl (1.98-1.6-1) ...
Setting up r-cran-vctrs (0.4.1-2) ...
Setting up r-cran-rcppeigen (0.3.3.9.2-1) ...
Setting up r-bioc-graph (1.74.0-1) ...
Setting up r-cran-ellipsis (0.3.2-2) ...
Setting up r-bioc-rbgl (1.72.0+dfsg-1) ...
Setting up r-bioc-biocviews (1.64.0-1) ...
Setting up r-bioc-hsmmsinglecell (1.16.0-1) ...
Setting up r-cran-stringr (1.4.0-2) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up r-cran-munsell (0.5.0-2) ...
Setting up r-cran-igraph (1.2.11-1) ...
Setting up r-cran-sparsesvd (0.2-2) ...
Setting up r-cran-tidyselect (1.1.2+dfsg-1) ...
Setting up r-cran-reshape2 (1.4.4-2) ...
Setting up r-cran-ddrtree (0.1.5-2) ...
Setting up r-cran-scales (1.1.1-1) ...
Setting up dh-r (20210816) ...
Setting up r-cran-pillar (1.7.0+dfsg-1) ...
Setting up r-cran-pheatmap (1.0.12-2) ...
Setting up r-cran-tibble (3.1.6+dfsg-1) ...
Setting up r-cran-qlcmatrix (0.9.7-2) ...
Setting up r-cran-dplyr (1.0.9-1) ...
Setting up r-cran-ggplot2 (3.3.6+dfsg-1) ...
Setting up r-cran-viridis (0.6.2-1) ...
Setting up r-cran-ggrepel (0.9.1-1) ...
Setting up r-cran-densityclust (0.3.2-1) ...
Setting up sbuild-build-depends-r-bioc-monocle-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.33-7+rpi1) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-163-generic armhf (armv8l)
Toolchain package versions: binutils_2.38-3+rpi1 dpkg-dev_1.21.7+rpi1 g++-11_11.3.0-1+rpi1 gcc-11_11.3.0-1+rpi1 libc6-dev_2.33-7+rpi1 libstdc++-11-dev_11.3.0-1+rpi1 libstdc++6_12.1.0-2+rpi1 linux-libc-dev_5.16.18-1+rpi1
Package versions: adduser_3.121 apt_2.4.5 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6 binutils_2.38-3+rpi1 binutils-arm-linux-gnueabihf_2.38-3+rpi1 binutils-common_2.38-3+rpi1 bsdextrautils_2.38-4 bsdutils_1:2.38-4 build-essential_12.9 bzip2_1.0.8-5 ca-certificates_20211016 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.3.0-1+rpi1 dash_0.5.11+git20210903+057cd650a4ed-8 dctrl-tools_2.24-3 debconf_1.5.79 debhelper_13.7.1 debianutils_5.7-0.1 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-3+b1 dpkg_1.21.7+rpi1 dpkg-dev_1.21.7+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.28-1 file_1:5.41-4 findutils_4.9.0-2 fontconfig_2.13.1-4.4 fontconfig-config_2.13.1-4.4 fonts-dejavu-core_2.37-2 g++_4:11.2.0-2+rpi1 g++-11_11.3.0-1+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.3.0-1+rpi1 gcc-11-base_11.3.0-1+rpi1 gcc-12-base_12.1.0-2+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-6 gettext-base_0.21-6 gfortran_4:11.2.0-2+rpi1 gfortran-11_11.3.0-1+rpi1 gnupg_2.2.27-3 gnupg-l10n_2.2.27-3 gnupg-utils_2.2.27-3+b1 gpg_2.2.27-3+b1 gpg-agent_2.2.27-3+b1 gpg-wks-client_2.2.27-3+b1 gpg-wks-server_2.2.27-3+b1 gpgconf_2.2.27-3+b1 gpgsm_2.2.27-3+b1 gpgv_2.2.27-3+b1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 icu-devtools_71.1-3 init-system-helpers_1.62 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libalgorithm-c3-perl_0.11-1 libapt-pkg6.0_2.4.5 libarchive-zip-perl_1.68-1 libasan6_11.3.0-1+rpi1 libassuan0_2.5.5-1 libatomic1_12.1.0-2+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-1+b5 libbinutils_2.38-3+rpi1 libblas-dev_3.10.1-1 libblas3_3.10.1-1 libblkid1_2.38-4 libboost-dev_1.74.0.3+b4 libboost1.74-dev_1.74.0-14+b2 libbrotli1_1.0.9-2+b2 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5 libbz2-dev_1.0.8-5 libc-bin_2.33-7+rpi1 libc-dev-bin_2.33-7+rpi1 libc6_2.33-7+rpi1 libc6-dev_2.33-7+rpi1 libcairo2_1.16.0-5 libcap-ng0_0.7.9-2.2+b2 libcap2_1:2.44-1 libcc1-0_12.1.0-2+rpi1 libclass-c3-perl_0.35-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-1+b5 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.38-3+rpi1 libctf0_2.38-3+rpi1 libcurl3-gnutls_7.83.0-1 libcurl4_7.83.0-1 libdata-optlist-perl_0.112-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.262 libdebhelper-perl_13.7.1 libdeflate0_1.10-2 libdevel-callchecker-perl_0.008-1+b3 libdevel-globaldestruction-perl_0.14-1.1 