r-bioc-monocle →
2.20.0-2 →
armhf → 2021-09-30 00:18:30
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| r-bioc-monocle 2.20.0-2 (armhf) Wed, 29 Sep 2021 23:53:59 +0000 |
+==============================================================================+
Package: r-bioc-monocle
Version: 2.20.0-2
Source Version: 2.20.0-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-2540fc14-a7bf-416b-82f3-bb4ce148c7cb' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.8 MB in 26s (988 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-monocle' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-monocle.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-monocle.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 9506 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main r-bioc-monocle 2.20.0-2 (dsc) [2616 B]
Get:2 http://172.17.0.1/private bookworm-staging/main r-bioc-monocle 2.20.0-2 (tar) [9497 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main r-bioc-monocle 2.20.0-2 (diff) [6024 B]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-monocle-uI5kKc/r-bioc-monocle-2.20.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-monocle-uI5kKc' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-zbmnVN/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-zbmnVN/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-zbmnVN/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-zbmnVN/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-zbmnVN/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-zbmnVN/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-zbmnVN/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-zbmnVN/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2891 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 12 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-zbmnVN/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (19.1 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-matrix (>= 1.2-6), r-bioc-biobase, r-cran-ggplot2, r-cran-vgam, r-cran-ddrtree, r-cran-igraph, r-bioc-biocgenerics, r-bioc-hsmmsinglecell, r-cran-plyr, r-cran-cluster, r-cran-combinat, r-cran-fastica, r-cran-irlba, r-cran-matrixstats, r-cran-densityclust, r-cran-rtsne, r-cran-mass, r-cran-reshape2, r-bioc-limma, r-cran-tibble, r-cran-dplyr, r-cran-qlcmatrix, r-cran-pheatmap, r-cran-stringr, r-cran-proxy, r-cran-slam, r-cran-viridis, r-bioc-biocviews, r-cran-rann, r-cran-rcpp (>= 0.12.0)
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-matrix (>= 1.2-6), r-bioc-biobase, r-cran-ggplot2, r-cran-vgam, r-cran-ddrtree, r-cran-igraph, r-bioc-biocgenerics, r-bioc-hsmmsinglecell, r-cran-plyr, r-cran-cluster, r-cran-combinat, r-cran-fastica, r-cran-irlba, r-cran-matrixstats, r-cran-densityclust, r-cran-rtsne, r-cran-mass, r-cran-reshape2, r-bioc-limma, r-cran-tibble, r-cran-dplyr, r-cran-qlcmatrix, r-cran-pheatmap, r-cran-stringr, r-cran-proxy, r-cran-slam, r-cran-viridis, r-bioc-biocviews, r-cran-rann, r-cran-rcpp (>= 0.12.0)
dpkg-deb: building package 'sbuild-build-depends-r-bioc-monocle-dummy' in '/<<BUILDDIR>>/resolver-zbmnVN/apt_archive/sbuild-build-depends-r-bioc-monocle-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-monocle-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-zbmnVN/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-zbmnVN/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-zbmnVN/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-zbmnVN/apt_archive ./ Sources [707 B]
Get:5 copy:/<<BUILDDIR>>/resolver-zbmnVN/apt_archive ./ Packages [789 B]
Fetched 2829 B in 1s (3693 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-monocle build dependencies (apt-based resolver)
--------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
cpp-10 dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core g++-10 gcc-10
gcc-10-base gettext gettext-base gfortran gfortran-10 groff-base
icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl
libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo2
libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls
libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1 libffi8
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgcc-10-dev libgfortran-10-dev libgfortran5
libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libstdc++-10-dev libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db openssl pkg-config po-debconf r-base-core
r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocviews r-bioc-graph
r-bioc-hsmmsinglecell r-bioc-limma r-bioc-rbgl r-cran-bh r-cran-biocmanager
r-cran-bitops r-cran-cli r-cran-cluster r-cran-colorspace r-cran-combinat
r-cran-crayon r-cran-ddrtree r-cran-densityclust r-cran-digest r-cran-docopt
r-cran-dplyr r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-fastica
r-cran-fnn r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-glue
r-cran-gridextra r-cran-gtable r-cran-igraph r-cran-irlba r-cran-isoband