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-1 libdist-checkconflicts-perl_0.11-1.1 libdpkg-perl_1.21.7+rpi1 libdynaloader-functions-perl_0.003-1.1 libelf1_0.187-1 libencode-locale-perl_1.05-1.1 libeval-closure-perl_0.14-1 libexpat1_2.4.8-1 libext2fs2_1.46.5-2 libfakeroot_1.28-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 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liblzma-dev_5.2.5-2.1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-1 libmodule-implementation-perl_0.09-1.1 libmodule-runtime-conflicts-perl_0.003-1.1 libmodule-runtime-perl_0.016-1 libmoose-perl_2.2200-1+b1 libmount1_2.38-4 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libmro-compat-perl_0.15-1 libnamespace-clean-perl_0.27-1 libncurses-dev_6.3+20220423-2 libncurses5-dev_6.3+20220423-2 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.7.3-1 libnghttp2-14_1.47.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpackage-deprecationmanager-perl_0.17-1.1 libpackage-stash-perl_0.40-1 libpackage-stash-xs-perl_0.29-1+b3 libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpango-1.0-0_1.50.7+ds-1 libpangocairo-1.0-0_1.50.7+ds-1 libpangoft2-1.0-0_1.50.7+ds-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libparams-classify-perl_0.015-1+b4 libparams-util-perl_1.102-1+b2 libpcre16-3_2:8.39-14 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lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.2-1 mawk_1.3.4.20200120-3 mount_2.38-4 ncurses-base_6.3-2 ncurses-bin_6.3-2 netbase_6.3 openssl_1.1.1o-1 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-4 perl-base_5.34.0-4 perl-modules-5.34_5.34.0-4 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 r-base-core_4.2.0-1 r-base-dev_4.2.0-1 r-bioc-biobase_2.56.0-1 r-bioc-biocgenerics_0.42.0-1 r-bioc-biocviews_1.64.0-1 r-bioc-graph_1.74.0-1 r-bioc-hsmmsinglecell_1.16.0-1 r-bioc-limma_3.52.0+dfsg-1 r-bioc-rbgl_1.72.0+dfsg-1 r-cran-bh_1.74.0-2 r-cran-biocmanager_1.30.17+dfsg-1 r-cran-bitops_1.0-7-1 r-cran-cli_3.3.0-1 r-cran-cluster_2.1.3-1 r-cran-colorspace_2.0-3+dfsg-1 r-cran-combinat_0.0-8-7 r-cran-crayon_1.5.1-1 r-cran-ddrtree_0.1.5-2 r-cran-densityclust_0.3.2-1 r-cran-digest_0.6.29-1 r-cran-docopt_0.7.1-2 r-cran-dplyr_1.0.9-1 r-cran-ellipsis_0.3.2-2 r-cran-fansi_1.0.3-1 r-cran-farver_2.1.0-1 r-cran-fastica_1.2-3-1 r-cran-fnn_1.1.3-2 r-cran-generics_0.1.2-1 r-cran-ggplot2_3.3.6+dfsg-1 r-cran-ggrepel_0.9.1-1 r-cran-glue_1.6.2-1 r-cran-gridextra_2.3-3 r-cran-gtable_0.3.0+dfsg-2 r-cran-igraph_1.2.11-1 r-cran-irlba_2.3.5-1 r-cran-isoband_0.2.5-1 r-cran-labeling_0.4.2-1 r-cran-lattice_0.20-45-3 r-cran-lifecycle_1.0.1-1 r-cran-littler_0.3.15-1 r-cran-magrittr_2.0.3-1 r-cran-mass_7.3-57-1 r-cran-matrix_1.4-1-1 r-cran-matrixstats_0.62.0-1 r-cran-mgcv_1.8-40-1 r-cran-munsell_0.5.0-2 r-cran-nlme_3.1.157-1 r-cran-pheatmap_1.0.12-2 r-cran-pillar_1.7.0+dfsg-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.2-2 r-cran-plyr_1.8.7-1 r-cran-proxy_0.4-26-1 r-cran-purrr_0.3.4-1+b1 r-cran-qlcmatrix_0.9.7-2 r-cran-r6_2.5.1-1 r-cran-rann_2.6.1-1+b1 r-cran-rcolorbrewer_1.1-3-1 r-cran-rcpp_1.0.8.3-1 r-cran-rcppeigen_0.3.3.9.2-1 r-cran-rcurl_1.98-1.6-1 r-cran-reshape2_1.4.4-2 r-cran-rlang_1.0.2-1 r-cran-rtsne_0.16-1 r-cran-runit_0.4.32-3 r-cran-scales_1.1.1-1 r-cran-slam_0.1-50-1 r-cran-sparsesvd_0.2-2 r-cran-stringi_1.7.6-1+b1 r-cran-stringr_1.4.0-2 r-cran-tibble_3.1.6+dfsg-1 r-cran-tidyselect_1.1.2+dfsg-1 r-cran-utf8_1.2.2-1 r-cran-vctrs_0.4.1-2 r-cran-vgam_1.1-6-1 r-cran-viridis_0.6.2-1 r-cran-viridislite_0.4.0-2 r-cran-withr_2.5.0-1 r-cran-xml_3.99-0.9-1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-monocle-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sysvinit-utils_3.03-1 tar_1.34+dfsg-1 tzdata_2022a-1 ucf_3.0043 unzip_6.0-26 util-linux_2.37.3-1 x11-common_1:7.7+23 xauth_1:1.1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2.1 zip_3.0-12 zlib1g_1:1.2.11.dfsg-4 zlib1g-dev_1:1.2.11.dfsg-4
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.JqsZKp0w/trustedkeys.kbx': General error
gpgv: Signature made Thu May 19 14:55:54 2022 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "nilesh@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./r-bioc-monocle_2.22.0-2.dsc
dpkg-source: info: extracting r-bioc-monocle in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-monocle_2.22.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-monocle_2.22.0-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying bioc-3.15.patch
dpkg-source: info: applying drop-bioc-destiny-from-suggests.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-48941f16-907b-4a32-b258-bd13bec250f8
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-monocle
dpkg-buildpackage: info: source version 2.22.0-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-monocle/ -a -O--buildsystem=R
I: R packages needed for DEP8: testthat
I: R Package: monocle Version: 2.22.0
I: Building using R version 4.2.0-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Thu, 19 May 2022 20:21:42 +0530
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-monocle/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-monocle/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 19 May 2022 20:21:42 +0530'"
* installing *source* package 'monocle' ...
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-2bkVJg/r-base-4.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-2bkVJg/r-base-4.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c clustering.cpp -o clustering.o
g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-z,relro -o monocle.so RcppExports.o clustering.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-monocle/usr/lib/R/site-library/00LOCK-r-bioc-monocle-2.22.0/00new/monocle/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (monocle)
W: Ignoring specified R dependency: R (>= 2.10.0)
I: Using r-cran-matrix for Depends:Matrix (>= 1.2-6)
I: Using r-bioc-biobase for Depends:Biobase
I: Using r-cran-ggplot2 for Depends:ggplot2 (>= 1.0.0)
I: Using r-cran-vgam for Depends:VGAM (>= 1.0-6)
I: Using r-cran-ddrtree for Depends:DDRTree (>= 0.1.4)
I: Using r-cran-testthat for Recommends:testthat
I: Using r-cran-hmisc for Suggests:Hmisc
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-seurat for Suggests:Seurat
I: Using r-bioc-scater for Suggests:scater
I: Using r-cran-igraph for Imports:igraph (>= 1.0.1)
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
I: Using r-bioc-hsmmsinglecell for Imports:HSMMSingleCell (>= 0.101.5)
I: Using r-cran-plyr for Imports:plyr
I: Using r-cran-cluster for Imports:cluster
I: Using r-cran-combinat for Imports:combinat
I: Using r-cran-fastica for Imports:fastICA
I: Using r-cran-irlba for Imports:irlba (>= 2.0.0)
I: Using r-cran-matrixstats for Imports:matrixStats
I: Using r-cran-densityclust for Imports:densityClust (>= 0.3)
I: Using r-cran-rtsne for Imports:Rtsne
I: Using r-cran-mass for Imports:MASS
I: Using r-cran-reshape2 for Imports:reshape2
I: Using r-bioc-limma for Imports:limma
I: Using r-cran-tibble for Imports:tibble
I: Using r-cran-dplyr for Imports:dplyr
I: Using r-cran-qlcmatrix for Imports:qlcMatrix
I: Using r-cran-pheatmap for Imports:pheatmap
I: Using r-cran-stringr for Imports:stringr
I: Using r-cran-proxy for Imports:proxy
I: Using r-cran-slam for Imports:slam
I: Using r-cran-viridis for Imports:viridis
I: Using r-bioc-biocviews for Imports:biocViews
I: Using r-cran-rann for Imports:RANN (>= 2.5)
I: Using r-cran-rcpp for Imports:Rcpp (>= 0.12.0)
I: Using r-cran-rcpp for LinkingTo:Rcpp
I: BioConductor API version: r-api-bioc-3.15
I: Use r-bioc-monocle as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-monocle-dbgsym' in '../r-bioc-monocle-dbgsym_2.22.0-2_armhf.deb'.