r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler
r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv
r-cran-munsell r-cran-nlme r-cran-pheatmap r-cran-pillar r-cran-pkgconfig
r-cran-pkgkitten r-cran-plyr r-cran-proxy r-cran-purrr r-cran-qlcmatrix
r-cran-r6 r-cran-rann r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen
r-cran-rcurl r-cran-reshape2 r-cran-rlang r-cran-rtsne r-cran-runit
r-cran-scales r-cran-slam r-cran-sparsesvd r-cran-stringi r-cran-stringr
r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-vgam
r-cran-viridis r-cran-viridislite r-cran-withr r-cran-xml sensible-utils ucf
unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-10-locales debtags dh-make
postgresql-client-common gcc-10-doc gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-10-doc libcoarrays-dev groff
liblapack-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev
libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev
libboost-contract1.74-dev libboost-coroutine1.74-dev
libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-program-options1.74-dev libboost-python1.74-dev
libboost-random1.74-dev libboost-regex1.74-dev
libboost-serialization1.74-dev libboost-stacktrace1.74-dev
libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc
libstdc++-10-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libwww-perl
libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl
elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base
texlive-latex-base texlive-plain-generic texlive-fonts-recommended
texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
texlive-latex-extra texinfo r-bioc-all r-bioc-s4vectors r-bioc-iranges
r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools
r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-knitr
r-cran-commonmark r-cran-sparsem r-cran-biasedurn r-cran-ellipse
r-cran-gplots r-bioc-biocversion r-cran-remotes r-cran-curl r-cran-callr
r-cran-covr r-cran-htmlwidgets r-cran-prettycode r-cran-processx r-cran-ps
r-cran-rmarkdown r-cran-rstudioapi r-cran-shiny r-cran-kernsmooth
r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-png
r-cran-jpeg r-cran-bench r-cran-broom r-cran-dbi r-cran-rmysql
r-cran-rpostgresql r-cran-unitizer r-cran-devtools r-cran-ggbeeswarm
r-cran-readr r-cran-rsqlite r-cran-r.utils r-cran-forcats r-cran-ape
r-cran-rgl r-cran-magick r-cran-sf r-cran-getopt r-cran-base64enc
r-cran-markdown r-cran-bit64 r-cran-formattable r-cran-survival r-cran-units
r-cran-testthat r-cran-doparallel r-cran-foreach r-cran-iterators
r-cran-itertools r-cran-inline r-cran-dichromat r-cran-blob r-cran-evaluate
r-cran-hms r-cran-htmltools r-cran-tidyr r-cran-zeallot
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-statmod r-bioc-go.db
r-bioc-org.hs.eg.db r-cran-locfit r-cran-testthat r-cran-mockery
r-cran-data.table r-cran-rsqlite r-cran-hms r-cran-bit64 r-cran-dbplyr
r-cran-pkgload r-cran-covr r-cran-ragg r-cran-hexbin r-cran-hmisc
r-cran-interp r-cran-knitr r-cran-mapproj r-cran-maps r-cran-maptools
r-cran-multcomp r-cran-quantreg r-cran-rmarkdown r-cran-rpart r-cran-sf
r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-lubridate r-cran-domc
r-cran-abind r-cran-cba r-cran-htmltools r-cran-htmlwidgets r-cran-mockr
r-cran-waldo r-cran-dbi libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-10 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libffi8 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc
libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db openssl pkg-config po-debconf r-base-core
r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocviews r-bioc-graph
r-bioc-hsmmsinglecell r-bioc-limma r-bioc-rbgl r-cran-bh r-cran-biocmanager
r-cran-bitops r-cran-cli r-cran-cluster r-cran-colorspace r-cran-combinat
r-cran-crayon r-cran-ddrtree r-cran-densityclust r-cran-digest r-cran-docopt
r-cran-dplyr r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-fastica
r-cran-fnn r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-glue
r-cran-gridextra r-cran-gtable r-cran-igraph r-cran-irlba r-cran-isoband
r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler
r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv
r-cran-munsell r-cran-nlme r-cran-pheatmap r-cran-pillar r-cran-pkgconfig
r-cran-pkgkitten r-cran-plyr r-cran-proxy r-cran-purrr r-cran-qlcmatrix
r-cran-r6 r-cran-rann r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen
r-cran-rcurl r-cran-reshape2 r-cran-rlang r-cran-rtsne r-cran-runit
r-cran-scales r-cran-slam r-cran-sparsesvd r-cran-stringi r-cran-stringr
r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-vgam
r-cran-viridis r-cran-viridislite r-cran-withr r-cran-xml
sbuild-build-depends-r-bioc-monocle-dummy sensible-utils ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp-10 g++-10 gcc-10 gcc-10-base libgcc-10-dev libstdc++-10-dev
6 upgraded, 249 newly installed, 0 to remove and 6 not upgraded.
Need to get 207 MB of archives.
After this operation, 516 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-zbmnVN/apt_archive ./ sbuild-build-depends-r-bioc-monocle-dummy 0.invalid.0 [1076 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-1 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf g++-10 armhf 10.3.0-11+rpi1 [7350 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf gcc-10 armhf 10.3.0-11+rpi1 [13.4 MB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libstdc++-10-dev armhf 10.3.0-11+rpi1 [1755 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libgcc-10-dev armhf 10.3.0-11+rpi1 [678 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf cpp-10 armhf 10.3.0-11+rpi1 [6690 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf gcc-10-base armhf 10.3.0-11+rpi1 [206 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf openssl armhf 1.1.1l-1 [815 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf unzip armhf 6.0-26 [151 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-2 [80.3 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [353 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.3-3 [27.2 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libcurl4 armhf 7.74.0-1.3 [305 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libffi8 armhf 3.4.2-2 [21.2 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.0-1 [1208 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-4+rpi1 [235 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libthai-data all 0.1.28-4.1 [171 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-1+b1 [39.7 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf libthai0 armhf 0.1.28-4.1 [51.4 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.48.10+ds1-1 [184 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.48.10+ds1-1 [66.6 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.48.10+ds1-1 [56.8 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.11+dfsg-1 [894 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.7-2 [44.1 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libtiff5 armhf 4.2.0-1 [268 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.11.1-1 [681 kB]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf r-base-core armhf 4.1.1-2 [25.3 MB]
Get:102 http://172.17.0.1/private bookworm-staging/main armhf libgfortran-10-dev armhf 10.3.0-11+rpi1 [277 kB]
Get:103 http://172.17.0.1/private bookworm-staging/main armhf gfortran-10 armhf 10.3.0-11+rpi1 [7201 kB]
Get:104 http://172.17.0.1/private bookworm-staging/main armhf gfortran armhf 4:10.2.1-1+rpi1 [1428 B]
Get:105 http://172.17.0.1/private bookworm-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:106 http://172.17.0.1/private bookworm-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:107 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.2+20201114-4 [79.7 kB]
Get:108 http://172.17.0.1/private bookworm-staging/main armhf libncurses-dev armhf 6.2+20201114-4 [288 kB]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.2+20201114-4 [940 B]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf libreadline-dev armhf 8.1-2 [121 kB]
Get:111 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.6-4 [240 kB]
Get:112 http://172.17.0.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.0.6-4 [67.8 kB]
Get:113 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.36-2 [197 kB]
Get:114 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.36-2 [187 kB]
Get:115 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-posix2 armhf 10.36-2 [48.7 kB]
Get:116 http://172.17.0.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.36-2 [626 kB]
Get:117 http://172.17.0.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:118 http://172.17.0.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:119 http://172.17.0.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:120 http://172.17.0.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:121 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:122 http://172.17.0.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:123 http://172.17.0.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:124 http://172.17.0.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2 [219 kB]
Get:125 http://172.17.0.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:126 http://172.17.0.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:127 http://172.17.0.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:128 http://172.17.0.1/private bookworm-staging/main armhf xauth armhf 1:1.1-1 [36.6 kB]
Get:129 http://172.17.0.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:130 http://172.17.0.1/private bookworm-staging/main armhf r-base-dev all 4.1.1-2 [4488 B]
Get:131 http://172.17.0.1/private bookworm-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:132 http://172.17.0.1/private bookworm-staging/main armhf libswitch-perl all 2.17-2.1 [20.0 kB]
Get:133 http://172.17.0.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:134 http://172.17.0.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:135 http://172.17.0.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:136 http://172.17.0.1/private bookworm-staging/main armhf libio-html-perl all 1.004-2 [16.1 kB]
Get:137 http://172.17.0.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:138 http://172.17.0.1/private bookworm-staging/main armhf liburi-perl all 5.08-1 [90.6 kB]
Get:139 http://172.17.0.1/private bookworm-staging/main armhf libhttp-message-perl all 6.33-1 [80.1 kB]
Get:140 http://172.17.0.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB]