dpkg-deb: building package 'r-bioc-monocle' in '../r-bioc-monocle_2.22.0-2_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-bioc-monocle_2.22.0-2_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../r-bioc-monocle_2.22.0-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-05-24T16:57:37Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-monocle_2.22.0-2_armhf.changes:
--------------------------------------
Format: 1.8
Date: Thu, 19 May 2022 20:21:42 +0530
Source: r-bioc-monocle
Binary: r-bioc-monocle r-bioc-monocle-dbgsym
Architecture: armhf
Version: 2.22.0-2
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
r-bioc-monocle - clustering, differential expression, and trajectory analysis for
Changes:
r-bioc-monocle (2.22.0-2) unstable; urgency=medium
.
* Team upload.
* Re-build for bioc-3.15 transition
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Files:
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9d85d7f6702d226490d5c35103b6ef93 11972 gnu-r optional r-bioc-monocle_2.22.0-2_armhf.buildinfo
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-monocle-dbgsym_2.22.0-2_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 360224 bytes: control archive=540 bytes.
394 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-monocle-dbgsym
Source: r-bioc-monocle
Version: 2.22.0-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 380
Depends: r-bioc-monocle (= 2.22.0-2)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-monocle
Build-Ids: 6e91450ba1ae4ff9886c2a1a7a3f8d65fa908338
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r-bioc-monocle_2.22.0-2_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 1470812 bytes: control archive=3172 bytes.
1640 bytes, 19 lines control
7225 bytes, 80 lines md5sums
Package: r-bioc-monocle
Version: 2.22.0-2
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 1738
Depends: r-base-core (>= 4.2.0-1), r-api-4.0, r-api-bioc-3.15, r-cran-matrix (>= 1.2-6), r-bioc-biobase, r-cran-ggplot2 (>= 1.0.0), r-cran-vgam (>= 1.0-6), r-cran-ddrtree (>= 0.1.4), r-cran-igraph (>= 1.0.1), r-bioc-biocgenerics, r-bioc-hsmmsinglecell (>= 0.101.5), r-cran-plyr, r-cran-cluster, r-cran-combinat, r-cran-fastica, r-cran-irlba (>= 2.0.0), r-cran-matrixstats, r-cran-densityclust (>= 0.3), r-cran-rtsne, r-cran-mass, r-cran-reshape2, r-bioc-limma, r-cran-tibble, r-cran-dplyr, r-cran-qlcmatrix, r-cran-pheatmap, r-cran-stringr, r-cran-proxy, r-cran-slam, r-cran-viridis, r-bioc-biocviews, r-cran-rann (>= 2.5), r-cran-rcpp (>= 0.12.0), libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 11)
Recommends: r-cran-testthat
Suggests: r-cran-hmisc, r-cran-knitr, r-cran-seurat, r-bioc-scater
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/monocle/
Description: clustering, differential expression, and trajectory analysis for RNA-Seq
Monocle performs differential expression and time-series analysis
for single-cell expression experiments. It orders individual cells
according to progress through a biological process, without knowing ahead
of time which genes define progress through that process. Monocle also
performs differential expression analysis, clustering, visualization, and
other useful tasks on single cell expression data. It is designed to work
with RNA-Seq and qPCR data, but could be used with other types as well.
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+------------------------------------------------------------------------------+
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+------------------------------------------------------------------------------+
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| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 15384
Build-Time: 95
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1120
Job: r-bioc-monocle_2.22.0-2
Machine Architecture: armhf
Package: r-bioc-monocle
Package-Time: 1236
Source-Version: 2.22.0-2
Space: 15384
Status: successful
Version: 2.22.0-2
--------------------------------------------------------------------------------
Finished at 2022-05-24T16:57:37Z
Build needed 00:20:36, 15384k disk space