Get:141 http://172.17.0.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:142 http://172.17.0.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:143 http://172.17.0.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:144 http://172.17.0.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:145 http://172.17.0.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:146 http://172.17.0.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:147 http://172.17.0.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:148 http://172.17.0.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:149 http://172.17.0.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get:150 http://172.17.0.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.39-1 [21.9 kB]
Get:151 http://172.17.0.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:152 http://172.17.0.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b4 [14.3 kB]
Get:153 http://172.17.0.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:154 http://172.17.0.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get:155 http://172.17.0.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:156 http://172.17.0.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:157 http://172.17.0.1/private bookworm-staging/main armhf libmro-compat-perl all 0.13-1 [12.2 kB]
Get:158 http://172.17.0.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:159 http://172.17.0.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:160 http://172.17.0.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:161 http://172.17.0.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:162 http://172.17.0.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get:163 http://172.17.0.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get:164 http://172.17.0.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB]
Get:165 http://172.17.0.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get:166 http://172.17.0.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.5 kB]
Get:167 http://172.17.0.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2014-2 [802 kB]
Get:168 http://172.17.0.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB]
Get:169 http://172.17.0.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB]
Get:170 http://172.17.0.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB]
Get:171 http://172.17.0.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:172 http://172.17.0.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.74.0-1.3 [301 kB]
Get:173 http://172.17.0.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-7+b1 [58.9 kB]
Get:174 http://172.17.0.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:175 http://172.17.0.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:176 http://172.17.0.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-9 [9534 kB]
Get:177 http://172.17.0.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b1 [4820 B]
Get:178 http://172.17.0.1/private bookworm-staging/main armhf r-cran-littler armhf 0.3.13-2 [94.5 kB]
Get:179 http://172.17.0.1/private bookworm-staging/main armhf littler all 0.3.13-2 [16.4 kB]
Get:180 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.38.0-1 [648 kB]
Get:181 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biobase armhf 2.52.0-1 [2214 kB]
Get:182 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-graph armhf 1.70.0-1 [1604 kB]
Get:183 http://172.17.0.1/private bookworm-staging/main armhf r-cran-bh all 1.74.0-2 [5524 B]
Get:184 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-rbgl armhf 1.68.0+dfsg-1 [749 kB]
Get:185 http://172.17.0.1/private bookworm-staging/main armhf r-cran-xml armhf 3.99-0.8-1 [1720 kB]
Get:186 http://172.17.0.1/private bookworm-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:187 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rcurl armhf 1.98-1.5-1 [800 kB]
Get:188 http://172.17.0.1/private bookworm-staging/main armhf r-cran-runit all 0.4.32-3 [294 kB]
Get:189 http://172.17.0.1/private bookworm-staging/main armhf r-cran-biocmanager all 1.30.10+dfsg-2 [94.8 kB]
Get:190 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-biocviews all 1.60.0-1 [657 kB]
Get:191 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-hsmmsinglecell all 1.12.0-1 [16.8 MB]
Get:192 http://172.17.0.1/private bookworm-staging/main armhf r-bioc-limma armhf 3.48.3+dfsg-1 [1776 kB]
Get:193 http://172.17.0.1/private bookworm-staging/main armhf r-cran-glue armhf 1.4.2-1 [139 kB]
Get:194 http://172.17.0.1/private bookworm-staging/main armhf r-cran-cli armhf 3.0.1-1 [735 kB]
Get:195 http://172.17.0.1/private bookworm-staging/main armhf r-cran-cluster armhf 2.1.2-2 [551 kB]
Get:196 http://172.17.0.1/private bookworm-staging/main armhf r-cran-colorspace armhf 2.0-2+dfsg-1 [1690 kB]
Get:197 http://172.17.0.1/private bookworm-staging/main armhf r-cran-combinat all 0.0-8-7 [42.8 kB]
Get:198 http://172.17.0.1/private bookworm-staging/main armhf r-cran-crayon all 1.4.1-1 [145 kB]
Get:199 http://172.17.0.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-41-1+b1 [1167 kB]
Get:200 http://172.17.0.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.3-2-1 [3565 kB]
Get:201 http://172.17.0.1/private bookworm-staging/main armhf r-cran-irlba armhf 2.3.3-2 [293 kB]
Get:202 http://172.17.0.1/private bookworm-staging/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get:203 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rcpp armhf 1.0.7-2 [1997 kB]
Get:204 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rcppeigen armhf 0.3.3.9.1-1 [1324 kB]
Get:205 http://172.17.0.1/private bookworm-staging/main armhf r-cran-ddrtree armhf 0.1.5-2 [123 kB]
Get:206 http://172.17.0.1/private bookworm-staging/main armhf r-cran-fnn armhf 1.1.3-2 [114 kB]
Get:207 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rtsne armhf 0.15-2+b1 [87.3 kB]
Get:208 http://172.17.0.1/private bookworm-staging/main armhf r-cran-digest armhf 0.6.28-1 [187 kB]
Get:209 http://172.17.0.1/private bookworm-staging/main armhf r-cran-gtable all 0.3.0+dfsg-2 [163 kB]
Get:210 http://172.17.0.1/private bookworm-staging/main armhf r-cran-isoband armhf 0.2.5-1 [1756 kB]
Get:211 http://172.17.0.1/private bookworm-staging/main armhf r-cran-mass armhf 7.3-54-2 [1117 kB]
Get:212 http://172.17.0.1/private bookworm-staging/main armhf r-cran-nlme armhf 3.1.153-1 [2266 kB]
Get:213 http://172.17.0.1/private bookworm-staging/main armhf r-cran-mgcv armhf 1.8-37-1 [2980 kB]
Get:214 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rlang armhf 0.4.11-1 [1186 kB]
Get:215 http://172.17.0.1/private bookworm-staging/main armhf r-cran-farver armhf 2.1.0-1 [1394 kB]
Get:216 http://172.17.0.1/private bookworm-staging/main armhf r-cran-labeling all 0.4.2-1 [62.7 kB]
Get:217 http://172.17.0.1/private bookworm-staging/main armhf r-cran-lifecycle all 1.0.0-1 [91.2 kB]
Get:218 http://172.17.0.1/private bookworm-staging/main armhf r-cran-munsell all 0.5.0-2 [236 kB]
Get:219 http://172.17.0.1/private bookworm-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:220 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rcolorbrewer all 1.1-2-3 [54.4 kB]
Get:221 http://172.17.0.1/private bookworm-staging/main armhf r-cran-viridislite all 0.4.0-2 [1298 kB]
Get:222 http://172.17.0.1/private bookworm-staging/main armhf r-cran-scales all 1.1.1-1 [557 kB]
Get:223 http://172.17.0.1/private bookworm-staging/main armhf r-cran-ellipsis armhf 0.3.2-2 [35.1 kB]
Get:224 http://172.17.0.1/private bookworm-staging/main armhf r-cran-fansi armhf 0.5.0-1 [379 kB]
Get:225 http://172.17.0.1/private bookworm-staging/main armhf r-cran-magrittr armhf 2.0.1-1 [197 kB]
Get:226 http://172.17.0.1/private bookworm-staging/main armhf r-cran-utf8 armhf 1.2.2-1 [129 kB]
Get:227 http://172.17.0.1/private bookworm-staging/main armhf r-cran-vctrs armhf 0.3.8-1 [1099 kB]
Get:228 http://172.17.0.1/private bookworm-staging/main armhf r-cran-pillar all 1.6.2+dfsg-1 [410 kB]
Get:229 http://172.17.0.1/private bookworm-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:230 http://172.17.0.1/private bookworm-staging/main armhf r-cran-tibble armhf 3.0.6+dfsg-1 [417 kB]
Get:231 http://172.17.0.1/private bookworm-staging/main armhf r-cran-withr all 2.4.2-1 [213 kB]
Get:232 http://172.17.0.1/private bookworm-staging/main armhf r-cran-ggplot2 all 3.3.5+dfsg-2 [3215 kB]
Get:233 http://172.17.0.1/private bookworm-staging/main armhf r-cran-ggrepel armhf 0.9.1-1 [369 kB]
Get:234 http://172.17.0.1/private bookworm-staging/main armhf r-cran-gridextra all 2.3-3 [1024 kB]
Get:235 http://172.17.0.1/private bookworm-staging/main armhf r-cran-densityclust armhf 0.3-2 [90.2 kB]
Get:236 http://172.17.0.1/private bookworm-staging/main armhf r-cran-docopt all 0.7.1-2 [249 kB]
Get:237 http://172.17.0.1/private bookworm-staging/main armhf r-cran-generics all 0.1.0-1 [73.5 kB]
Get:238 http://172.17.0.1/private bookworm-staging/main armhf r-cran-purrr armhf 0.3.4-1+b1 [402 kB]
Get:239 http://172.17.0.1/private bookworm-staging/main armhf r-cran-tidyselect armhf 1.1.1+dfsg-1 [194 kB]
Get:240 http://172.17.0.1/private bookworm-staging/main armhf r-cran-dplyr armhf 1.0.4-1 [1154 kB]
Get:241 http://172.17.0.1/private bookworm-staging/main armhf r-cran-fastica armhf 1.2-2-2+b1 [40.0 kB]
Get:242 http://172.17.0.1/private bookworm-staging/main armhf r-cran-igraph armhf 1.2.6-1 [3338 kB]
Get:243 http://172.17.0.1/private bookworm-staging/main armhf r-cran-matrixstats armhf 0.61.0-1 [451 kB]
Get:244 http://172.17.0.1/private bookworm-staging/main armhf r-cran-pheatmap all 1.0.12-2 [77.9 kB]
Get:245 http://172.17.0.1/private bookworm-staging/main armhf r-cran-plyr armhf 1.8.6-2 [830 kB]
Get:246 http://172.17.0.1/private bookworm-staging/main armhf r-cran-proxy armhf 0.4-26-1 [222 kB]
Get:247 http://172.17.0.1/private bookworm-staging/main armhf r-cran-slam armhf 0.1-48-1 [180 kB]
Get:248 http://172.17.0.1/private bookworm-staging/main armhf r-cran-sparsesvd armhf 0.2-2 [37.9 kB]
Get:249 http://172.17.0.1/private bookworm-staging/main armhf r-cran-qlcmatrix all 0.9.7-2 [3297 kB]
Get:250 http://172.17.0.1/private bookworm-staging/main armhf r-cran-rann armhf 2.6.1-1+b1 [38.3 kB]
Get:251 http://172.17.0.1/private bookworm-staging/main armhf r-cran-stringi armhf 1.7.4-1 [773 kB]
Get:252 http://172.17.0.1/private bookworm-staging/main armhf r-cran-stringr all 1.4.0-2 [199 kB]
Get:253 http://172.17.0.1/private bookworm-staging/main armhf r-cran-reshape2 armhf 1.4.4-2 [110 kB]
Get:254 http://172.17.0.1/private bookworm-staging/main armhf r-cran-vgam armhf 1.1-5-1 [6982 kB]
Get:255 http://172.17.0.1/private bookworm-staging/main armhf r-cran-viridis all 0.6.1-2 [2999 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl (0.015-1+b3) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl (4.17-7+b1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up gfortran-10 (10.3.0-11+rpi1) ...
Setting up libdist-checkconflicts-perl (0.11-1.1) ...
Setting up libxt6:armhf (1:1.2.0-1) ...
Setting up xauth (1:1.1-1) ...
Setting up libboost-dev:armhf (1.74.0.3+b1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-4.2) ...
Setting up r-cran-bh (1.74.0-2) ...
Setting up fontconfig (2.13.1-4.2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up libmodule-implementation-perl (0.09-1.1) ...
Setting up libpackage-stash-perl (0.39-1) ...
Setting up libtk8.6:armhf (8.6.11.1-1) ...
Setting up libpango-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up debhelper (13.5.2) ...
Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ...
Setting up gfortran (4:10.2.1-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.16.0-5) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up libpackage-deprecationmanager-perl (0.17-1.1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-1+b4) ...
Setting up libpangoft2-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libb-hooks-endofscope-perl (0.24-1.1) ...
Setting up libpangocairo-1.0-0:armhf (1.48.10+ds1-1) ...
Setting up libmoose-perl (2.2014-2) ...
Setting up r-base-core (4.1.1-2) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.4.1-1) ...
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up r-cran-gtable (0.3.0+dfsg-2) ...
Setting up r-cran-labeling (0.4.2-1) ...
Setting up r-cran-lattice (0.20-41-1+b1) ...
Setting up r-cran-nlme (3.1.153-1) ...
Setting up r-cran-farver (2.1.0-1) ...
Setting up r-cran-xml (3.99-0.8-1) ...
Setting up r-cran-viridislite (0.4.0-2) ...
Setting up r-cran-cluster (2.1.2-2) ...
Setting up r-cran-proxy (0.4-26-1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.2-2) ...
Setting up r-cran-magrittr (2.0.1-1) ...
Setting up r-cran-littler (0.3.13-2) ...
Setting up r-cran-rcpp (1.0.7-2) ...
Setting up r-cran-combinat (0.0-8-7) ...
Setting up r-bioc-biocgenerics (0.38.0-1) ...
Setting up r-cran-rlang (0.4.11-1) ...
Setting up r-cran-matrixstats (0.61.0-1) ...
Setting up r-base-dev (4.1.1-2) ...
Setting up littler (0.3.13-2) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up r-cran-vgam (1.1-5-1) ...
Setting up r-cran-withr (2.4.2-1) ...
Setting up r-cran-slam (0.1-48-1) ...
Setting up r-cran-generics (0.1.0-1) ...
Setting up r-cran-digest (0.6.28-1) ...
Setting up r-cran-rann (2.6.1-1+b1) ...
Setting up r-cran-docopt (0.7.1-2) ...
Setting up r-cran-fansi (0.5.0-1) ...
Setting up r-cran-fastica (1.2-2-2+b1) ...
Setting up r-cran-mass (7.3-54-2) ...
Setting up r-cran-glue (1.4.2-1) ...
Setting up r-cran-cli (3.0.1-1) ...
Setting up r-cran-lifecycle (1.0.0-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-cran-fnn (1.1.3-2) ...
Setting up r-cran-biocmanager (1.30.10+dfsg-2) ...
Setting up r-bioc-biobase (2.52.0-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.2-1) ...
Setting up r-cran-colorspace (2.0-2+dfsg-1) ...
Setting up r-cran-stringi (1.7.4-1) ...
Setting up r-cran-plyr (1.8.6-2) ...
Setting up r-cran-rcolorbrewer (1.1-2-3) ...
Setting up r-cran-isoband (0.2.5-1) ...
Setting up r-cran-runit (0.4.32-3) ...
Setting up r-cran-gridextra (2.3-3) ...
Setting up r-bioc-limma (3.48.3+dfsg-1) ...
Setting up r-cran-purrr (0.3.4-1+b1) ...
Setting up r-cran-matrix (1.3-2-1) ...
Setting up r-cran-irlba (2.3.3-2) ...
Setting up r-cran-mgcv (1.8-37-1) ...
Setting up r-cran-rtsne (0.15-2+b1) ...
Setting up dh-r (20210816) ...
Setting up r-cran-rcurl (1.98-1.5-1) ...
Setting up r-cran-rcppeigen (0.3.3.9.1-1) ...
Setting up r-bioc-graph (1.70.0-1) ...
Setting up r-cran-ellipsis (0.3.2-2) ...
Setting up r-bioc-rbgl (1.68.0+dfsg-1) ...
Setting up r-bioc-biocviews (1.60.0-1) ...
Setting up r-bioc-hsmmsinglecell (1.12.0-1) ...
Setting up r-cran-stringr (1.4.0-2) ...
Setting up r-cran-munsell (0.5.0-2) ...
Setting up r-cran-igraph (1.2.6-1) ...
Setting up r-cran-sparsesvd (0.2-2) ...
Setting up r-cran-reshape2 (1.4.4-2) ...
Setting up r-cran-ddrtree (0.1.5-2) ...
Setting up r-cran-scales (1.1.1-1) ...
Setting up r-cran-vctrs (0.3.8-1) ...
Setting up r-cran-pillar (1.6.2+dfsg-1) ...
Setting up r-cran-pheatmap (1.0.12-2) ...
Setting up r-cran-tibble (3.0.6+dfsg-1) ...
Setting up r-cran-qlcmatrix (0.9.7-2) ...
Setting up r-cran-tidyselect (1.1.1+dfsg-1) ...
Setting up r-cran-dplyr (1.0.4-1) ...
Setting up r-cran-ggplot2 (3.3.5+dfsg-2) ...
Setting up r-cran-viridis (0.6.1-2) ...
Setting up r-cran-ggrepel (0.9.1-1) ...
Setting up r-cran-densityclust (0.3-2) ...
Setting up sbuild-build-depends-r-bioc-monocle-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-11+rpi1 gcc-10_10.3.0-11+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-4+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-1 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-11+rpi1 dash_0.5.11+git20210120+802ebd4-1 dctrl-tools_2.24-3 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-11+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-11+rpi1 gcc-10-base_10.3.0-11+rpi1 gcc-11-base_11.2.0-4+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 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r-cran-ggrepel_0.9.1-1 r-cran-glue_1.4.2-1 r-cran-gridextra_2.3-3 r-cran-gtable_0.3.0+dfsg-2 r-cran-igraph_1.2.6-1 r-cran-irlba_2.3.3-2 r-cran-isoband_0.2.5-1 r-cran-labeling_0.4.2-1 r-cran-lattice_0.20-41-1+b1 r-cran-lifecycle_1.0.0-1 r-cran-littler_0.3.13-2 r-cran-magrittr_2.0.1-1 r-cran-mass_7.3-54-2 r-cran-matrix_1.3-2-1 r-cran-matrixstats_0.61.0-1 r-cran-mgcv_1.8-37-1 r-cran-munsell_0.5.0-2 r-cran-nlme_3.1.153-1 r-cran-pheatmap_1.0.12-2 r-cran-pillar_1.6.2+dfsg-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.2-2 r-cran-plyr_1.8.6-2 r-cran-proxy_0.4-26-1 r-cran-purrr_0.3.4-1+b1 r-cran-qlcmatrix_0.9.7-2 r-cran-r6_2.5.1-1 r-cran-rann_2.6.1-1+b1 r-cran-rcolorbrewer_1.1-2-3 r-cran-rcpp_1.0.7-2 r-cran-rcppeigen_0.3.3.9.1-1 r-cran-rcurl_1.98-1.5-1 r-cran-reshape2_1.4.4-2 r-cran-rlang_0.4.11-1 r-cran-rtsne_0.15-2+b1 r-cran-runit_0.4.32-3 r-cran-scales_1.1.1-1 r-cran-slam_0.1-48-1 r-cran-sparsesvd_0.2-2 r-cran-stringi_1.7.4-1 r-cran-stringr_1.4.0-2 r-cran-tibble_3.0.6+dfsg-1 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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.qBRbXj1N/trustedkeys.kbx': General error
gpgv: Signature made Sat Sep 18 19:01:25 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-monocle_2.20.0-2.dsc
dpkg-source: info: extracting r-bioc-monocle in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-monocle_2.20.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-monocle_2.20.0-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying drop-bioc-destiny-from-suggests.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
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dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-monocle
dpkg-buildpackage: info: source version 2.20.0-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-monocle/ -a -O--buildsystem=R
I: R packages needed for DEP8: testthat
I: R Package: monocle Version: 2.20.0
I: Building using R version 4.1.1-2
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Sun, 19 Sep 2021 00:26:42 +0530
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-monocle/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-monocle/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 19 Sep 2021 00:26:42 +0530'"
* installing *source* package 'monocle' ...
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-1lMLac/r-base-4.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c clustering.cpp -o clustering.o
g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-z,relro -o monocle.so RcppExports.o clustering.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-monocle/usr/lib/R/site-library/00LOCK-r-bioc-monocle-2.20.0/00new/monocle/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (monocle)
W: Ignoring specified R dependency: R (>= 2.10.0)
I: Using r-cran-matrix for Depends:Matrix (>= 1.2-6)
I: Using r-bioc-biobase for Depends:Biobase
I: Using r-cran-ggplot2 for Depends:ggplot2 (>= 1.0.0)
I: Using r-cran-vgam for Depends:VGAM (>= 1.0-6)
I: Using r-cran-ddrtree for Depends:DDRTree (>= 0.1.4)
I: Using r-cran-testthat for Recommends:testthat
I: Using r-cran-hmisc for Suggests:Hmisc
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-seurat for Suggests:Seurat
I: Using r-bioc-scater for Suggests:scater
I: Using r-cran-igraph for Imports:igraph (>= 1.0.1)
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
I: Using r-bioc-hsmmsinglecell for Imports:HSMMSingleCell (>= 0.101.5)
I: Using r-cran-plyr for Imports:plyr
I: Using r-cran-cluster for Imports:cluster
I: Using r-cran-combinat for Imports:combinat
I: Using r-cran-fastica for Imports:fastICA
I: Using r-cran-irlba for Imports:irlba (>= 2.0.0)
I: Using r-cran-matrixstats for Imports:matrixStats
I: Using r-cran-densityclust for Imports:densityClust (>= 0.3)
I: Using r-cran-rtsne for Imports:Rtsne
I: Using r-cran-mass for Imports:MASS
I: Using r-cran-reshape2 for Imports:reshape2
I: Using r-bioc-limma for Imports:limma
I: Using r-cran-tibble for Imports:tibble
I: Using r-cran-dplyr for Imports:dplyr
I: Using r-cran-qlcmatrix for Imports:qlcMatrix
I: Using r-cran-pheatmap for Imports:pheatmap
I: Using r-cran-stringr for Imports:stringr
I: Using r-cran-proxy for Imports:proxy
I: Using r-cran-slam for Imports:slam
I: Using r-cran-viridis for Imports:viridis
I: Using r-bioc-biocviews for Imports:biocViews
I: Using r-cran-rann for Imports:RANN (>= 2.5)
I: Using r-cran-rcpp for Imports:Rcpp (>= 0.12.0)
I: Using r-cran-rcpp for LinkingTo:Rcpp
I: BioConductor API version: r-api-bioc-3.13
I: Use r-bioc-monocle as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-monocle-dbgsym' in '../r-bioc-monocle-dbgsym_2.20.0-2_armhf.deb'.
dpkg-deb: building package 'r-bioc-monocle' in '../r-bioc-monocle_2.20.0-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-bioc-monocle_2.20.0-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-09-30T00:18:20Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-monocle_2.20.0-2_armhf.changes:
--------------------------------------
Format: 1.8
Date: Sun, 19 Sep 2021 00:26:42 +0530
Source: r-bioc-monocle
Binary: r-bioc-monocle r-bioc-monocle-dbgsym
Architecture: armhf
Version: 2.20.0-2
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
r-bioc-monocle - clustering, differential expression, and trajectory analysis for
Changes:
r-bioc-monocle (2.20.0-2) unstable; urgency=medium
.
* Team Upload.
[ Andreas Tille ]
* Disable reprotest
.
[ Nilesh Patra ]
* d/p/drop-bioc-destiny-from-suggests.patch: Drop r-bioc-destiny
from suggests (fixes debci)
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-monocle-dbgsym_2.20.0-2_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 349476 bytes: control archive=540 bytes.
394 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-monocle-dbgsym
Source: r-bioc-monocle
Version: 2.20.0-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 370
Depends: r-bioc-monocle (= 2.20.0-2)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-monocle
Build-Ids: 8e8d05fa6afbe31d1ab886b01c78d637d37d8da2
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drwxr-xr-x root/root 0 2021-09-18 18:56 ./usr/
drwxr-xr-x root/root 0 2021-09-18 18:56 ./usr/lib/
drwxr-xr-x root/root 0 2021-09-18 18:56 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-09-18 18:56 ./usr/lib/debug/.build-id/
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drwxr-xr-x root/root 0 2021-09-18 18:56 ./usr/share/
drwxr-xr-x root/root 0 2021-09-18 18:56 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-09-18 18:56 ./usr/share/doc/r-bioc-monocle-dbgsym -> r-bioc-monocle
r-bioc-monocle_2.20.0-2_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 1460856 bytes: control archive=3172 bytes.
1641 bytes, 19 lines control
7225 bytes, 80 lines md5sums
Package: r-bioc-monocle
Version: 2.20.0-2
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 1735
Depends: r-base-core (>= 4.1.1-2), r-api-4.0, r-api-bioc-3.13, r-cran-matrix (>= 1.2-6), r-bioc-biobase, r-cran-ggplot2 (>= 1.0.0), r-cran-vgam (>= 1.0-6), r-cran-ddrtree (>= 0.1.4), r-cran-igraph (>= 1.0.1), r-bioc-biocgenerics, r-bioc-hsmmsinglecell (>= 0.101.5), r-cran-plyr, r-cran-cluster, r-cran-combinat, r-cran-fastica, r-cran-irlba (>= 2.0.0), r-cran-matrixstats, r-cran-densityclust (>= 0.3), r-cran-rtsne, r-cran-mass, r-cran-reshape2, r-bioc-limma, r-cran-tibble, r-cran-dplyr, r-cran-qlcmatrix, r-cran-pheatmap, r-cran-stringr, r-cran-proxy, r-cran-slam, r-cran-viridis, r-bioc-biocviews, r-cran-rann (>= 2.5), r-cran-rcpp (>= 0.12.0), libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2)
Recommends: r-cran-testthat
Suggests: r-cran-hmisc, r-cran-knitr, r-cran-seurat, r-bioc-scater
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/monocle/
Description: clustering, differential expression, and trajectory analysis for RNA-Seq
Monocle performs differential expression and time-series analysis
for single-cell expression experiments. It orders individual cells
according to progress through a biological process, without knowing ahead
of time which genes define progress through that process. Monocle also
performs differential expression analysis, clustering, visualization, and
other useful tasks on single cell expression data. It is designed to work
with RNA-Seq and qPCR data, but could be used with other types as well.
drwxr-xr-x root/root 0 2021-09-18 18:56 ./
drwxr-xr-x root/root 0 2021-09-18 18:56 ./usr/
drwxr-xr-x root/root 0 2021-09-18 18:56 ./usr/lib/
drwxr-xr-x root/root 0 2021-09-18 18:56 ./usr/lib/R/
drwxr-xr-x root/root 0 2021-09-18 18:56 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2021-09-18 18:56 ./usr/lib/R/site-library/monocle/
-rw-r--r-- root/root 2603 2021-09-18 18:56 ./usr/lib/R/site-library/monocle/CITATION
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-rw-r--r-- root/root 9078 2021-09-18 18:56 ./usr/lib/R/site-library/monocle/INDEX
drwxr-xr-x root/root 0 2021-09-18 18:56 ./usr/lib/R/site-library/monocle/Meta/
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| Summary |
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Build Architecture: armhf
Build-Space: 15344
Build-Time: 319
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1091
Job: r-bioc-monocle_2.20.0-2
Machine Architecture: armhf
Package: r-bioc-monocle
Package-Time: 1461
Source-Version: 2.20.0-2
Space: 15344
Status: successful
Version: 2.20.0-2
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Finished at 2021-09-30T00:18:20Z
Build needed 00:24:21, 15344k disc space